miRTarBase - #MIRT448407


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pre-miRNA Information
pre-miRNA hsa-mir-4729   
Genomic Coordinates chr17: 59366083 - 59366154
Description Homo sapiens miR-4729 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4729
Sequence 10| UCAUUUAUCUGUUGGGAAGCUA |31
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN28205519 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1167550125 15 dbSNP
rs1022075979 18 dbSNP
rs967769645 19 dbSNP
Putative Targets

Gene Information
Gene Symbol TNFAIP3   
Synonyms A20, AISBL, OTUD7C, TNFA1P2
Description TNF alpha induced protein 3
Transcript NM_006290   
Expression
Putative miRNA Targets on TNFAIP3
3'UTR of TNFAIP3
(miRNA target sites are highlighted)		 
>TNFAIP3|NM_006290|3'UTR
   1 CCGGAAACAGGTGGGTCACCTCCTGCAAGAAGTGGGGCCTCGAGCTGTCAGTCATCATGGTGCTATCCTCTGAACCCCTC
  81 AGCTGCCACTGCAACAGTGGGCTTAAGGGTGTCTGAGCAGGAGAGGAAAGATAAGCTCTTCGTGGTGCCCACGATGCTCA
 161 GGTTTGGTAACCCGGGAGTGTTCCCAGGTGGCCTTAGAAAGCAAAGCTTGTAACTGGCAAGGGATGATGTCAGATTCAGC
 241 CCAAGGTTCCTCCTCTCCTACCAAGCAGGAGGCCAGGAACTTCTTTGGACTTGGAAGGTGTGCGGGGACTGGCCGAGGCC
 321 CCTGCACCCTGCGCATCAGGACTGCTTCATCGTCTTGGCTGAGAAAGGGAAAAGACACACAAGTCGCGTGGGTTGGAGAA
 401 GCCAGAGCCATTCCACCTCCCCTCCCCCAGCATCTCTCAGAGATGTGAAGCCAGATCCTCATGGCAGCGAGGCCCTCTGC
 481 AAGAAGCTCAAGGAAGCTCAGGGAAAATGGACGTATTCAGAGAGTGTTTGTAGTTCATGGTTTTTCCCTACCTGCCCGGT
 561 TCCTTTCCTGAGGACCCGGCAGAAATGCAGAACCATCCATGGACTGTGATTCTGAGGCTGCTGAGACTGAACATGTTCAC
 641 ATTGACAGAAAAACAAGCTGCTCTTTATAATATGCACCTTTTAAAAAATTAGAATATTTTACTGGGAAGACGTGTAACTC
 721 TTTGGGTTATTACTGTCTTTACTTCTAAAGAAGTTAGCTTGAACTGAGGAGTAAAAGTGTGTACATATATAATATACCCT
 801 TACATTATGTATGAGGGATTTTTTTAAATTATATTGAAATGCTGCCCTAGAAGTACAATAGGAAGGCTAAATAATAATAA
 881 CCTGTTTTCTGGTTGTTGTTGGGGCATGAGCTTGTGTATACACTGCTTGCATAAACTCAACCAGCTGCCTTTTTAAAGGG
 961 AGCTCTAGTCCTTTTTGTGTAATTCACTTTATTTATTTTATTACAAACTTCAAGATTATTTAAGTGAAGATATTTCTTCA
1041 GCTCTGGGGAAAATGCCACAGTGTTCTCCTGAGAGAACATCCTTGCTTTGAGTCAGGCTGTGGGCAAGTTCCTGACCACA
1121 GGGAGTAAATTGGCCTCTTTGATACACTTTTGCTTGCCTCCCCAGGAAAGAAGGAATTGCATCCAAGGTATACATACATA
1201 TTCATCGATGTTTCGTGCTTCTCCTTATGAAACTCCAGCTATGTAATAAAAAACTATACTCTGTGTTCTGTTAATGCCTC
1281 TGAGTGTCCTACCTCCTTGGAGATGAGATAGGGAAGGAGCAGGGATGAGACTGGCAATGGTCACAGGGAAAGATGTGGCC
1361 TTTTGTGATGGTTTTATTTTCTGTTAACACTGTGTCCTGGGGGGGCTGGGAAGTCCCCTGCATCCCATGGTACCCTGGTA
1441 TTGGGACAGCAAAAGCCAGTAACCATGAGTATGAGGAAATCTCTTTCTGTTGCTGGCTTACAGTTTCTCTGTGTGCTTTG
1521 TGGTTGCTGTCATATTTGCTCTAGAAGAAAAAAAAAAAAGGAGGGGAAATGCATTTTCCCCAGAGATAAAGGCTGCCATT
1601 TTGGGGGTCTGTACTTATGGCCTGAAAATATTTGTGATCCATAACTCTACACAGCCTTTACTCATACTATTAGGCACACT
1681 TTCCCCTTAGAGCCCCCTAAGTTTTTCCCAGACGAATCTTTATAATTTCTTTCCAAAGATACCAAATAAACTTCAGTGTT
1761 TTCATCTAATTCTCTTAAAGTTGATATCTTAATATTTTGTGTTGATCATTATTTCCATTCTTAATGTGAAAAAAAGTAAT
1841 TATTTATACTTATTATAAAAAGTATTTGAAATTTGCACATTTAATTGTCCCTAATAGAAAGCCACCTATTCTTTGTTGGA
1921 TTTCTTCAAGTTTTTCTAAATAAATGTAACTTTTCACAAGAGTCAACATTAAAAAATAAATTATTTAAGAACAGAAAAAA
2001 AAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auCGAAGGGUUGUCUAUUUACu 5'
            |:||::|  :| ||||||| 
Target 5' aaGTTTTTC--TAAATAAATGt 3'
 1928 - 1947 156.00 -9.80
2 
miRNA  3' aucGAAGGGUUGUCUAUUUACu 5'
             :||||| | ||||||| | 
Target 5' catTTTCCCCAGAGATAAAGGc 3'
 1572 - 1593 143.00 -15.10
3 
miRNA  3' aucGAAGGGUU------GUCUAUUUacu 5'
             |||:||||      || |||||   
Target 5' tttCTTTCCAAAGATACCAAATAAActt 3'
 1726 - 1753 125.00 -10.56
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31497945 26 COSMIC
COSN9968496 26 COSMIC
COSN9968497 27 COSMIC
COSN30499652 43 COSMIC
COSN30179234 50 COSMIC
COSN30179221 57 COSMIC
COSN30188700 58 COSMIC
COSN7691052 69 COSMIC
COSN30528274 71 COSMIC
COSN31598283 79 COSMIC
COSN28765077 102 COSMIC
COSN511219 114 COSMIC
COSN28201285 142 COSMIC
COSN17879111 773 COSMIC
COSN8398779 826 COSMIC
COSN23140940 970 COSMIC
COSN31962693 1200 COSMIC
COSN32064655 1497 COSMIC
COSN27451199 1560 COSMIC
COSN2143505 1822 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1251625358 2 dbSNP
rs1214881505 3 dbSNP
rs757760156 4 dbSNP
rs1487756533 5 dbSNP
rs779518425 15 dbSNP
rs746198660 17 dbSNP
rs373379580 21 dbSNP
rs1221029029 22 dbSNP
rs1320000314 29 dbSNP
rs747161794 30 dbSNP
rs769013751 33 dbSNP
rs762024480 34 dbSNP
rs1296079196 35 dbSNP
rs956690117 37 dbSNP
rs765060800 38 dbSNP
rs1415611084 40 dbSNP
rs773151202 42 dbSNP
rs762827280 43 dbSNP
rs1395986726 46 dbSNP
rs987899562 55 dbSNP
rs1292596280 60 dbSNP
rs1433772682 75 dbSNP
rs917611752 77 dbSNP
rs146085256 81 dbSNP
rs1411836845 84 dbSNP
rs980897443 87 dbSNP
rs1328218842 97 dbSNP
rs140042278 102 dbSNP
rs1461043420 109 dbSNP
rs942271443 110 dbSNP
rs1268875970 112 dbSNP
rs749970403 116 dbSNP
rs1364693071 119 dbSNP
rs1250032281 133 dbSNP
rs1215730492 137 dbSNP
rs897987121 142 dbSNP
rs544427839 143 dbSNP
rs1266189554 146 dbSNP
rs143551019 153 dbSNP
rs1312562806 154 dbSNP
rs1051818014 160 dbSNP
rs530062498 167 dbSNP
rs1217181708 170 dbSNP
rs762612801 172 dbSNP
rs1433740028 175 dbSNP
rs1007530662 176 dbSNP
rs1018223400 177 dbSNP
rs892725407 185 dbSNP
rs868246585 188 dbSNP
rs1032210794 190 dbSNP
rs1052224769 192 dbSNP
rs889193332 193 dbSNP
rs1240203229 199 dbSNP
rs1392289333 202 dbSNP
rs1464513394 206 dbSNP
rs1246196745 218 dbSNP
rs956562699 224 dbSNP
rs1483531465 233 dbSNP
rs1007684138 239 dbSNP
rs988297081 245 dbSNP
rs1230756025 247 dbSNP
rs1018119985 267 dbSNP
rs970810939 272 dbSNP
rs1187083927 273 dbSNP
rs1417211792 278 dbSNP
rs980379022 281 dbSNP
rs1362481548 301 dbSNP
rs1314230540 304 dbSNP
rs926281184 305 dbSNP
rs1403494681 307 dbSNP
rs536429885 310 dbSNP
rs1418864140 311 dbSNP
rs995757886 315 dbSNP
rs1025535440 316 dbSNP
rs545000946 319 dbSNP
rs1316663014 322 dbSNP
rs146885399 329 dbSNP
rs929458947 330 dbSNP
rs991824779 333 dbSNP
rs890522349 334 dbSNP
rs1255429827 343 dbSNP
rs1198600831 352 dbSNP
rs1024629447 353 dbSNP
rs751293346 357 dbSNP
rs1000823464 368 dbSNP
rs1354217820 375 dbSNP
rs1244921305 377 dbSNP
rs1339320311 381 dbSNP
rs559927744 384 dbSNP
rs77191406 386 dbSNP
rs1294678770 387 dbSNP
rs1352787842 389 dbSNP
rs1309005346 392 dbSNP
rs1356612764 397 dbSNP
rs956752260 405 dbSNP
rs76710415 411 dbSNP
rs1165183474 421 dbSNP
rs1458498039 425 dbSNP
rs1009371329 428 dbSNP
rs1473522242 432 dbSNP
rs1252329757 433 dbSNP
rs1281851889 443 dbSNP
rs564911334 456 dbSNP
rs1181150011 463 dbSNP
rs1481927675 469 dbSNP
rs980449400 470 dbSNP
rs1025160748 473 dbSNP
rs1355046241 478 dbSNP
rs925041677 491 dbSNP
rs1232064234 494 dbSNP
rs373372607 498 dbSNP
rs527299711 501 dbSNP
rs1331816264 503 dbSNP
rs1217195414 510 dbSNP
rs756408610 513 dbSNP
rs936825890 514 dbSNP
rs551860628 531 dbSNP
rs1033347445 533 dbSNP
rs914141148 539 dbSNP
rs962977486 547 dbSNP
rs973634414 551 dbSNP
rs1412658059 557 dbSNP
rs1157089510 558 dbSNP
rs1410571851 559 dbSNP
rs1248172117 568 dbSNP
rs568937814 573 dbSNP
rs879235199 577 dbSNP
rs919489538 578 dbSNP
rs929483890 579 dbSNP
rs1264716507 581 dbSNP
rs987681342 601 dbSNP
rs933597929 614 dbSNP
rs1374175097 626 dbSNP
rs1417232947 627 dbSNP
rs1314168757 633 dbSNP
rs912033817 635 dbSNP
rs531267718 641 dbSNP
rs73778206 643 dbSNP
rs1277445171 644 dbSNP
rs1349062973 645 dbSNP
rs1375196179 653 dbSNP
rs904526334 664 dbSNP
rs1240618884 682 dbSNP
rs943355772 688 dbSNP
rs567520472 702 dbSNP
rs1330708469 704 dbSNP
rs1324087083 713 dbSNP
rs1345635285 719 dbSNP
rs1389393831 721 dbSNP
rs1319815198 726 dbSNP
rs764538866 727 dbSNP
rs1037758299 731 dbSNP
rs1427077811 732 dbSNP
rs935952614 734 dbSNP
rs1054124188 736 dbSNP
rs1392916093 746 dbSNP
rs899264273 754 dbSNP
rs879644492 770 dbSNP
rs892357180 774 dbSNP
rs1009878156 780 dbSNP
rs1415772304 786 dbSNP
rs995331824 788 dbSNP
rs1215771366 789 dbSNP
rs754256368 796 dbSNP
rs536579203 797 dbSNP
rs1201417926 798 dbSNP
rs906376168 810 dbSNP
rs553641580 814 dbSNP
rs1234825334 819 dbSNP
rs1366108633 819 dbSNP
rs1001914274 826 dbSNP
rs1033357359 827 dbSNP
rs867345240 832 dbSNP
rs5029966 834 dbSNP
rs182842072 847 dbSNP
rs951025444 853 dbSNP
rs148995655 857 dbSNP
rs968993046 859 dbSNP
rs1001839016 862 dbSNP
rs575848194 863 dbSNP
rs1184223049 867 dbSNP
rs1408888242 868 dbSNP
rs1473469170 894 dbSNP
rs1239743722 897 dbSNP
rs187746434 900 dbSNP
rs1278628073 915 dbSNP
rs554831620 915 dbSNP
rs1032029611 916 dbSNP
rs943476821 922 dbSNP
rs974831719 925 dbSNP
rs191520762 933 dbSNP
rs1212918758 940 dbSNP
rs958052273 944 dbSNP
rs1337169374 960 dbSNP
rs925996475 963 dbSNP
rs184063064 966 dbSNP
rs1302386134 976 dbSNP
rs1053146390 979 dbSNP
rs1309594124 988 dbSNP
rs1430043771 989 dbSNP
rs113524093 991 dbSNP
rs745934760 997 dbSNP
rs1368566737 1017 dbSNP
rs891776112 1025 dbSNP
rs1413802719 1034 dbSNP
rs1183021633 1035 dbSNP
rs1475160288 1041 dbSNP
rs1255911112 1043 dbSNP
rs945355144 1048 dbSNP
rs1275387383 1050 dbSNP
rs1046707099 1053 dbSNP
rs1338759475 1057 dbSNP
rs906386056 1057 dbSNP
rs187253173 1061 dbSNP
rs1275283733 1065 dbSNP
rs756164969 1066 dbSNP
rs1458370396 1072 dbSNP
rs1232650014 1079 dbSNP
rs758539214 1080 dbSNP
rs5029967 1081 dbSNP
rs747254301 1083 dbSNP
rs987685929 1093 dbSNP
rs1349586195 1100 dbSNP
rs1455881884 1101 dbSNP
rs1296097281 1120 dbSNP
rs1026013434 1134 dbSNP
rs1200141694 1136 dbSNP
rs950431791 1138 dbSNP
rs1474757361 1143 dbSNP
rs1461416839 1144 dbSNP
rs1009153542 1146 dbSNP
rs1161944510 1153 dbSNP
rs1473132802 1157 dbSNP
rs1407634493 1160 dbSNP
rs1175775108 1161 dbSNP
rs1464534493 1163 dbSNP
rs910817645 1183 dbSNP
rs1165647570 1186 dbSNP
rs370877177 1191 dbSNP
rs943326102 1192 dbSNP
rs1037727518 1194 dbSNP
rs1467152950 1196 dbSNP
rs920675923 1199 dbSNP
rs929413785 1204 dbSNP
rs768297733 1207 dbSNP
rs5029968 1208 dbSNP
rs531354473 1210 dbSNP
rs796423784 1216 dbSNP
rs1013428303 1222 dbSNP
rs1390133016 1224 dbSNP
rs368124900 1232 dbSNP
rs1458229449 1234 dbSNP
rs989301463 1237 dbSNP
rs1442847565 1242 dbSNP
rs905137463 1243 dbSNP
rs1325779618 1247 dbSNP
rs1157331853 1254 dbSNP
rs1424158052 1257 dbSNP
rs913237985 1258 dbSNP
rs1193176443 1259 dbSNP
rs561408738 1262 dbSNP
rs1001807889 1282 dbSNP
rs73566247 1287 dbSNP
rs1318748973 1288 dbSNP
rs1485489933 1289 dbSNP
rs1258786032 1296 dbSNP
rs1232862833 1302 dbSNP
rs151101149 1319 dbSNP
rs1231543982 1335 dbSNP
rs1470062162 1338 dbSNP
rs776491540 1340 dbSNP
rs1009772329 1342 dbSNP
rs1020706773 1351 dbSNP
rs955011795 1356 dbSNP
rs1287578902 1360 dbSNP
rs1445761018 1361 dbSNP
rs987654689 1364 dbSNP
rs1196006452 1376 dbSNP
rs1425099376 1384 dbSNP
rs1173318570 1389 dbSNP
rs1392156828 1391 dbSNP
rs1189263512 1392 dbSNP
rs1259603242 1399 dbSNP
rs1477874076 1399 dbSNP
rs910786691 1400 dbSNP
rs192024473 1401 dbSNP
rs964986075 1402 dbSNP
rs538953176 1405 dbSNP
rs1415212858 1406 dbSNP
rs552586359 1414 dbSNP
rs1163605891 1421 dbSNP
rs1167650416 1429 dbSNP
rs73778207 1431 dbSNP
rs1380431254 1433 dbSNP
rs1395717238 1435 dbSNP
rs1320247402 1441 dbSNP
rs1398300046 1445 dbSNP
rs747980904 1446 dbSNP
rs1356567902 1449 dbSNP
rs201356190 1451 dbSNP
rs1341159750 1458 dbSNP
rs569252535 1460 dbSNP
rs1312628597 1464 dbSNP
rs1048242310 1466 dbSNP
rs917353274 1468 dbSNP
rs1413211437 1470 dbSNP
rs1372675246 1493 dbSNP
rs1168661592 1502 dbSNP
rs949198426 1511 dbSNP
rs12661 1516 dbSNP
rs1461559447 1524 dbSNP
rs1371343262 1525 dbSNP
rs1166913723 1529 dbSNP
rs538377123 1533 dbSNP
rs1414263155 1542 dbSNP
rs1291598202 1543 dbSNP
rs1337221765 1545 dbSNP
rs145896014 1546 dbSNP
rs1047895956 1548 dbSNP
rs1266682387 1548 dbSNP
rs886113499 1548 dbSNP
rs964097880 1548 dbSNP
rs1247687800 1549 dbSNP
rs1336068023 1564 dbSNP
rs1293171536 1591 dbSNP
rs1260481816 1592 dbSNP
rs1349024155 1593 dbSNP
rs549748293 1597 dbSNP
rs1002112234 1608 dbSNP
rs1053456375 1614 dbSNP
rs1391037827 1616 dbSNP
rs533996324 1619 dbSNP
rs1009245271 1620 dbSNP
rs1292639841 1622 dbSNP
rs1488292329 1633 dbSNP
rs773353285 1641 dbSNP
rs1021097310 1642 dbSNP
rs890233768 1646 dbSNP
rs964981131 1648 dbSNP
rs996415915 1650 dbSNP
rs1009054555 1656 dbSNP
rs1017819073 1664 dbSNP
rs964954971 1670 dbSNP
rs1209936804 1672 dbSNP
rs1467605520 1685 dbSNP
rs1273111730 1691 dbSNP
rs1033209892 1692 dbSNP
rs762517436 1698 dbSNP
rs1027913212 1700 dbSNP
rs1238650080 1702 dbSNP
rs988921950 1703 dbSNP
rs950748023 1704 dbSNP
rs913280308 1714 dbSNP
rs1441745879 1715 dbSNP
rs971441451 1750 dbSNP
rs1393761389 1752 dbSNP
rs1323877257 1759 dbSNP
rs1361096923 1778 dbSNP
rs1434101056 1783 dbSNP
rs1311132944 1788 dbSNP
rs1381495852 1793 dbSNP
rs1396784624 1802 dbSNP
rs1453279708 1821 dbSNP
rs1473285316 1826 dbSNP
rs1306585750 1828 dbSNP
rs1212437569 1829 dbSNP
rs981432800 1829 dbSNP
rs1285448741 1834 dbSNP
rs983490699 1836 dbSNP
rs927284775 1838 dbSNP
rs1348907797 1839 dbSNP
rs1276846230 1844 dbSNP
rs1241630544 1847 dbSNP
rs1287271748 1850 dbSNP
rs73778208 1853 dbSNP
rs5029958 1854 dbSNP
rs545778215 1876 dbSNP
rs981904226 1885 dbSNP
rs200016426 1887 dbSNP
rs1326979457 1888 dbSNP
rs562176404 1891 dbSNP
rs926498494 1900 dbSNP
rs1317504335 1906 dbSNP
rs1398744637 1907 dbSNP
rs1158048891 1917 dbSNP
rs575645800 1920 dbSNP
rs1054079451 1930 dbSNP
rs1047486947 1939 dbSNP
rs886163382 1941 dbSNP
rs1189909048 1945 dbSNP
rs1475426165 1947 dbSNP
rs60589019 1948 dbSNP
rs945016249 1949 dbSNP
rs1445697348 1957 dbSNP
rs1282910095 1960 dbSNP
rs1211917220 1979 dbSNP
rs1040089085 1993 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000237289.4 | 3UTR | UCAAGUUUUUCUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
128 hsa-miR-4729 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055606 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT057816 SLC30A7 solute carrier family 30 member 7 2 2
MIRT061212 MED17 mediator complex subunit 17 2 2
MIRT071507 CALM1 calmodulin 1 2 6
MIRT072873 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT076728 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT087566 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 2
MIRT158563 TNRC6B trinucleotide repeat containing 6B 2 4
MIRT175514 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT189775 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT198074 H3F3B H3 histone family member 3B 2 4
MIRT216059 IL6ST interleukin 6 signal transducer 2 10
MIRT219256 RREB1 ras responsive element binding protein 1 2 2
MIRT244716 INIP INTS3 and NABP interacting protein 2 2
MIRT271125 ZNF268 zinc finger protein 268 2 4
MIRT299114 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT303511 NAGK N-acetylglucosamine kinase 2 6
MIRT314695 TMEM167A transmembrane protein 167A 2 4
MIRT334550 AMOTL1 angiomotin like 1 2 4
MIRT441656 DEK DEK proto-oncogene 2 2
MIRT442232 BTD biotinidase 2 2
MIRT442418 LBR lamin B receptor 2 2
MIRT443352 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT444351 KIAA1211 KIAA1211 2 2
MIRT444910 KIAA1841 KIAA1841 2 2
MIRT448407 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT456345 OLIG3 oligodendrocyte transcription factor 3 2 8
MIRT467281 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT467925 SLC16A7 solute carrier family 16 member 7 2 2
MIRT468463 SET SET nuclear proto-oncogene 2 2
MIRT469438 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT475947 GXYLT1 glucoside xylosyltransferase 1 2 2
MIRT478069 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT479428 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT484710 RNF11 ring finger protein 11 2 2
MIRT491912 XIAP X-linked inhibitor of apoptosis 2 2
MIRT493551 HSPA5 heat shock protein family A (Hsp70) member 5 2 2
MIRT496126 ARF6 ADP ribosylation factor 6 2 2
MIRT500793 TLK1 tousled like kinase 1 2 6
MIRT504649 RPL9 ribosomal protein L9 2 6
MIRT513847 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT519806 ZMYM2 zinc finger MYM-type containing 2 2 4
MIRT521156 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT521919 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522402 MYADM myeloid associated differentiation marker 2 4
MIRT526434 PARP15 poly(ADP-ribose) polymerase family member 15 2 4
MIRT526779 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT527864 SLC39A14 solute carrier family 39 member 14 2 2
MIRT528063 OLAH oleoyl-ACP hydrolase 2 2
MIRT528640 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT529586 TMEM220 transmembrane protein 220 2 2
MIRT529810 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT531274 PPIL3 peptidylprolyl isomerase like 3 2 2
MIRT531430 MPZL3 myelin protein zero like 3 2 2
MIRT532141 ZNF331 zinc finger protein 331 2 2
MIRT535825 MTFR1L mitochondrial fission regulator 1 like 2 2
MIRT536253 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT537386 FGF2 fibroblast growth factor 2 2 2
MIRT543499 MDM2 MDM2 proto-oncogene 2 4
MIRT543564 RPF2 ribosome production factor 2 homolog 2 4
MIRT544457 KRBOX4 KRAB box domain containing 4 2 2
MIRT544902 DCTPP1 dCTP pyrophosphatase 1 2 2
MIRT545104 RAG1 recombination activating 1 2 2
MIRT546244 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT548287 FAM3C family with sequence similarity 3 member C 2 4
MIRT549268 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT550479 TMEM241 transmembrane protein 241 2 2
MIRT550657 ZFP37 ZFP37 zinc finger protein 2 2
MIRT551807 ITGA1 integrin subunit alpha 1 2 2
MIRT552582 ZFHX3 zinc finger homeobox 3 2 2
MIRT552671 YY1 YY1 transcription factor 2 4
MIRT553044 USP28 ubiquitin specific peptidase 28 2 2
MIRT553602 TM7SF3 transmembrane 7 superfamily member 3 2 2
MIRT553816 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554618 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT556556 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT558290 DUSP8 dual specificity phosphatase 8 2 2
MIRT558487 DBN1 drebrin 1 2 2
MIRT559313 ATXN1 ataxin 1 2 2
MIRT560704 PRPF4B pre-mRNA processing factor 4B 2 2
MIRT562660 ARHGDIA Rho GDP dissociation inhibitor alpha 2 2
MIRT564158 ZNF117 zinc finger protein 117 2 2
MIRT564614 ZNF703 zinc finger protein 703 2 2
MIRT567236 HSPA1B heat shock protein family A (Hsp70) member 1B 2 2
MIRT568753 DDAH1 dimethylarginine dimethylaminohydrolase 1 2 2
MIRT570780 ZNF83 zinc finger protein 83 2 2
MIRT570919 ZNF138 zinc finger protein 138 2 2
MIRT571254 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT573776 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 2 2
MIRT574670 HNRNPDL heterogeneous nuclear ribonucleoprotein D like 2 2
MIRT609759 TSPAN14 tetraspanin 14 2 2
MIRT613119 EID1 EP300 interacting inhibitor of differentiation 1 2 2
MIRT614384 FGFBP3 fibroblast growth factor binding protein 3 2 2
MIRT625801 MDC1 mediator of DNA damage checkpoint 1 2 2
MIRT634869 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT635723 ALKBH4 alkB homolog 4, lysine demethylase 2 2
MIRT636944 LIMS3 LIM zinc finger domain containing 3 2 2
MIRT637010 LIMS3L LIM zinc finger domain containing 4 2 2
MIRT639357 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT640995 PROK2 prokineticin 2 2 2
MIRT641343 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT641495 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT642076 FUT11 fucosyltransferase 11 2 2
MIRT646837 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT648154 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT650020 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 2 2
MIRT650603 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 2 2
MIRT650624 GNB4 G protein subunit beta 4 2 2
MIRT652677 TIGD2 tigger transposable element derived 2 2 2
MIRT652721 TGFBRAP1 transforming growth factor beta receptor associated protein 1 2 2
MIRT654395 RBFOX2 RNA binding protein, fox-1 homolog 2 2 2
MIRT654659 PSPH phosphoserine phosphatase 2 2
MIRT654771 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT655696 NUDT21 nudix hydrolase 21 2 2
MIRT657635 GPRIN3 GPRIN family member 3 2 2
MIRT686214 ZNF267 zinc finger protein 267 2 2
MIRT690315 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT696323 DCAF15 DDB1 and CUL4 associated factor 15 2 2
MIRT697602 YAP1 Yes associated protein 1 2 2
MIRT702188 LYPD3 LY6/PLAUR domain containing 3 2 2
MIRT703577 FBXO9 F-box protein 9 2 2
MIRT707807 TSPAN6 tetraspanin 6 2 2
MIRT715951 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT716970 CNOT6 CCR4-NOT transcription complex subunit 6 2 2
MIRT718223 DEFB105B defensin beta 105B 2 2
MIRT718243 DEFB105A defensin beta 105A 2 2
MIRT719815 TXNDC17 thioredoxin domain containing 17 2 2
MIRT722082 SMC2 structural maintenance of chromosomes 2 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miR-4729 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4729 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-4729 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-4729 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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