miRTarBase - #MIRT448039


—
pre-miRNA Information
pre-miRNA hsa-mir-3175   
Genomic Coordinates chr15: 92904399 - 92904475
Description Homo sapiens miR-3175 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3175
Sequence 10| CGGGGAGAGAACGCAGUGACGU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1449291045 4 dbSNP
rs372141302 4 dbSNP
rs72647784 4 dbSNP
rs1209664292 5 dbSNP
rs563454166 6 dbSNP
rs915251599 19 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SFRP1   
Synonyms FRP, FRP-1, FRP1, FrzA, SARP2
Description secreted frizzled related protein 1
Transcript NM_003012   
Expression
Putative miRNA Targets on SFRP1
3'UTR of SFRP1
(miRNA target sites are highlighted)		 
>SFRP1|NM_003012|3'UTR
   1 TTCTCCCGGGGGCAGGGTGGGGAGGGAGCCTCGGGTGGGGTGGGAGCGGGGGGGACAGTGCCCCGGGAACCCGGTGGGTC
  81 ACACACACGCACTGCGCCTGTCAGTAGTGGACATTGTAATCCAGTCGGCTTGTTCTTGCAGCATTCCCGCTCCCTTCCCT
 161 CCATAGCCACGCTCCAAACCCCAGGGTAGCCATGGCCGGGTAAAGCAAGGGCCATTTAGATTAGGAAGGTTTTTAAGATC
 241 CGCAATGTGGAGCAGCAGCCACTGCACAGGAGGAGGTGACAAACCATTTCCAACAGCAACACAGCCACTAAAACACAAAA
 321 AGGGGGATTGGGCGGAAAGTGAGAGCCAGCAGCAAAAACTACATTTTGCAACTTGTTGGTGTGGATCTATTGGCTGATCT
 401 ATGCCTTTCAACTAGAAAATTCTAATGATTGGCAAGTCACGTTGTTTTCAGGTCCAGAGTAGTTTCTTTCTGTCTGCTTT
 481 AAATGGAAACAGACTCATACCACACTTACAATTAAGGTCAAGCCCAGAAAGTGATAAGTGCAGGGAGGAAAAGTGCAAGT
 561 CCATTATGTAATAGTGACAGCAAAGGGACCAGGGGAGAGGCATTGCCTTCTCTGCCCACAGTCTTTCCGTGTGATTGTCT
 641 TTGAATCTGAATCAGCCAGTCTCAGATGCCCCAAAGTTTCGGTTCCTATGAGCCCGGGGCATGATCTGATCCCCAAGACA
 721 TGTGGAGGGGCAGCCTGTGCCTGCCTTTGTGTCAGAAAAAGGAAACCACAGTGAGCCTGAGAGAGACGGCGATTTTCGGG
 801 CTGAGAAGGCAGTAGTTTTCAAAACACATAGTTAAAAAAGAAACAAATGAAAAAAATTTTAGAACAGTCCAGCAAATTGC
 881 TAGTCAGGGTGAATTGTGAAATTGGGTGAAGAGCTTAGGATTCTAATCTCATGTTTTTTCCTTTTCACATTTTTAAAAGA
 961 ACAATGACAAACACCCACTTATTTTTCAAGGTTTTAAAACAGTCTACATTGAGCATTTGAAAGGTGTGCTAGAACAAGGT
1041 CTCCTGATCCGTCCGAGGCTGCTTCCCAGAGGAGCAGCTCTCCCCAGGCATTTGCCAAGGGAGGCGGATTTCCCTGGTAG
1121 TGTAGCTGTGTGGCTTTCCTTCCTGAAGAGTCCGTGGTTGCCCTAGAACCTAACACCCCCTAGCAAAACTCACAGAGCTT
1201 TCCGTTTTTTTCTTTCCTGTAAAGAAACATTTCCTTTGAACTTGATTGCCTATGGATCAAAGAAATTCAGAACAGCCTGC
1281 CTGTCCCCCCGCACTTTTTACATATATTTGTTTCATTTCTGCAGATGGAAAGTTGACATGGGTGGGGTGTCCCCATCCAG
1361 CGAGAGAGTTTCAAAAGCAAAACATCTCTGCAGTTTTTCCCAAGTACCCTGAGATACTTCCCAAAGCCCTTATGTTTAAT
1441 CAGCGATGTATATAAGCCAGTTCACTTAGACAACTTTACCCTTCTTGTCCAATGTACAGGAAGTAGTTCTAAAAAAAATG
1521 CATATTAATTTCTTCCCCCAAAGCCGGATTCTTAATTCTCTGCAACACTTTGAGGACATTTATGATTGTCCCTCTGGGCC
1601 AATGCTTATACCCAGTGAGGATGCTGCAGTGAGGCTGTAAAGTGGCCCCCTGCGGCCCTAGCCTGACCCGGAGGAAAGGA
1681 TGGTAGATTCTGTTAACTCTTGAAGACTCCAGTATGAAAATCAGCATGCCCGCCTAGTTACCTACCGGAGAGTTATCCTG
1761 ATAAATTAACCTCTCACAGTTAGTGATCCTGTCCTTTTAACACCTTTTTTGTGGGGTTCTCTCTGACCTTTCATCGTAAA
1841 GTGCTGGGGACCTTAAGTGATTTGCCTGTAATTTTGGATGATTAAAAAATGTGTATATATATTAGCTAATTAGAAATATT
1921 CTACTTCTCTGTTGTCAAACTGAAATTCAGAGCAAGTTCCTGAGTGCGTGGATCTGGGTCTTAGTTCTGGTTGATTCACT
2001 CAAGAGTTCAGTGCTCATACGTATCTGCTCATTTTGACAAAGTGCCTCATGCAACCGGGCCCTCTCTCTGCGGCAGAGTC
2081 CTTAGTGGAGGGGTTTACCTGGAACATTAGTAGTTACCACAGAATACGGAAGAGCAGGTGACTGTGCTGTGCAGCTCTCT
2161 AAATGGGAATTCTCAGGTAGGAAGCAACAGCTTCAGAAAGAGCTCAAAATAAATTGGAAATGTGAATCGCAGCTGTGGGT
2241 TTTACCACCGTCTGTCTCAGAGTCCCAGGACCTTGAGTGTCATTAGTTACTTTATTGAAGGTTTTAGACCCATAGCAGCT
2321 TTGTCTCTGTCACATCAGCAATTTCAGAACCAAAAGGGAGGCTCTCTGTAGGCACAGAGCTGCACTATCACGAGCCTTTG
2401 TTTTTCTCCACAAAGTATCTAACAAAACCAATGTGCAGACTGATTGGCCTGGTCATTGGTCTCCGAGAGAGGAGGTTTGC
2481 CTGTGATTTCCTAATTATCGCTAGGGCCAAGGTGGGATTTGTAAAGCTTTACAATAATCATTCTGGATAGAGTCCTGGGA
2561 GGTCCTTGGCAGAACTCAGTTAAATCTTTGAAGAATATTTGTAGTTATCTTAGAAGATAGCATGGGAGGTGAGGATTCCA
2641 AAAACATTTTATTTTTAAAATATCCTGTGTAACACTTGGCTCTTGGTACCTGTGGGTTAGCATCAAGTTCTCCCCAGGGT
2721 AGAATTCAATCAGAGCTCCAGTTTGCATTTGGATGTGTAAATTACAGTAATCCCATTTCCCAAACCTAAAATCTGTTTTT
2801 CTCATCAGACTCTGAGTAACTGGTTGCTGTGTCATAACTTCATAGATGCAGGAGGCTCAGGTGATCTGTTTGAGGAGAGC
2881 ACCCTAGGCAGCCTGCAGGGAATAACATACTGGCCGTTCTGACCTGTTGCCAGCAGATACACAGGACATGGATGAAATTC
2961 CCGTTTCCTCTAGTTTCTTCCTGTAGTACTCCTCTTTTAGATCCTAAGTCTCTTACAAAAGCTTTGAATACTGTGAAAAT
3041 GTTTTACATTCCATTTCATTTGTGTTGTTTTTTTAACTGCATTTTACCAGATGTTTTGATGTTATCGCTTATGTTAATAG
3121 TAATTCCCGTACGTGTTCATTTTATTTTCATGCTTTTTCAGCCATGTATCAATATTCACTTGACTAAAATCACTCAATTA
3201 ATCAATGATAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugCAGUGACGCAAGAGAGGGGc 5'
            | ||:||| |||||| ||| 
Target 5' gaGGCATTGCCTTCTCTGCCCa 3'
 597 - 618 148.00 -22.10
2 
miRNA  3' ugcagugacgcaaGAGAGGGGc 5'
                       |||||||| 
Target 5' cccagaggagcagCTCTCCCCa 3'
 1065 - 1086 145.00 -17.20
3 
miRNA  3' ugCAGU-GACGCAAGAGAGGGGc 5'
            ||:| |  |   :||||||| 
Target 5' ggGTTAGCATCAAGTTCTCCCCa 3'
 2694 - 2716 144.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30148823 1 COSMIC
COSN30679367 8 COSMIC
COSN19662921 18 COSMIC
COSN19662920 36 COSMIC
COSN24311307 53 COSMIC
COSN31962943 64 COSMIC
COSN20254776 73 COSMIC
COSN26440516 192 COSMIC
COSN27613304 301 COSMIC
COSN24532075 339 COSMIC
COSN23173367 534 COSMIC
COSN9635116 622 COSMIC
COSN31962942 663 COSMIC
COSN32047781 995 COSMIC
COSN17791945 1004 COSMIC
COSN8084769 1034 COSMIC
COSN8084768 1190 COSMIC
COSN27299653 1321 COSMIC
COSN27296747 1322 COSMIC
COSN31962941 1372 COSMIC
COSN32056203 1445 COSMIC
COSN22111838 1511 COSMIC
COSN29217918 1547 COSMIC
COSN16525628 1731 COSMIC
COSN9635115 1746 COSMIC
COSN32115291 1763 COSMIC
COSN6695769 1803 COSMIC
COSN27472574 1804 COSMIC
COSN31514221 1819 COSMIC
COSN15252114 1865 COSMIC
COSN30000339 1882 COSMIC
COSN15804137 1904 COSMIC
COSN31962940 1956 COSMIC
COSN31513515 2020 COSMIC
COSN29467578 2038 COSMIC
COSN14886396 2057 COSMIC
COSN23594598 2214 COSMIC
COSN25881538 2250 COSMIC
COSN29206046 2958 COSMIC
COSN31534807 2974 COSMIC
COSN29463504 3004 COSMIC
COSN17420782 3128 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1433074695 3 dbSNP
rs906037459 6 dbSNP
rs1250599025 7 dbSNP
rs762403153 7 dbSNP
rs1040710862 8 dbSNP
rs1375970360 9 dbSNP
rs1314596360 12 dbSNP
rs1432819188 13 dbSNP
rs1393887387 14 dbSNP
rs1168010448 15 dbSNP
rs1476184893 16 dbSNP
rs374352708 17 dbSNP
rs1192886124 18 dbSNP
rs577360177 19 dbSNP
rs1443401405 20 dbSNP
rs1260074746 23 dbSNP
rs1458279824 24 dbSNP
rs1414854517 27 dbSNP
rs1186341242 28 dbSNP
rs1421572774 29 dbSNP
rs1254801523 30 dbSNP
rs1427017845 31 dbSNP
rs746639276 32 dbSNP
rs372271949 33 dbSNP
rs768438131 33 dbSNP
rs911107386 35 dbSNP
rs775176870 36 dbSNP
rs1266082161 37 dbSNP
rs1485633358 38 dbSNP
rs1413557770 41 dbSNP
rs771720934 41 dbSNP
rs1216461438 42 dbSNP
rs115846935 45 dbSNP
rs778794577 47 dbSNP
rs370353880 48 dbSNP
rs749037887 48 dbSNP
rs749288754 50 dbSNP
rs1270797145 53 dbSNP
rs1186108691 55 dbSNP
rs1484996098 55 dbSNP
rs943709536 57 dbSNP
rs912291189 61 dbSNP
rs1352571037 64 dbSNP
rs1172167037 70 dbSNP
rs980097227 72 dbSNP
rs985628386 73 dbSNP
rs1360350251 74 dbSNP
rs970469812 75 dbSNP
rs1451026924 81 dbSNP
rs1016476524 87 dbSNP
rs555386682 88 dbSNP
rs189793665 90 dbSNP
rs1316977007 91 dbSNP
rs146667802 95 dbSNP
rs979342881 96 dbSNP
rs1223439264 102 dbSNP
rs143114274 111 dbSNP
rs1215173631 113 dbSNP
rs1305361129 116 dbSNP
rs1261463709 120 dbSNP
rs776439552 121 dbSNP
rs1020888905 124 dbSNP
rs767928939 126 dbSNP
rs1405887484 127 dbSNP
rs534277497 132 dbSNP
rs571777661 136 dbSNP
rs1193380319 138 dbSNP
rs1406447622 139 dbSNP
rs960331042 148 dbSNP
rs942342912 149 dbSNP
rs541056477 153 dbSNP
rs1002053680 155 dbSNP
rs75734199 160 dbSNP
rs1458531733 161 dbSNP
rs1455465818 164 dbSNP
rs889488941 167 dbSNP
rs1042972058 170 dbSNP
rs537869206 171 dbSNP
rs1479428173 177 dbSNP
rs759853980 179 dbSNP
rs1307859090 181 dbSNP
rs1331448922 189 dbSNP
rs774876749 191 dbSNP
rs1272813436 194 dbSNP
rs569269633 197 dbSNP
rs897373175 198 dbSNP
rs980595754 199 dbSNP
rs1176097720 238 dbSNP
rs1259299291 240 dbSNP
rs549390249 241 dbSNP
rs73621091 242 dbSNP
rs577301038 245 dbSNP
rs1016709954 246 dbSNP
rs985044851 255 dbSNP
rs912244778 261 dbSNP
rs1254921006 263 dbSNP
rs1352675480 265 dbSNP
rs1441441405 266 dbSNP
rs1049474792 267 dbSNP
rs1201182348 276 dbSNP
rs112229963 291 dbSNP
rs1322075074 299 dbSNP
rs151004283 303 dbSNP
rs111439067 304 dbSNP
rs546802453 318 dbSNP
rs1292834447 326 dbSNP
rs1335817988 333 dbSNP
rs997652862 334 dbSNP
rs1326197931 339 dbSNP
rs532818219 341 dbSNP
rs563858383 345 dbSNP
rs902015715 360 dbSNP
rs543769256 363 dbSNP
rs1205782791 368 dbSNP
rs1384138228 370 dbSNP
rs979223258 371 dbSNP
rs1336196069 373 dbSNP
rs1468267252 379 dbSNP
rs1483716540 381 dbSNP
rs1408269581 385 dbSNP
rs1185164126 387 dbSNP
rs558549256 392 dbSNP
rs1472954863 393 dbSNP
rs1164751544 394 dbSNP
rs966533871 403 dbSNP
rs1157805061 404 dbSNP
rs889445557 411 dbSNP
rs1169079857 412 dbSNP
rs1372339496 414 dbSNP
rs913794861 418 dbSNP
rs1413010403 422 dbSNP
rs13635 427 dbSNP
rs139525527 437 dbSNP
rs1036124065 438 dbSNP
rs150948477 440 dbSNP
rs1215532827 441 dbSNP
rs1242103256 450 dbSNP
rs1277307979 462 dbSNP
rs928508733 469 dbSNP
rs573131926 478 dbSNP
rs1442527869 494 dbSNP
rs970581248 499 dbSNP
rs570946563 502 dbSNP
rs769991351 503 dbSNP
rs1240018338 504 dbSNP
rs1474922523 509 dbSNP
rs1189053326 522 dbSNP
rs1027029435 534 dbSNP
rs1432844330 540 dbSNP
rs995609882 549 dbSNP
rs1173056595 553 dbSNP
rs948843384 557 dbSNP
rs1416260899 562 dbSNP
rs909320146 568 dbSNP
rs1326077718 585 dbSNP
rs1462254105 587 dbSNP
rs1436269717 590 dbSNP
rs1300336701 593 dbSNP
rs985170193 600 dbSNP
rs1369399648 614 dbSNP
rs1234151397 621 dbSNP
rs897343905 627 dbSNP
rs181272180 628 dbSNP
rs187981594 629 dbSNP
rs950705035 632 dbSNP
rs1201680772 634 dbSNP
rs183756202 637 dbSNP
rs1339226026 641 dbSNP
rs538364693 645 dbSNP
rs760891107 646 dbSNP
rs1230019236 659 dbSNP
rs538228643 660 dbSNP
rs1049897580 664 dbSNP
rs1452372267 670 dbSNP
rs1314601594 672 dbSNP
rs569154936 680 dbSNP
rs748309660 681 dbSNP
rs1337391493 686 dbSNP
rs1409310549 693 dbSNP
rs781395955 694 dbSNP
rs754762386 695 dbSNP
rs1006623043 696 dbSNP
rs1169462788 704 dbSNP
rs1392676836 707 dbSNP
rs1440645936 709 dbSNP
rs945160752 716 dbSNP
rs1302507284 717 dbSNP
rs1333402004 722 dbSNP
rs746801486 724 dbSNP
rs1462279681 735 dbSNP
rs913763911 737 dbSNP
rs1208927018 745 dbSNP
rs1384280376 747 dbSNP
rs992057058 748 dbSNP
rs1181358575 753 dbSNP
rs1269647321 761 dbSNP
rs1466923427 766 dbSNP
rs1011161867 767 dbSNP
rs1446003165 769 dbSNP
rs960945682 773 dbSNP
rs552783123 777 dbSNP
rs754541302 782 dbSNP
rs142634259 787 dbSNP
rs980471508 788 dbSNP
rs970102611 790 dbSNP
rs148449485 791 dbSNP
rs974157549 794 dbSNP
rs961508987 798 dbSNP
rs1415964736 803 dbSNP
rs1015755398 809 dbSNP
rs1002776613 815 dbSNP
rs1008474179 817 dbSNP
rs907029612 818 dbSNP
rs1390212003 821 dbSNP
rs192472743 828 dbSNP
rs1349278352 840 dbSNP
rs1228482093 848 dbSNP
rs1244057191 855 dbSNP
rs1361781503 856 dbSNP
rs1332306513 857 dbSNP
rs948597243 857 dbSNP
rs909255744 862 dbSNP
rs1441520920 866 dbSNP
rs147443130 873 dbSNP
rs533363232 882 dbSNP
rs1391816009 885 dbSNP
rs1255557760 890 dbSNP
rs1184522847 895 dbSNP
rs919293164 902 dbSNP
rs1475033043 910 dbSNP
rs10088390 918 dbSNP
rs142904712 925 dbSNP
rs867283085 926 dbSNP
rs910823034 928 dbSNP
rs1167778496 929 dbSNP
rs1043481656 933 dbSNP
rs1409897174 938 dbSNP
rs986675091 940 dbSNP
rs1157525033 942 dbSNP
rs1353154515 948 dbSNP
rs1395132461 958 dbSNP
rs1468135439 961 dbSNP
rs968251642 964 dbSNP
rs1224976399 965 dbSNP
rs945129704 965 dbSNP
rs1362623161 972 dbSNP
rs1273822769 987 dbSNP
rs1342858101 989 dbSNP
rs17551514 1000 dbSNP
rs140562575 1002 dbSNP
rs541817068 1008 dbSNP
rs1483627678 1009 dbSNP
rs1482987120 1017 dbSNP
rs939206795 1021 dbSNP
rs11555201 1025 dbSNP
rs756835089 1026 dbSNP
rs1193000449 1029 dbSNP
rs58802404 1031 dbSNP
rs568598707 1050 dbSNP
rs919949211 1051 dbSNP
rs974123681 1052 dbSNP
rs1373054858 1054 dbSNP
rs546153826 1055 dbSNP
rs961473254 1059 dbSNP
rs1002725557 1062 dbSNP
rs1290826625 1065 dbSNP
rs548408491 1066 dbSNP
rs1380300455 1072 dbSNP
rs1015637373 1073 dbSNP
rs1365802528 1077 dbSNP
rs1348616191 1094 dbSNP
rs1230474439 1097 dbSNP
rs190487454 1105 dbSNP
rs1281281685 1114 dbSNP
rs565016302 1134 dbSNP
rs1344735584 1142 dbSNP
rs1013126566 1145 dbSNP
rs1028966127 1149 dbSNP
rs997137743 1153 dbSNP
rs1485047442 1154 dbSNP
rs887658928 1167 dbSNP
rs1365861222 1169 dbSNP
rs185221501 1172 dbSNP
rs1192250952 1176 dbSNP
rs1317178292 1179 dbSNP
rs1022009849 1181 dbSNP
rs1049167606 1182 dbSNP
rs1398515379 1183 dbSNP
rs1409532439 1184 dbSNP
rs544373806 1203 dbSNP
rs897811495 1204 dbSNP
rs892185838 1205 dbSNP
rs1301070203 1212 dbSNP
rs1366902270 1212 dbSNP
rs944702145 1212 dbSNP
rs1429157111 1219 dbSNP
rs1056235516 1221 dbSNP
rs530423805 1228 dbSNP
rs1315317626 1233 dbSNP
rs575705226 1234 dbSNP
rs1269033101 1242 dbSNP
rs1466484149 1249 dbSNP
rs1212284406 1252 dbSNP
rs905053648 1261 dbSNP
rs1045366520 1267 dbSNP
rs531861200 1273 dbSNP
rs1489122526 1281 dbSNP
rs1191239432 1285 dbSNP
rs1426614942 1286 dbSNP
rs986400963 1287 dbSNP
rs919917576 1290 dbSNP
rs1412266975 1291 dbSNP
rs1215328960 1292 dbSNP
rs61388053 1294 dbSNP
rs763680000 1302 dbSNP
rs1437153991 1305 dbSNP
rs908612091 1324 dbSNP
rs562826738 1329 dbSNP
rs192834201 1331 dbSNP
rs147251468 1353 dbSNP
rs976069386 1361 dbSNP
rs968325011 1362 dbSNP
rs1023304024 1367 dbSNP
rs1345906090 1369 dbSNP
rs1289664930 1379 dbSNP
rs73621087 1384 dbSNP
rs1127379 1406 dbSNP
rs1346545389 1410 dbSNP
rs1481745981 1411 dbSNP
rs371327289 1414 dbSNP
rs1180916237 1424 dbSNP
rs1252078386 1427 dbSNP
rs774619782 1444 dbSNP
rs149553664 1445 dbSNP
rs543483036 1447 dbSNP
rs1035169560 1448 dbSNP
rs1412753424 1456 dbSNP
rs1405765012 1467 dbSNP
rs1166760223 1480 dbSNP
rs1003317133 1483 dbSNP
rs35860591 1484 dbSNP
rs993350469 1490 dbSNP
rs1308765215 1491 dbSNP
rs766904920 1494 dbSNP
rs536707196 1500 dbSNP
rs1413117865 1506 dbSNP
rs576241999 1509 dbSNP
rs1380270772 1519 dbSNP
rs897883038 1519 dbSNP
rs1044938143 1522 dbSNP
rs994635383 1537 dbSNP
rs1406062260 1538 dbSNP
rs1040488757 1541 dbSNP
rs944665153 1542 dbSNP
rs568149253 1545 dbSNP
rs547847272 1546 dbSNP
rs1036253424 1558 dbSNP
rs939998866 1571 dbSNP
rs908571495 1578 dbSNP
rs1051599861 1582 dbSNP
rs915375306 1589 dbSNP
rs1183450309 1592 dbSNP
rs1388224234 1595 dbSNP
rs934131954 1602 dbSNP
rs921426205 1606 dbSNP
rs1429074413 1610 dbSNP
rs988243684 1614 dbSNP
rs528078506 1615 dbSNP
rs1372429271 1621 dbSNP
rs935511746 1627 dbSNP
rs1333675171 1633 dbSNP
rs1354800240 1642 dbSNP
rs188743959 1645 dbSNP
rs79487693 1648 dbSNP
rs560467022 1653 dbSNP
rs746738008 1654 dbSNP
rs61412814 1659 dbSNP
rs1198238139 1661 dbSNP
rs1034729965 1668 dbSNP
rs1261250449 1669 dbSNP
rs1245919099 1670 dbSNP
rs375857546 1673 dbSNP
rs543608606 1685 dbSNP
rs1189068322 1695 dbSNP
rs1312640867 1697 dbSNP
rs969129160 1706 dbSNP
rs575623122 1707 dbSNP
rs1272047077 1710 dbSNP
rs1172120333 1713 dbSNP
rs1212544098 1714 dbSNP
rs1363692903 1716 dbSNP
rs1318825148 1722 dbSNP
rs951974899 1726 dbSNP
rs1027587817 1731 dbSNP
rs768806544 1732 dbSNP
rs1379940637 1741 dbSNP
rs1338050643 1742 dbSNP
rs1471251622 1746 dbSNP
rs1019037024 1747 dbSNP
rs1220545157 1751 dbSNP
rs1265861394 1756 dbSNP
rs1360201975 1771 dbSNP
rs1464216520 1778 dbSNP
rs1209193221 1784 dbSNP
rs1249797769 1797 dbSNP
rs994604115 1798 dbSNP
rs1408550483 1799 dbSNP
rs1421991284 1809 dbSNP
rs1230006187 1811 dbSNP
rs376585636 1811 dbSNP
rs1169461095 1812 dbSNP
rs1157145061 1819 dbSNP
rs1411515650 1821 dbSNP
rs562229159 1833 dbSNP
rs1389165121 1835 dbSNP
rs758314466 1836 dbSNP
rs1036225802 1870 dbSNP
rs746784141 1877 dbSNP
rs182500245 1878 dbSNP
rs559919181 1895 dbSNP
rs887106464 1901 dbSNP
rs1406246716 1903 dbSNP
rs1286062319 1907 dbSNP
rs894029127 1909 dbSNP
rs117452764 1911 dbSNP
rs552994193 1919 dbSNP
rs928172752 1923 dbSNP
rs758339899 1939 dbSNP
rs1209118553 1943 dbSNP
rs1045878718 1948 dbSNP
rs745736208 1962 dbSNP
rs1232199469 1966 dbSNP
rs899875432 1967 dbSNP
rs574694670 1968 dbSNP
rs1473069785 1972 dbSNP
rs1367036542 1987 dbSNP
rs991142902 1990 dbSNP
rs1393596135 1991 dbSNP
rs1425985096 1997 dbSNP
rs138239039 2001 dbSNP
rs972014578 2003 dbSNP
rs1347923956 2004 dbSNP
rs375614708 2004 dbSNP
rs961865223 2010 dbSNP
rs557225206 2016 dbSNP
rs1274992971 2017 dbSNP
rs753451274 2018 dbSNP
rs537673408 2020 dbSNP
rs116572998 2021 dbSNP
rs556258329 2025 dbSNP
rs762647617 2028 dbSNP
rs1297451686 2033 dbSNP
rs1254340200 2038 dbSNP
rs191820762 2040 dbSNP
rs981759584 2049 dbSNP
rs953463077 2050 dbSNP
rs534757306 2054 dbSNP
rs1362146588 2055 dbSNP
rs1448242935 2056 dbSNP
rs1380581261 2057 dbSNP
rs1029503317 2060 dbSNP
rs1010869852 2061 dbSNP
rs893849804 2063 dbSNP
rs1299461274 2067 dbSNP
rs1399701851 2070 dbSNP
rs969476251 2071 dbSNP
rs1313224103 2073 dbSNP
rs1440547959 2082 dbSNP
rs1023353489 2085 dbSNP
rs973158642 2093 dbSNP
rs1342874005 2094 dbSNP
rs565671210 2096 dbSNP
rs1254468665 2102 dbSNP
rs753401641 2104 dbSNP
rs963165588 2107 dbSNP
rs915630161 2109 dbSNP
rs1165589542 2113 dbSNP
rs79892697 2127 dbSNP
rs930292750 2128 dbSNP
rs1004751008 2129 dbSNP
rs1391334112 2136 dbSNP
rs971959207 2149 dbSNP
rs1171977979 2153 dbSNP
rs1375549741 2160 dbSNP
rs1465270128 2161 dbSNP
rs961976915 2169 dbSNP
rs890346244 2177 dbSNP
rs1030666951 2184 dbSNP
rs987291209 2185 dbSNP
rs953338314 2186 dbSNP
rs1029077872 2188 dbSNP
rs990007199 2190 dbSNP
rs1299328374 2195 dbSNP
rs958020753 2213 dbSNP
rs1234178851 2217 dbSNP
rs1265251676 2220 dbSNP
rs1463775147 2222 dbSNP
rs1208571442 2228 dbSNP
rs1252292304 2233 dbSNP
rs1030985462 2235 dbSNP
rs999500535 2245 dbSNP
rs906766291 2248 dbSNP
rs141548335 2249 dbSNP
rs111933699 2250 dbSNP
rs1176250365 2256 dbSNP
rs895342583 2256 dbSNP
rs1039791809 2262 dbSNP
rs1455431281 2270 dbSNP
rs1158207582 2274 dbSNP
rs946821928 2280 dbSNP
rs549678079 2282 dbSNP
rs898811965 2285 dbSNP
rs1291741935 2290 dbSNP
rs1366931986 2295 dbSNP
rs1052570067 2306 dbSNP
rs1309048613 2310 dbSNP
rs940350562 2312 dbSNP
rs1327415673 2320 dbSNP
rs529881319 2325 dbSNP
rs928212396 2341 dbSNP
rs751942496 2351 dbSNP
rs1319139760 2357 dbSNP
rs1802320 2358 dbSNP
rs947735692 2364 dbSNP
rs1265374447 2368 dbSNP
rs916274022 2368 dbSNP
rs1487869666 2372 dbSNP
rs911777544 2375 dbSNP
rs766595673 2379 dbSNP
rs987835578 2382 dbSNP
rs1802319 2386 dbSNP
rs973126055 2387 dbSNP
rs567021752 2391 dbSNP
rs921791769 2392 dbSNP
rs76655725 2394 dbSNP
rs1458464835 2400 dbSNP
rs1305088293 2405 dbSNP
rs1420831592 2406 dbSNP
rs983266732 2417 dbSNP
rs954721253 2419 dbSNP
rs1289245415 2424 dbSNP
rs1412574982 2427 dbSNP
rs1198472716 2431 dbSNP
rs958092656 2434 dbSNP
rs750888331 2438 dbSNP
rs1270680977 2442 dbSNP
rs377618560 2445 dbSNP
rs1222538602 2447 dbSNP
rs1031058130 2453 dbSNP
rs978030998 2455 dbSNP
rs1203929654 2456 dbSNP
rs73621086 2462 dbSNP
rs186761144 2464 dbSNP
rs544053045 2465 dbSNP
rs1412951364 2466 dbSNP
rs1445209365 2468 dbSNP
rs1018320125 2470 dbSNP
rs761857867 2472 dbSNP
rs1331889675 2482 dbSNP
rs1308857114 2483 dbSNP
rs1289494445 2491 dbSNP
rs1356555537 2499 dbSNP
rs545795177 2500 dbSNP
rs1027588677 2508 dbSNP
rs1440766560 2509 dbSNP
rs1344026154 2518 dbSNP
rs1248741192 2526 dbSNP
rs1303779891 2531 dbSNP
rs893854528 2533 dbSNP
rs12914 2534 dbSNP
rs898885441 2536 dbSNP
rs1036119939 2537 dbSNP
rs557648333 2539 dbSNP
rs1273258889 2546 dbSNP
rs1287221651 2548 dbSNP
rs138959512 2554 dbSNP
rs1051676772 2557 dbSNP
rs931918013 2568 dbSNP
rs1046626680 2583 dbSNP
rs1185285272 2585 dbSNP
rs1388319600 2591 dbSNP
rs1448924465 2599 dbSNP
rs1389352718 2603 dbSNP
rs1175611768 2628 dbSNP
rs921890544 2641 dbSNP
rs1412939954 2645 dbSNP
rs1468104845 2650 dbSNP
rs948346043 2652 dbSNP
rs1454924921 2663 dbSNP
rs1379167578 2664 dbSNP
rs1319128535 2665 dbSNP
rs936517590 2667 dbSNP
rs1427584544 2675 dbSNP
rs1317973703 2683 dbSNP
rs923989568 2686 dbSNP
rs554699195 2705 dbSNP
rs1340902505 2715 dbSNP
rs978185021 2720 dbSNP
rs554904786 2729 dbSNP
rs1205391011 2731 dbSNP
rs941703332 2744 dbSNP
rs534665294 2747 dbSNP
rs1193845767 2750 dbSNP
rs959864889 2752 dbSNP
rs1243864878 2753 dbSNP
rs145086322 2755 dbSNP
rs1464944319 2760 dbSNP
rs1269399877 2762 dbSNP
rs1203592526 2772 dbSNP
rs1172140492 2779 dbSNP
rs1430329855 2781 dbSNP
rs1027251646 2790 dbSNP
rs1157473599 2791 dbSNP
rs1388512877 2801 dbSNP
rs1383229210 2803 dbSNP
rs995638840 2806 dbSNP
rs1327620717 2822 dbSNP
rs1433683511 2823 dbSNP
rs1282225801 2827 dbSNP
rs1345804991 2831 dbSNP
rs767852789 2832 dbSNP
rs879825354 2834 dbSNP
rs954549797 2842 dbSNP
rs565785539 2843 dbSNP
rs961538945 2855 dbSNP
rs775791204 2866 dbSNP
rs1449936532 2871 dbSNP
rs1198323039 2878 dbSNP
rs1269846647 2882 dbSNP
rs1326114062 2897 dbSNP
rs1293677100 2898 dbSNP
rs879747552 2899 dbSNP
rs1014675812 2902 dbSNP
rs1411628648 2908 dbSNP
rs974679317 2910 dbSNP
rs1389279587 2915 dbSNP
rs958463528 2916 dbSNP
rs558561861 2927 dbSNP
rs769284412 2938 dbSNP
rs890111674 2940 dbSNP
rs1051845127 2941 dbSNP
rs1334880368 2942 dbSNP
rs1021552567 2943 dbSNP
rs1010886592 2948 dbSNP
rs558218061 2951 dbSNP
rs538655377 2952 dbSNP
rs11555202 2962 dbSNP
rs550025520 2963 dbSNP
rs1490867440 2977 dbSNP
rs759958588 2986 dbSNP
rs778976903 2987 dbSNP
rs1170092885 2999 dbSNP
rs529989118 3005 dbSNP
rs1449629630 3014 dbSNP
rs771035764 3019 dbSNP
rs1367202287 3025 dbSNP
rs1242007418 3028 dbSNP
rs748803260 3030 dbSNP
rs141428967 3033 dbSNP
rs547196200 3038 dbSNP
rs936507633 3047 dbSNP
rs923808834 3049 dbSNP
rs906702220 3051 dbSNP
rs199498177 3056 dbSNP
rs1042439053 3063 dbSNP
rs1305788754 3064 dbSNP
rs1395396506 3074 dbSNP
rs1258833968 3075 dbSNP
rs1047036040 3076 dbSNP
rs1330694406 3081 dbSNP
rs1012426404 3088 dbSNP
rs777207351 3095 dbSNP
rs755665348 3101 dbSNP
rs1037936990 3105 dbSNP
rs1245096113 3106 dbSNP
rs941672160 3107 dbSNP
rs1226365057 3112 dbSNP
rs1249908119 3116 dbSNP
rs1230901749 3117 dbSNP
rs991197615 3125 dbSNP
rs1197808547 3127 dbSNP
rs528518239 3128 dbSNP
rs1314497073 3129 dbSNP
rs3242 3132 dbSNP
rs1445904553 3153 dbSNP
rs770818213 3163 dbSNP
rs1372115522 3166 dbSNP
rs1462145298 3171 dbSNP
rs974357536 3172 dbSNP
rs1399721710 3175 dbSNP
rs1451654792 3179 dbSNP
rs1337308012 3184 dbSNP
rs4736958 3189 dbSNP
rs974942259 3197 dbSNP
rs1294893445 3202 dbSNP
rs1308176045 3203 dbSNP
rs964555978 3205 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ugcagugacgcaaGAGAGGGGc 5'
                       :||||||| 
Target 5' --------ucaagUUCUCCCCa 3'
 		1 - 14
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_003012 | 3UTR | AUUGAGCAUUUGAAAGGUGUGCUAGAACAAGGUCUCCUGAUCCGUCCGAGGCUGCUUCCCAGAGGAGCAGCUCUCCCCAGGCAUUUGCCAAGGGAGGCGGAUUUCCCUGGUAGUGUAGCUGUGUGGCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000220772.3 | 3UTR | UCAAGUUCUCCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
208 hsa-miR-3175 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT118211 KHSRP KH-type splicing regulatory protein 2 2
MIRT131222 ATG2A autophagy related 2A 2 2
MIRT143733 CCL22 C-C motif chemokine ligand 22 2 2
MIRT151435 ZBTB7A zinc finger and BTB domain containing 7A 2 4
MIRT191759 ZNF410 zinc finger protein 410 2 2
MIRT267302 TMEM109 transmembrane protein 109 2 2
MIRT273435 DAZAP2 DAZ associated protein 2 2 4
MIRT286061 HIC1 HIC ZBTB transcriptional repressor 1 2 2
MIRT288597 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT316768 FOXC1 forkhead box C1 2 4
MIRT331065 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT398528 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT443842 RGS6 regulator of G protein signaling 6 2 2
MIRT446200 GTPBP4 GTP binding protein 4 2 2
MIRT448039 SFRP1 secreted frizzled related protein 1 2 2
MIRT451946 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT453239 FTSJ3 FtsJ RNA methyltransferase homolog 3 2 2
MIRT453501 ARRB1 arrestin beta 1 2 2
MIRT453541 PRR12 proline rich 12 2 2
MIRT453953 ENTHD1 ENTH domain containing 1 2 2
MIRT454209 HLA-A major histocompatibility complex, class I, A 2 2
MIRT455501 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT455620 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 10
MIRT455631 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 10
MIRT456074 AFF2 AF4/FMR2 family member 2 2 6
MIRT456149 TTF2 transcription termination factor 2 2 2
MIRT456309 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 2 2
MIRT456444 TMEM81 transmembrane protein 81 2 2
MIRT456685 LDB1 LIM domain binding 1 2 2
MIRT457516 ZMAT5 zinc finger matrin-type 5 2 2
MIRT457599 IDS iduronate 2-sulfatase 2 2
MIRT457949 ABCC5 ATP binding cassette subfamily C member 5 2 6
MIRT458593 KCTD2 potassium channel tetramerization domain containing 2 2 2
MIRT459505 TACR3 tachykinin receptor 3 2 2
MIRT459687 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT459914 HHIP hedgehog interacting protein 2 11
MIRT460610 FEM1A fem-1 homolog A 2 2
MIRT460646 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT461454 SLC19A3 solute carrier family 19 member 3 2 2
MIRT461909 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462059 CCDC77 coiled-coil domain containing 77 2 4
MIRT462404 RBM28 RNA binding motif protein 28 2 2
MIRT462589 MYL12A myosin light chain 12A 2 2
MIRT462770 ZNF8 zinc finger protein 8 2 2
MIRT462991 ZNF740 zinc finger protein 740 2 2
MIRT463680 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT464112 VPS35 VPS35, retromer complex component 2 2
MIRT464414 UNC13A unc-13 homolog A 2 6
MIRT464608 UBE4B ubiquitination factor E4B 2 2
MIRT465679 TNPO2 transportin 2 2 2
MIRT467225 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT469316 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469604 RALGAPA2 Ral GTPase activating protein catalytic alpha subunit 2 2 2
MIRT469655 RAC1 Rac family small GTPase 1 2 2
MIRT469744 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT469947 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT470140 PSME3 proteasome activator subunit 3 2 2
MIRT473142 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT473287 MFRP membrane frizzled-related protein 2 2
MIRT473379 MBD4 methyl-CpG binding domain 4, DNA glycosylase 2 6
MIRT473661 MARCKSL1 MARCKS like 1 2 2
MIRT475256 IGF1R insulin like growth factor 1 receptor 2 2
MIRT475361 ICOSLG inducible T-cell costimulator ligand 2 4
MIRT475662 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT476524 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT476572 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT477624 EFNA1 ephrin A1 2 2
MIRT478125 DIRAS1 DIRAS family GTPase 1 2 2
MIRT479971 CARD10 caspase recruitment domain family member 10 2 2
MIRT480144 CALR calreticulin 2 2
MIRT480349 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480402 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480741 BNC2 basonuclin 2 2 8
MIRT481987 AMOTL2 angiomotin like 2 2 2
MIRT482650 FAM195B MAPK regulated corepressor interacting protein 1 2 4
MIRT482809 TRAF6 TNF receptor associated factor 6 2 2
MIRT482945 ZNF561 zinc finger protein 561 2 6
MIRT482987 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT483123 ONECUT3 one cut homeobox 3 2 4
MIRT483253 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 2 4
MIRT483580 SLC26A9 solute carrier family 26 member 9 2 2
MIRT483704 ASPH aspartate beta-hydroxylase 2 2
MIRT483932 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484140 LRRC45 leucine rich repeat containing 45 2 4
MIRT484195 SUMO1 small ubiquitin-like modifier 1 2 4
MIRT484353 GATA6 GATA binding protein 6 2 12
MIRT484472 DDX6 DEAD-box helicase 6 2 2
MIRT484544 BARHL1 BarH like homeobox 1 2 6
MIRT484572 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT485265 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT485376 MSN moesin 2 4
MIRT485763 B4GALT5 beta-1,4-galactosyltransferase 5 2 2
MIRT485882 AGO2 argonaute 2, RISC catalytic component 2 17
MIRT486242 FASTK Fas activated serine/threonine kinase 2 2
MIRT486431 NDUFA5 NADH:ubiquinone oxidoreductase subunit A5 2 2
MIRT486569 ZNF619 zinc finger protein 619 2 2
MIRT486608 METTL6 methyltransferase like 6 2 2
MIRT487442 TFAP2B transcription factor AP-2 beta 2 4
MIRT487577 FAM83H family with sequence similarity 83 member H 2 4
MIRT487812 PER3 period circadian clock 3 2 2
MIRT487944 ISCA1 iron-sulfur cluster assembly 1 2 2
MIRT487952 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT488011 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT488311 LDOC1 LDOC1, regulator of NFKB signaling 2 2
MIRT488639 HAND2 heart and neural crest derivatives expressed 2 2 2
MIRT488651 ELAVL3 ELAV like RNA binding protein 3 2 2
MIRT488683 NAT9 N-acetyltransferase 9 (putative) 2 2
MIRT488846 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT488970 REXO2 RNA exonuclease 2 2 2
MIRT489002 FBXO40 F-box protein 40 2 2
MIRT489038 PRPF4B pre-mRNA processing factor 4B 2 2
MIRT489167 ANKRD45 ankyrin repeat domain 45 2 2
MIRT489221 ASCL2 achaete-scute family bHLH transcription factor 2 2 4
MIRT489356 SYNGR1 synaptogyrin 1 2 4
MIRT489373 RAB11B RAB11B, member RAS oncogene family 2 6
MIRT489526 MRE11A MRE11 homolog, double strand break repair nuclease 2 14
MIRT490071 PRRT2 proline rich transmembrane protein 2 2 2
MIRT490275 ZNF562 zinc finger protein 562 2 4
MIRT490696 FSTL4 follistatin like 4 2 2
MIRT490778 PSMD3 proteasome 26S subunit, non-ATPase 3 2 2
MIRT490854 UPK2 uroplakin 2 2 2
MIRT491048 CHST12 carbohydrate sulfotransferase 12 2 2
MIRT491123 PTPRE protein tyrosine phosphatase, receptor type E 2 2
MIRT491161 LRP3 LDL receptor related protein 3 2 2
MIRT491506 CREBL2 cAMP responsive element binding protein like 2 2 2
MIRT491532 HDAC5 histone deacetylase 5 2 2
MIRT491699 PDZD4 PDZ domain containing 4 2 2
MIRT491949 VPS52 VPS52, GARP complex subunit 2 2
MIRT492226 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492278 SHISA6 shisa family member 6 2 4
MIRT492472 RASD1 ras related dexamethasone induced 1 2 4
MIRT492480 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT492498 RANBP10 RAN binding protein 10 2 4
MIRT492565 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT492702 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT492916 NFAT5 nuclear factor of activated T-cells 5 2 2
MIRT493020 NACC1 nucleus accumbens associated 1 2 2
MIRT493218 MEX3A mex-3 RNA binding family member A 2 2
MIRT493313 LIMD2 LIM domain containing 2 2 2
MIRT493410 KDM6B lysine demethylase 6B 2 2
MIRT493451 ITFG3 family with sequence similarity 234 member A 2 2
MIRT494028 DUSP7 dual specificity phosphatase 7 2 4
MIRT494329 CASKIN1 CASK interacting protein 1 2 2
MIRT496564 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT496771 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 2 2
MIRT496973 RPS6KA2 ribosomal protein S6 kinase A2 2 2
MIRT497038 DYRK1B dual specificity tyrosine phosphorylation regulated kinase 1B 2 2
MIRT498913 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT499006 CCDC50 coiled-coil domain containing 50 2 2
MIRT499637 CREB3L2 cAMP responsive element binding protein 3 like 2 2 2
MIRT501700 PCGF3 polycomb group ring finger 3 2 6
MIRT502230 HOXC6 homeobox C6 2 2
MIRT502655 CTC1 CST telomere replication complex component 1 2 13
MIRT506246 PER1 period circadian clock 1 2 8
MIRT506430 NAGK N-acetylglucosamine kinase 2 6
MIRT507336 FAM168A family with sequence similarity 168 member A 2 2
MIRT507781 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT510062 C12orf49 chromosome 12 open reading frame 49 2 4
MIRT511935 FAM127B retrotransposon Gag like 8A 2 2
MIRT513037 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT513518 YIPF4 Yip1 domain family member 4 2 6
MIRT522612 MAP7D1 MAP7 domain containing 1 2 4
MIRT527162 ADRA2B adrenoceptor alpha 2B 2 2
MIRT535350 PFN1 profilin 1 2 2
MIRT536734 IER5 immediate early response 5 2 4
MIRT538505 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT544643 PHF8 PHD finger protein 8 2 4
MIRT544856 MYH2 myosin heavy chain 2 2 4
MIRT568898 ATP6V1B1 ATPase H+ transporting V1 subunit B1 2 2
MIRT568949 RUNX3 runt related transcription factor 3 2 2
MIRT568971 CACNA1C calcium voltage-gated channel subunit alpha1 C 2 2
MIRT569037 IL21R interleukin 21 receptor 2 2
MIRT569310 CC2D1B coiled-coil and C2 domain containing 1B 2 2
MIRT569721 GPR173 G protein-coupled receptor 173 2 2
MIRT569765 SAMD14 sterile alpha motif domain containing 14 2 2
MIRT569857 KRT80 keratin 80 2 2
MIRT569867 KLK10 kallikrein related peptidase 10 2 2
MIRT569914 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570060 CPNE2 copine 2 2 2
MIRT570307 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT570982 RGS19 regulator of G protein signaling 19 2 2
MIRT571025 CLSTN1 calsyntenin 1 2 2
MIRT573215 NAT10 N-acetyltransferase 10 2 2
MIRT574633 LPCAT3 lysophosphatidylcholine acyltransferase 3 2 2
MIRT574690 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT575732 Hhip Hedgehog-interacting protein 2 7
MIRT575837 Ago2 argonaute RISC catalytic subunit 2 2 10
MIRT631303 CBS cystathionine-beta-synthase 2 2
MIRT647750 SAMD9L sterile alpha motif domain containing 9 like 2 2
MIRT648323 PLIN1 perilipin 1 2 2
MIRT649339 HEXA hexosaminidase subunit alpha 2 2
MIRT649994 MSI1 musashi RNA binding protein 1 2 2
MIRT661786 NLRC3 NLR family CARD domain containing 3 2 2
MIRT665992 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT667177 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667386 MOB1B MOB kinase activator 1B 2 2
MIRT680929 EVC EvC ciliary complex subunit 1 2 2
MIRT691870 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT693258 HBS1L HBS1 like translational GTPase 2 2
MIRT693490 MOB3A MOB kinase activator 3A 2 2
MIRT696099 SETD1A SET domain containing 1A 2 2
MIRT697955 TSPYL1 TSPY like 1 2 2
MIRT699481 SLC10A6 solute carrier family 10 member 6 2 2
MIRT708274 ZNF101 zinc finger protein 101 2 2
MIRT712147 TAOK1 TAO kinase 1 2 2
MIRT717122 SOWAHA sosondowah ankyrin repeat domain family member A 2 2
MIRT717643 HLX H2.0 like homeobox 2 2
MIRT755336 DCAF1 DDB1 and CUL4 associated factor 1 6 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3175 Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-3175 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3175 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-3175 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-3175 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-3175 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PATU8988)
hsa-miR-3175 Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3175 Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3175 Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-3175 Temozolomide 5394 NSC362856 approved sensitive High Glioblastoma cell line (U251)
hsa-mir-3175 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-3175 Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-3175 Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-3175 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-3175 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-3175 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-3175 Cisplatin 5460033 NSC119875 approved sensitive cell line (BGC-823)
hsa-miR-3175 Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-3175 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-3175 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-3175 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-3175 Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-3175 Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-3175 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3175 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-3175 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3175 Neoadjuvant chemotherapy resistant tissue (breast cancer)

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