pre-miRNA Information
pre-miRNA hsa-mir-3915   
Genomic Coordinates chrX: 32583656 - 32583752
Description Homo sapiens miR-3915 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3915
Sequence 21| UUGAGGAAAAGAUGGUCUUAUU |42
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs997323565 10 dbSNP
rs1192161547 15 dbSNP
rs1255075246 19 dbSNP
rs1452812574 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RRP8   
Synonyms KIAA0409, NML
Description ribosomal RNA processing 8
Transcript NM_015324   
Expression
Putative miRNA Targets on RRP8
3'UTR of RRP8
(miRNA target sites are highlighted)
>RRP8|NM_015324|3'UTR
   1 CCTCTGGATCTTCCTTGAAAGGGGAGGCAGATCTCAAACTCCAGGCTCAGAACTGTGAAGACTGTTTCCAGCCTGGCTGT
  81 GAGCCAAGACCTGGTTCCTGGTGGACCCTGAGGACAAAGTGTGATAAAACCTCTGGCTCAGACTTGCTCTACTGAAGGCT
 161 TCTTGGTTATAAGATGCATAAAGTCACTGGGGCTAGCTAAACAATAAAGAGTTTATTGTGAGAACATGGGGAAAAAAAAA
 241 AAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuaUUCUGGUAGAAAAGGAguu 5'
             ||||||  :  |||||   
Target 5' gccAAGACC--TGGTTCCTggt 3'
83 - 102 115.00 -12.40
2
miRNA  3' uuauucuggUAGAAAAGGAGUu 5'
                   |||  |||||:: 
Target 5' --cctctggATC--TTCCTTGa 3'
1 - 18 113.00 -6.10
3
miRNA  3' uuaUUCUGGUAGAAAAGGaguu 5'
             |||||::   |||||    
Target 5' gtgAAGACTG---TTTCCagcc 3'
55 - 73 100.00 -7.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30148484 30 COSMIC
COSN30489715 41 COSMIC
COSN30144740 42 COSMIC
COSN30102232 50 COSMIC
COSN30177622 72 COSMIC
COSN31580689 88 COSMIC
COSN31493123 123 COSMIC
COSN14986886 758 COSMIC
COSN8282807 1161 COSMIC
COSN5708838 1167 COSMIC
COSN22876365 1493 COSMIC
COSN22025187 1507 COSMIC
COSN22508286 1508 COSMIC
COSN23715480 1604 COSMIC
COSN17602623 1724 COSMIC
COSN5916901 2596 COSMIC
COSN26651742 3122 COSMIC
COSN8536428 3332 COSMIC
COSN17086726 4408 COSMIC
COSN29532835 4526 COSMIC
COSN8688150 4537 COSMIC
COSN29579142 4600 COSMIC
COSN21786922 4799 COSMIC
COSN24376219 4839 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759911995 1 dbSNP
rs113031280 2 dbSNP
rs1234154726 4 dbSNP
rs61875867 7 dbSNP
rs1221452492 8 dbSNP
rs1367683997 10 dbSNP
rs1273770059 15 dbSNP
rs567824000 16 dbSNP
rs1332416142 17 dbSNP
rs578158446 20 dbSNP
rs377599645 25 dbSNP
rs766860706 25 dbSNP
rs375591109 29 dbSNP
rs770006477 31 dbSNP
rs1178123957 41 dbSNP
rs748060907 43 dbSNP
rs1373856856 48 dbSNP
rs941453079 51 dbSNP
rs557923026 68 dbSNP
rs985936718 72 dbSNP
rs1474305281 73 dbSNP
rs1239212610 82 dbSNP
rs142005245 101 dbSNP
rs1211102491 106 dbSNP
rs1420396278 108 dbSNP
rs968391368 109 dbSNP
rs909948535 119 dbSNP
rs375381036 124 dbSNP
rs1415554266 130 dbSNP
rs1200955612 131 dbSNP
rs1055235938 132 dbSNP
rs938213983 134 dbSNP
rs1232506021 137 dbSNP
rs2890 151 dbSNP
rs1318612237 156 dbSNP
rs1236821697 166 dbSNP
rs1293290465 169 dbSNP
rs1485717482 175 dbSNP
rs988244486 178 dbSNP
rs1231928500 182 dbSNP
rs1461162938 188 dbSNP
rs535856781 197 dbSNP
rs576675844 202 dbSNP
rs1251714358 204 dbSNP
rs1421335141 207 dbSNP
rs1284227039 208 dbSNP
rs773805827 209 dbSNP
rs1435478389 214 dbSNP
rs1441069370 215 dbSNP
rs1373915202 227 dbSNP
rs913559893 246 dbSNP
rs1332929079 255 dbSNP
rs1034608473 259 dbSNP
rs1375275976 261 dbSNP
rs1393453306 270 dbSNP
rs566736833 271 dbSNP
rs1308534405 276 dbSNP
rs1347961745 279 dbSNP
rs1235901294 284 dbSNP
rs1277607646 285 dbSNP
rs989136190 290 dbSNP
rs1204790551 292 dbSNP
rs1233739074 292 dbSNP
rs957786061 297 dbSNP
rs1175975400 306 dbSNP
rs1017393433 315 dbSNP
rs1238152690 317 dbSNP
rs1003254434 324 dbSNP
rs1195535707 329 dbSNP
rs1007297807 333 dbSNP
rs1414065987 335 dbSNP
rs1406960278 338 dbSNP
rs1023113743 344 dbSNP
rs767477350 348 dbSNP
rs566655667 353 dbSNP
rs1231439480 355 dbSNP
rs533072632 357 dbSNP
rs1214791488 363 dbSNP
rs774677615 364 dbSNP
rs769007487 365 dbSNP
rs897703779 366 dbSNP
rs148206994 367 dbSNP
rs117803860 372 dbSNP
rs1323990017 384 dbSNP
rs1469266403 387 dbSNP
rs888436739 388 dbSNP
rs1216114292 390 dbSNP
rs994119432 391 dbSNP
rs530675277 395 dbSNP
rs769697434 396 dbSNP
rs561784659 397 dbSNP
rs1421961851 400 dbSNP
rs1055163238 401 dbSNP
rs938087579 404 dbSNP
rs539463168 419 dbSNP
rs1394953601 431 dbSNP
rs1462899094 433 dbSNP
rs928127966 434 dbSNP
rs1323877113 437 dbSNP
rs1348791159 457 dbSNP
rs1430878147 463 dbSNP
rs1271549459 469 dbSNP
rs910619846 473 dbSNP
rs1217670421 481 dbSNP
rs1311083511 492 dbSNP
rs143004060 500 dbSNP
rs111762617 508 dbSNP
rs1050277730 514 dbSNP
rs1216080078 521 dbSNP
rs1288427204 521 dbSNP
rs541548346 536 dbSNP
rs1323588322 549 dbSNP
rs369639361 552 dbSNP
rs945636653 555 dbSNP
rs914128233 560 dbSNP
rs76653057 561 dbSNP
rs1400249880 562 dbSNP
rs370900743 563 dbSNP
rs1160698952 565 dbSNP
rs988078847 571 dbSNP
rs1418292610 573 dbSNP
rs956798542 577 dbSNP
rs927645923 582 dbSNP
rs745763444 583 dbSNP
rs1401240118 592 dbSNP
rs993992437 593 dbSNP
rs981719279 597 dbSNP
rs989717470 600 dbSNP
rs1398942127 602 dbSNP
rs1313173119 603 dbSNP
rs781210831 617 dbSNP
rs7928852 620 dbSNP
rs1235571276 621 dbSNP
rs1282917591 625 dbSNP
rs1035484907 627 dbSNP
rs910216912 643 dbSNP
rs1192199754 644 dbSNP
rs185696179 654 dbSNP
rs1351677468 657 dbSNP
rs1489658450 660 dbSNP
rs1013542056 663 dbSNP
rs1215697292 671 dbSNP
rs954453298 685 dbSNP
rs1030583401 688 dbSNP
rs1287465590 691 dbSNP
rs759009434 694 dbSNP
rs971900895 700 dbSNP
rs1470433092 707 dbSNP
rs1240448116 708 dbSNP
rs192170289 720 dbSNP
rs1418632975 723 dbSNP
rs1173837957 724 dbSNP
rs962284507 739 dbSNP
rs993780007 766 dbSNP
rs1376947551 768 dbSNP
rs1412558301 770 dbSNP
rs1388343574 771 dbSNP
rs1016212516 777 dbSNP
rs1040420374 778 dbSNP
rs1443549539 784 dbSNP
rs1368021339 788 dbSNP
rs746532560 792 dbSNP
rs1281850008 793 dbSNP
rs1001695414 801 dbSNP
rs1351562201 804 dbSNP
rs1008887666 813 dbSNP
rs1281158029 819 dbSNP
rs777346055 820 dbSNP
rs1428489103 821 dbSNP
rs888479250 824 dbSNP
rs1438239924 832 dbSNP
rs1183894637 834 dbSNP
rs758029872 839 dbSNP
rs1438514099 840 dbSNP
rs1420352851 841 dbSNP
rs1193656210 845 dbSNP
rs1002244822 846 dbSNP
rs906592815 849 dbSNP
rs578195555 853 dbSNP
rs78598626 857 dbSNP
rs115900668 861 dbSNP
rs575398683 864 dbSNP
rs892610205 867 dbSNP
rs117076804 870 dbSNP
rs1401943910 872 dbSNP
rs1410919979 874 dbSNP
rs936899656 879 dbSNP
rs1052668607 889 dbSNP
rs910228208 891 dbSNP
rs1375266832 905 dbSNP
rs935279925 909 dbSNP
rs186798803 920 dbSNP
rs1373302825 929 dbSNP
rs756553663 933 dbSNP
rs566903085 936 dbSNP
rs1339791367 937 dbSNP
rs1197384420 953 dbSNP
rs981776932 961 dbSNP
rs969024197 967 dbSNP
rs1254323424 973 dbSNP
rs1431021853 976 dbSNP
rs1197688316 979 dbSNP
rs916208676 981 dbSNP
rs1451577107 1004 dbSNP
rs983898063 1008 dbSNP
rs1398564494 1012 dbSNP
rs1465509818 1039 dbSNP
rs1277815513 1041 dbSNP
rs952542630 1048 dbSNP
rs1396781859 1065 dbSNP
rs1385198149 1067 dbSNP
rs933085927 1069 dbSNP
rs923018878 1070 dbSNP
rs140917401 1072 dbSNP
rs1229923264 1075 dbSNP
rs1312574356 1082 dbSNP
rs1276010350 1086 dbSNP
rs768102973 1092 dbSNP
rs1275021612 1095 dbSNP
rs1212769319 1101 dbSNP
rs1406552414 1105 dbSNP
rs961930341 1107 dbSNP
rs1342336247 1114 dbSNP
rs1298710018 1117 dbSNP
rs1400753610 1118 dbSNP
rs1374920892 1123 dbSNP
rs539777639 1124 dbSNP
rs1421918733 1127 dbSNP
rs962316078 1130 dbSNP
rs137917111 1133 dbSNP
rs958574558 1136 dbSNP
rs145474249 1137 dbSNP
rs1360132132 1138 dbSNP
rs200544363 1139 dbSNP
rs140354511 1140 dbSNP
rs1292969398 1149 dbSNP
rs1002130273 1150 dbSNP
rs1170137780 1155 dbSNP
rs145556259 1160 dbSNP
rs150177498 1167 dbSNP
rs1426468617 1168 dbSNP
rs1195016300 1169 dbSNP
rs1319815447 1171 dbSNP
rs1243982362 1178 dbSNP
rs1260744867 1195 dbSNP
rs528166619 1198 dbSNP
rs1029374170 1199 dbSNP
rs1025080778 1211 dbSNP
rs1262069084 1212 dbSNP
rs190074980 1214 dbSNP
rs892669497 1215 dbSNP
rs1053924654 1219 dbSNP
rs1201849078 1221 dbSNP
rs936910972 1222 dbSNP
rs1422511099 1235 dbSNP
rs1336090392 1237 dbSNP
rs559359602 1238 dbSNP
rs73395103 1241 dbSNP
rs1050102677 1245 dbSNP
rs1360081431 1246 dbSNP
rs935159158 1247 dbSNP
rs774587647 1251 dbSNP
rs922913204 1256 dbSNP
rs764329639 1258 dbSNP
rs1307699634 1261 dbSNP
rs140881262 1273 dbSNP
rs1237385923 1275 dbSNP
rs763263801 1284 dbSNP
rs775896163 1287 dbSNP
rs1232536291 1304 dbSNP
rs1212580870 1314 dbSNP
rs74053429 1321 dbSNP
rs1482521627 1326 dbSNP
rs1310600405 1331 dbSNP
rs1251934642 1335 dbSNP
rs958634793 1341 dbSNP
rs1398038163 1342 dbSNP
rs927237603 1344 dbSNP
rs1379772888 1345 dbSNP
rs142751814 1355 dbSNP
rs182517961 1359 dbSNP
rs1464441187 1362 dbSNP
rs562138702 1372 dbSNP
rs918320321 1373 dbSNP
rs1025393712 1378 dbSNP
rs111464582 1388 dbSNP
rs1307807333 1391 dbSNP
rs573264272 1397 dbSNP
rs571633149 1399 dbSNP
rs987730145 1400 dbSNP
rs956741494 1408 dbSNP
rs1310786984 1412 dbSNP
rs1209799443 1415 dbSNP
rs1252290630 1417 dbSNP
rs1459430861 1428 dbSNP
rs1197317249 1429 dbSNP
rs191802817 1432 dbSNP
rs1237626558 1446 dbSNP
rs1032524561 1449 dbSNP
rs539468380 1454 dbSNP
rs577273546 1458 dbSNP
rs1193103891 1469 dbSNP
rs1423382766 1470 dbSNP
rs551492560 1471 dbSNP
rs557322853 1475 dbSNP
rs537340701 1477 dbSNP
rs1458931632 1478 dbSNP
rs568304665 1480 dbSNP
rs776363472 1487 dbSNP
rs1213013375 1489 dbSNP
rs770912718 1490 dbSNP
rs998165950 1492 dbSNP
rs1463942811 1494 dbSNP
rs893926251 1495 dbSNP
rs147911228 1497 dbSNP
rs999526604 1501 dbSNP
rs1267110236 1517 dbSNP
rs1247140476 1519 dbSNP
rs906384511 1526 dbSNP
rs1320518539 1528 dbSNP
rs1217333329 1534 dbSNP
rs1036406414 1535 dbSNP
rs940466279 1537 dbSNP
rs747003084 1542 dbSNP
rs11600032 1543 dbSNP
rs1245087070 1544 dbSNP
rs1048090693 1551 dbSNP
rs937205762 1563 dbSNP
rs1425486386 1564 dbSNP
rs930963930 1567 dbSNP
rs144705492 1568 dbSNP
rs943732164 1585 dbSNP
rs912076999 1595 dbSNP
rs1458028388 1597 dbSNP
rs987613979 1601 dbSNP
rs953633003 1602 dbSNP
rs1342734709 1604 dbSNP
rs1398590637 1608 dbSNP
rs1277989157 1610 dbSNP
rs1357622568 1611 dbSNP
rs1362647615 1611 dbSNP
rs183305519 1613 dbSNP
rs1156474078 1617 dbSNP
rs971682091 1620 dbSNP
rs1238592190 1621 dbSNP
rs191976034 1622 dbSNP
rs1217613787 1624 dbSNP
rs562921267 1630 dbSNP
rs1192818362 1633 dbSNP
rs1192622187 1641 dbSNP
rs187000159 1644 dbSNP
rs1449632469 1648 dbSNP
rs917931611 1657 dbSNP
rs771606492 1663 dbSNP
rs1269442289 1671 dbSNP
rs988517234 1674 dbSNP
rs989536298 1682 dbSNP
rs772368128 1684 dbSNP
rs1412441517 1686 dbSNP
rs1210351499 1690 dbSNP
rs1160061594 1704 dbSNP
rs1358178471 1707 dbSNP
rs748376371 1709 dbSNP
rs531100498 1710 dbSNP
rs1238289870 1711 dbSNP
rs184099163 1714 dbSNP
rs1032449500 1717 dbSNP
rs970764528 1726 dbSNP
rs1378488434 1729 dbSNP
rs1024791119 1735 dbSNP
rs1012023508 1745 dbSNP
rs1351702995 1747 dbSNP
rs747773351 1754 dbSNP
rs953558878 1761 dbSNP
rs1233057211 1768 dbSNP
rs778653692 1770 dbSNP
rs542058802 1771 dbSNP
rs1048784619 1776 dbSNP
rs1387797166 1779 dbSNP
rs997788744 1781 dbSNP
rs1179926082 1795 dbSNP
rs1377951616 1804 dbSNP
rs1295767264 1805 dbSNP
rs779041358 1806 dbSNP
rs1403349216 1811 dbSNP
rs756398547 1812 dbSNP
rs1036048682 1818 dbSNP
rs1359056498 1822 dbSNP
rs896820023 1835 dbSNP
rs34298598 1838 dbSNP
rs1311486454 1843 dbSNP
rs189824271 1847 dbSNP
rs750807270 1857 dbSNP
rs1239690950 1866 dbSNP
rs3741270 1871 dbSNP
rs1275709127 1881 dbSNP
rs370150055 1889 dbSNP
rs563431640 1893 dbSNP
rs1198464131 1894 dbSNP
rs887432628 1904 dbSNP
rs1172607542 1919 dbSNP
rs912295713 1920 dbSNP
rs1456980475 1932 dbSNP
rs1048831872 1936 dbSNP
rs1379055498 1949 dbSNP
rs1476856698 1958 dbSNP
rs937089791 1966 dbSNP
rs927132549 1972 dbSNP
rs1051962182 1982 dbSNP
rs1334028835 1987 dbSNP
rs1398167597 1989 dbSNP
rs559605796 1990 dbSNP
rs1379083039 1992 dbSNP
rs1333008335 1993 dbSNP
rs1231342675 1997 dbSNP
rs950009865 2004 dbSNP
rs1446318130 2013 dbSNP
rs71490202 2018 dbSNP
rs1256121272 2019 dbSNP
rs990147619 2036 dbSNP
rs1227621794 2037 dbSNP
rs1449462466 2053 dbSNP
rs12269785 2063 dbSNP
rs752180493 2068 dbSNP
rs1489306856 2069 dbSNP
rs925265034 2079 dbSNP
rs557385950 2086 dbSNP
rs560775004 2090 dbSNP
rs979549062 2092 dbSNP
rs953400854 2093 dbSNP
rs1461947623 2112 dbSNP
rs923963496 2114 dbSNP
rs1029177933 2116 dbSNP
rs1392984069 2123 dbSNP
rs1385293712 2140 dbSNP
rs1323213986 2142 dbSNP
rs976635510 2146 dbSNP
rs966221888 2147 dbSNP
rs778890754 2151 dbSNP
rs1340859663 2154 dbSNP
rs1401664083 2155 dbSNP
rs1182612262 2158 dbSNP
rs978047418 2170 dbSNP
rs1234641977 2172 dbSNP
rs1317156103 2183 dbSNP
rs1245449097 2191 dbSNP
rs531291057 2194 dbSNP
rs1276832739 2197 dbSNP
rs1208841311 2200 dbSNP
rs1401369719 2205 dbSNP
rs1286349159 2208 dbSNP
rs577122214 2225 dbSNP
rs1012072573 2226 dbSNP
rs11608219 2226 dbSNP
rs1026783802 2234 dbSNP
rs1311896842 2250 dbSNP
rs1412341763 2254 dbSNP
rs1163144952 2257 dbSNP
rs1188921253 2257 dbSNP
rs1338168798 2257 dbSNP
rs1361354676 2257 dbSNP
rs1370261361 2257 dbSNP
rs1444317655 2257 dbSNP
rs376667586 2257 dbSNP
rs557337063 2257 dbSNP
rs574735454 2257 dbSNP
rs879085766 2257 dbSNP
rs558916684 2266 dbSNP
rs76079148 2269 dbSNP
rs1286149428 2272 dbSNP
rs1355320477 2273 dbSNP
rs1214018474 2275 dbSNP
rs1284305694 2280 dbSNP
rs1485784181 2281 dbSNP
rs995840952 2282 dbSNP
rs1005085251 2293 dbSNP
rs1422602059 2294 dbSNP
rs887483616 2295 dbSNP
rs1027238296 2298 dbSNP
rs1001247153 2299 dbSNP
rs905581060 2300 dbSNP
rs1344354333 2304 dbSNP
rs1036721570 2305 dbSNP
rs1304397471 2312 dbSNP
rs1195752731 2313 dbSNP
rs1007883313 2314 dbSNP
rs1309284094 2316 dbSNP
rs1263927533 2322 dbSNP
rs11040932 2323 dbSNP
rs890913259 2325 dbSNP
rs1237501731 2333 dbSNP
rs1308125076 2347 dbSNP
rs1212833708 2348 dbSNP
rs1045587107 2352 dbSNP
rs144337677 2356 dbSNP
rs932385981 2359 dbSNP
rs763175134 2362 dbSNP
rs1201436123 2366 dbSNP
rs1238865287 2367 dbSNP
rs11040931 2378 dbSNP
rs1053478587 2382 dbSNP
rs149641983 2394 dbSNP
rs534535393 2395 dbSNP
rs925273566 2411 dbSNP
rs765500691 2421 dbSNP
rs1375731665 2423 dbSNP
rs979401479 2426 dbSNP
rs759192917 2427 dbSNP
rs1283036445 2428 dbSNP
rs1443992985 2429 dbSNP
rs139390498 2437 dbSNP
rs1367815753 2440 dbSNP
rs1341949231 2444 dbSNP
rs1388155150 2447 dbSNP
rs1303848819 2450 dbSNP
rs1321943936 2452 dbSNP
rs1223405087 2457 dbSNP
rs976181537 2458 dbSNP
rs1464972261 2460 dbSNP
rs966646842 2461 dbSNP
rs1015091405 2469 dbSNP
rs181197933 2471 dbSNP
rs538342836 2472 dbSNP
rs952264791 2479 dbSNP
rs1027290548 2480 dbSNP
rs368887251 2481 dbSNP
rs569351704 2489 dbSNP
rs1169049573 2490 dbSNP
rs905508530 2494 dbSNP
rs1350024353 2501 dbSNP
rs1424465246 2511 dbSNP
rs1181395423 2518 dbSNP
rs1471837977 2520 dbSNP
rs949386163 2524 dbSNP
rs933507793 2525 dbSNP
rs1239490628 2538 dbSNP
rs1024502852 2539 dbSNP
rs1396851158 2541 dbSNP
rs1013995079 2542 dbSNP
rs35777343 2542 dbSNP
rs991318733 2543 dbSNP
rs1201095162 2544 dbSNP
rs891660668 2544 dbSNP
rs878908165 2546 dbSNP
rs879054178 2546 dbSNP
rs1052898926 2547 dbSNP
rs1194065014 2547 dbSNP
rs1027251053 2548 dbSNP
rs1185928852 2549 dbSNP
rs935909298 2549 dbSNP
rs544684627 2550 dbSNP
rs904420384 2550 dbSNP
rs1162117271 2551 dbSNP
rs1319160614 2553 dbSNP
rs1419938438 2554 dbSNP
rs1299125351 2555 dbSNP
rs111251713 2561 dbSNP
rs1270166513 2562 dbSNP
rs1355968286 2562 dbSNP
rs1379953777 2562 dbSNP
rs1429229319 2562 dbSNP
rs1439909811 2562 dbSNP
rs866843573 2562 dbSNP
rs1226179285 2563 dbSNP
rs1362808063 2563 dbSNP
rs1360209891 2564 dbSNP
rs1459233566 2564 dbSNP
rs1357848424 2567 dbSNP
rs150514367 2581 dbSNP
rs562263812 2590 dbSNP
rs921949470 2591 dbSNP
rs188535515 2593 dbSNP
rs1241109289 2595 dbSNP
rs528710845 2599 dbSNP
rs944769662 2615 dbSNP
rs1008109151 2617 dbSNP
rs1349274479 2619 dbSNP
rs890804788 2622 dbSNP
rs1027963227 2631 dbSNP
rs1162584250 2638 dbSNP
rs1403741520 2640 dbSNP
rs559896141 2645 dbSNP
rs1428514100 2654 dbSNP
rs1457852128 2657 dbSNP
rs997018934 2662 dbSNP
rs1378041646 2676 dbSNP
rs1415963254 2681 dbSNP
rs1158286485 2695 dbSNP
rs983555275 2698 dbSNP
rs1416640850 2700 dbSNP
rs1174959190 2711 dbSNP
rs1447546369 2717 dbSNP
rs776470630 2736 dbSNP
rs1333482059 2739 dbSNP
rs546362425 2742 dbSNP
rs186647619 2753 dbSNP
rs181476690 2754 dbSNP
rs1180955230 2763 dbSNP
rs1221577000 2764 dbSNP
rs1262483292 2768 dbSNP
rs1458487172 2771 dbSNP
rs980307745 2776 dbSNP
rs1246709906 2779 dbSNP
rs1199934432 2780 dbSNP
rs543859493 2783 dbSNP
rs1436805555 2785 dbSNP
rs1023970236 2787 dbSNP
rs1247650645 2789 dbSNP
rs1219929433 2795 dbSNP
rs1481652932 2807 dbSNP
rs549355607 2808 dbSNP
rs1429153794 2812 dbSNP
rs1466606554 2814 dbSNP
rs1172839840 2817 dbSNP
rs1394500730 2824 dbSNP
rs11040930 2828 dbSNP
rs955779905 2829 dbSNP
rs773180258 2830 dbSNP
rs1000056583 2833 dbSNP
rs1282427477 2834 dbSNP
rs1289912362 2839 dbSNP
rs771524832 2841 dbSNP
rs1239016854 2863 dbSNP
rs142319477 2867 dbSNP
rs1220407434 2868 dbSNP
rs1249099186 2874 dbSNP
rs1338256825 2874 dbSNP
rs764867690 2888 dbSNP
rs917927905 2894 dbSNP
rs72909075 2897 dbSNP
rs748951967 2900 dbSNP
rs996773669 2901 dbSNP
rs1366638593 2909 dbSNP
rs1291721214 2911 dbSNP
rs558321881 2914 dbSNP
rs1196042021 2926 dbSNP
rs1438446240 2928 dbSNP
rs190274445 2929 dbSNP
rs1163928430 2934 dbSNP
rs1367634757 2935 dbSNP
rs1422976659 2937 dbSNP
rs1040341227 2938 dbSNP
rs7951473 2942 dbSNP
rs1325809624 2948 dbSNP
rs1419135875 2958 dbSNP
rs574264339 2960 dbSNP
rs111635138 2961 dbSNP
rs1356752773 2966 dbSNP
rs1160680489 2968 dbSNP
rs535859510 2970 dbSNP
rs137871015 2972 dbSNP
rs111707944 2974 dbSNP
rs548651237 2977 dbSNP
rs534245140 2979 dbSNP
rs528775005 2980 dbSNP
rs1190005365 2982 dbSNP
rs920754104 2982 dbSNP
rs955252622 2983 dbSNP
rs574881929 2984 dbSNP
rs79683140 2990 dbSNP
rs766930625 2995 dbSNP
rs552809600 3005 dbSNP
rs1247770689 3006 dbSNP
rs996514594 3016 dbSNP
rs892912362 3017 dbSNP
rs1487014004 3033 dbSNP
rs916906576 3036 dbSNP
rs1380646811 3049 dbSNP
rs992476496 3055 dbSNP
rs955881474 3062 dbSNP
rs879149863 3075 dbSNP
rs1032761632 3076 dbSNP
rs998973901 3085 dbSNP
rs999939358 3090 dbSNP
rs1396551939 3094 dbSNP
rs968581074 3095 dbSNP
rs1028121755 3100 dbSNP
rs1244753120 3109 dbSNP
rs1042502614 3121 dbSNP
rs532725192 3127 dbSNP
rs1220901458 3130 dbSNP
rs1424955826 3131 dbSNP
rs950709022 3135 dbSNP
rs758484302 3148 dbSNP
rs1485792309 3153 dbSNP
rs1201587949 3157 dbSNP
rs1245039323 3161 dbSNP
rs1040795214 3180 dbSNP
rs1008922644 3188 dbSNP
rs1183200885 3194 dbSNP
rs1368262985 3207 dbSNP
rs145379346 3212 dbSNP
rs1399553221 3222 dbSNP
rs1156597473 3224 dbSNP
rs1363072163 3228 dbSNP
rs1466487759 3230 dbSNP
rs375634047 3238 dbSNP
rs752838246 3241 dbSNP
rs1300301055 3242 dbSNP
rs1047835866 3246 dbSNP
rs1451219950 3248 dbSNP
rs1331474840 3250 dbSNP
rs571652154 3251 dbSNP
rs920043226 3253 dbSNP
rs1038462552 3254 dbSNP
rs1316765360 3263 dbSNP
rs555000924 3274 dbSNP
rs1265593045 3286 dbSNP
rs759795838 3312 dbSNP
rs1044534097 3316 dbSNP
rs1203045207 3327 dbSNP
rs530069339 3340 dbSNP
rs1481733153 3341 dbSNP
rs921184726 3342 dbSNP
rs146325710 3351 dbSNP
rs3832780 3351 dbSNP
rs1433610417 3354 dbSNP
rs1183923342 3362 dbSNP
rs1427061919 3363 dbSNP
rs1469230633 3366 dbSNP
rs917534605 3368 dbSNP
rs993477386 3372 dbSNP
rs1033054806 3376 dbSNP
rs561330953 3376 dbSNP
rs998573385 3377 dbSNP
rs1285589925 3380 dbSNP
rs541007223 3385 dbSNP
rs967075775 3387 dbSNP
rs924272986 3399 dbSNP
rs1013693664 3400 dbSNP
rs1202673326 3402 dbSNP
rs114619932 3403 dbSNP
rs117008525 3408 dbSNP
rs1224349193 3410 dbSNP
rs112613018 3425 dbSNP
rs1266523927 3435 dbSNP
rs766171191 3436 dbSNP
rs760482113 3440 dbSNP
rs1194383151 3444 dbSNP
rs779842745 3446 dbSNP
rs1420988603 3447 dbSNP
rs1426267164 3448 dbSNP
rs965566929 3456 dbSNP
rs1169160373 3465 dbSNP
rs1216665100 3474 dbSNP
rs1338554976 3485 dbSNP
rs1280129482 3489 dbSNP
rs1426179597 3489 dbSNP
rs1019557597 3493 dbSNP
rs544823067 3496 dbSNP
rs1294944704 3499 dbSNP
rs1360363224 3503 dbSNP
rs72909074 3513 dbSNP
rs908615909 3526 dbSNP
rs1490136148 3531 dbSNP
rs1217217382 3542 dbSNP
rs1243726989 3543 dbSNP
rs555872931 3544 dbSNP
rs1407210501 3550 dbSNP
rs536320744 3553 dbSNP
rs57831155 3562 dbSNP
rs899224653 3568 dbSNP
rs1446078887 3570 dbSNP
rs1161326125 3575 dbSNP
rs1044974616 3585 dbSNP
rs1464477213 3588 dbSNP
rs948946185 3590 dbSNP
rs1425189786 3591 dbSNP
rs895967235 3606 dbSNP
rs1319430637 3608 dbSNP
rs1422705323 3614 dbSNP
rs921059995 3619 dbSNP
rs975365835 3621 dbSNP
rs1183174940 3624 dbSNP
rs957485712 3628 dbSNP
rs925657436 3631 dbSNP
rs1359022637 3635 dbSNP
rs1224090781 3636 dbSNP
rs1057408635 3644 dbSNP
rs977036797 3645 dbSNP
rs1315043902 3646 dbSNP
rs967127890 3658 dbSNP
rs1023999132 3661 dbSNP
rs1243187417 3667 dbSNP
rs1237289460 3676 dbSNP
rs553741353 3680 dbSNP
rs771008888 3682 dbSNP
rs1439928819 3684 dbSNP
rs1159447215 3690 dbSNP
rs762148740 3693 dbSNP
rs1399458813 3698 dbSNP
rs1159063861 3699 dbSNP
rs898725607 3700 dbSNP
rs1258611568 3702 dbSNP
rs947139218 3703 dbSNP
rs921047195 3705 dbSNP
rs1454600541 3712 dbSNP
rs185518317 3715 dbSNP
rs566399319 3719 dbSNP
rs1382221801 3723 dbSNP
rs1443278043 3726 dbSNP
rs867248681 3727 dbSNP
rs1370962496 3728 dbSNP
rs113963212 3729 dbSNP
rs1384011011 3742 dbSNP
rs1325626978 3743 dbSNP
rs532789424 3745 dbSNP
rs570241442 3747 dbSNP
rs550344263 3750 dbSNP
rs530201052 3751 dbSNP
rs934032005 3754 dbSNP
rs1234927097 3769 dbSNP
rs899676380 3774 dbSNP
rs1039916826 3776 dbSNP
rs982664303 3777 dbSNP
rs34692937 3780 dbSNP
rs951264692 3788 dbSNP
rs868204983 3793 dbSNP
rs1026283714 3808 dbSNP
rs73393200 3809 dbSNP
rs1471244946 3812 dbSNP
rs899160751 3824 dbSNP
rs925847232 3825 dbSNP
rs1366144236 3832 dbSNP
rs112874478 3834 dbSNP
rs547772844 3837 dbSNP
rs1331188099 3842 dbSNP
rs1334228031 3845 dbSNP
rs960456 3849 dbSNP
rs768118017 3858 dbSNP
rs1347263313 3859 dbSNP
rs895990479 3868 dbSNP
rs1176600073 3875 dbSNP
rs1458918340 3876 dbSNP
rs192693445 3880 dbSNP
rs916875635 3885 dbSNP
rs1197155116 3888 dbSNP
rs992544139 3892 dbSNP
rs757409796 3893 dbSNP
rs1209096065 3895 dbSNP
rs1204803673 3899 dbSNP
rs1057475339 3900 dbSNP
rs141624077 3901 dbSNP
rs1197939822 3907 dbSNP
rs903412346 3919 dbSNP
rs148258994 3920 dbSNP
rs947064216 3924 dbSNP
rs920920938 3931 dbSNP
rs562335255 3934 dbSNP
rs1394521544 3938 dbSNP
rs1409628304 3943 dbSNP
rs1303524528 3947 dbSNP
rs143106595 3952 dbSNP
rs963028410 3963 dbSNP
rs1017197348 3965 dbSNP
rs943746139 3966 dbSNP
rs748940315 3967 dbSNP
rs1238498649 3968 dbSNP
rs982549619 3969 dbSNP
rs1267901512 3971 dbSNP
rs778033475 3972 dbSNP
rs1246344402 3982 dbSNP
rs1292922310 3984 dbSNP
rs1379493360 3988 dbSNP
rs560716419 3989 dbSNP
rs1490957584 3991 dbSNP
rs775057007 3992 dbSNP
rs768772061 3996 dbSNP
rs1267228325 3999 dbSNP
rs1448090908 4002 dbSNP
rs1386657886 4007 dbSNP
rs1195350280 4012 dbSNP
rs1387988602 4015 dbSNP
rs919865087 4020 dbSNP
rs1294821061 4025 dbSNP
rs973955100 4028 dbSNP
rs1029643076 4038 dbSNP
rs998297384 4041 dbSNP
rs1424721517 4042 dbSNP
rs1385495865 4043 dbSNP
rs963453108 4044 dbSNP
rs771374919 4063 dbSNP
rs1325387886 4067 dbSNP
rs747380616 4076 dbSNP
rs1039566843 4085 dbSNP
rs1356868044 4086 dbSNP
rs1244158942 4092 dbSNP
rs1265244816 4093 dbSNP
rs188070619 4117 dbSNP
rs1441316686 4136 dbSNP
rs778364156 4137 dbSNP
rs749321418 4138 dbSNP
rs1207481700 4145 dbSNP
rs1259702145 4153 dbSNP
rs1464536785 4158 dbSNP
rs960371689 4165 dbSNP
rs1245152436 4168 dbSNP
rs1443012915 4170 dbSNP
rs149114072 4178 dbSNP
rs999048717 4179 dbSNP
rs904487605 4191 dbSNP
rs1431326538 4193 dbSNP
rs149648157 4194 dbSNP
rs748667469 4196 dbSNP
rs916933005 4197 dbSNP
rs780138561 4200 dbSNP
rs1338141538 4201 dbSNP
rs1380051277 4206 dbSNP
rs779015530 4214 dbSNP
rs547200283 4215 dbSNP
rs1312459459 4225 dbSNP
rs115751693 4228 dbSNP
rs183747283 4238 dbSNP
rs191347403 4239 dbSNP
rs1039741672 4240 dbSNP
rs1329110387 4241 dbSNP
rs766621849 4243 dbSNP
rs912273993 4245 dbSNP
rs1460139188 4249 dbSNP
rs145064356 4252 dbSNP
rs929847930 4255 dbSNP
rs1250945424 4258 dbSNP
rs1017082378 4259 dbSNP
rs983047537 4263 dbSNP
rs1470270265 4283 dbSNP
rs1177955311 4288 dbSNP
rs919759287 4296 dbSNP
rs1465210075 4302 dbSNP
rs570302085 4304 dbSNP
rs1285741729 4308 dbSNP
rs1029690593 4310 dbSNP
rs755842095 4317 dbSNP
rs998579482 4324 dbSNP
rs899947256 4325 dbSNP
rs1018771219 4329 dbSNP
rs915927677 4333 dbSNP
rs1359276394 4334 dbSNP
rs1321566239 4336 dbSNP
rs1295974935 4337 dbSNP
rs1252069990 4338 dbSNP
rs1481745758 4339 dbSNP
rs1193803306 4345 dbSNP
rs1250880502 4350 dbSNP
rs61555931 4352 dbSNP
rs1201559733 4359 dbSNP
rs960051098 4361 dbSNP
rs1041503246 4363 dbSNP
rs1010133061 4364 dbSNP
rs1035806116 4366 dbSNP
rs1056835006 4367 dbSNP
rs937002118 4369 dbSNP
rs1406056516 4372 dbSNP
rs1305440581 4374 dbSNP
rs1366154955 4375 dbSNP
rs1464336493 4380 dbSNP
rs1296402473 4381 dbSNP
rs1309471598 4384 dbSNP
rs1225607240 4388 dbSNP
rs1273616992 4392 dbSNP
rs115394329 4393 dbSNP
rs147004699 4403 dbSNP
rs1480813500 4408 dbSNP
rs1262505664 4418 dbSNP
rs941762380 4423 dbSNP
rs1191817510 4424 dbSNP
rs1263293356 4432 dbSNP
rs1426362535 4435 dbSNP
rs1021763238 4436 dbSNP
rs1011838992 4437 dbSNP
rs1165869397 4440 dbSNP
rs547538328 4441 dbSNP
rs1348587948 4443 dbSNP
rs767361646 4455 dbSNP
rs1436465690 4459 dbSNP
rs1285196249 4462 dbSNP
rs1364217571 4463 dbSNP
rs900052051 4466 dbSNP
rs76589294 4477 dbSNP
rs1360482249 4481 dbSNP
rs1343312327 4484 dbSNP
rs1287488918 4489 dbSNP
rs1321038285 4496 dbSNP
rs1265551222 4498 dbSNP
rs117568955 4502 dbSNP
rs1224596091 4505 dbSNP
rs1484635450 4521 dbSNP
rs951636187 4524 dbSNP
rs1339300046 4526 dbSNP
rs1243300466 4528 dbSNP
rs1275710128 4528 dbSNP
rs551307535 4531 dbSNP
rs761735201 4536 dbSNP
rs1160528172 4537 dbSNP
rs1347482572 4537 dbSNP
rs1412160834 4537 dbSNP
rs922840077 4537 dbSNP
rs1455677849 4538 dbSNP
rs774195778 4542 dbSNP
rs1383731677 4543 dbSNP
rs1454838115 4550 dbSNP
rs763639608 4560 dbSNP
rs4758437 4561 dbSNP
rs141580525 4564 dbSNP
rs1286200801 4571 dbSNP
rs1333079146 4579 dbSNP
rs575931918 4580 dbSNP
rs544435176 4598 dbSNP
rs1000701548 4599 dbSNP
rs1207486287 4600 dbSNP
rs898344128 4600 dbSNP
rs1020103362 4601 dbSNP
rs1404002004 4608 dbSNP
rs1212535066 4609 dbSNP
rs1472643848 4609 dbSNP
rs374012768 4609 dbSNP
rs573303912 4609 dbSNP
rs72061471 4609 dbSNP
rs55958530 4610 dbSNP
rs1465002505 4612 dbSNP
rs1421353938 4613 dbSNP
rs1168682583 4619 dbSNP
rs1158508054 4631 dbSNP
rs1057421652 4652 dbSNP
rs1001426110 4665 dbSNP
rs1332499899 4666 dbSNP
rs1358826759 4667 dbSNP
rs948016163 4673 dbSNP
rs1242985225 4677 dbSNP
rs186910035 4681 dbSNP
rs1348541578 4683 dbSNP
rs1441064034 4687 dbSNP
rs758489635 4687 dbSNP
rs777729603 4695 dbSNP
rs1227780289 4701 dbSNP
rs1283331183 4702 dbSNP
rs765782050 4708 dbSNP
rs758210866 4709 dbSNP
rs938716323 4710 dbSNP
rs1317876057 4717 dbSNP
rs1438056556 4724 dbSNP
rs1205598501 4726 dbSNP
rs1254493686 4727 dbSNP
rs928616772 4730 dbSNP
rs1182145205 4735 dbSNP
rs560228650 4745 dbSNP
rs1430050896 4776 dbSNP
rs1481431677 4780 dbSNP
rs539929724 4783 dbSNP
rs941781435 4784 dbSNP
rs907609984 4787 dbSNP
rs977504460 4790 dbSNP
rs1047293256 4791 dbSNP
rs1330632154 4793 dbSNP
rs752495425 4798 dbSNP
rs144772525 4799 dbSNP
rs1021812717 4805 dbSNP
rs922754468 4822 dbSNP
rs1445295990 4829 dbSNP
rs977416622 4830 dbSNP
rs1384768069 4833 dbSNP
rs139731015 4837 dbSNP
rs778573755 4842 dbSNP
rs1277177080 4843 dbSNP
rs1340546558 4847 dbSNP
rs1398103193 4848 dbSNP
rs151092806 4855 dbSNP
rs964298229 4856 dbSNP
rs1453847830 4859 dbSNP
rs964224496 4861 dbSNP
rs1018969304 4864 dbSNP
rs1008479105 4876 dbSNP
rs183293500 4886 dbSNP
rs1420249888 4890 dbSNP
rs1246268559 4896 dbSNP
rs1475845665 4898 dbSNP
rs375573202 4901 dbSNP
rs1025231945 4915 dbSNP
rs993893972 4919 dbSNP
rs1163981956 4930 dbSNP
rs116531782 4931 dbSNP
rs1385069920 4934 dbSNP
rs556551527 4935 dbSNP
rs1184643672 4947 dbSNP
rs72909071 4963 dbSNP
rs894971902 4965 dbSNP
rs567740914 4968 dbSNP
rs1035501537 4969 dbSNP
rs745574447 4970 dbSNP
rs1293030538 4977 dbSNP
rs1359071951 4979 dbSNP
rs373543918 4981 dbSNP
rs939242776 4985 dbSNP
rs1208619885 4989 dbSNP
rs547896536 5002 dbSNP
rs1226088387 5003 dbSNP
rs1361217564 5004 dbSNP
rs977389980 5015 dbSNP
rs946129660 5025 dbSNP
rs914681761 5026 dbSNP
rs990236424 5041 dbSNP
rs964593310 5047 dbSNP
rs1016370021 5049 dbSNP
rs1018406480 5057 dbSNP
rs1385611089 5070 dbSNP
rs1005880420 5074 dbSNP
rs772601735 5075 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL35
Disease MIMAT0018189
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020022. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020022
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL35 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000254605.6 | 3UTR | UCAAGCUUUCCAAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000254605.6 | 3UTR | UCAAGCUUUCCAAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000254605.6 | 3UTR | UCAAGCUUUCCAAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
111 hsa-miR-3915 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059544 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 2 2
MIRT081703 ZNF507 zinc finger protein 507 2 2
MIRT083311 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT119046 SFT2D3 SFT2 domain containing 3 2 2
MIRT189381 TXLNA taxilin alpha 2 4
MIRT195895 C16ORF72 chromosome 16 open reading frame 72 2 6
MIRT223807 OXR1 oxidation resistance 1 2 2
MIRT292954 ZNF146 zinc finger protein 146 2 4
MIRT293949 RPL13A ribosomal protein L13a 2 6
MIRT300900 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT339332 SESN2 sestrin 2 2 2
MIRT349304 ZNF317 zinc finger protein 317 2 2
MIRT364736 TOR1B torsin family 1 member B 2 2
MIRT366233 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT384605 CLIC4 chloride intracellular channel 4 2 2
MIRT401745 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT443169 UBL3 ubiquitin like 3 2 2
MIRT444215 METTL12 methyltransferase like 12 2 2
MIRT444375 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT445340 TCEANC transcription elongation factor A N-terminal and central domain containing 2 2
MIRT445474 KDM6A lysine demethylase 6A 2 2
MIRT445598 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT445630 TMEM50A transmembrane protein 50A 2 2
MIRT446012 VNN1 vanin 1 2 2
MIRT446115 ASTN1 astrotactin 1 2 2
MIRT446248 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT446382 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446940 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446967 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT447178 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447209 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447237 IHH indian hedgehog 2 2
MIRT447807 EMX1 empty spiracles homeobox 1 2 2
MIRT447853 RRP8 ribosomal RNA processing 8 2 4
MIRT448054 MMP15 matrix metallopeptidase 15 2 2
MIRT448094 RASD2 RASD family member 2 2 2
MIRT448704 KLHL11 kelch like family member 11 2 2
MIRT448851 FEM1C fem-1 homolog C 2 2
MIRT449488 ZBTB4 zinc finger and BTB domain containing 4 2 2
MIRT449785 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT450774 PDE3A phosphodiesterase 3A 2 2
MIRT451124 ZNF99 zinc finger protein 99 2 2
MIRT452676 GPR156 G protein-coupled receptor 156 2 2
MIRT452888 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453188 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453353 ZNF3 zinc finger protein 3 2 2
MIRT454502 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT454629 FAM83H family with sequence similarity 83 member H 2 2
MIRT455183 AGTRAP angiotensin II receptor associated protein 2 2
MIRT458204 FOXL2 forkhead box L2 2 2
MIRT458723 CES2 carboxylesterase 2 2 2
MIRT458942 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT460304 FLCN folliculin 2 2
MIRT460989 SYT7 synaptotagmin 7 2 2
MIRT461697 ZNF426 zinc finger protein 426 2 2
MIRT461903 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462193 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT462290 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT463795 XPOT exportin for tRNA 2 2
MIRT464649 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 4
MIRT465911 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 4
MIRT465992 TMEM189 transmembrane protein 189 2 4
MIRT466302 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT466575 TBC1D2B TBC1 domain family member 2B 2 2
MIRT470558 POU2F1 POU class 2 homeobox 1 2 2
MIRT471333 PERP PERP, TP53 apoptosis effector 2 2
MIRT471659 PALM2 paralemmin 2 2 2
MIRT472363 TSPAN1 tetraspanin 1 2 2
MIRT473468 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT474702 KIF3A kinesin family member 3A 2 2
MIRT476067 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT476077 GRB2 growth factor receptor bound protein 2 2 2
MIRT476423 GBA2 glucosylceramidase beta 2 2 2
MIRT476463 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT477877 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT478240 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT479460 CDK6 cyclin dependent kinase 6 2 2
MIRT481030 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT491496 HLA-DOA major histocompatibility complex, class II, DO alpha 2 2
MIRT497585 SLC23A1 solute carrier family 23 member 1 2 2
MIRT498542 TMEM30B transmembrane protein 30B 2 2
MIRT499263 NBPF11 NBPF member 11 2 2
MIRT504698 ZNF117 zinc finger protein 117 2 2
MIRT511288 KLHL15 kelch like family member 15 2 4
MIRT523121 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT529601 H1F0 H1 histone family member 0 2 2
MIRT533481 TRIM71 tripartite motif containing 71 2 2
MIRT535571 NUP37 nucleoporin 37 2 4
MIRT537869 EDA2R ectodysplasin A2 receptor 2 2
MIRT538010 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552681 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 4
MIRT554986 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT556659 KMT2D lysine methyltransferase 2D 2 4
MIRT557437 GTPBP2 GTP binding protein 2 2 2
MIRT560813 CRTAP cartilage associated protein 2 2
MIRT562115 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563103 IFRD2 interferon related developmental regulator 2 2 2
MIRT574199 LMNB1 lamin B1 2 2
MIRT623920 FMNL3 formin like 3 2 2
MIRT626551 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 2 2
MIRT645458 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 2 2
MIRT649082 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT659477 CLDN1 claudin 1 2 2
MIRT667950 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT701981 MIER3 MIER family member 3 2 2
MIRT708694 TFDP2 transcription factor Dp-2 2 2
MIRT709649 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710090 FAM229B family with sequence similarity 229 member B 2 2
MIRT718396 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
MIRT724972 TNS1 tensin 1 2 2
MIRT756050 HRH4 histamine receptor H4 2 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3915 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3915 Cisplatin + Decitabine sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3915 Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3915 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

Error report submission