miRTarBase - #MIRT446605


—
pre-miRNA Information
pre-miRNA hsa-mir-1343   
Genomic Coordinates chr11: 34941837 - 34941920
Description Homo sapiens miR-1343 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1343-3p
Sequence 52| CUCCUGGGGCCCGCACUCUCGC |73
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30640426 13 COSMIC
COSN32131883 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030024806 10 dbSNP
rs568333985 11 dbSNP
rs1335261302 13 dbSNP
rs1228966720 17 dbSNP
rs950497159 20 dbSNP
rs748356067 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HIP1   
Synonyms HIP-I, ILWEQ, SHON, SHONbeta, SHONgamma
Description huntingtin interacting protein 1
Transcript NM_005338   
Expression
Putative miRNA Targets on HIP1
3'UTR of HIP1
(miRNA target sites are highlighted)		 
>HIP1|NM_005338|3'UTR
   1 AGCCAAACCAACACCCCATATGTCAGTGTAAATCCTTGTTACCTATCTCGTGTGTGTTATTTCCCCAGCCACAGGCCAAA
  81 TCCTTGGAGTCCCAGGGGCAGCCACACCACTGCCATTACCCAGTGCCGAGGACATGCATGACACTTCCAAAGACTCCCTC
 161 CATAGCGACACCCTTTCTGTTTGGACCCATGGTCATCTCTGTTCTTTTCCCGCCTCCCTAGTTAGCATCCAGGCTGGCCA
 241 GTGCTGCCCATGAGCAAGCCTAGGTACGAAGAGGGGTGGTGGGGGGCAGGGCCACTCAACAGAGAGGACCAACATCCAGT
 321 CCTGCTGACTATTTGACCCCCACAACAATGGGTATCCTTAATAGAGGAGCTGCTTGTTGTTTGTTGACAGCTTGGAAAGG
 401 GAAGATCTTATGCCTTTTCTTTTCTGTTTTCTTCTCAGTCTTTTCAGTTTCATCATTTGCACAAACTTGTGAGCATCAGA
 481 GGGCTGATGGATTCCAAACCAGGACACTACCCTGAGATCTGCACAGTCAGAAGGACGGCAGGAGTGTCCTGGCTGTGAAT
 561 GCCAAAGCCATTCTCCCCCTCTTTGGGCAGTGCCATGGATTTCCACTGCTTCTTATGGTGGTTGGTTGGGTTTTTTGGTT
 641 TTGTTTTTTTTTTTAAGTTTCACTCACATAGCCAACTCTCCCAAAGGGCACACCCCTGGGGCTGAGTCTCCAGGGCCCCC
 721 CAACTGTGGTAGCTCCAGCGATGGTGCTGCCCAGGCCTCTCGGTGCTCCATCTCCGCCTCCACACTGACCAAGTGCTGGC
 801 CCACCCAGTCCATGCTCCAGGGTCAGGCGGAGCTGCTGAGTGACAGCTTTCCTCAAAAAGCAGAAGGAGAGTGAGTGCCT
 881 TTCCCTCCTAAAGCTGAATCCCGGCGGAAAGCCTCTGTCCGCCTTTACAAGGGAGAAGACAACAGAAAGAGGGACAAGAG
 961 GGTTCACACAGCCCAGTTCCCGTGACGAGGCTCAAAAACTTGATCACATGCTTGAATGGAGCTGGTGAGATCAACAACAC
1041 TACTTCCCTGCCGGAATGAACTGTCCGTGAATGGTCTCTGTCAAGCGGGCCGTCTCCCTTGGCCCAGAGACGGAGTGTGG
1121 GAGTGATTCCCAACTCCTTTCTGCAGACGTCTGCCTTGGCATCCTCTTGAATAGGAAGATCGTTCCACCTTCTACGCAAT
1201 TGACAAACCCGGAAGATCAGATGCAATTGCTCCCATCAGGGAAGAACCCTATACTTGGTTTGCTACCCTTAGTATTTATT
1281 ACTAACCTCCCTTAAGCAGCAACAGCCTACAAAGAGATGCTTGGAGCAATCAGAACTTCAGGTGTGACTCTAGCAAGGCT
1361 CATCTTTCTGCCCGGCTACATCAGCCTTCAAGAATCAGAAGAAAGGCCAAGGTGCTGGACTGTTACTGACTTGGATCCCA
1441 AAGCAAGGAGATCATTTGGAGCTCTTGGGTCAGAGAAAATGAGAAAGGACAGAGCCAGCGGCTCCAACTCCTTTCAGCCA
1521 CATGCCCCAGGCTCTCGCTGCCCTGTGGACAGGATGAGGACAGAGGGCACATGAACAGCTTGCCAGGGATGGGCAGCCCA
1601 ACAGCACTTTTCCTCTTCTAGATGGACCCCAGCATTTAAGTGACCTTCTGATCTTGGAAAAACAGCGTCTTCCTTCTTTA
1681 TCTATAGCAACTCATTGGTGGTAGCCATCAAGCACTTCCCAGGATCTGCTCCAACAGAATATTGCTAGGTTTTGCTACAT
1761 GACGGGTTGTGAGACTTCTGTTTGATCACTGTGAACCAACCCCCATCTCCCTAGCCCACCCCCCTCCCCAACTCCCTCTC
1841 TGTGCATTTTCTAAGTGGGACATTCAAAAAACTCTCTCCCAGGACCTCGGATGACCATACTCAGACGTGTGACCTCCATA
1921 CTGGGCTAAGGAAGTATCAGCACTAGAAATTGGGCAGTCTTAATGTTGAATGCTGCTTTCTGCTTAGTATTTTTTTGATT
2001 CAAGGCTCAGAAGGAATGGTGCGTGGCTTCCCTGTCCCAGTTGTGGCAACTAAACCAATCGGTGTGTTCTTGATGCGGGT
2081 CAACATTTCCAAAAGTGGCTAGTCCTCACTTCTAGATCTCAGCCATTCTAACTCATATGTTCCCAATTACCAAGGGGTGG
2161 CCGGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCTGAGGTGGTAGGATCACCTGAGGTCAGGAGTTCAA
2241 GACCAGCCTGTCCAACATGGTGAAACCCCCATCTCTACTAAAAATACCAAAAATTAGCCGAGCGTAGTGACGGGTGCCCG
2321 TAATCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCACCTGAACCCCAGAGGCAGAGGTTGCAGTGAGCTGAGATCACG
2401 CCATTGTACTCCAGCCTGGGCAACAAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAATTACAAATGGGGCAAACAGTCT
2481 AGTGTAATGGATCAAATTAAGATTCTCTGCCCAGCCGGGCACAGTGGCGCATGCCTGTAATCCCAGAACTTTGGGAGGCC
2561 AAGACGGGATGATTGCTTGAGCTCAGGAGTTTGAGACCAGGCTGGGCATCATAGCAAGACCTCATCTCTACTAAAATTCA
2641 AAAACAAAATTAGCCGGGCATGATGGTGCATGCCTGTAGTCTCAGCTAGTTGGGGAGCTAAGGTGGGAGAATTGCTTGAG
2721 CTTGGGAAGTCGAGGCTGCAGTCAGCCCTGATTGTGCCAGTGCACTCCGGCCTGGGTGACAGAGTGAGACCCTGTCTCAA
2801 AAAAAAAAAGATTCTGTGTCAGAGCCCAGCCCAGGAGTTTGAGGCTGCAATGAGCCATGATTTCCCACTGCACTCCAGCC
2881 TGAGTGACAGAGCGAGACTCCATCTCTTTAAAAACAAACAAAAAATTATCTGAATGATCCTGTCTCTAAAAAGAAGCCAC
2961 AGAAATGTTTAAAAACTTCATCGACTTAGCCTGAGTCATAACGGTTAAGAAAGCACTTAAACAGAAGCAGAGGCTAATTC
3041 AGTGTCACATGAGGAAGTAGCTGTCAGATGTCACATAATTACTTTCGTAATAGCTCAGATTAGAATGGCTACCCCATTCT
3121 CTAGACAAAATCAAATTGTCCTATTGTGACTCTTCTAAAAATGAAGATGAAGAGCTATTTAATGACACACCTTGGATTAA
3201 AACGGGAATCACATCTTAAAGCTAAAAATGAACCTGCAAGCCTTCTAAATGAGTCACTGAGCATCACTAGTGACAAGTCT
3281 CGGGTGAGCGTAAATGGGTCATGACAAGATGGGACAGCAACAAAATCATGGCTTAGGATCGACAAGAAGTTAAAAAACAG
3361 CTGCATCTGTTACTTAAGTTTGTAAGACAGTGCCCTGAGACCTCTAGAGAAAAGATGTTTGTTTACATAAGAGAAAGAGG
3441 CCAGACATGGTGTCTCACACGTTTAATCCCAGCACTTTGGGAGGCAGGGGCGGGTGGATCACCTGAGGTCAGGAGTTCAA
3521 GACTAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCAGGCGCCTATA
3601 ATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGGGACAGAGGTTGTAGTGAGCCAAGATCGCACC
3681 ACTGCACTCCAGCCTGGGTCACAGAGTGAGACTCCATCTCAAAAAAAAAAAAGAGAGAGAGAGAGAAAGAAATAGAAGAG
3761 AAGAGCCATCTTGGCAGGGTTATTTTATATCTGAGCAAGGAGTTTAAATGAGACTAGTTTAGATTGTCTGCTGATGCAGC
3841 CGTCCATAGCAGTACCCCTAAAATCCCACCAGAATACGGGTCCCTCTAACCCAGTGGCTGGAAGAACCACTGTCTAGAGC
3921 AACTTTTCTTGGAACTGTCCCAGCTACCAAGTCAGACACCAAGGTTTATGCCACCAGGTAACACGGGAATCACAGGTACA
4001 TGTCGCTCCGGTCAGATTAGTTGGCTTTGGCCCCTCGACCCTGTGCAGGAGCTAGTTCTCAGCTTGCAGCTGGAAGTTCC
4081 CTCTTAGCTCCTTAGTCTAGAGGGGTCTCCTGGCTCCATTTGACCCTGGTCTTTAATAACCGGTCAGCATCTTGCTACCT
4161 TCTACCACCTTTCCAAATCTCTGGAAATCCTGCCAGGGAAAGCCTCCAGTTCCAACATTGGCTTTCCAAGCAAACTGGCT
4241 TTGCCCTCTCTCTGCCATCCTTGTCCTCCAGAGACTGCACCACCTGTAGCATAGAAAACCACCACCACGGACCTGCCAGC
4321 CATCGGCGCAGCAAACCAGCCAGCTGTTTGCTGCCAAATTCCTTCCTCTCCCAGGTCCAGACCAAATACAAGATCAGCAC
4401 CACACCGTGGTGTTGTCAGGAGCCAAAGCAACAGGAAACAATTCAATGCTGTTGGGTTCGATTCTGAGAGTAGATTTTTC
4481 CAGACATGTCTTTCAGGTGACCCTCAACTACCTCAGGTTTGAAGGCCCTAAATGAAACTGATTACCACTCATAGGGACAA
4561 ACCGAGGGGGTTCGGTTACATCTTGGTGATAATGCAGTTGTCTCAAACTTATAACAGACTCTTTCACATTTCAGTTTGCA
4641 GGGATAGGGTTGGGTTTGTTTTTCTTCTGTTTTTAACCTTTCCCCTGGGTTTCCATTAGGGTAGTTCCTTGAAATGAATT
4721 TCATTTTTCACTGAGTGCCTACCTTCCCAGGGCAGGTGGCCACTGGCTTCTGTTTCCCTCCAACAATACTTTTATTATGG
4801 TATTAAGACCTTTCTTTGTATAATACATTGCATCTGTGTTTTCAATTTTTCAAATAAATATTTCCGCCTGGCAAAAAAAA
4881 AAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgcUCUCACGCCCGGGGUCCUc 5'
             ||||  | |  ||||||| 
Target 5' gtcAGAGCCCAG--CCCAGGAg 3'
 2818 - 2837 151.00 -18.00
2 
miRNA  3' cgcucucaCGCCCGGGGUCCUc 5'
                  ||   :||||||| 
Target 5' gccatcaaGCACTTCCCAGGAt 3'
 1704 - 1725 142.00 -13.60
3 
miRNA  3' cgcucucacgcccGGGGUCCUc 5'
                       :||||||| 
Target 5' tcaaaaaactctcTCCCAGGAc 3'
 1864 - 1885 141.00 -12.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26958565 10 COSMIC
COSN5103337 11 COSMIC
COSN2234791 14 COSMIC
COSN30541823 22 COSMIC
COSN30522967 26 COSMIC
COSN30454548 37 COSMIC
COSN30149567 47 COSMIC
COSN30495993 68 COSMIC
COSN31503233 75 COSMIC
COSN30500386 83 COSMIC
COSN30124620 92 COSMIC
COSN30457738 92 COSMIC
COSN30481189 93 COSMIC
COSN30467159 96 COSMIC
COSN30495198 167 COSMIC
COSN31502323 183 COSMIC
COSN26543966 211 COSMIC
COSN30529943 237 COSMIC
COSN32056955 536 COSMIC
COSN31848470 643 COSMIC
COSN5228211 763 COSMIC
COSN31539647 828 COSMIC
COSN32004788 920 COSMIC
COSN26566801 921 COSMIC
COSN32202140 1029 COSMIC
COSN17037458 1355 COSMIC
COSN8039374 1615 COSMIC
COSN31583932 1640 COSMIC
COSN31562867 1667 COSMIC
COSN4935062 1984 COSMIC
COSN26262689 1989 COSMIC
COSN14836430 1992 COSMIC
COSN19581199 2008 COSMIC
COSN16246132 2233 COSMIC
COSN16415776 2269 COSMIC
COSN27257477 2443 COSMIC
COSN31847111 2444 COSMIC
COSN6891572 2565 COSMIC
COSN2378209 2798 COSMIC
COSN29300467 3031 COSMIC
COSN16448088 3086 COSMIC
COSN20720157 4820 COSMIC
rs1167832 268 GWAS
rs1167827 4324 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781909227 8 dbSNP
rs782069278 14 dbSNP
rs376901000 18 dbSNP
rs374014778 25 dbSNP
rs782084689 28 dbSNP
rs587698901 44 dbSNP
rs369560175 45 dbSNP
rs782142183 46 dbSNP
rs1257489740 47 dbSNP
rs781936563 49 dbSNP
rs782302839 50 dbSNP
rs782709254 51 dbSNP
rs1246333454 53 dbSNP
rs1466296968 72 dbSNP
rs756756105 89 dbSNP
rs1267275611 95 dbSNP
rs145040069 100 dbSNP
rs919140289 114 dbSNP
rs1036047052 123 dbSNP
rs1430387634 124 dbSNP
rs1470060257 127 dbSNP
rs587617396 128 dbSNP
rs587727650 130 dbSNP
rs908970208 135 dbSNP
rs1288904628 137 dbSNP
rs782550232 138 dbSNP
rs985875093 156 dbSNP
rs1303185909 157 dbSNP
rs1323984124 164 dbSNP
rs1228076159 179 dbSNP
rs1266485357 189 dbSNP
rs1331400599 210 dbSNP
rs748710056 211 dbSNP
rs113375400 212 dbSNP
rs1487818169 216 dbSNP
rs1193425123 221 dbSNP
rs921455192 233 dbSNP
rs1270126365 243 dbSNP
rs1472478832 258 dbSNP
rs587598667 267 dbSNP
rs1167832 268 dbSNP
rs1032314475 276 dbSNP
rs1348762895 279 dbSNP
rs1456388701 281 dbSNP
rs1167831 292 dbSNP
rs969159653 319 dbSNP
rs868908855 322 dbSNP
rs1346005961 329 dbSNP
rs1408990681 331 dbSNP
rs41533346 333 dbSNP
rs1352586472 339 dbSNP
rs1224517953 342 dbSNP
rs1013031636 352 dbSNP
rs1289333579 356 dbSNP
rs1319990194 376 dbSNP
rs894552101 384 dbSNP
rs1293148810 395 dbSNP
rs1482993071 400 dbSNP
rs1035536694 411 dbSNP
rs1203481452 414 dbSNP
rs1254391830 418 dbSNP
rs1470982343 419 dbSNP
rs1177419677 426 dbSNP
rs1003095990 430 dbSNP
rs1421556300 431 dbSNP
rs1164862276 432 dbSNP
rs587706150 467 dbSNP
rs1428969331 470 dbSNP
rs1036653671 500 dbSNP
rs1306002825 510 dbSNP
rs1356026481 511 dbSNP
rs941948868 512 dbSNP
rs1283836757 513 dbSNP
rs370447303 519 dbSNP
rs587657012 535 dbSNP
rs868950241 536 dbSNP
rs184977262 537 dbSNP
rs782734917 546 dbSNP
rs35358997 550 dbSNP
rs1438738131 567 dbSNP
rs148240151 579 dbSNP
rs1184920672 580 dbSNP
rs1385286928 581 dbSNP
rs587702505 591 dbSNP
rs587639447 594 dbSNP
rs1421503722 595 dbSNP
rs782051395 598 dbSNP
rs1333218559 603 dbSNP
rs1357667682 612 dbSNP
rs924798010 614 dbSNP
rs1454761540 616 dbSNP
rs1337517947 619 dbSNP
rs978119666 620 dbSNP
rs1226914360 624 dbSNP
rs1300461134 625 dbSNP
rs1340596223 632 dbSNP
rs1219041799 638 dbSNP
rs1276883299 642 dbSNP
rs968981855 643 dbSNP
rs201156494 644 dbSNP
rs1243287966 645 dbSNP
rs1464062567 648 dbSNP
rs1186050962 654 dbSNP
rs1243811628 655 dbSNP
rs1475674899 655 dbSNP
rs368263003 655 dbSNP
rs1171835840 678 dbSNP
rs587765632 680 dbSNP
rs1471118268 698 dbSNP
rs587683030 701 dbSNP
rs991459160 708 dbSNP
rs1388106678 716 dbSNP
rs1432994643 717 dbSNP
rs1320322894 718 dbSNP
rs1327548796 722 dbSNP
rs587652038 723 dbSNP
rs1273481779 726 dbSNP
rs958797431 730 dbSNP
rs587756181 739 dbSNP
rs782007120 740 dbSNP
rs1328006058 742 dbSNP
rs897686282 753 dbSNP
rs1285721784 761 dbSNP
rs1014757938 769 dbSNP
rs754105030 770 dbSNP
rs1198075823 774 dbSNP
rs139438958 775 dbSNP
rs782432164 775 dbSNP
rs587705082 776 dbSNP
rs887680591 778 dbSNP
rs78816005 784 dbSNP
rs1411544298 790 dbSNP
rs1455796706 796 dbSNP
rs782794347 807 dbSNP
rs782614751 810 dbSNP
rs1385717355 812 dbSNP
rs1405361476 817 dbSNP
rs1322128024 829 dbSNP
rs1347868520 833 dbSNP
rs901601459 853 dbSNP
rs1288066058 856 dbSNP
rs1349551844 856 dbSNP
rs1236394691 863 dbSNP
rs1280852816 867 dbSNP
rs1350751332 871 dbSNP
rs1040562871 872 dbSNP
rs1289507348 881 dbSNP
rs587726082 882 dbSNP
rs1222980638 885 dbSNP
rs1250767935 887 dbSNP
rs143148414 902 dbSNP
rs924800105 903 dbSNP
rs977605951 905 dbSNP
rs1364515898 906 dbSNP
rs13228300 913 dbSNP
rs1472513662 920 dbSNP
rs79342140 921 dbSNP
rs1368031911 940 dbSNP
rs1425826558 952 dbSNP
rs1307852310 956 dbSNP
rs1369092711 957 dbSNP
rs587739171 964 dbSNP
rs1389378092 967 dbSNP
rs587661110 971 dbSNP
rs1335911089 972 dbSNP
rs1243474215 979 dbSNP
rs914803164 981 dbSNP
rs991491319 982 dbSNP
rs3801476 986 dbSNP
rs144924500 990 dbSNP
rs1197269539 993 dbSNP
rs1251556183 994 dbSNP
rs782366318 998 dbSNP
rs1442011918 1002 dbSNP
rs981972454 1008 dbSNP
rs1387136866 1024 dbSNP
rs1445840370 1032 dbSNP
rs371597772 1034 dbSNP
rs1168496697 1035 dbSNP
rs1388796670 1039 dbSNP
rs1463858969 1046 dbSNP
rs193173902 1047 dbSNP
rs1168810733 1050 dbSNP
rs1396792524 1051 dbSNP
rs1334167821 1052 dbSNP
rs377595607 1053 dbSNP
rs962133459 1066 dbSNP
rs55859405 1067 dbSNP
rs1305656110 1071 dbSNP
rs1229373541 1076 dbSNP
rs1251654827 1083 dbSNP
rs1344633719 1086 dbSNP
rs782596522 1087 dbSNP
rs1461838685 1089 dbSNP
rs1187934191 1090 dbSNP
rs1006021944 1091 dbSNP
rs1167830 1092 dbSNP
rs1028825771 1106 dbSNP
rs71560474 1111 dbSNP
rs1173794157 1112 dbSNP
rs372251681 1115 dbSNP
rs587688102 1123 dbSNP
rs1319246319 1132 dbSNP
rs1359845179 1133 dbSNP
rs1383823431 1134 dbSNP
rs782303918 1136 dbSNP
rs902232068 1139 dbSNP
rs1330287189 1144 dbSNP
rs1042296950 1145 dbSNP
rs368550179 1148 dbSNP
rs587774262 1149 dbSNP
rs1259015538 1169 dbSNP
rs782336774 1181 dbSNP
rs782534282 1182 dbSNP
rs928650451 1188 dbSNP
rs1201957051 1195 dbSNP
rs377166265 1196 dbSNP
rs587705254 1200 dbSNP
rs1480548842 1203 dbSNP
rs962450059 1210 dbSNP
rs907926501 1211 dbSNP
rs985031458 1226 dbSNP
rs1289390975 1229 dbSNP
rs1389846544 1230 dbSNP
rs951846744 1232 dbSNP
rs1284902995 1239 dbSNP
rs73368367 1241 dbSNP
rs1227979847 1248 dbSNP
rs1305038239 1249 dbSNP
rs1318797591 1250 dbSNP
rs370206763 1254 dbSNP
rs1216514900 1257 dbSNP
rs1265374153 1262 dbSNP
rs587687247 1268 dbSNP
rs1489990846 1272 dbSNP
rs996074307 1288 dbSNP
rs1225250553 1302 dbSNP
rs144048066 1308 dbSNP
rs1480598129 1309 dbSNP
rs782466956 1310 dbSNP
rs1405276803 1316 dbSNP
rs587734292 1319 dbSNP
rs1159148727 1322 dbSNP
rs1384560621 1325 dbSNP
rs587661237 1327 dbSNP
rs1422640907 1330 dbSNP
rs1304770454 1344 dbSNP
rs1365954827 1353 dbSNP
rs1409501316 1366 dbSNP
rs999177268 1373 dbSNP
rs1375714759 1374 dbSNP
rs1224433994 1389 dbSNP
rs587612493 1394 dbSNP
rs1357981277 1406 dbSNP
rs1043451345 1414 dbSNP
rs1293030631 1415 dbSNP
rs587737072 1419 dbSNP
rs1482943932 1421 dbSNP
rs1202789324 1425 dbSNP
rs1230854758 1429 dbSNP
rs1481384467 1431 dbSNP
rs1010654022 1434 dbSNP
rs1241949784 1438 dbSNP
rs781807925 1456 dbSNP
rs1055953425 1465 dbSNP
rs1165376489 1473 dbSNP
rs1385724607 1475 dbSNP
rs937605563 1480 dbSNP
rs1168010016 1486 dbSNP
rs1356513734 1487 dbSNP
rs1443167436 1493 dbSNP
rs1336239345 1495 dbSNP
rs928874463 1495 dbSNP
rs1046164301 1499 dbSNP
rs940660679 1500 dbSNP
rs1454594651 1501 dbSNP
rs1316363331 1502 dbSNP
rs907958611 1510 dbSNP
rs1342027757 1515 dbSNP
rs1213207013 1519 dbSNP
rs1275530572 1521 dbSNP
rs984872897 1522 dbSNP
rs1204768539 1524 dbSNP
rs1242047968 1530 dbSNP
rs2599326 1531 dbSNP
rs1459599351 1534 dbSNP
rs1184830419 1536 dbSNP
rs1243707505 1537 dbSNP
rs375252976 1540 dbSNP
rs1475014124 1543 dbSNP
rs952113697 1544 dbSNP
rs183402903 1547 dbSNP
rs1421387025 1560 dbSNP
rs587598091 1571 dbSNP
rs1410799398 1574 dbSNP
rs1175995535 1579 dbSNP
rs1404100730 1583 dbSNP
rs1471017280 1585 dbSNP
rs921799199 1598 dbSNP
rs974522107 1613 dbSNP
rs1337419087 1647 dbSNP
rs1326410481 1648 dbSNP
rs1429196974 1663 dbSNP
rs1272352187 1665 dbSNP
rs1363073056 1666 dbSNP
rs966375107 1667 dbSNP
rs1262126746 1673 dbSNP
rs1320922447 1680 dbSNP
rs1205039500 1682 dbSNP
rs1018823875 1685 dbSNP
rs1263191940 1693 dbSNP
rs1446429095 1694 dbSNP
rs146672365 1698 dbSNP
rs966437882 1706 dbSNP
rs189627441 1709 dbSNP
rs1475621773 1711 dbSNP
rs1198377062 1713 dbSNP
rs1427494758 1721 dbSNP
rs1481530720 1729 dbSNP
rs1384337844 1736 dbSNP
rs1399523532 1741 dbSNP
rs1320861447 1744 dbSNP
rs1346235201 1745 dbSNP
rs1404756655 1754 dbSNP
rs1343305657 1760 dbSNP
rs113685546 1763 dbSNP
rs1022375570 1764 dbSNP
rs1349347416 1766 dbSNP
rs1010683440 1789 dbSNP
rs782165669 1790 dbSNP
rs1221536826 1805 dbSNP
rs1447465343 1805 dbSNP
rs1266473925 1807 dbSNP
rs1490920514 1808 dbSNP
rs587712039 1816 dbSNP
rs1200392755 1818 dbSNP
rs1363377517 1819 dbSNP
rs587660009 1822 dbSNP
rs1160332780 1823 dbSNP
rs1424556776 1824 dbSNP
rs1301724539 1825 dbSNP
rs1034529228 1827 dbSNP
rs1405874695 1831 dbSNP
rs1323814641 1836 dbSNP
rs1334764518 1838 dbSNP
rs1236286762 1845 dbSNP
rs1001677825 1859 dbSNP
rs587774611 1862 dbSNP
rs1354377234 1872 dbSNP
rs1245151168 1873 dbSNP
rs1045948237 1874 dbSNP
rs1289394302 1879 dbSNP
rs1210139012 1886 dbSNP
rs940930927 1887 dbSNP
rs1436243013 1888 dbSNP
rs886467116 1889 dbSNP
rs1184136436 1901 dbSNP
rs1233491667 1902 dbSNP
rs76211757 1906 dbSNP
rs587666565 1907 dbSNP
rs930744549 1919 dbSNP
rs921999574 1934 dbSNP
rs782017989 1943 dbSNP
rs782766425 1954 dbSNP
rs974551730 1959 dbSNP
rs1167656591 1970 dbSNP
rs763895054 1973 dbSNP
rs944522388 1974 dbSNP
rs782111137 1978 dbSNP
rs781962328 1990 dbSNP
rs1330389321 1991 dbSNP
rs1376972811 1993 dbSNP
rs911708299 1999 dbSNP
rs1451202607 2000 dbSNP
rs1312834706 2011 dbSNP
rs1384850342 2013 dbSNP
rs1245273824 2019 dbSNP
rs587744565 2022 dbSNP
rs978074922 2023 dbSNP
rs1197771189 2025 dbSNP
rs183232064 2026 dbSNP
rs1021998198 2034 dbSNP
rs1181789441 2039 dbSNP
rs1245537586 2043 dbSNP
rs1445746436 2050 dbSNP
rs1371698489 2055 dbSNP
rs1460205851 2058 dbSNP
rs989117416 2061 dbSNP
rs587610004 2066 dbSNP
rs1033387341 2076 dbSNP
rs1468857834 2077 dbSNP
rs1334057998 2078 dbSNP
rs1384965535 2095 dbSNP
rs1001709018 2100 dbSNP
rs782338774 2107 dbSNP
rs1324453076 2112 dbSNP
rs34827101 2113 dbSNP
rs1229253866 2116 dbSNP
rs1279116860 2119 dbSNP
rs1323036105 2133 dbSNP
rs587767435 2138 dbSNP
rs143880784 2142 dbSNP
rs1205050020 2158 dbSNP
rs1260183086 2162 dbSNP
rs115386626 2163 dbSNP
rs1194785828 2174 dbSNP
rs886662745 2176 dbSNP
rs587738852 2178 dbSNP
rs368360470 2179 dbSNP
rs1407647913 2183 dbSNP
rs900603612 2184 dbSNP
rs1039129292 2190 dbSNP
rs944786330 2198 dbSNP
rs1298560330 2200 dbSNP
rs587677313 2202 dbSNP
rs1221912153 2213 dbSNP
rs1285340883 2217 dbSNP
rs1312864683 2218 dbSNP
rs1238331749 2220 dbSNP
rs201417975 2225 dbSNP
rs1259514436 2245 dbSNP
rs1487106171 2247 dbSNP
rs1217865457 2262 dbSNP
rs1268585403 2266 dbSNP
rs978316057 2278 dbSNP
rs587619893 2299 dbSNP
rs945325920 2300 dbSNP
rs1433297484 2302 dbSNP
rs587740408 2303 dbSNP
rs989146901 2304 dbSNP
rs958991169 2309 dbSNP
rs1455258948 2311 dbSNP
rs587666866 2312 dbSNP
rs1402814015 2314 dbSNP
rs1305189240 2319 dbSNP
rs1390913115 2320 dbSNP
rs587595892 2320 dbSNP
rs1304930166 2333 dbSNP
rs782273156 2336 dbSNP
rs981921680 2337 dbSNP
rs1319291749 2338 dbSNP
rs1241498479 2341 dbSNP
rs970871724 2344 dbSNP
rs1024492592 2345 dbSNP
rs28567671 2370 dbSNP
rs1225133980 2373 dbSNP
rs190999117 2374 dbSNP
rs587682814 2390 dbSNP
rs1488591642 2393 dbSNP
rs375420559 2399 dbSNP
rs1247802018 2400 dbSNP
rs1441535358 2405 dbSNP
rs1159198756 2414 dbSNP
rs1384465737 2420 dbSNP
rs1422543432 2425 dbSNP
rs1166583172 2427 dbSNP
rs587627326 2427 dbSNP
rs587725454 2439 dbSNP
rs75296509 2443 dbSNP
rs1248689178 2459 dbSNP
rs1375603383 2459 dbSNP
rs782513114 2459 dbSNP
rs1290998980 2462 dbSNP
rs1322021849 2467 dbSNP
rs1167829 2475 dbSNP
rs995042727 2476 dbSNP
rs1178668931 2477 dbSNP
rs900551357 2479 dbSNP
rs1038993405 2483 dbSNP
rs1009010841 2492 dbSNP
rs782360319 2503 dbSNP
rs1414246823 2508 dbSNP
rs1409666848 2511 dbSNP
rs1168619170 2516 dbSNP
rs587750922 2517 dbSNP
rs1466229237 2524 dbSNP
rs1336138216 2526 dbSNP
rs1404586950 2528 dbSNP
rs776251666 2529 dbSNP
rs1285219257 2533 dbSNP
rs1361717754 2539 dbSNP
rs1213113056 2549 dbSNP
rs1293040375 2554 dbSNP
rs587711957 2558 dbSNP
rs1319494499 2561 dbSNP
rs140199531 2566 dbSNP
rs1261930763 2568 dbSNP
rs186654203 2569 dbSNP
rs1212134353 2580 dbSNP
rs945164608 2589 dbSNP
rs1184517133 2600 dbSNP
rs1426108704 2601 dbSNP
rs915166721 2602 dbSNP
rs1478253381 2611 dbSNP
rs1175879266 2617 dbSNP
rs1427276582 2632 dbSNP
rs1053735621 2646 dbSNP
rs1416190968 2655 dbSNP
rs937906687 2656 dbSNP
rs782212982 2658 dbSNP
rs1429085354 2660 dbSNP
rs1300409045 2661 dbSNP
rs1342030575 2662 dbSNP
rs1218853543 2664 dbSNP
rs1282151707 2672 dbSNP
rs982157905 2684 dbSNP
rs1320816695 2690 dbSNP
rs970523230 2699 dbSNP
rs770439468 2711 dbSNP
rs150664744 2714 dbSNP
rs1279282981 2715 dbSNP
rs983647999 2718 dbSNP
rs950920058 2731 dbSNP
rs782580633 2732 dbSNP
rs142947352 2734 dbSNP
rs1198987717 2744 dbSNP
rs75487474 2745 dbSNP
rs1173188434 2754 dbSNP
rs1479068676 2754 dbSNP
rs1407950487 2758 dbSNP
rs587630498 2761 dbSNP
rs964916989 2766 dbSNP
rs782451667 2768 dbSNP
rs1009289676 2769 dbSNP
rs1302149281 2773 dbSNP
rs782227205 2787 dbSNP
rs374702869 2789 dbSNP
rs1438014904 2791 dbSNP
rs1274893215 2792 dbSNP
rs79322476 2798 dbSNP
rs79441068 2799 dbSNP
rs1288004389 2805 dbSNP
rs890548306 2809 dbSNP
rs1221413723 2810 dbSNP
rs1453517528 2810 dbSNP
rs587700089 2820 dbSNP
rs1199719576 2827 dbSNP
rs782069943 2830 dbSNP
rs1232365723 2832 dbSNP
rs1469104514 2841 dbSNP
rs1042829712 2846 dbSNP
rs1181064876 2847 dbSNP
rs1009644627 2850 dbSNP
rs1424460339 2865 dbSNP
rs781791803 2871 dbSNP
rs1162005197 2876 dbSNP
rs1388183455 2893 dbSNP
rs587613388 2893 dbSNP
rs781908236 2894 dbSNP
rs116104889 2899 dbSNP
rs1311414804 2901 dbSNP
rs926505569 2902 dbSNP
rs1377492297 2918 dbSNP
rs1046069168 2919 dbSNP
rs949040005 2925 dbSNP
rs908195010 2930 dbSNP
rs1358815427 2932 dbSNP
rs1210644236 2939 dbSNP
rs1272483656 2952 dbSNP
rs782667457 2957 dbSNP
rs1436154905 2966 dbSNP
rs982978351 2979 dbSNP
rs931046620 2982 dbSNP
rs11976516 2983 dbSNP
rs1444539580 2990 dbSNP
rs1182202811 2996 dbSNP
rs973513131 3002 dbSNP
rs964949490 3003 dbSNP
rs1463629107 3005 dbSNP
rs1018234276 3019 dbSNP
rs1400987524 3030 dbSNP
rs1451814684 3049 dbSNP
rs746484138 3055 dbSNP
rs1342054691 3058 dbSNP
rs1245160189 3073 dbSNP
rs987497137 3077 dbSNP
rs1269861696 3080 dbSNP
rs1316241664 3082 dbSNP
rs587617715 3086 dbSNP
rs1258789921 3087 dbSNP
rs1461311088 3093 dbSNP
rs1020950225 3095 dbSNP
rs1199259358 3105 dbSNP
rs1258794134 3117 dbSNP
rs1009677348 3123 dbSNP
rs782758895 3125 dbSNP
rs782075610 3126 dbSNP
rs1192865839 3133 dbSNP
rs1372199499 3135 dbSNP
rs1476620299 3135 dbSNP
rs1172272514 3145 dbSNP
rs1423701432 3151 dbSNP
rs1468777029 3154 dbSNP
rs1301015798 3157 dbSNP
rs782416678 3170 dbSNP
rs1317345402 3174 dbSNP
rs1338766778 3174 dbSNP
rs779498072 3175 dbSNP
rs1002000316 3176 dbSNP
rs1322924551 3179 dbSNP
rs1231112415 3194 dbSNP
rs781798994 3203 dbSNP
rs1046781598 3204 dbSNP
rs782683785 3210 dbSNP
rs1261479165 3212 dbSNP
rs1487135325 3214 dbSNP
rs1195409610 3215 dbSNP
rs1263367982 3222 dbSNP
rs1432122678 3234 dbSNP
rs868933252 3237 dbSNP
rs886798537 3242 dbSNP
rs1379348964 3258 dbSNP
rs1466458046 3263 dbSNP
rs1157840539 3266 dbSNP
rs1358406440 3267 dbSNP
rs367974587 3274 dbSNP
rs1345069438 3278 dbSNP
rs931075980 3279 dbSNP
rs1385211904 3281 dbSNP
rs1303465061 3282 dbSNP
rs782156967 3283 dbSNP
rs1313368903 3288 dbSNP
rs919652879 3289 dbSNP
rs371553830 3290 dbSNP
rs1286312256 3298 dbSNP
rs1487942433 3300 dbSNP
rs943506444 3301 dbSNP
rs910710205 3310 dbSNP
rs988166130 3313 dbSNP
rs1177938053 3317 dbSNP
rs1378359744 3318 dbSNP
rs1421308975 3323 dbSNP
rs587764392 3328 dbSNP
rs1021401055 3335 dbSNP
rs1365227204 3338 dbSNP
rs782544422 3340 dbSNP
rs1295418041 3341 dbSNP
rs1368419008 3343 dbSNP
rs1390830289 3344 dbSNP
rs1379700651 3346 dbSNP
rs1241391911 3360 dbSNP
rs1314759794 3361 dbSNP
rs587678659 3365 dbSNP
rs1320814090 3369 dbSNP
rs1218946900 3389 dbSNP
rs988117656 3402 dbSNP
rs587623153 3414 dbSNP
rs958113265 3421 dbSNP
rs1197401029 3427 dbSNP
rs1236333576 3431 dbSNP
rs1441430726 3447 dbSNP
rs1179090132 3470 dbSNP
rs183300075 3484 dbSNP
rs1002283341 3491 dbSNP
rs1167184221 3492 dbSNP
rs905064769 3497 dbSNP
rs1465190168 3502 dbSNP
rs587672350 3507 dbSNP
rs587599252 3508 dbSNP
rs782147618 3512 dbSNP
rs587724850 3521 dbSNP
rs75801816 3528 dbSNP
rs78407086 3537 dbSNP
rs1377438668 3538 dbSNP
rs587639183 3549 dbSNP
rs190784856 3550 dbSNP
rs1321922408 3555 dbSNP
rs769092802 3564 dbSNP
rs1255598916 3577 dbSNP
rs587710380 3578 dbSNP
rs995093311 3593 dbSNP
rs587654896 3594 dbSNP
rs1482173266 3596 dbSNP
rs1183333191 3603 dbSNP
rs1414861502 3617 dbSNP
rs1477601366 3617 dbSNP
rs1039460074 3618 dbSNP
rs942462492 3620 dbSNP
rs1168703763 3623 dbSNP
rs1425856114 3624 dbSNP
rs910733925 3629 dbSNP
rs1466146522 3630 dbSNP
rs1334119109 3634 dbSNP
rs1051924277 3645 dbSNP
rs587760001 3646 dbSNP
rs587695482 3647 dbSNP
rs1303757366 3648 dbSNP
rs1379523526 3650 dbSNP
rs933579828 3656 dbSNP
rs1275845976 3657 dbSNP
rs1319399351 3657 dbSNP
rs1218671870 3667 dbSNP
rs1277862410 3675 dbSNP
rs6953853 3676 dbSNP
rs587648670 3685 dbSNP
rs1237835832 3686 dbSNP
rs1488120356 3687 dbSNP
rs148560744 3697 dbSNP
rs1265557866 3699 dbSNP
rs1478201808 3706 dbSNP
rs1172046140 3713 dbSNP
rs1423730300 3716 dbSNP
rs1416649534 3720 dbSNP
rs1177319231 3730 dbSNP
rs1360299073 3731 dbSNP
rs1491464766 3732 dbSNP
rs1295999984 3733 dbSNP
rs1430893255 3733 dbSNP
rs1491384589 3733 dbSNP
rs782284084 3733 dbSNP
rs1220861675 3734 dbSNP
rs1279169683 3735 dbSNP
rs1352756000 3736 dbSNP
rs1214116075 3737 dbSNP
rs1288482973 3738 dbSNP
rs1198328673 3747 dbSNP
rs1245038432 3747 dbSNP
rs1488721080 3747 dbSNP
rs925271693 3755 dbSNP
rs1192282860 3766 dbSNP
rs1380186290 3768 dbSNP
rs1418283384 3773 dbSNP
rs1160804916 3777 dbSNP
rs1362113446 3779 dbSNP
rs1400928321 3793 dbSNP
rs1322372588 3797 dbSNP
rs1347625843 3808 dbSNP
rs1437906195 3829 dbSNP
rs1304095679 3831 dbSNP
rs1376032077 3836 dbSNP
rs1237738752 3841 dbSNP
rs1311177176 3842 dbSNP
rs1351741712 3846 dbSNP
rs1209480789 3869 dbSNP
rs1287905896 3871 dbSNP
rs980878120 3872 dbSNP
rs1222339992 3877 dbSNP
rs1238157641 3878 dbSNP
rs969489395 3896 dbSNP
rs1025243885 3904 dbSNP
rs1180975139 3906 dbSNP
rs186377581 3907 dbSNP
rs1381301035 3920 dbSNP
rs1472641310 3922 dbSNP
rs1162289295 3928 dbSNP
rs1388068646 3935 dbSNP
rs1013395641 3943 dbSNP
rs1325954772 3949 dbSNP
rs587692378 3949 dbSNP
rs1399543672 3952 dbSNP
rs1444457125 3974 dbSNP
rs1333216137 3975 dbSNP
rs1336128904 3984 dbSNP
rs1243741387 3987 dbSNP
rs182089327 3991 dbSNP
rs1358715612 3996 dbSNP
rs1025480649 3998 dbSNP
rs995373229 4000 dbSNP
rs879991473 4004 dbSNP
rs1456870418 4005 dbSNP
rs587764373 4009 dbSNP
rs587705387 4010 dbSNP
rs1039326176 4016 dbSNP
rs1185838367 4029 dbSNP
rs782661927 4037 dbSNP
rs1473571185 4039 dbSNP
rs587647916 4040 dbSNP
rs1165085868 4046 dbSNP
rs1422302778 4051 dbSNP
rs587750157 4052 dbSNP
rs1397058831 4055 dbSNP
rs1395294606 4057 dbSNP
rs1342561929 4069 dbSNP
rs1415616468 4070 dbSNP
rs1277741946 4086 dbSNP
rs1167828 4096 dbSNP
rs1220504491 4107 dbSNP
rs1252456010 4129 dbSNP
rs933471036 4141 dbSNP
rs914064901 4142 dbSNP
rs1258686600 4143 dbSNP
rs1052726874 4149 dbSNP
rs1486168322 4156 dbSNP
rs780353271 4157 dbSNP
rs1261963044 4158 dbSNP
rs1476565673 4187 dbSNP
rs1195188742 4194 dbSNP
rs936891505 4196 dbSNP
rs1373617320 4200 dbSNP
rs782252876 4218 dbSNP
rs1170659170 4237 dbSNP
rs1404104875 4245 dbSNP
rs980741826 4247 dbSNP
rs1297854175 4254 dbSNP
rs1435032439 4254 dbSNP
rs188256869 4260 dbSNP
rs1338647637 4266 dbSNP
rs1401967703 4270 dbSNP
rs1296380008 4274 dbSNP
rs77222108 4276 dbSNP
rs1231724223 4278 dbSNP
rs1258213785 4286 dbSNP
rs992407134 4303 dbSNP
rs372848854 4308 dbSNP
rs369103365 4309 dbSNP
rs782262534 4315 dbSNP
rs1187835889 4319 dbSNP
rs1167827 4324 dbSNP
rs1017908136 4327 dbSNP
rs782484983 4328 dbSNP
rs1196674391 4336 dbSNP
rs1396769793 4341 dbSNP
rs587714363 4344 dbSNP
rs1454567502 4346 dbSNP
rs1157794967 4348 dbSNP
rs890879340 4366 dbSNP
rs587657021 4374 dbSNP
rs1289606990 4375 dbSNP
rs1390110666 4380 dbSNP
rs1385109857 4405 dbSNP
rs374502352 4406 dbSNP
rs79298231 4407 dbSNP
rs1372330395 4409 dbSNP
rs185785385 4410 dbSNP
rs1351133678 4413 dbSNP
rs1217517344 4426 dbSNP
rs1260882542 4429 dbSNP
rs1487891634 4433 dbSNP
rs1207504751 4444 dbSNP
rs1052594403 4446 dbSNP
rs936922186 4456 dbSNP
rs782424740 4457 dbSNP
rs782572361 4459 dbSNP
rs1378265428 4460 dbSNP
rs1420583781 4466 dbSNP
rs587641356 4480 dbSNP
rs782441834 4486 dbSNP
rs587749508 4496 dbSNP
rs1368061170 4497 dbSNP
rs781894158 4499 dbSNP
rs1295328341 4501 dbSNP
rs782366280 4504 dbSNP
rs1446682096 4507 dbSNP
rs1329842082 4511 dbSNP
rs1379583809 4517 dbSNP
rs79072232 4526 dbSNP
rs1307290513 4528 dbSNP
rs587660265 4530 dbSNP
rs1320721881 4532 dbSNP
rs1242064084 4533 dbSNP
rs930044175 4533 dbSNP
rs1274491232 4534 dbSNP
rs1468492148 4534 dbSNP
rs1197939311 4540 dbSNP
rs587774547 4541 dbSNP
rs1481503329 4546 dbSNP
rs973848480 4552 dbSNP
rs1255783233 4563 dbSNP
rs962619113 4566 dbSNP
rs1422283866 4574 dbSNP
rs1167264784 4579 dbSNP
rs1418687892 4606 dbSNP
rs1465111989 4614 dbSNP
rs1169204747 4615 dbSNP
rs1356739921 4616 dbSNP
rs1443448973 4617 dbSNP
rs1302605553 4623 dbSNP
rs1378064223 4625 dbSNP
rs1393939570 4625 dbSNP
rs781501329 4627 dbSNP
rs1334951479 4628 dbSNP
rs1217430907 4634 dbSNP
rs1256130250 4645 dbSNP
rs1309149777 4653 dbSNP
rs587705140 4675 dbSNP
rs1255185352 4676 dbSNP
rs1482121968 4688 dbSNP
rs782059535 4693 dbSNP
rs985773871 4700 dbSNP
rs782584651 4701 dbSNP
rs955106738 4716 dbSNP
rs1029724182 4720 dbSNP
rs7793647 4723 dbSNP
rs587772547 4735 dbSNP
rs1191569474 4745 dbSNP
rs35727486 4749 dbSNP
rs1422326106 4754 dbSNP
rs891525013 4776 dbSNP
rs587698525 4780 dbSNP
rs1357789556 4793 dbSNP
rs1436926136 4798 dbSNP
rs1314350175 4802 dbSNP
rs1355668024 4815 dbSNP
rs180900752 4827 dbSNP
rs1398889884 4828 dbSNP
rs1275750313 4831 dbSNP
rs143125579 4836 dbSNP
rs1215102670 4837 dbSNP
rs1277753425 4852 dbSNP
rs1310255506 4854 dbSNP
rs1212693891 4865 dbSNP
rs1281373025 4866 dbSNP
rs1488069649 4868 dbSNP
rs1000996471 4871 dbSNP
rs904111727 4874 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgcucucaCGCCCGGGGUCcuc 5'
                  ||   :|||||   
Target 5' ----ucaaGCACUUCCCAG--- 3'
 		1 - 15
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000336926.6 | 3UTR | UCAAGCACUUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
190 hsa-miR-1343-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT106691 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT139902 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT165720 PANK3 pantothenate kinase 3 2 2
MIRT248351 CBX5 chromobox 5 2 2
MIRT286658 ZNF207 zinc finger protein 207 2 6
MIRT382505 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT444443 PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 2 2
MIRT446605 HIP1 huntingtin interacting protein 1 2 2
MIRT447106 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT465216 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT465244 TRIM44 tripartite motif containing 44 2 2
MIRT467950 SLC16A1 solute carrier family 16 member 1 2 2
MIRT473956 LRRC58 leucine rich repeat containing 58 2 2
MIRT478522 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479275 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT480078 CALR calreticulin 2 2
MIRT481221 ATXN7L3 ataxin 7 like 3 2 2
MIRT481967 AMOTL2 angiomotin like 2 2 2
MIRT483021 KHSRP KH-type splicing regulatory protein 2 4
MIRT485625 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT487102 SCARF2 scavenger receptor class F member 2 2 2
MIRT492517 RAB15 RAB15, member RAS oncogene family 2 4
MIRT492543 PRX periaxin 2 6
MIRT504979 ZNF704 zinc finger protein 704 2 6
MIRT506171 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 4
MIRT507280 FEM1B fem-1 homolog B 2 2
MIRT520171 WBP2 WW domain binding protein 2 2 4
MIRT521288 RRAGD Ras related GTP binding D 2 4
MIRT522080 NUP50 nucleoporin 50 2 4
MIRT525769 SOD2 superoxide dismutase 2 2 2
MIRT526403 TFAM transcription factor A, mitochondrial 2 2
MIRT528554 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT528709 S100A2 S100 calcium binding protein A2 2 2
MIRT531516 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT538023 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT539555 CNKSR3 CNKSR family member 3 2 4
MIRT540032 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540223 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540240 RGS17 regulator of G protein signaling 17 2 2
MIRT540864 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT540890 SRSF9 serine and arginine rich splicing factor 9 2 2
MIRT541327 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT541846 PLIN5 perilipin 5 2 2
MIRT546218 TNRC18P2 trinucleotide repeat containing 18 pseudogene 2 2 4
MIRT550019 BAG1 BCL2 associated athanogene 1 2 2
MIRT551430 F2 coagulation factor II, thrombin 2 2
MIRT558608 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT564309 CCNT1 cyclin T1 2 2
MIRT565287 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT571944 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT572138 DESI1 desumoylating isopeptidase 1 2 2
MIRT572262 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT573586 CERS1 ceramide synthase 1 2 2
MIRT574114 CDCP1 CUB domain containing protein 1 2 2
MIRT610657 SASH1 SAM and SH3 domain containing 1 2 2
MIRT611150 ZNF486 zinc finger protein 486 2 2
MIRT613491 ZNF488 zinc finger protein 488 2 2
MIRT613997 KPNA5 karyopherin subunit alpha 5 2 2
MIRT614805 RIOK3 RIO kinase 3 2 2
MIRT616094 HOXB5 homeobox B5 2 2
MIRT617334 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617376 FAM227A family with sequence similarity 227 member A 2 2
MIRT620884 ANO7 anoctamin 7 2 2
MIRT620917 LRRTM2 leucine rich repeat transmembrane neuronal 2 2 2
MIRT621216 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT622781 PGK1 phosphoglycerate kinase 1 2 2
MIRT624559 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT626014 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626359 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT627476 STRN striatin 2 2
MIRT629250 KDM2B lysine demethylase 2B 2 2
MIRT630531 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT630769 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT631296 CBS cystathionine-beta-synthase 2 2
MIRT633131 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT634875 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific 2 2
MIRT635337 RBL1 RB transcriptional corepressor like 1 2 2
MIRT636947 APTX aprataxin 2 2
MIRT637799 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638619 GSR glutathione-disulfide reductase 2 4
MIRT639803 AHCY adenosylhomocysteinase 2 2
MIRT640389 ZNF785 zinc finger protein 785 2 2
MIRT642194 SMAGP small cell adhesion glycoprotein 2 2
MIRT643014 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT645119 HES2 hes family bHLH transcription factor 2 2 2
MIRT645637 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT646035 NPR1 natriuretic peptide receptor 1 2 2
MIRT646560 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT647782 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT647956 FBXO31 F-box protein 31 2 2
MIRT648085 FAM192A family with sequence similarity 192 member A 2 2
MIRT648666 ZNF626 zinc finger protein 626 2 2
MIRT649241 TRIM65 tripartite motif containing 65 2 2
MIRT649300 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT650509 UFM1 ubiquitin fold modifier 1 2 2
MIRT651385 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT651808 USP49 ubiquitin specific peptidase 49 2 2
MIRT652468 TMEM181 transmembrane protein 181 2 2
MIRT652580 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT653026 STX1B syntaxin 1B 2 2
MIRT654759 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT655195 PHAX phosphorylated adaptor for RNA export 2 2
MIRT655530 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT655890 NEK9 NIMA related kinase 9 2 2
MIRT656562 LYRM7 LYR motif containing 7 2 2
MIRT657192 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657807 GJD3 gap junction protein delta 3 2 2
MIRT658692 EMC3 ER membrane protein complex subunit 3 2 2
MIRT660201 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660982 ABHD2 abhydrolase domain containing 2 2 2
MIRT661254 FANCA Fanconi anemia complementation group A 2 2
MIRT661818 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT665575 TUBD1 tubulin delta 1 2 2
MIRT666455 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666512 RNF170 ring finger protein 170 2 2
MIRT666968 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT667272 NAV1 neuron navigator 1 2 2
MIRT668150 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT668327 FKBP5 FK506 binding protein 5 2 2
MIRT669302 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT671678 ADK adenosine kinase 2 2
MIRT673597 HPSE heparanase 2 2
MIRT673747 ZNF333 zinc finger protein 333 2 2
MIRT674805 FAM229B family with sequence similarity 229 member B 2 2
MIRT675134 ZNF347 zinc finger protein 347 2 2
MIRT675284 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675389 SVOP SV2 related protein 2 2
MIRT675786 MED28 mediator complex subunit 28 2 2
MIRT676149 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676557 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676642 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676709 METTL14 methyltransferase like 14 2 2
MIRT676807 SHROOM4 shroom family member 4 2 2
MIRT677083 SMIM15 small integral membrane protein 15 2 2
MIRT677191 MURC caveolae associated protein 4 2 2
MIRT677271 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677343 POC1A POC1 centriolar protein A 2 2
MIRT677502 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677520 OCIAD2 OCIA domain containing 2 2 2
MIRT677617 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677657 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677721 SSR1 signal sequence receptor subunit 1 2 2
MIRT677797 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678142 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678205 CSNK1E casein kinase 1 epsilon 2 2
MIRT678374 VTA1 vesicle trafficking 1 2 2
MIRT678706 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT679037 LACTB lactamase beta 2 2
MIRT679078 PURB purine rich element binding protein B 2 2
MIRT679134 SYK spleen associated tyrosine kinase 2 2
MIRT679293 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679739 CABP4 calcium binding protein 4 2 2
MIRT679944 AS3MT arsenite methyltransferase 2 2
MIRT679974 E2F2 E2F transcription factor 2 2 2
MIRT680386 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT683626 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683899 PSMB9 proteasome subunit beta 9 2 2
MIRT684170 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684228 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685398 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686251 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687511 NCKAP1 NCK associated protein 1 2 2
MIRT688241 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688312 FAM151B family with sequence similarity 151 member B 2 2
MIRT688730 CNDP1 carnosine dipeptidase 1 2 2
MIRT689029 ANGPTL3 angiopoietin like 3 2 2
MIRT692514 PARD3 par-3 family cell polarity regulator 2 2
MIRT693728 ACACA acetyl-CoA carboxylase alpha 2 2
MIRT698886 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT702564 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT709949 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710157 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT710225 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT711539 MSH3 mutS homolog 3 2 2
MIRT712444 KHNYN KH and NYN domain containing 2 2
MIRT712458 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT714696 MT1A metallothionein 1A 2 2
MIRT715306 POLR2E RNA polymerase II subunit E 2 2
MIRT716599 MPPED1 metallophosphoesterase domain containing 1 2 2
MIRT717602 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT718824 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT720407 SPRED3 sprouty related EVH1 domain containing 3 2 2
MIRT720503 PHKG2 phosphorylase kinase catalytic subunit gamma 2 2 2
MIRT722479 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT722519 PLXNA2 plexin A2 2 2
MIRT723308 PRKCH protein kinase C eta 2 2
MIRT724332 RNPEPL1 arginyl aminopeptidase like 1 2 2
MIRT732625 DUOX2 dual oxidase 2 1 0
MIRT733418 LINC02323 long intergenic non-protein coding RNA 2323 3 0
MIRT736453 TGFB1 transforming growth factor beta 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1343 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1343 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-1343-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-1343-3p Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-1343-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1343-3p Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1343-3p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-1343-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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