miRTarBase - #MIRT447925


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pre-miRNA Information
pre-miRNA hsa-mir-302b   
Genomic Coordinates chr4: 112648485 - 112648557
Description Homo sapiens miR-302b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-302b-5p
Sequence 11| ACUUUAACAUGGAAGUGCUUUC |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN8489942 10 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs771747691 1 dbSNP
rs1413992790 2 dbSNP
rs1287454726 3 dbSNP
rs1407802102 5 dbSNP
rs556661625 8 dbSNP
rs114318553 9 dbSNP
rs183105707 12 dbSNP
rs759066554 13 dbSNP
rs1338196516 15 dbSNP
Putative Targets

Gene Information
Gene Symbol SCRN1   
Synonyms SES1
Description secernin 1
Transcript NM_001145513   
Other Transcripts NM_001145514 , NM_001145515 , NM_014766   
Expression
Putative miRNA Targets on SCRN1
3'UTR of SCRN1
(miRNA target sites are highlighted)		 
>SCRN1|NM_001145513|3'UTR
   1 AGTAAGCGTTCCCTTTCCCCTTCTTATTTAAGACTTCCCACCTTACTAAATTACCAGCAAAACAAACCACTCTCCTGTTT
  81 GAGTAAAATGAGAAAGTTAATATGTGGCCTCCTTTTCTGAAGCCAGATCAAACTGTTACCTTGTGTTCCACCTTGAATCT
 161 CACAGCGTCCCCTTCTGCAATGTAGGTCTCCTTCCTGTGCAGTGTAACATGTATCCCGTTGCCTGTTGTTCGGTTGTGTG
 241 ACTAATTGTGGATTTTAAGCTGCTATTATTGTATTTCAGTGGCAATGGACACATTAGCCTTTTACAAGAGGACTAGAGTT
 321 CATCAAGCCTTGAAAGGCAGGCTTCACAGTGCCGAGTTGGCGGGAAAAGCAAATTCTTTTGAAGTCTTAGTCTTTCCCTC
 401 AGTAGCGGTTTCTTTCAGGTTAACAAGAGGCATTTGTGCACACACACAGGGCTCTTGTGTGTGTTGTCAAGGGGACCCTC
 481 CGTGGCCTCCCGTGAGTGCATGCCTGTAGTGCACAGTGTCTCTACAGGTGTCTTCTGGGGGGCAGAACCAATTGGAAGGA
 561 AGAAAGGGACCCCTCTCCAGTCCTGGCTCCTTCCTACATCCTGGGCTCCTGAAGAAGCTGTCTTCCCATTTTCCATGCGC
 641 TGTGCTTATGTGTGGTGGACTGCAGAGCTGCTTCCACTTACAGGAGAGCTGATAATTTGTTAGCTGGAACCTATTCACTT
 721 CCGAGATTCAGACATAGCCATGCTGGTGGCCTTCTGAATCACTGCATGGATGTCCCAGGAGGCAGCTCTCCCCACACAGC
 801 AGCACAGCCATCACAGGATTCCTTGTGTAGAAATGATTCCCAGTCTAGTTACCAACAGCTAGTCTAGGAGTAATTGAATG
 881 GCCCTATGGCACAGTTCCACCCACAGAGTAGTGAATCTCTCAGCCAAGGAGGGAAAGAAAAGGAAGAACTCTTGACTATT
 961 TAGATTCTAGTTAAATATCTGGAATCCTAGCAGTCACTACATTATCTCAGCAGAGAGACTTTAATTAAACTGATTTGTTT
1041 CCAATGTCGGGTTCACTTAAAGGATTTGACTTACCACCAGAGCATAGAAAAGCATGCAAGGAAGACCAGATGGGCTTAGC
1121 ATTGGGAAGACAGAGGGCAAGGAGGTGATAGATGGATATAGAAGCATTTCTCTGCAGGATACCAGTTCAGGCCCCACCAT
1201 TCCTGCCAAGGCCATTACATCCCACAAACCCAAATACAAAGCAGCTGACTTCCCTGGATCTTCCCCCCACTCCTCACACC
1281 TCACATGTCCCAGGAGCTGCCTTCATTCAGGCGGGTAGCTGCACTGGGCATGGGGTGGTGGTGGGAGCTTACCGCCACCT
1361 ATTCAAGCTCTCAGCTACTCCTGAAACGGGCAGAGATGATGAACAGAAGTGTATGTAAATACAGCAGCTAGTGGGAGAGC
1441 ACCAGTTGGGCCTAATCCTGCCTCATCATTCTTGGCAGGAATCTGCAAATGGAAACATTGTGAGTATCAGCAATCTGGGA
1521 AGTGACAGGGTTAATAACTCCTTCCCAGAAGCTGTATCATGAGATTTTGAGGGGACCGAGCCCTGTTACATGGATGTGAA
1601 CAGTGAGGATCAGAGGTTTTATCAGAACACATTCTTTTTTTCTACCAACTCTCCAGAGCGTGAGTATAGGAGTGCCATGA
1681 GCTTTTTAGTCAGCAGTTTTGTAAACTCTGTATATAAAATCATTAACCACACATTGTGGGTGATGGGAAGACGATTTCAG
1761 CTGACAGAGTTAATGGCAACCAATAATGGTGGCCTGTAGCTGCTAAGAGCTTCACGCAGGTTTGGCCTGGGCTTTCACTG
1841 TTGGTGAATTTAGAGTGTCCTTTTAGGTGGGGCGGCTATTCTAAAAGTGTCTTTCTATCACTGTTAAGGGGGGGGGAAAG
1921 TGAGGTTCGAGGATGACGTAGGTAACTCTCCCCTCCCAAGTCCATGTTCCAAGTGGCTATGTAAAGCAAGATGATACAGA
2001 AAGCTGCTCTAAAATCTCACTGAGTGATTTCACCTTCGCCTACTATGAAATGTCTCATCAGACCTGACATGTCTGAGATA
2081 ACCAAGGTGATTCAGGATTTGATCAAAAGAAGTCTAGTAAGAATTAATTACACAGAAGCCTCCTTTCATTTCTATGGGCC
2161 AAACAAAGGCCATGGATAACCCTACCCGCTTTATGTCATTACCCATTGGGAAACACAATGGCTACTTCTGTTAGGGTACA
2241 TTGACCTTGGTCAAGCATCTTAAAGAAGGCAACCCTAATTGAGAGCTGTCTTGGCTAATACTCTGCACCACAATTGTGAT
2321 GTCCTAGTCCTACCACTAGAGGGCATGGTACAGCCTGGCAAAAGTTAAAAGGGGTGTGGCAGCTCCCATCAGGTCTGGAG
2401 GTGGTCTATAAGCACAGTTGACAGTTGTGCATTGGGATGGGTGGAGAAAGACGACAAGAGAGCAGAGAATCTGCTGATGT
2481 GGCTGCGCTTACTTTTAGTGACTTTATGTACTTATATTAACAGCTGGAAATAGGTTGTTGGGTTTTGAGCAGGCTGTTAT
2561 AGTGAGGAATGTTCATTTTTAAATGTTCCTAACAGATTTTGCTTTTGAAAAATGCTTGTTACATGAATAATTTGTGGACC
2641 AGGGATTGCTTTTCTGAAGGCAGTATAGGGAACATGAATATTCAAGATGAAATACAAAAATTATGTTTAAGGGTCATAGT
2721 GTATAAGTAGCTTCCTAGGAAACCCTTTGTGTATCTTTTCAGACTGGGGTGGGGGCTGAGCATGCTTGTGCAGAAAGAAG
2801 CCATAGCCAGAAAGGACAGAATCTCTCCCCCACTCCCTTGCCCCATAACCAAACATAAGCTAGCTAGTCTTGTCTAATAG
2881 ATGGGATTTACTATAGGTGAAGATAGCCCTCATATTCAAGGACAGAAGCTCTGGCAGGAGTAAATTAGCAAAGCAGAAAT
2961 AGTACCCTTTCATTCTTGGAGGTGCTTTGAAATTTTAGGTAGAATATAATCGAAATTATGGAGGTTCCTTAGTGCTCAAT
3041 AATATAAGACCTGGTGTTATTAGAACGAGTCTTTCTTATAAACTAACAGAGCAGGTATATGCCTGTTAGACCTTAGCTGT
3121 GGGGTTCCTTTACTATTGGGTGAATCATTAGGTATAAAAAATAATCATCAACCAGGCAAATTACTTTGCTTCCTAGCTGA
3201 TGTCATCCCACATTGGTACAGGTGTTATTCAGTACTGGGTGGTTCAGCAGGGAAGCCGGGTGGGACCAGTGTGTCTGTCA
3281 TGAAACCACTAACTGCATTCCTGACTGAAGAGCCATCTGTCATTTATTGGGGAAGGTCTTCAGTTGAGCTCTCAGCCTTA
3361 GGAAGGAAGCACGTGGAGGAGGGACGGAGGAGGTTCCCTTGCTGGGCATGCTTCGTAGAGGGCCAGGAGCAGCAGGTCAT
3441 GTGCACATGCCGTTGCAGCACAAGCTTATGCTTCCCGTAGCCGTGGCTTTTCATTCTGCACAGTCCCAGGTCCCAGCTCC
3521 CCTCTTATGGTTTCTGTCATAATGTGCTTTATCTGATTGACTCCAAACATCCCGAAATGTCACCTGCAGATTTCTCGTGG
3601 GAACCAATATGTACATGTTTGCAATTATGCTGTGAGAATTTAAATGTGTTAGATGGAAAATGCTATTGGCAGGGAATAAT
3681 AATAAAAAAAAAAGAAAATCATTCTGTTTCCTGCAGTGGGAACTGGCCATGTAGTCTTAACAGTCTTTTGTACAAATATC
3761 TACAAAGCAGATAATATCCCTATCCAGTGCTTGCCCTTGGAATTGTCTCTAAATGCATCAAGCATACAATAAAAAAAACT
3841 GAAATTAACATCCAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUUCGU--GAAGGU----ACAAUUUCa 5'
            |||::  :|||:|    ||||||:| 
Target 5' aaAAGTGTCTTTCTATCACTGTTAAGGg 3'
 1883 - 1910 144.00 -9.50
2 
miRNA  3' cuuucgugAAGGUACAAUUUca 5'
                  |||:| ||||||  
Target 5' tatttagaTTCTA-GTTAAAta 3'
 957 - 977 133.00 -5.30
3 
miRNA  3' cuuUCG-UGAAGGUACAAUUUCa 5'
             :|| |||||  |||||::| 
Target 5' aatGGCTACTTC--TGTTAGGGt 3'
 2217 - 2237 131.00 -13.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN2376240 7 COSMIC
COSN26557434 11 COSMIC
COSN26576497 24 COSMIC
COSN31544349 52 COSMIC
COSN26993961 58 COSMIC
COSN30494018 84 COSMIC
COSN31511724 93 COSMIC
COSN30507983 117 COSMIC
COSN30168461 119 COSMIC
COSN31592686 166 COSMIC
COSN14283663 167 COSMIC
COSN30512510 195 COSMIC
COSN31487069 265 COSMIC
COSN7977073 362 COSMIC
COSN8300028 433 COSMIC
COSN20104072 902 COSMIC
COSN20419765 903 COSMIC
COSN20091552 1268 COSMIC
COSN29230801 1326 COSMIC
COSN8353020 1353 COSMIC
COSN24882618 1372 COSMIC
COSN4868959 1812 COSMIC
COSN2218638 1907 COSMIC
COSN27592833 1908 COSMIC
COSN22645064 2110 COSMIC
COSN9984889 2331 COSMIC
COSN20104070 2450 COSMIC
COSN31589550 2745 COSMIC
COSN28739011 2761 COSMIC
COSN20527084 2769 COSMIC
COSN31539755 2876 COSMIC
COSN2218637 3031 COSMIC
COSN2218636 3352 COSMIC
COSN25658249 3523 COSMIC
COSN30540729 3594 COSMIC
COSN21473017 3674 COSMIC
COSN29091834 3683 COSMIC
COSN25919654 3686 COSMIC
COSN8300027 3692 COSMIC
COSN31523989 3745 COSMIC
COSN31597191 3851 COSMIC
rs17158483 1049 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750853246 1 dbSNP
rs886572748 4 dbSNP
rs763587731 7 dbSNP
rs191349402 8 dbSNP
rs1355808547 12 dbSNP
rs559196897 20 dbSNP
rs764870475 25 dbSNP
rs961041305 26 dbSNP
rs1401053306 30 dbSNP
rs1355240001 37 dbSNP
rs200712843 38 dbSNP
rs776500891 44 dbSNP
rs1015230096 46 dbSNP
rs1487151319 53 dbSNP
rs1192647159 59 dbSNP
rs937984380 63 dbSNP
rs765653098 67 dbSNP
rs986493577 68 dbSNP
rs925308286 69 dbSNP
rs1478742461 74 dbSNP
rs1172683223 90 dbSNP
rs1331167788 91 dbSNP
rs186571213 95 dbSNP
rs1366743119 96 dbSNP
rs1457621338 104 dbSNP
rs1163994940 107 dbSNP
rs1367670908 114 dbSNP
rs955151583 122 dbSNP
rs554114449 137 dbSNP
rs1028107483 142 dbSNP
rs1341737299 146 dbSNP
rs1044163683 149 dbSNP
rs1302064366 164 dbSNP
rs113598220 166 dbSNP
rs535954863 167 dbSNP
rs1339307894 176 dbSNP
rs1362123994 193 dbSNP
rs562333816 194 dbSNP
rs945471277 195 dbSNP
rs750303399 202 dbSNP
rs1399922683 208 dbSNP
rs914012446 211 dbSNP
rs1351040369 214 dbSNP
rs986577281 217 dbSNP
rs182545757 218 dbSNP
rs189936048 221 dbSNP
rs1009912492 222 dbSNP
rs1254173705 225 dbSNP
rs1423381120 228 dbSNP
rs921152401 230 dbSNP
rs975321021 231 dbSNP
rs1387360844 232 dbSNP
rs1418074957 236 dbSNP
rs1158447626 238 dbSNP
rs1053133017 240 dbSNP
rs962652871 244 dbSNP
rs1479565903 245 dbSNP
rs538823023 246 dbSNP
rs1301547738 260 dbSNP
rs1402100781 265 dbSNP
rs1396171187 266 dbSNP
rs1316491400 269 dbSNP
rs879064236 271 dbSNP
rs571491111 272 dbSNP
rs1292015087 275 dbSNP
rs1374253928 279 dbSNP
rs546850944 283 dbSNP
rs1016607759 285 dbSNP
rs1309753301 286 dbSNP
rs528346551 293 dbSNP
rs1004323074 294 dbSNP
rs1207743570 311 dbSNP
rs1255411436 314 dbSNP
rs907325165 315 dbSNP
rs1201158112 322 dbSNP
rs951162980 325 dbSNP
rs17158488 326 dbSNP
rs1178192231 331 dbSNP
rs1346378383 334 dbSNP
rs1282069013 337 dbSNP
rs1421307861 341 dbSNP
rs1174388319 343 dbSNP
rs920100243 348 dbSNP
rs1221181616 351 dbSNP
rs1466982423 352 dbSNP
rs756318237 353 dbSNP
rs1341939659 354 dbSNP
rs896673199 356 dbSNP
rs1445584200 357 dbSNP
rs1278441627 361 dbSNP
rs548562653 362 dbSNP
rs1343199105 373 dbSNP
rs974326723 374 dbSNP
rs1002465293 376 dbSNP
rs767575194 379 dbSNP
rs908202844 381 dbSNP
rs1456458527 383 dbSNP
rs564236653 385 dbSNP
rs1198077161 392 dbSNP
rs1479500370 401 dbSNP
rs1043730469 406 dbSNP
rs17158486 407 dbSNP
rs892536326 412 dbSNP
rs1189886025 418 dbSNP
rs1051137686 419 dbSNP
rs1240687110 427 dbSNP
rs562969533 430 dbSNP
rs1420855293 437 dbSNP
rs1464700254 443 dbSNP
rs774831228 444 dbSNP
rs1355967979 445 dbSNP
rs1433794977 446 dbSNP
rs1292761805 447 dbSNP
rs555412429 449 dbSNP
rs975267201 452 dbSNP
rs1276296314 457 dbSNP
rs10480087 458 dbSNP
rs1022567317 463 dbSNP
rs1273774568 472 dbSNP
rs1201164275 473 dbSNP
rs1246491331 476 dbSNP
rs879854926 477 dbSNP
rs1009469535 481 dbSNP
rs1202022018 485 dbSNP
rs10479824 491 dbSNP
rs773668908 492 dbSNP
rs1002834971 500 dbSNP
rs1403251268 503 dbSNP
rs1213625871 507 dbSNP
rs1350099161 509 dbSNP
rs951151386 510 dbSNP
rs1296079212 514 dbSNP
rs1285711275 516 dbSNP
rs1400479031 517 dbSNP
rs1270873985 518 dbSNP
rs1226833430 528 dbSNP
rs1289504895 532 dbSNP
rs1448512505 537 dbSNP
rs1381899524 538 dbSNP
rs879195837 539 dbSNP
rs1334624542 551 dbSNP
rs565465032 554 dbSNP
rs992578905 558 dbSNP
rs960828705 562 dbSNP
rs1013435686 570 dbSNP
rs141004086 572 dbSNP
rs1409581094 573 dbSNP
rs1002821579 575 dbSNP
rs1417660179 580 dbSNP
rs1038970358 593 dbSNP
rs904086738 596 dbSNP
rs1445629043 598 dbSNP
rs908840286 606 dbSNP
rs573165436 608 dbSNP
rs1022998121 609 dbSNP
rs1243014806 614 dbSNP
rs1051291108 626 dbSNP
rs933625892 627 dbSNP
rs1357345951 632 dbSNP
rs1182275788 636 dbSNP
rs187936613 638 dbSNP
rs6976789 639 dbSNP
rs1051090523 644 dbSNP
rs183838011 645 dbSNP
rs1203270122 646 dbSNP
rs201782995 648 dbSNP
rs528017474 649 dbSNP
rs1228615923 655 dbSNP
rs768215052 658 dbSNP
rs1039538595 661 dbSNP
rs1208873311 670 dbSNP
rs1243162204 684 dbSNP
rs1448861227 686 dbSNP
rs1462398877 689 dbSNP
rs1377614635 691 dbSNP
rs1176321891 694 dbSNP
rs941217030 698 dbSNP
rs909789795 712 dbSNP
rs1470421907 714 dbSNP
rs983119170 718 dbSNP
rs1298767619 722 dbSNP
rs1413789967 723 dbSNP
rs1441601290 731 dbSNP
rs1003473523 735 dbSNP
rs1406836270 738 dbSNP
rs1352908861 739 dbSNP
rs746585141 740 dbSNP
rs929587543 742 dbSNP
rs1167197010 744 dbSNP
rs1425602718 745 dbSNP
rs1385004569 750 dbSNP
rs916925588 753 dbSNP
rs562030915 756 dbSNP
rs1343515649 766 dbSNP
rs1162110473 768 dbSNP
rs1219111674 787 dbSNP
rs1263219723 794 dbSNP
rs971362133 801 dbSNP
rs1023410353 802 dbSNP
rs1237260414 808 dbSNP
rs1438015960 827 dbSNP
rs575041839 829 dbSNP
rs1183751953 843 dbSNP
rs992526299 844 dbSNP
rs1244725219 850 dbSNP
rs556629059 865 dbSNP
rs1409384856 868 dbSNP
rs1012987805 873 dbSNP
rs898606747 876 dbSNP
rs1176085173 877 dbSNP
rs1038535501 880 dbSNP
rs6958600 886 dbSNP
rs1392127703 893 dbSNP
rs1331324199 903 dbSNP
rs202047794 904 dbSNP
rs28364760 906 dbSNP
rs550637502 906 dbSNP
rs6958587 910 dbSNP
rs1284547627 914 dbSNP
rs1051260800 919 dbSNP
rs1216297509 920 dbSNP
rs1256845723 924 dbSNP
rs138069845 927 dbSNP
rs1339696178 936 dbSNP
rs534928564 940 dbSNP
rs934263957 950 dbSNP
rs920922730 958 dbSNP
rs1039805735 964 dbSNP
rs528833652 966 dbSNP
rs1242077468 973 dbSNP
rs1271015998 975 dbSNP
rs780127975 978 dbSNP
rs6976421 987 dbSNP
rs1372532957 997 dbSNP
rs145459960 1001 dbSNP
rs1462688988 1005 dbSNP
rs1169811714 1009 dbSNP
rs1306203601 1012 dbSNP
rs1223240631 1015 dbSNP
rs914934826 1032 dbSNP
rs140368381 1040 dbSNP
rs569412627 1044 dbSNP
rs1295433803 1048 dbSNP
rs17158483 1049 dbSNP
rs982004716 1051 dbSNP
rs892433311 1055 dbSNP
rs1282138582 1059 dbSNP
rs370234522 1077 dbSNP
rs374828643 1083 dbSNP
rs998180772 1087 dbSNP
rs1022955945 1088 dbSNP
rs76866095 1090 dbSNP
rs1215718461 1094 dbSNP
rs1040224059 1095 dbSNP
rs962747485 1105 dbSNP
rs565488503 1106 dbSNP
rs888297340 1107 dbSNP
rs752896844 1121 dbSNP
rs546836655 1133 dbSNP
rs1199574006 1136 dbSNP
rs1367774632 1137 dbSNP
rs887254932 1138 dbSNP
rs145646190 1139 dbSNP
rs540846995 1140 dbSNP
rs191489260 1142 dbSNP
rs11540586 1146 dbSNP
rs1381618387 1161 dbSNP
rs1270655877 1164 dbSNP
rs1316893910 1166 dbSNP
rs1056798172 1169 dbSNP
rs937019737 1182 dbSNP
rs187609125 1188 dbSNP
rs1232142979 1189 dbSNP
rs1238042962 1192 dbSNP
rs1261307229 1197 dbSNP
rs1486788072 1203 dbSNP
rs1207022931 1204 dbSNP
rs1254113547 1210 dbSNP
rs1039957876 1218 dbSNP
rs927033621 1221 dbSNP
rs1486077756 1222 dbSNP
rs1387299856 1229 dbSNP
rs978935757 1235 dbSNP
rs1158799789 1249 dbSNP
rs181819611 1257 dbSNP
rs1313923967 1260 dbSNP
rs1300604810 1261 dbSNP
rs149974042 1263 dbSNP
rs988302837 1264 dbSNP
rs545104886 1268 dbSNP
rs1307411215 1273 dbSNP
rs1318680189 1278 dbSNP
rs577626102 1283 dbSNP
rs998130757 1285 dbSNP
rs1322996449 1290 dbSNP
rs2269976 1291 dbSNP
rs1288696053 1296 dbSNP
rs17323815 1307 dbSNP
rs1361427492 1312 dbSNP
rs1176468240 1316 dbSNP
rs1251645258 1317 dbSNP
rs1421398557 1318 dbSNP
rs545559338 1331 dbSNP
rs574026625 1337 dbSNP
rs1174501381 1342 dbSNP
rs1429179399 1345 dbSNP
rs1006056508 1353 dbSNP
rs973354952 1354 dbSNP
rs1426697486 1363 dbSNP
rs1195385139 1364 dbSNP
rs963006756 1375 dbSNP
rs1298565224 1376 dbSNP
rs1016910012 1380 dbSNP
rs982812554 1387 dbSNP
rs888572406 1388 dbSNP
rs555687388 1391 dbSNP
rs1047331720 1393 dbSNP
rs994023707 1414 dbSNP
rs900006126 1425 dbSNP
rs895721618 1426 dbSNP
rs1057084261 1451 dbSNP
rs1204016278 1457 dbSNP
rs1252263067 1458 dbSNP
rs936965902 1460 dbSNP
rs1484167734 1461 dbSNP
rs926954200 1464 dbSNP
rs766838183 1465 dbSNP
rs1263713755 1471 dbSNP
rs1197712329 1492 dbSNP
rs1204310785 1500 dbSNP
rs536676029 1501 dbSNP
rs1322935685 1507 dbSNP
rs1261414181 1517 dbSNP
rs947117859 1529 dbSNP
rs1200987882 1530 dbSNP
rs1018913628 1533 dbSNP
rs1229843425 1534 dbSNP
rs140464752 1538 dbSNP
rs988250390 1540 dbSNP
rs185153671 1543 dbSNP
rs1366134709 1548 dbSNP
rs906317640 1556 dbSNP
rs1381887350 1560 dbSNP
rs1285273738 1576 dbSNP
rs1214054512 1577 dbSNP
rs28364761 1578 dbSNP
rs976992195 1580 dbSNP
rs964041111 1589 dbSNP
rs373897344 1590 dbSNP
rs763413547 1591 dbSNP
rs571602835 1601 dbSNP
rs1220786667 1612 dbSNP
rs1291439905 1613 dbSNP
rs1490665629 1615 dbSNP
rs1225281840 1618 dbSNP
rs1390067859 1621 dbSNP
rs947848427 1622 dbSNP
rs1186562297 1628 dbSNP
rs144772502 1629 dbSNP
rs528651118 1631 dbSNP
rs11540584 1634 dbSNP
rs993972916 1635 dbSNP
rs1172247893 1642 dbSNP
rs1296330478 1642 dbSNP
rs1426483935 1642 dbSNP
rs1462161252 1643 dbSNP
rs895670607 1651 dbSNP
rs1372172592 1660 dbSNP
rs1035565954 1666 dbSNP
rs1430156511 1670 dbSNP
rs1168011493 1675 dbSNP
rs1364380445 1688 dbSNP
rs2269977 1689 dbSNP
rs1243619301 1703 dbSNP
rs982781631 1712 dbSNP
rs905815563 1714 dbSNP
rs951464832 1725 dbSNP
rs1459955589 1726 dbSNP
rs531076062 1730 dbSNP
rs563306186 1735 dbSNP
rs1215909169 1742 dbSNP
rs1243302287 1743 dbSNP
rs1459702185 1753 dbSNP
rs1182533538 1756 dbSNP
rs544633298 1769 dbSNP
rs1156564832 1774 dbSNP
rs1407233720 1783 dbSNP
rs753220273 1787 dbSNP
rs776343105 1791 dbSNP
rs533096612 1802 dbSNP
rs559175613 1803 dbSNP
rs1052818045 1804 dbSNP
rs541263927 1805 dbSNP
rs1018466985 1809 dbSNP
rs935479285 1815 dbSNP
rs573861432 1816 dbSNP
rs1278096012 1819 dbSNP
rs1449203090 1824 dbSNP
rs1350625655 1825 dbSNP
rs1224758837 1833 dbSNP
rs1225623032 1838 dbSNP
rs1011559812 1839 dbSNP
rs1362019785 1845 dbSNP
rs1243422069 1862 dbSNP
rs958308697 1865 dbSNP
rs1030668043 1867 dbSNP
rs369977502 1872 dbSNP
rs1045407210 1873 dbSNP
rs1160170042 1874 dbSNP
rs906208384 1879 dbSNP
rs1468336143 1881 dbSNP
rs1175771183 1883 dbSNP
rs555575611 1884 dbSNP
rs1046153975 1886 dbSNP
rs1416340306 1889 dbSNP
rs1335483679 1897 dbSNP
rs548227270 1897 dbSNP
rs1037570428 1899 dbSNP
rs1344142231 1900 dbSNP
rs942943252 1902 dbSNP
rs1222425317 1905 dbSNP
rs911499497 1907 dbSNP
rs1193651690 1908 dbSNP
rs552333230 1908 dbSNP
rs370311860 1909 dbSNP
rs570023810 1910 dbSNP
rs1025710433 1911 dbSNP
rs1479135044 1911 dbSNP
rs2269978 1914 dbSNP
rs959827156 1915 dbSNP
rs199732265 1917 dbSNP
rs557325394 1917 dbSNP
rs911369909 1917 dbSNP
rs1459175249 1919 dbSNP
rs371162837 1920 dbSNP
rs970359773 1924 dbSNP
rs1024669252 1925 dbSNP
rs1001416011 1928 dbSNP
rs555265408 1929 dbSNP
rs369064354 1933 dbSNP
rs1270940608 1937 dbSNP
rs1442647120 1940 dbSNP
rs1382130934 1941 dbSNP
rs1183994342 1944 dbSNP
rs1438476336 1946 dbSNP
rs1249974879 1948 dbSNP
rs1194289177 1953 dbSNP
rs745760177 1953 dbSNP
rs1191069901 1965 dbSNP
rs147288357 1968 dbSNP
rs1475838168 1973 dbSNP
rs1011631817 1979 dbSNP
rs1292937911 1980 dbSNP
rs1383701160 1981 dbSNP
rs1037937147 1992 dbSNP
rs1424602508 1992 dbSNP
rs1393512009 1994 dbSNP
rs1380075960 1997 dbSNP
rs1316958279 2003 dbSNP
rs145559399 2016 dbSNP
rs1230070700 2018 dbSNP
rs1312658954 2021 dbSNP
rs1357876555 2022 dbSNP
rs1281787600 2023 dbSNP
rs1052766252 2031 dbSNP
rs933080553 2037 dbSNP
rs1304319550 2038 dbSNP
rs553033428 2039 dbSNP
rs1041176905 2044 dbSNP
rs1190694419 2049 dbSNP
rs534916198 2050 dbSNP
rs1302258592 2051 dbSNP
rs942909690 2052 dbSNP
rs148578806 2063 dbSNP
rs1164574323 2068 dbSNP
rs770751214 2069 dbSNP
rs1452213199 2073 dbSNP
rs984407160 2085 dbSNP
rs1041084069 2094 dbSNP
rs144848816 2100 dbSNP
rs531114889 2101 dbSNP
rs1436626143 2107 dbSNP
rs1334359185 2113 dbSNP
rs1381541939 2113 dbSNP
rs1453161449 2117 dbSNP
rs2269979 2121 dbSNP
rs918598414 2123 dbSNP
rs1238163678 2130 dbSNP
rs989977581 2136 dbSNP
rs1329994315 2147 dbSNP
rs972763024 2148 dbSNP
rs1363266340 2151 dbSNP
rs1210667400 2154 dbSNP
rs958165653 2168 dbSNP
rs570913465 2180 dbSNP
rs1481515026 2181 dbSNP
rs781367534 2184 dbSNP
rs978323268 2187 dbSNP
rs970999569 2188 dbSNP
rs1035800940 2189 dbSNP
rs1222128202 2191 dbSNP
rs1458391166 2192 dbSNP
rs1173599214 2205 dbSNP
rs1025054268 2206 dbSNP
rs1469964003 2207 dbSNP
rs1304378684 2209 dbSNP
rs980330847 2214 dbSNP
rs1370839027 2218 dbSNP
rs1390592396 2221 dbSNP
rs1307701913 2225 dbSNP
rs1489966328 2238 dbSNP
rs1286853918 2239 dbSNP
rs1352223291 2243 dbSNP
rs969932474 2248 dbSNP
rs1369040990 2259 dbSNP
rs990540315 2265 dbSNP
rs1206236403 2270 dbSNP
rs959301507 2274 dbSNP
rs17158481 2275 dbSNP
rs1011496947 2279 dbSNP
rs1005944009 2283 dbSNP
rs1258382438 2285 dbSNP
rs886253909 2286 dbSNP
rs777096193 2288 dbSNP
rs780061662 2291 dbSNP
rs1473828193 2295 dbSNP
rs955674194 2299 dbSNP
rs758425653 2301 dbSNP
rs527859796 2305 dbSNP
rs997380424 2307 dbSNP
rs765928088 2314 dbSNP
rs532777740 2319 dbSNP
rs997161161 2325 dbSNP
rs1298513306 2326 dbSNP
rs149238934 2327 dbSNP
rs750878871 2330 dbSNP
rs901585059 2333 dbSNP
rs942681265 2345 dbSNP
rs371809569 2346 dbSNP
rs1156986562 2350 dbSNP
rs1053852926 2355 dbSNP
rs1305961331 2356 dbSNP
rs1007446266 2358 dbSNP
rs889963280 2364 dbSNP
rs17158479 2369 dbSNP
rs1484327112 2370 dbSNP
rs1220835459 2372 dbSNP
rs1268787679 2376 dbSNP
rs1430178729 2401 dbSNP
rs931573861 2403 dbSNP
rs918882984 2408 dbSNP
rs1417013008 2410 dbSNP
rs1037017442 2416 dbSNP
rs938693103 2418 dbSNP
rs978291997 2422 dbSNP
rs1170881305 2427 dbSNP
rs1391720681 2428 dbSNP
rs1479618019 2430 dbSNP
rs1244164673 2431 dbSNP
rs1422499829 2434 dbSNP
rs928675807 2435 dbSNP
rs1194373346 2436 dbSNP
rs1446888853 2437 dbSNP
rs949614249 2442 dbSNP
rs1366075324 2443 dbSNP
rs980231467 2447 dbSNP
rs970258934 2449 dbSNP
rs914421288 2452 dbSNP
rs991488380 2453 dbSNP
rs1204952860 2455 dbSNP
rs3216982 2456 dbSNP
rs1262036202 2457 dbSNP
rs1298819438 2458 dbSNP
rs1016366480 2463 dbSNP
rs984492752 2469 dbSNP
rs990425437 2479 dbSNP
rs955936583 2481 dbSNP
rs1223160168 2484 dbSNP
rs1031576997 2486 dbSNP
rs1324550398 2487 dbSNP
rs1338638477 2492 dbSNP
rs1188871252 2502 dbSNP
rs997263038 2508 dbSNP
rs1442584578 2510 dbSNP
rs1162669008 2515 dbSNP
rs528757085 2518 dbSNP
rs1406975452 2524 dbSNP
rs965699543 2528 dbSNP
rs1175847187 2534 dbSNP
rs540879471 2536 dbSNP
rs1343451689 2537 dbSNP
rs1430092689 2541 dbSNP
rs1017490292 2550 dbSNP
rs1367582872 2553 dbSNP
rs1450977397 2556 dbSNP
rs561871487 2560 dbSNP
rs868098426 2561 dbSNP
rs543593163 2564 dbSNP
rs756078677 2584 dbSNP
rs1421953002 2588 dbSNP
rs1282751431 2590 dbSNP
rs1315881456 2595 dbSNP
rs1208774956 2596 dbSNP
rs1269678629 2599 dbSNP
rs1459660424 2600 dbSNP
rs1007316935 2613 dbSNP
rs1168788059 2615 dbSNP
rs889777014 2623 dbSNP
rs1237767601 2630 dbSNP
rs1053818049 2639 dbSNP
rs139487275 2643 dbSNP
rs557756551 2645 dbSNP
rs1456819811 2651 dbSNP
rs995700213 2654 dbSNP
rs545419184 2655 dbSNP
rs897398113 2664 dbSNP
rs1037300670 2668 dbSNP
rs1468396698 2671 dbSNP
rs938642414 2679 dbSNP
rs1341503156 2683 dbSNP
rs1450628436 2694 dbSNP
rs577935898 2695 dbSNP
rs991067691 2699 dbSNP
rs538750470 2701 dbSNP
rs938291323 2701 dbSNP
rs908870412 2705 dbSNP
rs1320974233 2706 dbSNP
rs1462184487 2712 dbSNP
rs1202581249 2718 dbSNP
rs984460245 2720 dbSNP
rs1443996788 2724 dbSNP
rs1044843023 2727 dbSNP
rs369130153 2730 dbSNP
rs552920793 2731 dbSNP
rs1439156110 2732 dbSNP
rs1472849617 2750 dbSNP
rs548442048 2751 dbSNP
rs1183028906 2752 dbSNP
rs948826721 2753 dbSNP
rs1049393 2761 dbSNP
rs1049394 2769 dbSNP
rs1017880160 2770 dbSNP
rs754205555 2772 dbSNP
rs1007465498 2775 dbSNP
rs763809142 2785 dbSNP
rs1032343115 2803 dbSNP
rs760354057 2804 dbSNP
rs1000829981 2809 dbSNP
rs555588324 2813 dbSNP
rs924506128 2821 dbSNP
rs190035441 2822 dbSNP
rs965648518 2823 dbSNP
rs775293352 2831 dbSNP
rs1014106539 2841 dbSNP
rs570362990 2842 dbSNP
rs896639172 2843 dbSNP
rs986239425 2845 dbSNP
rs1346663486 2848 dbSNP
rs951811996 2849 dbSNP
rs1212612148 2864 dbSNP
rs1246585958 2872 dbSNP
rs186272176 2877 dbSNP
rs150533539 2885 dbSNP
rs1445917413 2886 dbSNP
rs897347656 2890 dbSNP
rs537224849 2893 dbSNP
rs1409671657 2897 dbSNP
rs1198222438 2904 dbSNP
rs1049306360 2911 dbSNP
rs928944437 2917 dbSNP
rs75204383 2919 dbSNP
rs907485141 2926 dbSNP
rs748040658 2931 dbSNP
rs1171117549 2933 dbSNP
rs1364224669 2939 dbSNP
rs1445712115 2940 dbSNP
rs948756691 2945 dbSNP
rs893189999 2946 dbSNP
rs1428136583 2949 dbSNP
rs528999734 2954 dbSNP
rs1054487086 2955 dbSNP
rs1269393474 2957 dbSNP
rs1179543395 2967 dbSNP
rs1342690082 2972 dbSNP
rs1230298485 2975 dbSNP
rs910380226 2978 dbSNP
rs934453487 2992 dbSNP
rs1289565472 2999 dbSNP
rs986410036 3005 dbSNP
rs957230378 3008 dbSNP
rs924453930 3009 dbSNP
rs975921340 3011 dbSNP
rs1191371364 3012 dbSNP
rs1032894573 3018 dbSNP
rs1435762132 3022 dbSNP
rs1450528145 3024 dbSNP
rs944623086 3034 dbSNP
rs1170855144 3039 dbSNP
rs1383951907 3044 dbSNP
rs1293647057 3045 dbSNP
rs1222991156 3046 dbSNP
rs910483416 3050 dbSNP
rs561762062 3053 dbSNP
rs4662 3054 dbSNP
rs1365444989 3058 dbSNP
rs1027383886 3066 dbSNP
rs971811796 3067 dbSNP
rs1339805800 3071 dbSNP
rs1441718433 3078 dbSNP
rs1245347416 3085 dbSNP
rs961505535 3087 dbSNP
rs545798643 3089 dbSNP
rs17158477 3091 dbSNP
rs1267802083 3093 dbSNP
rs1425696351 3095 dbSNP
rs1465477906 3099 dbSNP
rs1055217913 3105 dbSNP
rs749076740 3110 dbSNP
rs13834 3111 dbSNP
rs1163283061 3124 dbSNP
rs375575373 3133 dbSNP
rs907437212 3148 dbSNP
rs1157708528 3175 dbSNP
rs1408034844 3185 dbSNP
rs1023649430 3187 dbSNP
rs537502702 3188 dbSNP
rs1012894778 3197 dbSNP
rs769601788 3199 dbSNP
rs372537082 3203 dbSNP
rs572237095 3215 dbSNP
rs780262456 3218 dbSNP
rs1226679901 3228 dbSNP
rs758504141 3231 dbSNP
rs1330089257 3236 dbSNP
rs1217818984 3247 dbSNP
rs545800601 3256 dbSNP
rs1261484937 3257 dbSNP
rs1049395 3258 dbSNP
rs1201364069 3260 dbSNP
rs910257016 3266 dbSNP
rs1417810880 3274 dbSNP
rs1411978038 3275 dbSNP
rs147313619 3275 dbSNP
rs1223320431 3276 dbSNP
rs944567080 3282 dbSNP
rs1173891332 3288 dbSNP
rs1376688360 3294 dbSNP
rs910442045 3300 dbSNP
rs1348790286 3305 dbSNP
rs1466405324 3312 dbSNP
rs1304324975 3314 dbSNP
rs986472217 3318 dbSNP
rs935791965 3319 dbSNP
rs930288790 3321 dbSNP
rs559326101 3322 dbSNP
rs542097154 3326 dbSNP
rs114367718 3327 dbSNP
rs182126511 3328 dbSNP
rs992530021 3332 dbSNP
rs960745008 3335 dbSNP
rs1258064417 3342 dbSNP
rs189862314 3350 dbSNP
rs1482366090 3351 dbSNP
rs9912 3362 dbSNP
rs184787149 3372 dbSNP
rs1196624297 3373 dbSNP
rs1266262423 3375 dbSNP
rs142414500 3382 dbSNP
rs1157649124 3385 dbSNP
rs1455198315 3386 dbSNP
rs1222906487 3390 dbSNP
rs1169218982 3394 dbSNP
rs971988277 3404 dbSNP
rs1411765064 3408 dbSNP
rs1291818217 3411 dbSNP
rs777758612 3414 dbSNP
rs1013591341 3415 dbSNP
rs993704886 3419 dbSNP
rs1199690734 3421 dbSNP
rs1340565787 3422 dbSNP
rs1228083443 3428 dbSNP
rs566327810 3440 dbSNP
rs1218781878 3446 dbSNP
rs1264969736 3447 dbSNP
rs1032971191 3448 dbSNP
rs1188068634 3449 dbSNP
rs998835481 3452 dbSNP
rs1245814824 3455 dbSNP
rs1448690900 3464 dbSNP
rs903262961 3466 dbSNP
rs539807532 3468 dbSNP
rs14593 3476 dbSNP
rs535431515 3477 dbSNP
rs753165187 3482 dbSNP
rs563367711 3483 dbSNP
rs765704546 3501 dbSNP
rs1363259062 3506 dbSNP
rs1434857153 3512 dbSNP
rs1298747053 3518 dbSNP
rs570886541 3523 dbSNP
rs1802552 3534 dbSNP
rs1289780603 3541 dbSNP
rs1321871149 3542 dbSNP
rs1224324604 3547 dbSNP
rs1265911129 3548 dbSNP
rs920552663 3551 dbSNP
rs1369128065 3558 dbSNP
rs1036013200 3566 dbSNP
rs137936441 3573 dbSNP
rs192323498 3574 dbSNP
rs1384308112 3579 dbSNP
rs1249597832 3580 dbSNP
rs1033706804 3583 dbSNP
rs1181275859 3589 dbSNP
rs1288781356 3595 dbSNP
rs188181214 3596 dbSNP
rs552303363 3597 dbSNP
rs1386768884 3608 dbSNP
rs1456850459 3610 dbSNP
rs916055768 3616 dbSNP
rs1176580921 3621 dbSNP
rs554213343 3624 dbSNP
rs991710461 3628 dbSNP
rs1380504186 3631 dbSNP
rs1229566242 3634 dbSNP
rs534141776 3646 dbSNP
rs1328060489 3655 dbSNP
rs1209026391 3656 dbSNP
rs1172178621 3674 dbSNP
rs1428915767 3677 dbSNP
rs1440525365 3677 dbSNP
rs1033252004 3679 dbSNP
rs754141821 3679 dbSNP
rs1186594525 3680 dbSNP
rs1462631210 3683 dbSNP
rs1009171497 3684 dbSNP
rs560006523 3686 dbSNP
rs888762273 3688 dbSNP
rs967370440 3693 dbSNP
rs1041495699 3694 dbSNP
rs1360253594 3694 dbSNP
rs1413172909 3694 dbSNP
rs935733371 3694 dbSNP
rs945831739 3695 dbSNP
rs1018947357 3700 dbSNP
rs1228439512 3704 dbSNP
rs1289885076 3709 dbSNP
rs1342374367 3710 dbSNP
rs1009405399 3711 dbSNP
rs183754415 3712 dbSNP
rs1278989837 3716 dbSNP
rs1313895899 3717 dbSNP
rs1254496272 3723 dbSNP
rs1057411945 3725 dbSNP
rs1482795291 3739 dbSNP
rs879012693 3745 dbSNP
rs937301629 3748 dbSNP
rs1050685006 3751 dbSNP
rs371589242 3760 dbSNP
rs564776831 3762 dbSNP
rs952052156 3768 dbSNP
rs1297378038 3786 dbSNP
rs899071498 3787 dbSNP
rs1226804849 3791 dbSNP
rs1409927059 3793 dbSNP
rs1330264004 3802 dbSNP
rs920647769 3823 dbSNP
rs1329003515 3824 dbSNP
rs1435236988 3827 dbSNP
rs972136180 3831 dbSNP
rs1036296599 3836 dbSNP
rs548476175 3838 dbSNP
rs1019135329 3839 dbSNP
rs1225867663 3839 dbSNP
rs1342729946 3849 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000242059.5 | 3UTR | UCAAGCAUCUUAAAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000242059.5 | 3UTR | UCAAGCAUCUUAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.663 2.1e-4 -0.593 1.1e-3 24 Click to see details
GSE28260 Renal cortex and medulla 0.652 7.9e-3 0.764 1.2e-3 13 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.366 5.6e-2 0.041 4.3e-1 20 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.85 7.5e-2 -0.800 1.0e-1 4 Click to see details
GSE26953 Aortic valvular endothelial cells 0.255 1.1e-1 0.293 8.2e-2 24 Click to see details
GSE21849 B cell lymphoma -0.154 2.1e-1 0.343 3.4e-2 29 Click to see details
GSE14794 Lymphoblastoid cells -0.08 2.3e-1 -0.082 2.2e-1 90 Click to see details
GSE21687 Ependynoma primary tumors 0.067 3.0e-1 0.047 3.6e-1 64 Click to see details
GSE17498 Multiple myeloma 0.074 3.2e-1 -0.051 3.8e-1 40 Click to see details
GSE38226 Liver fibrosis -0.099 3.3e-1 -0.040 4.3e-1 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.087 3.4e-1 -0.028 4.5e-1 25 Click to see details
GSE17306 Multiple myeloma -0.054 3.6e-1 0.294 2.0e-2 49 Click to see details
GSE42095 Differentiated embryonic stem cells 0.048 4.1e-1 0.108 3.1e-1 23 Click to see details
GSE27834 Pluripotent stem cells 0.055 4.2e-1 -0.138 3.1e-1 16 Click to see details
GSE19350 CNS germ cell tumors -0.059 4.3e-1 -0.014 4.8e-1 12 Click to see details
GSE32688 Pancreatic cancer -0.01 4.8e-1 0.017 4.6e-1 32 Click to see details
GSE32688 Pancreatic cancer -0.01 4.8e-1 0.017 4.6e-1 32 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
109 hsa-miR-302b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088427 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT142406 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT162006 TFRC transferrin receptor 2 2
MIRT170893 PURB purine rich element binding protein B 2 2
MIRT203348 CCNT2 cyclin T2 2 4
MIRT207353 TGOLN2 trans-golgi network protein 2 2 2
MIRT208232 CNBP CCHC-type zinc finger nucleic acid binding protein 2 4
MIRT214733 HSPA9 heat shock protein family A (Hsp70) member 9 2 2
MIRT254842 NUP50 nucleoporin 50 2 2
MIRT257285 FOXC1 forkhead box C1 2 2
MIRT338890 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT400032 USP37 ubiquitin specific peptidase 37 2 2
MIRT404031 ATP9A ATPase phospholipid transporting 9A (putative) 2 8
MIRT405843 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 2
MIRT445847 FPGT fucose-1-phosphate guanylyltransferase 2 2
MIRT446350 EML6 echinoderm microtubule associated protein like 6 2 2
MIRT446649 BTBD7 BTB domain containing 7 2 2
MIRT447925 SCRN1 secernin 1 2 2
MIRT448575 PLCG1 phospholipase C gamma 1 2 2
MIRT463616 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT465782 TMOD3 tropomodulin 3 2 2
MIRT470261 PRR14L proline rich 14 like 2 2
MIRT471090 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT475612 HMGB1 high mobility group box 1 2 2
MIRT476824 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT483107 TYRP1 tyrosinase related protein 1 2 10
MIRT500537 XPO4 exportin 4 2 2
MIRT502525 EPHA2 EPH receptor A2 2 4
MIRT510989 PER1 period circadian clock 1 2 4
MIRT512540 ZNF793 zinc finger protein 793 2 4
MIRT513868 HOXA5 homeobox A5 2 2
MIRT520756 TFDP1 transcription factor Dp-1 2 6
MIRT524304 CTC1 CST telomere replication complex component 1 2 8
MIRT526306 JAKMIP2 janus kinase and microtubule interacting protein 2 2 2
MIRT526378 LSAMP limbic system-associated membrane protein 2 2
MIRT527438 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527511 ZNF134 zinc finger protein 134 2 2
MIRT528068 HES2 hes family bHLH transcription factor 2 2 2
MIRT528367 ZMYM1 zinc finger MYM-type containing 1 2 4
MIRT531804 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT532323 DUSP4 dual specificity phosphatase 4 2 2
MIRT532431 DHX33 DEAH-box helicase 33 2 2
MIRT534523 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT536660 INIP INTS3 and NABP interacting protein 2 2
MIRT538488 CLOCK clock circadian regulator 2 2
MIRT538593 CDK6 cyclin dependent kinase 6 2 2
MIRT539706 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT540306 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT546892 PURA purine rich element binding protein A 2 2
MIRT552738 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552781 YIPF6 Yip1 domain family member 6 2 2
MIRT553742 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 4
MIRT553909 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT554540 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT555319 PPP2CB protein phosphatase 2 catalytic subunit beta 2 2
MIRT555512 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT556221 MB21D2 Mab-21 domain containing 2 2 2
MIRT556292 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT556606 LDOC1L retrotransposon Gag like 6 2 4
MIRT556901 ISOC1 isochorismatase domain containing 1 2 2
MIRT557675 GATA6 GATA binding protein 6 2 2
MIRT560198 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT560493 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT566069 RCC2 regulator of chromosome condensation 2 2 2
MIRT568431 GDNF glial cell derived neurotrophic factor 2 2
MIRT570703 FAM69A family with sequence similarity 69 member A 2 2
MIRT571705 RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough 2 2
MIRT573152 ITGA9 integrin subunit alpha 9 2 2
MIRT574410 TFAP2A transcription factor AP-2 alpha 2 2
MIRT614823 PVRL4 nectin cell adhesion molecule 4 2 2
MIRT616507 COX7A2L cytochrome c oxidase subunit 7A2 like 2 2
MIRT618301 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT621188 FAM153B family with sequence similarity 153 member B 2 2
MIRT621594 WT1 Wilms tumor 1 2 2
MIRT623814 GGCX gamma-glutamyl carboxylase 2 2
MIRT624407 CCDC171 coiled-coil domain containing 171 2 2
MIRT625136 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT626121 MRRF mitochondrial ribosome recycling factor 2 2
MIRT626874 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627874 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT633670 FAM53B family with sequence similarity 53 member B 2 2
MIRT634285 SYAP1 synapse associated protein 1 2 2
MIRT640925 POU2F1 POU class 2 homeobox 1 2 2
MIRT642028 MYADM myeloid associated differentiation marker 2 2
MIRT643031 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT646122 SLC26A9 solute carrier family 26 member 9 2 2
MIRT646245 SNAP47 synaptosome associated protein 47 2 2
MIRT652457 TMEM2 transmembrane protein 2 2 2
MIRT657018 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT660586 APP amyloid beta precursor protein 2 2
MIRT664316 CD209 CD209 molecule 2 2
MIRT667113 OLA1 Obg like ATPase 1 2 2
MIRT668773 DCP2 decapping mRNA 2 2 2
MIRT698430 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT700216 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT710498 CAPRIN1 cell cycle associated protein 1 2 2
MIRT711836 AMOTL2 angiomotin like 2 2 2
MIRT713226 GPR75 G protein-coupled receptor 75 2 2
MIRT714415 TBC1D16 TBC1 domain family member 16 2 2
MIRT714490 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT715254 F9 coagulation factor IX 2 2
MIRT716250 PALM2 paralemmin 2 2 2
MIRT717261 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT717730 FGF1 fibroblast growth factor 1 2 2
MIRT719262 CD44 CD44 molecule (Indian blood group) 2 2
MIRT719398 SLC15A4 solute carrier family 15 member 4 2 2
MIRT720653 TMEM218 transmembrane protein 218 2 2
MIRT720777 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough 2 2
MIRT722059 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-302b Epirubicin approved 41867 Microarray osteosarcoma cells 23845851 2013 down-regualted
miR-302b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 up-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-302b (S)-3,5-dihydroxyphenylglycine (DHPG) NULL 443586 Quantitative real-time PCR mouse brain 22309833 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-302b Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-302b-5p Paclitaxel 36314 NSC125973 approved sensitive High Laryngeal Cancer cell line (Hep2)
hsa-miR-302b-5p Celastrol 12302620 NSC70931 sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Docetaxel 148124 NSC628503 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Doxorubicin 31703 NSC123127 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Taxol 36314 NSC125973 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-302b-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-302b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-302b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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