pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SPTY2D1   
Synonyms Spt2
Description SPT2 chromatin protein domain containing 1
Transcript NM_194285   
Expression
Putative miRNA Targets on SPTY2D1
3'UTR of SPTY2D1
(miRNA target sites are highlighted)
>SPTY2D1|NM_194285|3'UTR
   1 CTGCTGCTTTTATTTTTGTGAAATTCTAGAGCTGCTCTGCTGCAAGGATTTCCTGCCTTCAGACTGAAGAAGCCCCCTTA
  81 TCATTTTAGATTTATACTTGGGTACTCAAGGAGAAGGAATGCATACTGTCATTTGCAGGCTGTCATTTGAGCATAAAATA
 161 TTTTCAGATATTTTCCAGGGTGAAATCTGTAATGCAGATGATATAATGCCCACTTGTGCTCTTATGAAGTTAACTGTTCA
 241 CAGATGCCAGCCTTGATCCTGATGAGCTATGCACTCTAATGTGGGGCCACTCACCAGTCAGCCAATCTTTTATTGTTCCT
 321 TTGCTACTTTGAAAGGAAAAAAAAGGTTGTCTCTTGATTTCTGTAATTCTTCTGCTGATCTGTGAGTAGGGCACTGCCCT
 401 GCTCCCAATCAAACTTAGTCTTTTTATGAGAAACCTGGACCTTCCATGAATGTTGCCAGCAATAAAGTGACTTGTCCTAA
 481 TCTATGGATTGAGAACTTGAAAATGTAGAGTAGAATTTATAACTATCATATGGATGTCATCCTGTGACTTTGAAGTACAA
 561 AGTAGAATAAATTCTGTATTCATGGATTGGATGCTGAGCATTCTTACTCATTAATTTAGGTGGCTAGGAATTAATGAAAA
 641 AATTTTCAAGTTAAAATACAGGTTATAACAGTATAATATTCTTTTCTAAGTTTTCCTTTCAGATTTACTGTTATGTTGGC
 721 TTTAGTGTAAGACAAGGTCACTGTGCTGATTGATTTTTATCTAAAAAAATTCATTTTTATATCGAAGAAAAAATATTTTA
 801 TTCAAACATTAGATTTGAAAGAGTAATAGTTTATAAAATAAGGAAGTAACATGTGAGGCTCTCCCCTCCTCCCCTCCCCC
 881 ATCATAAAGATATTTTGAAATCCCAAGGTGCCCTCATACCTCTTGACATTAATGACTTCATTTTTTAGCTTGAATTTGTT
 961 AGCAAATATTAATGGCAGAAAACCAAAAACTAAATTTATGGTATCGAGAGCACCACCTTCTCTTTTTGCCCATATTGCAC
1041 TTTGATTTCAAACTATGCACTGTGAAGAGATTTTTTTCCCCAGGTAGGAAGGGATGTTCCCTGTTATCGTTATTTTACTG
1121 AGCTGTGGAAACTCATTTTTACCCTTTTTAAAGTCATAAATATGGACTTAATAGCCCTTAACCTTCAAGTCCAAGCAGTT
1201 CCAATCAGGCTGACTTAGGATCATGCTGGAAGGAAGCCAAGTCTCAAGAACTGTCAGCAACAGAAAATGAGATATGATGC
1281 TAGAGAGCATTTGTCCTTGACTGTAAGTACAGAGGCTTAGGGGAAGTGAGACATAAGCTTGTAGGAATAATAAACGTTCT
1361 ACAATAAACGTTTTGGCTATCTTAAGCCATTGTATGGGGGGGATTAGGAAGTAGGAGGGATTGTCCTACAACAGGCCCTT
1441 ATACTTCAACAGCCCAAATATTTTGGTTTATTCCTTTTTATCCATAAAGTCTTTATTCTTCAAGTTTGGGTATTATAGAT
1521 TACCATTGTTAGCCTCCCTTAATGGGACCATATGAGCCAGGCTTTTAAGACGGACTCATTTTGAATTGAGTTTCAAACTT
1601 TGAAAGTGCAAGGATTTAATTTTTAAGTTGAATCCCATGAAAGGTGTCATCATCACTAGGAATAACACCCTTTGTAACTA
1681 CATATAGAACTGTTACAATGGTAGCAGAAAATCCTATTGATTTCATCTCACCCATTTCAGATACCTTCAGTGAAATTAAG
1761 GGTAGTGTGATGTCCCATGTAATAAAACAGGCTTAGAACATCAATTCCTCTGCTGCCATTTATGTGCTTTTATTCCCCCT
1841 TCAAAAATTTTTTATTGGATATATATATTTTTCAGTATTCAGACTCTGAAATCTGTCATTACAATCAAGTGCTTGTCACA
1921 GCTGAAAGATTTCTGGTGGCTTAAAGTTTACTAGCAGTAAATTTATGATATGGTACAGTTCTTTGTACAGAAAGGCACCA
2001 TTATGTTAGAATAAATTTCCAGAACTTAGTGGGAAGAATCAGGTTTTAACCTTGTGTGTCTGTTACTTCTGAGTGCATTT
2081 CTATAATATAAATGTTGATTTGCGTCAACATTATAAAAGAGCACTTCTGTGGCTCATTTAAAAGAAAAAAAAGGTTAAGT
2161 CTTTTAAATTTTGGCCTTGTTTCCAAATCCTGTCTTCCATGTTGTTTTTCTGCACTTCCTGACCACTCTTATAAAAAGCT
2241 CACAAACCTTTGAAGAAACTGGAGTAGGCTGTTATTTCATTAAGGTTTACAAATTAAATGCTTGATTTTTAATGTATTCT
2321 CTACTGTTTTGATTTTTGGATTTTCTTAATTCAACATTTGAAGATGTGCCTTTTGGGTAATGTTAATCACGAATGTAGTA
2401 ATATTTCATGATTGTAATAATGTTACATGATCATGGGTGTGGCATTCTCTAACAAATGATGTGAAAGGAAAGTAGTTTTC
2481 ATAAAACTCATGGCTCTGATTGCACAGTCCCACTTGCTTTTGATATTGCTATGTCAAAGCAAAGGGCACTTCTTTTAAGG
2561 CTACTTTCAGAACTTTGTATTTTCGCTAAACTATAAATGCAGTTGTGTCCAGTTGGAGGCCAGGGTACCACATGTCACAG
2641 GCGGCCTTACATGTGTGCCGTGAAAAGGTTCAAAGACCGTTAACAAAAAAGTAAGTCTGGCCGGGCATGGTGGCTCAAGC
2721 CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACTTGAGACCAGGAGTTCGAGACCAGCCTGGCCAACATGG
2801 TGTGAGACCCCGTCTCTACTAAAAATAAAAAAATTAGCCGGGTGCGGTGGCACACACCTGTAATCCCAGCTACCGGGGAG
2881 GCTGAGGCAGGAGAATCGCTAGAACCTGGGAGGCGGAGGTTGCAGTCAGCCAAGATAGCACCACTGCACTCCAGGCTGGG
2961 TGACAGAGCGAGACTCCATGTCAAAAAAAAAAGAATGTGGGAACTCAAATTTTCATTTTTAATGTAATCCCCAAGATTTT
3041 CTCCAAGAAATAAATTGTTGTTTTGTATTTTGTAACTTAAAAGCAGCTATTGGTAAATTTCTGAGATATAGCAGGAGACC
3121 AAAACATGTTTGGAAAGAGAATAAATATATGAAGAGAGACTGGTTGTTTTATTTTCAATGTATTGAATATATTAGACTAC
3201 TATTTATTTTCTGAGTGGATGTGATTAAATATTCAGACGTTTAGTGTATGATTAAGAGTGAGATAGAGATTTCTTTGGAG
3281 TAATTAAATCCATCCTGTCTTTTACACAATGGACAAATCAAGTTAAAAAAATTTTTAGATAGCTTAGCTTGTTTTCTGGT
3361 GCTGTTGACCTGCAAGAGAATATACTTTTGCATATACAGGTGAAAGTTTTGCAATTTATGTATACAAGAAATTGTAGGCA
3441 TTAAAAATATTTTATTGATAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggACC--UACGUUUAAAAu 5'
             |||  |  |||||||| 
Target 5' atgTGGGAACTCAAATTTTc 3'
2995 - 3014 149.00 -6.70
2
miRNA  3' aggacCUACGUUUAAAAu 5'
               |:|| ||:|||| 
Target 5' atacaGGTGAAAGTTTTg 3'
3394 - 3411 137.00 -7.30
3
miRNA  3' agGAC-CUACGUUUAAAAu 5'
            ||| || | |:||||| 
Target 5' caCTGTGAAG-AGATTTTt 3'
1058 - 1075 135.00 -5.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30467821 46 COSMIC
COSN30152699 66 COSMIC
COSN30169613 72 COSMIC
COSN30140175 73 COSMIC
COSN30498243 100 COSMIC
COSN31499183 167 COSMIC
COSN30112349 172 COSMIC
COSN1080208 187 COSMIC
COSN32057466 248 COSMIC
COSN31603799 308 COSMIC
COSN22177227 331 COSMIC
COSN23013373 354 COSMIC
COSN20108029 528 COSMIC
COSN21309882 550 COSMIC
COSN10082453 560 COSMIC
COSN30544244 599 COSMIC
COSN26240770 609 COSMIC
COSN30367556 743 COSMIC
COSN10082452 831 COSMIC
COSN30173424 879 COSMIC
COSN26638285 902 COSMIC
COSN31545867 1070 COSMIC
COSN31515703 1147 COSMIC
COSN28815372 1165 COSMIC
COSN17037515 1226 COSMIC
COSN26563420 1571 COSMIC
COSN25632422 1728 COSMIC
COSN30163130 2127 COSMIC
COSN16831622 2327 COSMIC
COSN31583313 2458 COSMIC
COSN26650524 2497 COSMIC
COSN31533635 2502 COSMIC
COSN31609011 2552 COSMIC
COSN15127480 2568 COSMIC
COSN31533335 2623 COSMIC
COSN31561686 2659 COSMIC
COSN28707096 2678 COSMIC
COSN22796349 2684 COSMIC
COSN28687608 2752 COSMIC
COSN30538616 3014 COSMIC
COSN31595877 3061 COSMIC
COSN19469023 3206 COSMIC
COSN13315410 3221 COSMIC
COSN22170664 3230 COSMIC
COSN26484230 3261 COSMIC
COSN30702042 3331 COSMIC
COSN25016189 3344 COSMIC
COSN26581953 3351 COSMIC
COSN31601266 3413 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780197364 2 dbSNP
rs143830299 3 dbSNP
rs767264302 6 dbSNP
rs566162296 11 dbSNP
rs748924928 16 dbSNP
rs547606485 20 dbSNP
rs1373877571 27 dbSNP
rs1180713120 28 dbSNP
rs1160625418 29 dbSNP
rs770871950 39 dbSNP
rs762794878 42 dbSNP
rs1431601939 48 dbSNP
rs1431353560 50 dbSNP
rs1368758675 53 dbSNP
rs1345719425 57 dbSNP
rs909861430 58 dbSNP
rs1296132467 69 dbSNP
rs984097984 71 dbSNP
rs1185223352 73 dbSNP
rs1359453284 75 dbSNP
rs758620832 77 dbSNP
rs1364952001 80 dbSNP
rs970081050 107 dbSNP
rs1318063353 115 dbSNP
rs915987666 119 dbSNP
rs1284366550 120 dbSNP
rs1188860631 122 dbSNP
rs1223575531 125 dbSNP
rs186842565 132 dbSNP
rs1281612280 136 dbSNP
rs1028393342 149 dbSNP
rs568133173 153 dbSNP
rs1408557706 176 dbSNP
rs992966202 178 dbSNP
rs551831482 181 dbSNP
rs1156577264 194 dbSNP
rs750648544 200 dbSNP
rs1379511756 202 dbSNP
rs1424893141 206 dbSNP
rs550035190 210 dbSNP
rs1435055024 236 dbSNP
rs960465749 239 dbSNP
rs778762001 240 dbSNP
rs900992381 260 dbSNP
rs1449706144 262 dbSNP
rs1307513329 263 dbSNP
rs1353521941 264 dbSNP
rs1247179535 267 dbSNP
rs1244272763 273 dbSNP
rs1292221138 274 dbSNP
rs1019408433 278 dbSNP
rs999489485 280 dbSNP
rs968962886 284 dbSNP
rs1481561254 289 dbSNP
rs1021934999 300 dbSNP
rs1237339779 306 dbSNP
rs1444947709 316 dbSNP
rs1165258678 321 dbSNP
rs999096454 326 dbSNP
rs903083030 327 dbSNP
rs1382547075 328 dbSNP
rs1298575650 332 dbSNP
rs1433224226 335 dbSNP
rs1324756806 337 dbSNP
rs1317729874 342 dbSNP
rs1010570715 345 dbSNP
rs1329824152 345 dbSNP
rs1355825801 345 dbSNP
rs1376828643 348 dbSNP
rs1453772102 352 dbSNP
rs1381520009 358 dbSNP
rs1042965433 363 dbSNP
rs1228007332 365 dbSNP
rs777710358 374 dbSNP
rs1049490027 376 dbSNP
rs531890631 377 dbSNP
rs1196839796 383 dbSNP
rs1366148681 387 dbSNP
rs1165441600 389 dbSNP
rs1189313311 390 dbSNP
rs1235564369 391 dbSNP
rs894171322 392 dbSNP
rs900971011 395 dbSNP
rs757056465 398 dbSNP
rs1463553633 399 dbSNP
rs1168837376 404 dbSNP
rs939892218 412 dbSNP
rs1476194775 413 dbSNP
rs1357842285 418 dbSNP
rs909809217 418 dbSNP
rs1055950564 426 dbSNP
rs1447571137 426 dbSNP
rs1342629640 435 dbSNP
rs1216827637 449 dbSNP
rs1277682029 456 dbSNP
rs1324146515 458 dbSNP
rs753112860 459 dbSNP
rs548393974 462 dbSNP
rs1201955332 474 dbSNP
rs1191877923 484 dbSNP
rs938480807 485 dbSNP
rs1441565030 505 dbSNP
rs928382956 514 dbSNP
rs1216252322 519 dbSNP
rs1452649095 519 dbSNP
rs564479084 522 dbSNP
rs552732214 523 dbSNP
rs1476653696 531 dbSNP
rs59615427 532 dbSNP
rs796810205 532 dbSNP
rs1429435897 537 dbSNP
rs1478634088 542 dbSNP
rs1174894188 544 dbSNP
rs938798914 550 dbSNP
rs1414208859 551 dbSNP
rs1319421981 552 dbSNP
rs34222198 552 dbSNP
rs1362648602 563 dbSNP
rs982263467 567 dbSNP
rs34241059 586 dbSNP
rs940201972 589 dbSNP
rs1260013251 590 dbSNP
rs1297635021 599 dbSNP
rs527905265 607 dbSNP
rs977626923 609 dbSNP
rs1275880944 610 dbSNP
rs1216479976 611 dbSNP
rs984395869 620 dbSNP
rs1337708720 627 dbSNP
rs1269618181 636 dbSNP
rs1487090923 641 dbSNP
rs1268970464 643 dbSNP
rs79292387 643 dbSNP
rs1452770683 654 dbSNP
rs1196150463 658 dbSNP
rs1028360759 659 dbSNP
rs191348370 662 dbSNP
rs186900982 663 dbSNP
rs965451342 666 dbSNP
rs1382606962 668 dbSNP
rs183541318 678 dbSNP
rs1158343751 681 dbSNP
rs1216435746 688 dbSNP
rs998668786 693 dbSNP
rs1366440154 695 dbSNP
rs903055433 700 dbSNP
rs760223470 708 dbSNP
rs1330412428 710 dbSNP
rs1442899273 713 dbSNP
rs1011489970 714 dbSNP
rs1351316697 720 dbSNP
rs894138808 723 dbSNP
rs1027999853 749 dbSNP
rs1358055740 749 dbSNP
rs1411252328 750 dbSNP
rs1416983279 751 dbSNP
rs1451519726 756 dbSNP
rs1179883858 763 dbSNP
rs1240411039 769 dbSNP
rs1055431981 770 dbSNP
rs572174576 770 dbSNP
rs1369226853 773 dbSNP
rs1459674002 781 dbSNP
rs1002955747 783 dbSNP
rs114351563 784 dbSNP
rs1430862196 788 dbSNP
rs1333206802 794 dbSNP
rs1197886623 795 dbSNP
rs1015808246 796 dbSNP
rs1331274787 812 dbSNP
rs1445708941 812 dbSNP
rs1003992967 813 dbSNP
rs1341859947 816 dbSNP
rs879125426 819 dbSNP
rs1242224791 823 dbSNP
rs1264339666 826 dbSNP
rs879200302 827 dbSNP
rs1252915366 829 dbSNP
rs747341634 840 dbSNP
rs1260494097 842 dbSNP
rs1456846320 843 dbSNP
rs1178375848 844 dbSNP
rs1257356091 845 dbSNP
rs757071971 853 dbSNP
rs367775742 856 dbSNP
rs578002833 856 dbSNP
rs879455222 860 dbSNP
rs1368118394 865 dbSNP
rs940152150 866 dbSNP
rs543701782 869 dbSNP
rs576395338 870 dbSNP
rs1048668669 872 dbSNP
rs7938645 874 dbSNP
rs1465076523 876 dbSNP
rs1220091209 878 dbSNP
rs1404163019 886 dbSNP
rs894457773 887 dbSNP
rs1057135668 891 dbSNP
rs1281465728 903 dbSNP
rs938731256 904 dbSNP
rs562399452 906 dbSNP
rs1198634104 912 dbSNP
rs1279883253 913 dbSNP
rs1444065213 915 dbSNP
rs1256949554 916 dbSNP
rs1484402390 928 dbSNP
rs1199105660 932 dbSNP
rs766639365 951 dbSNP
rs192168932 954 dbSNP
rs1421639957 962 dbSNP
rs1477449873 963 dbSNP
rs572184797 965 dbSNP
rs554207009 969 dbSNP
rs1379307597 978 dbSNP
rs1464307909 983 dbSNP
rs947520486 991 dbSNP
rs767186533 998 dbSNP
rs186478342 1004 dbSNP
rs986355391 1005 dbSNP
rs180696376 1006 dbSNP
rs1339361451 1013 dbSNP
rs1028365133 1018 dbSNP
rs1302513873 1019 dbSNP
rs1314486992 1028 dbSNP
rs1231477537 1038 dbSNP
rs763112287 1043 dbSNP
rs1409392856 1048 dbSNP
rs967184055 1053 dbSNP
rs1021449658 1054 dbSNP
rs1488727838 1055 dbSNP
rs1261123209 1056 dbSNP
rs965450528 1063 dbSNP
rs1015340017 1066 dbSNP
rs1269323382 1069 dbSNP
rs778896583 1071 dbSNP
rs1003942026 1078 dbSNP
rs1175058715 1081 dbSNP
rs1380741701 1082 dbSNP
rs1421133998 1083 dbSNP
rs1011374066 1085 dbSNP
rs1026794769 1087 dbSNP
rs1012748184 1098 dbSNP
rs1294806949 1104 dbSNP
rs773944470 1107 dbSNP
rs556127774 1108 dbSNP
rs1303113140 1109 dbSNP
rs1468911421 1119 dbSNP
rs1242778714 1130 dbSNP
rs148076066 1134 dbSNP
rs1316581545 1142 dbSNP
rs1211009750 1150 dbSNP
rs1462839095 1158 dbSNP
rs570785018 1162 dbSNP
rs552629100 1163 dbSNP
rs1238717152 1164 dbSNP
rs117049505 1176 dbSNP
rs566973662 1177 dbSNP
rs1329970977 1180 dbSNP
rs1307587301 1202 dbSNP
rs144686449 1204 dbSNP
rs1166267166 1213 dbSNP
rs1347669377 1216 dbSNP
rs1456837867 1223 dbSNP
rs1325747135 1225 dbSNP
rs558424957 1230 dbSNP
rs561806816 1235 dbSNP
rs1307579375 1240 dbSNP
rs887533700 1247 dbSNP
rs1452837887 1248 dbSNP
rs1229158014 1251 dbSNP
rs1048553744 1252 dbSNP
rs1334070133 1269 dbSNP
rs1319932999 1286 dbSNP
rs931485457 1288 dbSNP
rs921495637 1292 dbSNP
rs1258575195 1301 dbSNP
rs1468814616 1316 dbSNP
rs1345330788 1318 dbSNP
rs1161910352 1322 dbSNP
rs1237396574 1326 dbSNP
rs1295355474 1333 dbSNP
rs1183306651 1345 dbSNP
rs777059750 1350 dbSNP
rs1399471236 1354 dbSNP
rs200073800 1355 dbSNP
rs944032543 1356 dbSNP
rs1467685553 1359 dbSNP
rs1329706829 1362 dbSNP
rs1446631029 1362 dbSNP
rs1449215113 1366 dbSNP
rs1286115986 1368 dbSNP
rs1050584028 1369 dbSNP
rs566783006 1370 dbSNP
rs977470271 1374 dbSNP
rs967403199 1384 dbSNP
rs1216784487 1392 dbSNP
rs1241499185 1393 dbSNP
rs1272018906 1394 dbSNP
rs1442720643 1396 dbSNP
rs1211996630 1400 dbSNP
rs914662673 1402 dbSNP
rs989919430 1417 dbSNP
rs1193724862 1423 dbSNP
rs531363116 1427 dbSNP
rs3802964 1428 dbSNP
rs958799708 1431 dbSNP
rs1034257596 1435 dbSNP
rs1169076223 1437 dbSNP
rs1183270692 1441 dbSNP
rs1415353235 1447 dbSNP
rs1003241173 1452 dbSNP
rs1336589848 1466 dbSNP
rs1357609670 1489 dbSNP
rs908232805 1501 dbSNP
rs1298872518 1502 dbSNP
rs971078219 1526 dbSNP
rs564393666 1533 dbSNP
rs1269468523 1538 dbSNP
rs1262632286 1542 dbSNP
rs1220703211 1550 dbSNP
rs1217769928 1551 dbSNP
rs1014969207 1572 dbSNP
rs1346682416 1573 dbSNP
rs1004552718 1583 dbSNP
rs1216969572 1598 dbSNP
rs1283236876 1599 dbSNP
rs748331294 1601 dbSNP
rs952467300 1605 dbSNP
rs1246478160 1612 dbSNP
rs1026742042 1626 dbSNP
rs1478665247 1628 dbSNP
rs1012696388 1630 dbSNP
rs1423583088 1637 dbSNP
rs1361376594 1638 dbSNP
rs539892520 1641 dbSNP
rs1159407547 1643 dbSNP
rs1362707924 1645 dbSNP
rs769169634 1649 dbSNP
rs1317766006 1653 dbSNP
rs1331581749 1668 dbSNP
rs1438593141 1679 dbSNP
rs1272848426 1687 dbSNP
rs1027417771 1692 dbSNP
rs1003232955 1696 dbSNP
rs1240615290 1696 dbSNP
rs903157208 1702 dbSNP
rs1204003874 1707 dbSNP
rs1290134377 1725 dbSNP
rs1429182445 1745 dbSNP
rs1452680416 1755 dbSNP
rs1345155954 1756 dbSNP
rs375206894 1761 dbSNP
rs995658770 1766 dbSNP
rs1164822445 1787 dbSNP
rs1041761334 1799 dbSNP
rs900020817 1802 dbSNP
rs1454065779 1805 dbSNP
rs1383834785 1807 dbSNP
rs1039956020 1810 dbSNP
rs1163167027 1823 dbSNP
rs944324666 1834 dbSNP
rs1050532180 1840 dbSNP
rs1391623170 1840 dbSNP
rs932165505 1846 dbSNP
rs923455972 1854 dbSNP
rs1393666753 1865 dbSNP
rs747559400 1867 dbSNP
rs1263870921 1876 dbSNP
rs940952592 1877 dbSNP
rs1374171954 1879 dbSNP
rs1041663083 1882 dbSNP
rs1384732248 1885 dbSNP
rs1289925077 1886 dbSNP
rs1284271770 1893 dbSNP
rs1184877483 1912 dbSNP
rs1484829923 1924 dbSNP
rs908162661 1931 dbSNP
rs1223211723 1935 dbSNP
rs946070845 1941 dbSNP
rs914631506 1954 dbSNP
rs1289331419 1960 dbSNP
rs1417549036 1973 dbSNP
rs1181270826 1976 dbSNP
rs1243541144 1987 dbSNP
rs189846526 1995 dbSNP
rs1162914876 2003 dbSNP
rs1297048854 2004 dbSNP
rs952415883 2005 dbSNP
rs990222653 2012 dbSNP
rs1212269028 2014 dbSNP
rs937172460 2020 dbSNP
rs927152776 2022 dbSNP
rs1390610653 2025 dbSNP
rs1360727589 2033 dbSNP
rs1304262829 2036 dbSNP
rs991224195 2036 dbSNP
rs1241939528 2038 dbSNP
rs1407366117 2051 dbSNP
rs958554634 2053 dbSNP
rs1334746429 2057 dbSNP
rs981305886 2060 dbSNP
rs572180340 2064 dbSNP
rs971680587 2070 dbSNP
rs1014867911 2077 dbSNP
rs780073985 2083 dbSNP
rs1035948278 2085 dbSNP
rs1375032336 2091 dbSNP
rs1257070901 2097 dbSNP
rs1002772620 2103 dbSNP
rs7934205 2104 dbSNP
rs1417317754 2108 dbSNP
rs951719008 2110 dbSNP
rs746088626 2113 dbSNP
rs1172649597 2115 dbSNP
rs1371280725 2115 dbSNP
rs1430156622 2115 dbSNP
rs1461254208 2116 dbSNP
rs1172978192 2117 dbSNP
rs1403868022 2118 dbSNP
rs768597280 2118 dbSNP
rs1020260795 2119 dbSNP
rs1412598542 2119 dbSNP
rs1199976917 2122 dbSNP
rs1340672676 2122 dbSNP
rs745814549 2125 dbSNP
rs1490824676 2137 dbSNP
rs1266450808 2138 dbSNP
rs1209057166 2139 dbSNP
rs1280593002 2152 dbSNP
rs1306297119 2153 dbSNP
rs1480861641 2153 dbSNP
rs71050615 2153 dbSNP
rs1257002570 2154 dbSNP
rs1347381940 2154 dbSNP
rs1252683242 2159 dbSNP
rs1257083971 2159 dbSNP
rs1488625425 2160 dbSNP
rs1011574759 2164 dbSNP
rs1259526465 2169 dbSNP
rs779014859 2169 dbSNP
rs1427892257 2170 dbSNP
rs55846991 2174 dbSNP
rs1027385224 2175 dbSNP
rs781142945 2179 dbSNP
rs995964019 2181 dbSNP
rs899993023 2184 dbSNP
rs1172562961 2189 dbSNP
rs577115827 2196 dbSNP
rs1283367625 2199 dbSNP
rs1420940636 2207 dbSNP
rs1018826751 2208 dbSNP
rs996692335 2220 dbSNP
rs1225824859 2230 dbSNP
rs1360463753 2231 dbSNP
rs1302407618 2232 dbSNP
rs1373560487 2232 dbSNP
rs541661888 2238 dbSNP
rs3168304 2242 dbSNP
rs1344196240 2246 dbSNP
rs1279821640 2250 dbSNP
rs1008400470 2259 dbSNP
rs1218849145 2260 dbSNP
rs891349707 2264 dbSNP
rs1040960976 2271 dbSNP
rs1191769307 2279 dbSNP
rs1296664646 2292 dbSNP
rs1461676748 2300 dbSNP
rs1452282416 2301 dbSNP
rs1192804402 2316 dbSNP
rs1406849788 2323 dbSNP
rs1380494827 2324 dbSNP
rs574586876 2329 dbSNP
rs946038281 2330 dbSNP
rs1344159428 2335 dbSNP
rs367675852 2352 dbSNP
rs893162831 2354 dbSNP
rs1427080091 2359 dbSNP
rs878868354 2374 dbSNP
rs1198142231 2382 dbSNP
rs1303184715 2390 dbSNP
rs1054461972 2391 dbSNP
rs1049340552 2397 dbSNP
rs1304958789 2398 dbSNP
rs937388761 2402 dbSNP
rs554160721 2411 dbSNP
rs930963400 2415 dbSNP
rs981658359 2417 dbSNP
rs1212812558 2422 dbSNP
rs1457050490 2426 dbSNP
rs537830148 2431 dbSNP
rs949926899 2434 dbSNP
rs1441150700 2438 dbSNP
rs907778573 2446 dbSNP
rs1175049131 2449 dbSNP
rs139815241 2457 dbSNP
rs1423840989 2458 dbSNP
rs1166332527 2460 dbSNP
rs983388850 2467 dbSNP
rs1460384250 2468 dbSNP
rs568402647 2471 dbSNP
rs1320850273 2472 dbSNP
rs1255900845 2473 dbSNP
rs928451023 2473 dbSNP
rs570527024 2491 dbSNP
rs1296613229 2494 dbSNP
rs1372907396 2502 dbSNP
rs1228927921 2513 dbSNP
rs753716004 2514 dbSNP
rs1332570127 2515 dbSNP
rs1232669611 2547 dbSNP
rs1027359790 2552 dbSNP
rs1240459216 2556 dbSNP
rs532075056 2559 dbSNP
rs964778051 2566 dbSNP
rs1439280109 2567 dbSNP
rs1337835303 2568 dbSNP
rs981687965 2573 dbSNP
rs1018717040 2584 dbSNP
rs1446261971 2585 dbSNP
rs1183075479 2588 dbSNP
rs1254854574 2590 dbSNP
rs1474512101 2591 dbSNP
rs1164756494 2592 dbSNP
rs1424992420 2596 dbSNP
rs967269506 2599 dbSNP
rs559176287 2602 dbSNP
rs1354133048 2606 dbSNP
rs990088552 2614 dbSNP
rs955567694 2616 dbSNP
rs1314831020 2620 dbSNP
rs372769088 2632 dbSNP
rs1468283315 2634 dbSNP
rs534227431 2638 dbSNP
rs567013045 2642 dbSNP
rs1010484403 2643 dbSNP
rs548488164 2650 dbSNP
rs1341425026 2651 dbSNP
rs957343916 2659 dbSNP
rs1029010293 2660 dbSNP
rs1312399166 2661 dbSNP
rs1418040389 2662 dbSNP
rs1212663600 2665 dbSNP
rs893396876 2671 dbSNP
rs996251599 2675 dbSNP
rs10832948 2678 dbSNP
rs149369391 2679 dbSNP
rs1243164375 2680 dbSNP
rs1476700289 2681 dbSNP
rs1185125659 2687 dbSNP
rs1419330939 2691 dbSNP
rs1415406571 2695 dbSNP
rs1175697765 2697 dbSNP
rs1179420765 2702 dbSNP
rs537775543 2703 dbSNP
rs531300161 2716 dbSNP
rs886633498 2730 dbSNP
rs1428622545 2732 dbSNP
rs1049289788 2735 dbSNP
rs1236243155 2737 dbSNP
rs1185104212 2738 dbSNP
rs1346746993 2746 dbSNP
rs563950165 2747 dbSNP
rs546032838 2752 dbSNP
rs949903110 2755 dbSNP
rs1214188032 2762 dbSNP
rs1242057634 2763 dbSNP
rs930911128 2765 dbSNP
rs1353500562 2769 dbSNP
rs527579951 2771 dbSNP
rs185488561 2778 dbSNP
rs1159317578 2779 dbSNP
rs1387142848 2780 dbSNP
rs1055868641 2786 dbSNP
rs1317621335 2796 dbSNP
rs1400557225 2806 dbSNP
rs1350371639 2810 dbSNP
rs1442877908 2811 dbSNP
rs1300927340 2812 dbSNP
rs937074793 2819 dbSNP
rs928368241 2830 dbSNP
rs370086764 2834 dbSNP
rs375149266 2836 dbSNP
rs1047669387 2839 dbSNP
rs7951729 2840 dbSNP
rs1284228081 2844 dbSNP
rs1469272256 2845 dbSNP
rs554189500 2846 dbSNP
rs542476190 2860 dbSNP
rs1450818861 2867 dbSNP
rs913099947 2868 dbSNP
rs974792965 2870 dbSNP
rs1365740211 2872 dbSNP
rs964423597 2874 dbSNP
rs911618693 2875 dbSNP
rs181247125 2878 dbSNP
rs975141444 2881 dbSNP
rs987261956 2897 dbSNP
rs562608739 2898 dbSNP
rs1333591881 2902 dbSNP
rs1004995731 2905 dbSNP
rs1284224413 2906 dbSNP
rs1235608181 2907 dbSNP
rs1336125562 2907 dbSNP
rs1271820408 2908 dbSNP
rs886579454 2914 dbSNP
rs1020374941 2915 dbSNP
rs1252972080 2922 dbSNP
rs1010363318 2925 dbSNP
rs1385696812 2930 dbSNP
rs1181201642 2941 dbSNP
rs1027795434 2945 dbSNP
rs1476227209 2947 dbSNP
rs1165080589 2951 dbSNP
rs957593753 2952 dbSNP
rs1442411882 2962 dbSNP
rs767051711 2969 dbSNP
rs867781008 2970 dbSNP
rs1169391142 2971 dbSNP
rs1393907486 2979 dbSNP
rs1390401898 2980 dbSNP
rs1312961150 2982 dbSNP
rs1033278517 2987 dbSNP
rs116998730 2988 dbSNP
rs17579600 2990 dbSNP
rs1228647172 2993 dbSNP
rs566241111 2993 dbSNP
rs906893029 2993 dbSNP
rs1195515610 2995 dbSNP
rs547924499 2996 dbSNP
rs1014373129 2999 dbSNP
rs1486723781 3000 dbSNP
rs1260237063 3005 dbSNP
rs886533006 3008 dbSNP
rs1256758955 3009 dbSNP
rs1490615646 3014 dbSNP
rs1294403484 3021 dbSNP
rs1243974709 3029 dbSNP
rs1195076608 3031 dbSNP
rs189716076 3033 dbSNP
rs753444414 3041 dbSNP
rs1047559318 3045 dbSNP
rs1355937266 3047 dbSNP
rs1270802269 3050 dbSNP
rs866952596 3060 dbSNP
rs1371060478 3063 dbSNP
rs1229661780 3065 dbSNP
rs930482518 3066 dbSNP
rs920483989 3083 dbSNP
rs369884085 3090 dbSNP
rs534240282 3092 dbSNP
rs1432368316 3093 dbSNP
rs769834684 3096 dbSNP
rs747172946 3106 dbSNP
rs1474048165 3107 dbSNP
rs987619672 3109 dbSNP
rs1383206963 3111 dbSNP
rs201551922 3118 dbSNP
rs1325114762 3126 dbSNP
rs573455636 3138 dbSNP
rs562373133 3139 dbSNP
rs555330687 3140 dbSNP
rs781740814 3141 dbSNP
rs1347353767 3142 dbSNP
rs1350275085 3145 dbSNP
rs1208847314 3148 dbSNP
rs988908631 3148 dbSNP
rs957562722 3156 dbSNP
rs1317018004 3158 dbSNP
rs1435860775 3165 dbSNP
rs1206894421 3169 dbSNP
rs772124386 3176 dbSNP
rs1320584202 3178 dbSNP
rs536826735 3179 dbSNP
rs569491974 3182 dbSNP
rs544078702 3190 dbSNP
rs966426291 3191 dbSNP
rs779061503 3193 dbSNP
rs1430628480 3195 dbSNP
rs1381250520 3197 dbSNP
rs1191110906 3198 dbSNP
rs1477447921 3201 dbSNP
rs1244441067 3202 dbSNP
rs1293763322 3203 dbSNP
rs911908650 3213 dbSNP
rs1172485541 3219 dbSNP
rs1413958278 3223 dbSNP
rs1345341154 3224 dbSNP
rs1217558277 3227 dbSNP
rs1291198821 3232 dbSNP
rs1465084278 3232 dbSNP
rs983475181 3237 dbSNP
rs980418671 3238 dbSNP
rs1206591766 3239 dbSNP
rs970453559 3240 dbSNP
rs1027742676 3242 dbSNP
rs1024273448 3251 dbSNP
rs1232279455 3257 dbSNP
rs1300841658 3263 dbSNP
rs1317652473 3264 dbSNP
rs994961089 3267 dbSNP
rs531928152 3268 dbSNP
rs1258930203 3276 dbSNP
rs1485478969 3278 dbSNP
rs959573066 3279 dbSNP
rs564644502 3283 dbSNP
rs1034330560 3287 dbSNP
rs879717257 3299 dbSNP
rs1003828935 3300 dbSNP
rs549876009 3302 dbSNP
rs1408239766 3307 dbSNP
rs762129810 3310 dbSNP
rs537945422 3319 dbSNP
rs1420398569 3322 dbSNP
rs1156264670 3323 dbSNP
rs886501928 3325 dbSNP
rs1277650336 3332 dbSNP
rs1457123404 3332 dbSNP
rs1217886097 3337 dbSNP
rs1026415444 3347 dbSNP
rs1346106742 3351 dbSNP
rs75548670 3351 dbSNP
rs1045420909 3361 dbSNP
rs1374287548 3363 dbSNP
rs1393245125 3365 dbSNP
rs1285161287 3374 dbSNP
rs570387597 3393 dbSNP
rs899022295 3395 dbSNP
rs1328406403 3398 dbSNP
rs1349148282 3401 dbSNP
rs891559542 3403 dbSNP
rs1274965660 3411 dbSNP
rs1054245778 3420 dbSNP
rs1212809668 3427 dbSNP
rs935801756 3428 dbSNP
rs1481383904 3433 dbSNP
rs1174988193 3447 dbSNP
rs1249130655 3455 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000336349.5 | 3UTR | UCAAGUUAAAAUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000336349.5 | 3UTR | UCAAGUUAAAAUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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