miRTarBase - #MIRT446386


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pre-miRNA Information
pre-miRNA hsa-mir-3679   
Genomic Coordinates chr2: 134127125 - 134127192
Description Homo sapiens miR-3679 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3679-5p
Sequence 6| UGAGGAUAUGGCAGGGAAGGGGA |28
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 17 2 + 134127146 26487287 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN28578769 23 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1490236859 15 dbSNP
rs982355045 16 dbSNP
rs1053094244 17 dbSNP
rs893220051 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SYNCRIP   
Synonyms GRY-RBP, GRYRBP, HNRNPQ, HNRPQ1, NSAP1, PP68, hnRNP-Q
Description synaptotagmin binding cytoplasmic RNA interacting protein
Transcript NM_001159673   
Other Transcripts NM_001159674 , NM_001159675 , NM_001159676 , NM_001159677 , NM_006372   
Expression
Putative miRNA Targets on SYNCRIP
3'UTR of SYNCRIP
(miRNA target sites are highlighted)		 
>SYNCRIP|NM_001159673|3'UTR
   1 AGACTGACTTGCTATGTGGGATTACACCAGAAGCTTGCAGTGGAGTAATGGTAAGGAAATCAAGCAACCTTAAATATGTC
  81 GGCTGTATAGGAGCATATTCTATTGCAGAAGACCTTCCTATGAAGATCATGGAATCAAATACGGGACATTGAACTAATAC
 161 TTGGACTTTGATATGAATTTCTTTAACAATTTTCTCTGCAGTGCAAGTTATTAAACTAAAGCTACTCTATTTTCAAAATG
 241 TGTTCCAACAGAAATCCTTCATAACTCCTAGCATGGTATCTTAATAAAGAATAAAGTTCTTTTAAAAATCTGCTCTAAGT
 321 AGATTTTTCCCCTTTTTTAAATTAAGGATCCCAACAGTGGTATTTTGAAATATTCTCTTGAATTTGTGCATTTAAATTTT
 401 ATTGCAGTGGTATAGATGAATGCCACTGATGGTATCCTTAAATTTTATTTCTGCTCACCAAGGTTAATCATGATTGTCTA
 481 TATCTTTTTTATAGTGATCACTTTTGAATTGTGTTCAGATATGCAGTTTCAGGTGTAATCATCAGAGCTGGTTAGTCAGG
 561 CATTCCAGATAGTGGTTCTTTTCAGAACCTTTTTAAAAGGGTTGGTTAACTACCTCAGTAGCAGAGGATTGAACTATACC
 641 CTGTCTGTACTGTACATAGAAAATCTTTGTAGATAAAAGCAAGGCTTGTTAAATATGATATGAGGGTAAGATTTTAATAT
 721 ACCAAATGTAACATTCTTAGTTGCCTTTAGTTTCAGAGGCTTGTAAGACTTCCTCATGACCATCATAACAGGCCTTGCTT
 801 TTGTCGTATTTTGTGGCTGAAAAAGCAGCCTTGCTTCTTCAGATATTGTAGTTATTTGGATGTATAATAGTTTAGCAAGA
 881 TGTTACTTTTGTAAGACATCAGATGTTCAAAAAAGTGCATCCGAACTTGTACTAAATACTGCAGTGTCCCTTTATAAAAA
 961 GTCAGACTAAAACTGACAATTGTACAGCGAAGCCTGACATTTGGATATTTTGAAGTTTTTTCATAAATCATAGAAATTAG
1041 TATATGGCTGTAGTTTAGCTTTTTAGGTAAAAGGTATGTTTCATTAGTGCATTTCTTCCTGCTGATCACTGTAAACATGT
1121 GAATCAGCTTTCCATTTCTTATGCAGGTCATGATAACTTGTAGAGTAGAGTACAATCATTTGTGCTATGTTTTTAATTTT
1201 CTAAAGCACCTTGATGACAGTGAGTGTCCAGTGGTGAAGCATCCTCTATTGAACCACCCTCAAAAATTTTTTTGCCAAGT
1281 CCTAAGTTGATAGCTTAAAGTAAAAAGTGAAAATTATAGTTTCATTAGGACTTGGTGTAAAGAAATCCCCTCCCCCCTTC
1361 CCCAAAGGGATACTGCAGTTATATCACATACCCAATAGGCACCACGATGAAGATCAGAGCTTATACTTAATTAAGGTTTT
1441 ATACACACCAGTTCCCCAGTAAATGCAAATTTAACAAGAAAATCAGACATGTCATATGTTCAAAATGCTCATGGCAAACA
1521 ATCATTTTGCATTCCTGCAAATAAAATTGTTTTATACTGTAAGCTGGAGGCGAGTGTAACTTATTTTTGTAATAAAGTTT
1601 TTATTTTTTTTATGTGTCATTAATATAAATGTGTGTTAGTGTAGAAATCTTCTGGTTTAAAAACTTAGAATTGCACACAT
1681 TTCAGTATGTTTATTTGTACTTACATAATTTTAGAATAGTGGTTGCCAATAGCCTGTATGTTTCACATTAATTGGTTTTT
1761 TGTTATCTAAATAAATCATTTTAGTATGTTGTATGTCAGTTACTGGGATAGCTGGGACATAGAGTGTAATTTAAAATTTG
1841 TCAATAAGTATTCATTGGAATATATGTAAATGTGCCTTGCCGGTTATTGAAACTTATCTACAAAATGAGTATGGGGTGAC
1921 AAAAATTAGTTCCTGGTGCTTAATGAAACTTTCTGCCACTGATTTTATATATTACCCCGTGCTTTTTTAAAGTACATCTC
2001 TCTCAAAACTTAGTGTAAGTTTGAGGGCTACACAAAACATTTACATTTCATTCTAACATAATGAATATAATAGGTTGTGG
2081 AAAGTGGGTAAACTAAATGTAGCCTTCAGTAAAATTGAATCTCAGTGTAATCCTTGGTGCTGGCATTTCTCAGTTCCGAG
2161 GAGTTAAATGATCCCATCTAAGAGGTCATTGCCATGCCTATTGGCACTTTACTGTCATAGCATTTTTAAGGGACACTGTC
2241 AAGGTGTTTAAGTTCTCAGAATTACTTGTTGGGATTTTAGGACAGGTTTGTTTACTTAAAGTAAGAACTGCATTGTCAAA
2321 GTTGAAAGAGGAACACTTTTGTGAGTTCACAAATGTGTTCTTAAGAAAACATTAAAATATGGAGCTCTGGGTTTTCAAGA
2401 CTATTTGGCATTCTTAATTTGGGGACTTGGGAGGGAAACTGATAAAAAGAAATTGAAGAATTGATGGTTATACTTAAAGA
2481 AGGGTAATGTAAACAGTGGTGATGAAATATATACACATCAAGTGAAATTACTTGACAGTGTTCATTTGAATGACTTTGAA
2561 TTCAAGCCATTATAATTACTTTTAAAATTAAATATCATTTGCACTGTTCTGATAATGGGTGCAGTTTTTGAGCAATATAA
2641 TCAGAGCTAAATATGCATGTAGTGATTAGTGATGTGAACAATTAACGTTCTGAGAAGAAATACTAACTGTGGTATTTTCA
2721 AACTTAAATTTCTGTAGTAAAATCAGTATCAAAGTCTTATCAGATCAAGGAAAAACAGGCAATGCATATAAACATACTTT
2801 TGAATGTTGTGTGGCCTATAAAGCAATAATGCAATTTATATGGAATGTCATGGGATATGAGAAATGGAAATGCAAAAATA
2881 ACTAATCCTTTAGTAAAAATGTCAACATGTTAAAGGGGGAATGTTAACTAATGTAGGTTATTGCTATTTGTGATTTGTTT
2961 ATGGGTTCTTGGCTTTGACAGCTTCAAAGAATGGACAGTGATAAGTTAAAAGAAATTTTGTATATTGTCAAGGAAAGGGT
3041 CTTAAATCCGAGTCAAGTCCCTTCCTTGGGGTAAAAAATGTATTCTTAAAGCATTCTGATGTTAAAAAGAAAACTTAAGT
3121 TATCTAACCAAAACAGACGCAAGATTTTGTTTCTGCAGACTACTTGGCAATCAAAAGTGATCATAAATTTAGGTTATCAG
3201 TTTTCAGAAAGTTGCTTTGTGAGAAAATTTTGTTAGATATATTCTCCCAAGCATGCTTTTTGTGGAAGGTTTTCAGCCAT
3281 TGCCACTGAATCAGATGTTAAAAATGAAGGGAAAATTGAGTGTGCACACACACAACTGTTGTACACTCATGATTGCAGTT
3361 TTTAGCTTAAGAAACTTTTCTACCAGTTACTGTGAATCTGACTTAAAATGTAAAGTTTCCTCATGATAAAATAGGAACAA
3441 CATAGAAATGGATTGATGGGGTGATCTGAGTTATTGTATATAAAAGTTTTTAAAGAATAGAATGAACATCAAGCTAGATA
3521 GGCAAAAATTGACACATTCAGAACAGCTTTTTTGACTGCGAAGCCAAAAGTTGTCAGAAACAGCAAAAGATCCCTTATTA
3601 TTACAGAGTATTTTACGTAGTCTCTATTTTAAGGAGAGAAATTAAATAGAAGGGCTTCATGCATTTAGGGGAGGGTGCTA
3681 AAACTTCTCAAGTTCGTCAAACTTACAGGAATACCCACCATGATCATTTTCTCTCTAATTATGTATACCACAAAATTTTC
3761 ATCTGGCCATAGGAATTCACTGGTGGGTGTAAAATTAATGACTAAAGAAATTAAGTGACAAATACATAAAAGAAACAGAC
3841 TTGTGGGGATATTGTTTTAAGGTGTATTAATTACTCAGTGATGATACCACTCAATAGGGCATGCCACTACTTTTCTTAAG
3921 ATGCTAATTATGAAGCAGTGCTCACAGGCATTTTTTAACTAGCAAATTAGTAGATGGACTTTTGGGGTCTGTCACTTTTT
4001 AAAAGTATTTAAGACTTAAATTCTATTAGCACCACAGTCTGCCTTCAGTAATACACCTAAAATATTTTTCAGGACCAGAA
4081 GCATTCAGTTTGAAAATTTGCAGATGCAAACCAGTATTATTACTAACGCTCTGGGTCAAAGATTAGGTTTTTAATATTAA
4161 CAGTAGTCTGGTAAATATTTAGAAGTCTGGCATTGAGAAACAAAAGCTTGTACCTGACTAGTATTTTTATTTAAAAAAAT
4241 TAGTTCTGTTAGCTTATTTAAATTGTGTTTTATTTATCCGTAGAATTTATATTTATTTCATTCCTTTCATCTCACTGAAA
4321 ACTGTCTGCAGGCCCTTTGATTTGGATTAGATGTGTGAAGTACTGTCTTTTGCCAAAAACCTCAAATTACCTGTTCTTTT
4401 CAACGTAGTGGGTTTGTGCTTGTTTGGAGATCAGTTCAAAAACTATCTGTACTATCTGTACTGCCTCTGATGTTAAGATT
4481 TTATGTATAGCATAAGGAAGCTAGCTCTGACTATATTTTCCTAAGAATAAAGACCTATTTTTGTAGCATGTCTTAGGATC
4561 TCCAGGAGTCCAAGAATTATTGTGGGTGTCCTCCAATTCATCACTCTTCACTTAACAGCTTTTAAGTAGACACTTGGAAT
4641 CTTTAGAGGTCTGTCGCCCTTTGATTATCCATACATTCGAAGTAACTAGCCAATGGTGAAAAATTCCTCAAGATATCCTC
4721 AGTTGCAATCACATTACTGGAAGATGAATAGAATAAATGTATTAGGCTGGTCTTAATTTTTGATGGAAATATTCTGTTGT
4801 CCCGTACTTGCCATTGGATTTGATAAAGTTAGTGGTAATTTGGAAAGAATCGGGGACTTGCCAATATATTTGTGGGTTTT
4881 AGCTTATACCCCTAGGATTTCTTGGTTGCGGGACGAGCAGTTTTGGCCACTTCCATCAGGACAAGACTTTTTAGGTCACT
4961 TAGTGCAGGTTTTAGTTTCTATTTTGGATTAACAACATTTATATTGATTATCGAAAAGAAGCTTTCATCATTTCAGAACA
5041 GTCCTGGAAGTTTGACTTTGAGTGTGGGAGAAGTCCTAATAAACCATTTTGGAAATTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aggggAAGGGACGGUAUAGGAGu 5'
               ||||:    |||||||| 
Target 5' aaaaaTTCCTCAAGATATCCTCa 3'
 4699 - 4721 154.00 -15.50
2 
miRNA  3' aggGGAAGGGACGGUAUAGGAGu 5'
             ::|| :: | :||||:||| 
Target 5' aaaTTTTGTTAGATATATTCTCc 3'
 3225 - 3247 140.00 -9.40
3 
miRNA  3' aggggAAGGGACGGUAUAGGAGu 5'
               | :::||  ||||:||| 
Target 5' agtggTATTTTGAAATATTCTCt 3'
 356 - 378 138.00 -11.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26562530 28 COSMIC
COSN26547901 51 COSMIC
COSN30131037 56 COSMIC
COSN31575726 80 COSMIC
COSN30529048 95 COSMIC
COSN23774173 112 COSMIC
COSN30164097 119 COSMIC
COSN31606124 143 COSMIC
COSN6335280 173 COSMIC
COSN7900954 181 COSMIC
COSN14533441 518 COSMIC
COSN20091426 530 COSMIC
COSN19560708 560 COSMIC
COSN29100888 912 COSMIC
COSN7900953 989 COSMIC
COSN28781362 1070 COSMIC
COSN31487093 1082 COSMIC
COSN7900952 1254 COSMIC
COSN30173537 1266 COSMIC
COSN31524493 1386 COSMIC
COSN31538097 1425 COSMIC
COSN19600197 1546 COSMIC
COSN24871260 1961 COSMIC
COSN21392483 2074 COSMIC
COSN19603386 2168 COSMIC
COSN21902515 2232 COSMIC
COSN26794035 2281 COSMIC
COSN26486066 2462 COSMIC
COSN9915116 2528 COSMIC
COSN7900951 3394 COSMIC
COSN505866 3427 COSMIC
COSN145375 3562 COSMIC
COSN2181291 4007 COSMIC
COSN27801837 4480 COSMIC
COSN15668201 4791 COSMIC
COSN29834819 5054 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs572189387 4 dbSNP
rs1443087861 5 dbSNP
rs1280765903 12 dbSNP
rs1203642665 14 dbSNP
rs1311529707 17 dbSNP
rs892667889 29 dbSNP
rs1289422933 37 dbSNP
rs765137537 40 dbSNP
rs891915185 45 dbSNP
rs1053175848 46 dbSNP
rs1354182799 47 dbSNP
rs1256383368 77 dbSNP
rs146922663 79 dbSNP
rs548827448 81 dbSNP
rs1193279479 82 dbSNP
rs925941330 87 dbSNP
rs936790053 95 dbSNP
rs533998494 97 dbSNP
rs1172047685 98 dbSNP
rs750504040 102 dbSNP
rs537605140 120 dbSNP
rs911724862 128 dbSNP
rs1350674705 136 dbSNP
rs555106217 138 dbSNP
rs1291507531 142 dbSNP
rs1219122782 143 dbSNP
rs1344659927 143 dbSNP
rs765469848 154 dbSNP
rs1279980912 160 dbSNP
rs950534353 161 dbSNP
rs1213460272 169 dbSNP
rs917831164 181 dbSNP
rs992125094 186 dbSNP
rs1290050101 188 dbSNP
rs547915210 189 dbSNP
rs1245300195 196 dbSNP
rs541524937 210 dbSNP
rs963383370 211 dbSNP
rs974204367 219 dbSNP
rs1033313601 226 dbSNP
rs1002214187 229 dbSNP
rs906086719 248 dbSNP
rs1014455423 249 dbSNP
rs1407237368 259 dbSNP
rs181701826 260 dbSNP
rs962463781 261 dbSNP
rs28532244 271 dbSNP
rs891967727 273 dbSNP
rs1053200737 278 dbSNP
rs1338326963 279 dbSNP
rs780195688 283 dbSNP
rs1284211304 289 dbSNP
rs904540636 290 dbSNP
rs374969081 291 dbSNP
rs1039005402 294 dbSNP
rs1290547417 297 dbSNP
rs190041508 301 dbSNP
rs150082967 302 dbSNP
rs1006543572 308 dbSNP
rs1259812477 309 dbSNP
rs531713174 309 dbSNP
rs911834755 315 dbSNP
rs561583406 316 dbSNP
rs1030992072 323 dbSNP
rs1473800150 333 dbSNP
rs997782205 335 dbSNP
rs973131083 343 dbSNP
rs1420610590 345 dbSNP
rs1410226599 352 dbSNP
rs1397985788 360 dbSNP
rs1160162851 362 dbSNP
rs762074156 373 dbSNP
rs1358401619 375 dbSNP
rs1160975147 386 dbSNP
rs543304103 396 dbSNP
rs769253774 397 dbSNP
rs572604585 410 dbSNP
rs1385174117 425 dbSNP
rs1033777290 426 dbSNP
rs1445147061 430 dbSNP
rs575701722 431 dbSNP
rs1164839721 434 dbSNP
rs1377181395 435 dbSNP
rs760915836 455 dbSNP
rs1311845131 459 dbSNP
rs980494104 464 dbSNP
rs1204957593 470 dbSNP
rs970783353 471 dbSNP
rs1444690582 472 dbSNP
rs1231566665 473 dbSNP
rs1181332483 474 dbSNP
rs892605461 478 dbSNP
rs555754220 480 dbSNP
rs1014507867 487 dbSNP
rs1180764560 491 dbSNP
rs956193532 493 dbSNP
rs1001017960 507 dbSNP
rs1469413380 513 dbSNP
rs545121492 522 dbSNP
rs866005871 523 dbSNP
rs1412756994 526 dbSNP
rs1335411845 527 dbSNP
rs904632124 534 dbSNP
rs539094287 551 dbSNP
rs759327168 552 dbSNP
rs1292396997 554 dbSNP
rs1334853653 558 dbSNP
rs1248172885 559 dbSNP
rs1238760356 560 dbSNP
rs1351197862 572 dbSNP
rs1275878851 581 dbSNP
rs1347669743 583 dbSNP
rs577642388 594 dbSNP
rs1278790642 595 dbSNP
rs1262529899 596 dbSNP
rs774282644 604 dbSNP
rs555811584 620 dbSNP
rs79750012 623 dbSNP
rs1200652103 631 dbSNP
rs1056744599 652 dbSNP
rs929925843 654 dbSNP
rs890444007 655 dbSNP
rs918384328 657 dbSNP
rs1437525523 660 dbSNP
rs1199303641 663 dbSNP
rs1379160464 664 dbSNP
rs573257712 665 dbSNP
rs1175644843 676 dbSNP
rs929187032 679 dbSNP
rs1466711010 693 dbSNP
rs919109926 694 dbSNP
rs1037469102 697 dbSNP
rs962559859 701 dbSNP
rs1386995995 702 dbSNP
rs535436890 704 dbSNP
rs1333210537 713 dbSNP
rs1403592174 720 dbSNP
rs1283166287 727 dbSNP
rs1319275720 740 dbSNP
rs910971421 745 dbSNP
rs941848116 747 dbSNP
rs1338908950 752 dbSNP
rs1210675477 755 dbSNP
rs1269142886 760 dbSNP
rs1184214700 763 dbSNP
rs926420047 770 dbSNP
rs980929513 773 dbSNP
rs970454583 776 dbSNP
rs985241174 777 dbSNP
rs954990433 784 dbSNP
rs1372010133 790 dbSNP
rs993096009 791 dbSNP
rs1029349358 798 dbSNP
rs570296035 806 dbSNP
rs1403473138 821 dbSNP
rs1031912764 825 dbSNP
rs1341680672 833 dbSNP
rs1470594557 836 dbSNP
rs1402405622 846 dbSNP
rs1293452704 848 dbSNP
rs1325953802 851 dbSNP
rs1245746294 854 dbSNP
rs1267424295 855 dbSNP
rs377602824 859 dbSNP
rs1000392143 861 dbSNP
rs150956081 862 dbSNP
rs1365770676 867 dbSNP
rs1221453434 869 dbSNP
rs1286474789 876 dbSNP
rs956964692 880 dbSNP
rs1197613146 882 dbSNP
rs10223397 886 dbSNP
rs1184727816 889 dbSNP
rs1031696736 891 dbSNP
rs758477347 892 dbSNP
rs1423856400 902 dbSNP
rs1189072238 903 dbSNP
rs1269748381 909 dbSNP
rs1000988552 912 dbSNP
rs868707707 922 dbSNP
rs35163893 929 dbSNP
rs748791225 930 dbSNP
rs1455761985 931 dbSNP
rs570403859 932 dbSNP
rs1023642578 943 dbSNP
rs35016071 961 dbSNP
rs1283248483 963 dbSNP
rs1224134877 966 dbSNP
rs1384926537 966 dbSNP
rs1396664141 967 dbSNP
rs1315017837 968 dbSNP
rs890460465 972 dbSNP
rs1012287037 976 dbSNP
rs199863975 976 dbSNP
rs145307784 979 dbSNP
rs896452785 980 dbSNP
rs558212432 985 dbSNP
rs993388819 985 dbSNP
rs566698293 988 dbSNP
rs1056479035 993 dbSNP
rs1483571729 1000 dbSNP
rs1272712194 1012 dbSNP
rs929994037 1014 dbSNP
rs140291644 1015 dbSNP
rs539153511 1018 dbSNP
rs1038006184 1023 dbSNP
rs772636211 1024 dbSNP
rs1465832456 1029 dbSNP
rs1304449528 1034 dbSNP
rs1381268355 1036 dbSNP
rs1421220518 1042 dbSNP
rs941915822 1043 dbSNP
rs1407250984 1050 dbSNP
rs769546683 1051 dbSNP
rs1044830496 1057 dbSNP
rs1404030828 1059 dbSNP
rs949131133 1071 dbSNP
rs1332256143 1073 dbSNP
rs917601208 1080 dbSNP
rs987833002 1082 dbSNP
rs1235349370 1083 dbSNP
rs1260655137 1086 dbSNP
rs200123336 1087 dbSNP
rs1038731576 1095 dbSNP
rs745795634 1101 dbSNP
rs1198772731 1106 dbSNP
rs747878573 1113 dbSNP
rs956339417 1116 dbSNP
rs1175776509 1118 dbSNP
rs535316952 1119 dbSNP
rs1434211362 1126 dbSNP
rs1179242997 1129 dbSNP
rs1427860120 1138 dbSNP
rs1430017376 1139 dbSNP
rs550267231 1142 dbSNP
rs968921317 1144 dbSNP
rs985186012 1151 dbSNP
rs933742830 1152 dbSNP
rs1368071015 1155 dbSNP
rs1474347517 1157 dbSNP
rs1281267364 1160 dbSNP
rs954765366 1167 dbSNP
rs1030360214 1173 dbSNP
rs1241460526 1174 dbSNP
rs1259433097 1175 dbSNP
rs922373719 1182 dbSNP
rs993485255 1185 dbSNP
rs1216492167 1187 dbSNP
rs1448486855 1195 dbSNP
rs146718039 1200 dbSNP
rs11558766 1201 dbSNP
rs143395675 1205 dbSNP
rs566286846 1209 dbSNP
rs1480433441 1211 dbSNP
rs1194396827 1212 dbSNP
rs1421761462 1213 dbSNP
rs115495559 1214 dbSNP
rs549570438 1215 dbSNP
rs757277850 1217 dbSNP
rs905042229 1218 dbSNP
rs1344721121 1228 dbSNP
rs968149661 1246 dbSNP
rs529422638 1248 dbSNP
rs1271381534 1251 dbSNP
rs1359293351 1257 dbSNP
rs747357295 1261 dbSNP
rs1216265120 1263 dbSNP
rs1213517648 1265 dbSNP
rs1023775050 1266 dbSNP
rs1012255922 1268 dbSNP
rs1225179237 1274 dbSNP
rs1432166252 1274 dbSNP
rs527969909 1275 dbSNP
rs1195067636 1276 dbSNP
rs1243883731 1279 dbSNP
rs1474450291 1280 dbSNP
rs1035535980 1282 dbSNP
rs1469449058 1283 dbSNP
rs1407122470 1291 dbSNP
rs1178605635 1295 dbSNP
rs994179175 1300 dbSNP
rs1414783738 1309 dbSNP
rs1446744973 1317 dbSNP
rs935018146 1324 dbSNP
rs780574579 1326 dbSNP
rs1418945556 1328 dbSNP
rs758872888 1329 dbSNP
rs1320170852 1330 dbSNP
rs1343408706 1333 dbSNP
rs560765018 1334 dbSNP
rs1284343410 1351 dbSNP
rs1384456948 1352 dbSNP
rs545292850 1353 dbSNP
rs141099430 1355 dbSNP
rs750497190 1356 dbSNP
rs1445833678 1358 dbSNP
rs1215154444 1359 dbSNP
rs1240992542 1362 dbSNP
rs1182753614 1369 dbSNP
rs1461441630 1382 dbSNP
rs1049577137 1383 dbSNP
rs910734718 1388 dbSNP
rs1384890347 1389 dbSNP
rs562253138 1392 dbSNP
rs543854322 1395 dbSNP
rs570198768 1397 dbSNP
rs1405694146 1398 dbSNP
rs745530082 1402 dbSNP
rs954857625 1403 dbSNP
rs778325486 1405 dbSNP
rs1273160762 1412 dbSNP
rs989002735 1418 dbSNP
rs770376496 1420 dbSNP
rs1215622368 1423 dbSNP
rs1240194204 1435 dbSNP
rs1368014963 1441 dbSNP
rs201906504 1444 dbSNP
rs1313289238 1445 dbSNP
rs554932280 1455 dbSNP
rs1452388341 1464 dbSNP
rs1384068958 1467 dbSNP
rs1338909198 1468 dbSNP
rs765293765 1474 dbSNP
rs925614320 1477 dbSNP
rs972116721 1486 dbSNP
rs979629705 1489 dbSNP
rs1016641481 1491 dbSNP
rs1353960348 1491 dbSNP
rs968282878 1492 dbSNP
rs1006149470 1494 dbSNP
rs1230971876 1498 dbSNP
rs1469523718 1501 dbSNP
rs540557085 1503 dbSNP
rs1431412764 1508 dbSNP
rs1467758383 1510 dbSNP
rs573032949 1514 dbSNP
rs916857667 1515 dbSNP
rs905136550 1521 dbSNP
rs1171260938 1522 dbSNP
rs1400571596 1522 dbSNP
rs1411524813 1523 dbSNP
rs1383318232 1525 dbSNP
rs1162912832 1533 dbSNP
rs1334385114 1536 dbSNP
rs757463249 1537 dbSNP
rs1445010332 1560 dbSNP
rs558004015 1570 dbSNP
rs961201165 1571 dbSNP
rs1244791842 1572 dbSNP
rs1326347914 1584 dbSNP
rs753990246 1589 dbSNP
rs1013462396 1597 dbSNP
rs1035102865 1597 dbSNP
rs1340247637 1602 dbSNP
rs896311847 1603 dbSNP
rs1480121061 1604 dbSNP
rs994666841 1608 dbSNP
rs1052192049 1612 dbSNP
rs1436987436 1612 dbSNP
rs1232917129 1613 dbSNP
rs1206014496 1616 dbSNP
rs1479454542 1618 dbSNP
rs961361263 1622 dbSNP
rs1016960878 1623 dbSNP
rs1197985116 1623 dbSNP
rs1463160152 1625 dbSNP
rs1165759461 1626 dbSNP
rs1395383469 1634 dbSNP
rs1409731821 1641 dbSNP
rs1304201471 1649 dbSNP
rs1347865041 1650 dbSNP
rs1403649965 1652 dbSNP
rs1344868657 1654 dbSNP
rs764310796 1654 dbSNP
rs749202912 1656 dbSNP
rs1229757027 1667 dbSNP
rs889689577 1683 dbSNP
rs1339046718 1697 dbSNP
rs1222953147 1698 dbSNP
rs935027995 1703 dbSNP
rs1049713271 1704 dbSNP
rs1245977854 1704 dbSNP
rs539272208 1722 dbSNP
rs1221688400 1725 dbSNP
rs551882662 1729 dbSNP
rs3778143 1734 dbSNP
rs1052835643 1736 dbSNP
rs1372141138 1738 dbSNP
rs1444869102 1747 dbSNP
rs1315295013 1751 dbSNP
rs879244852 1755 dbSNP
rs934425246 1756 dbSNP
rs1423247988 1762 dbSNP
rs925591264 1766 dbSNP
rs1303044879 1771 dbSNP
rs1042689833 1775 dbSNP
rs1383984379 1776 dbSNP
rs933527011 1782 dbSNP
rs114797392 1784 dbSNP
rs1247011040 1787 dbSNP
rs1316835321 1788 dbSNP
rs774046248 1790 dbSNP
rs972126555 1798 dbSNP
rs879895692 1816 dbSNP
rs567706067 1818 dbSNP
rs1486843235 1819 dbSNP
rs1202784654 1822 dbSNP
rs1260448946 1826 dbSNP
rs916826557 1834 dbSNP
rs1298758239 1840 dbSNP
rs1185082621 1846 dbSNP
rs549083923 1855 dbSNP
rs1363859691 1864 dbSNP
rs962072585 1880 dbSNP
rs991512932 1882 dbSNP
rs960871438 1897 dbSNP
rs909284228 1899 dbSNP
rs1425279741 1903 dbSNP
rs1386810728 1907 dbSNP
rs550227915 1943 dbSNP
rs1380924841 1950 dbSNP
rs1156710318 1956 dbSNP
rs1307446119 1964 dbSNP
rs928124583 1968 dbSNP
rs1318592604 1971 dbSNP
rs1418082886 1978 dbSNP
rs1236817486 1979 dbSNP
rs969410322 1993 dbSNP
rs762845997 1994 dbSNP
rs961747970 1996 dbSNP
rs1460648635 1997 dbSNP
rs1017054729 1998 dbSNP
rs1222334878 1999 dbSNP
rs527655020 2011 dbSNP
rs1030815401 2012 dbSNP
rs999290440 2013 dbSNP
rs1490664802 2017 dbSNP
rs1157599871 2019 dbSNP
rs772763845 2019 dbSNP
rs763978390 2020 dbSNP
rs1470335226 2030 dbSNP
rs866542684 2031 dbSNP
rs769365093 2034 dbSNP
rs1267534006 2038 dbSNP
rs1404092245 2039 dbSNP
rs903630326 2040 dbSNP
rs1043464740 2041 dbSNP
rs954062977 2042 dbSNP
rs1298484836 2045 dbSNP
rs1316755227 2052 dbSNP
rs1375295952 2053 dbSNP
rs1389499887 2054 dbSNP
rs1007007846 2058 dbSNP
rs1028211918 2059 dbSNP
rs1346139063 2062 dbSNP
rs1224813935 2063 dbSNP
rs1260713312 2067 dbSNP
rs1307967273 2071 dbSNP
rs889453427 2074 dbSNP
rs1252213861 2075 dbSNP
rs756030897 2090 dbSNP
rs998515677 2094 dbSNP
rs1175905223 2095 dbSNP
rs567065300 2098 dbSNP
rs1481050238 2102 dbSNP
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rs1427314566 2108 dbSNP
rs1053374195 2109 dbSNP
rs371720981 2120 dbSNP
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rs1405442157 2127 dbSNP
rs533351315 2133 dbSNP
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rs912679584 4888 dbSNP
rs1355725895 4893 dbSNP
rs987042650 4897 dbSNP
rs967591891 4898 dbSNP
rs1442081192 4909 dbSNP
rs951459783 4910 dbSNP
rs78422167 4914 dbSNP
rs1059161 4915 dbSNP
rs974408901 4923 dbSNP
rs1309268634 4927 dbSNP
rs958638735 4931 dbSNP
rs777879069 4933 dbSNP
rs1379863804 4945 dbSNP
rs1167333676 4948 dbSNP
rs1449212333 4952 dbSNP
rs1391221985 4954 dbSNP
rs1488959889 4981 dbSNP
rs543328065 4989 dbSNP
rs1215304706 4997 dbSNP
rs1059162 4999 dbSNP
rs1250865095 4999 dbSNP
rs1034403030 5001 dbSNP
rs1190703381 5010 dbSNP
rs188299074 5011 dbSNP
rs1020460852 5012 dbSNP
rs1009949422 5013 dbSNP
rs1255484153 5014 dbSNP
rs1201124335 5022 dbSNP
rs1484312432 5029 dbSNP
rs1462726560 5039 dbSNP
rs1323513009 5043 dbSNP
rs892813315 5044 dbSNP
rs971397319 5046 dbSNP
rs1249542115 5048 dbSNP
rs1392670996 5048 dbSNP
rs1032651028 5051 dbSNP
rs1364774561 5054 dbSNP
rs1212861077 5056 dbSNP
rs529984775 5059 dbSNP
rs1295000827 5065 dbSNP
rs1335588418 5067 dbSNP
rs1342545599 5070 dbSNP
rs1271524007 5072 dbSNP
rs1467814155 5075 dbSNP
rs1299580246 5083 dbSNP
rs182403039 5084 dbSNP
rs1484880634 5086 dbSNP
rs189788150 5092 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aggggaagggacggUAUAGGAGu 5'
                        |||||||| 
Target 5' ---------ucaagAUAUCCUCa 3'
 		1 - 14
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000355238.6 | 3UTR | UCAAGAUAUCCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000355238.6 | 3UTR | UCAAGAUAUCCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD 0.985 0.06 1.000 0.5 3 Click to see details
THCA -0.935 0.12 -1.000 0.5 3 Click to see details
LUSC 0.69 0.26 1.000 0.5 3 Click to see details
HNSC 0.658 0.27 0.500 0.33 3 Click to see details
HNSC 0.658 0.27 0.500 0.33 3 Click to see details
HNSC 0.658 0.27 0.500 0.33 3 Click to see details
HNSC 0.658 0.27 0.500 0.33 3 Click to see details
HNSC 0.658 0.27 0.500 0.33 3 Click to see details
HNSC 0.658 0.27 0.500 0.33 3 Click to see details
55 hsa-miR-3679-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT114494 PNN pinin, desmosome associated protein 2 2
MIRT169967 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 6
MIRT182181 POU2F1 POU class 2 homeobox 1 2 2
MIRT189380 TXLNA taxilin alpha 2 4
MIRT364735 TOR1B torsin family 1 member B 2 2
MIRT445477 KDM6A lysine demethylase 6A 2 2
MIRT446333 ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 2 2
MIRT446386 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446971 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT449793 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT451211 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 2 2
MIRT452098 NUCB2 nucleobindin 2 2 2
MIRT454036 DDT D-dopachrome tautomerase 2 2
MIRT461708 ZNF426 zinc finger protein 426 2 2
MIRT464957 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT465775 TMOD3 tropomodulin 3 2 2
MIRT466925 STC2 stanniocalcin 2 2 2
MIRT471388 PDPR pyruvate dehydrogenase phosphatase regulatory subunit 2 2
MIRT473585 MAT2A methionine adenosyltransferase 2A 2 2
MIRT476070 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT477324 EPHA2 EPH receptor A2 2 2
MIRT478244 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT480449 C16orf72 chromosome 16 open reading frame 72 2 6
MIRT481866 ANKRD50 ankyrin repeat domain 50 2 2
MIRT492032 TSG101 tumor susceptibility 101 2 4
MIRT493737 GRAP2 GRB2-related adaptor protein 2 2 2
MIRT495623 PPP1R1C protein phosphatase 1 regulatory inhibitor subunit 1C 2 2
MIRT497590 SLC23A1 solute carrier family 23 member 1 2 2
MIRT504702 ZNF117 zinc finger protein 117 2 2
MIRT507794 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT510653 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT525534 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT531149 CYGB cytoglobin 2 2
MIRT536003 MED13 mediator complex subunit 13 2 2
MIRT537056 GPR180 G protein-coupled receptor 180 2 2
MIRT538297 CSNK2A1 casein kinase 2 alpha 1 2 2
MIRT544755 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT544927 MIS18BP1 MIS18 binding protein 1 2 2
MIRT556973 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT561714 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT563632 ZNF460 zinc finger protein 460 2 2
MIRT564705 ZNF322P1 zinc finger protein 322 pseudogene 1 2 2
MIRT572190 CALU calumenin 2 2
MIRT573900 MKI67 marker of proliferation Ki-67 2 2
MIRT576073 Poteg POTE ankyrin domain family, member G 2 2
MIRT576150 Hmox1 heme oxygenase 1 2 2
MIRT614848 PLEKHA6 pleckstrin homology domain containing A6 2 4
MIRT647592 FAM109B family with sequence similarity 109 member B 2 2
MIRT657009 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT691268 GET4 golgi to ER traffic protein 4 2 2
MIRT695778 DENR density regulated re-initiation and release factor 2 2
MIRT698089 TPM1 tropomyosin 1 2 2
MIRT732571 IGLL5 immunoglobulin lambda like polypeptide 5 1 0
MIRT733722 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 3 0
MIRT734354 GREM1 gremlin 1, DAN family BMP antagonist 1 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3679-5p 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3679 Doxorubicin 31703 NSC123127 approved sensitive High Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-3679-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-3679-5p Doxorubicin 31703 NSC123127 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-3679-5p Curcumin 969516 NSC32982 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-3679-5p Osimertinib 71496458 NSC779217 approved resistant Low Non-Small Cell Lung Cancer tissue
hsa-miR-3679-5p Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-3679-5p Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-3679-5p Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-3679-5p Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-3679-5p Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-3679-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3679-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3679-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-3679-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-3679-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-3679-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3679-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-3679-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3679-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)

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