miRTarBase - #MIRT448501


—
pre-miRNA Information
pre-miRNA hsa-mir-4463   
Genomic Coordinates chr6: 75428407 - 75428473
Description Homo sapiens miR-4463 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4463
Sequence 40| GAGACUGGGGUGGGGCC |56
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1176036098 3 dbSNP
rs368879370 7 dbSNP
rs991713068 9 dbSNP
rs909477315 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RYBP   
Synonyms AAP1, APAP-1, DEDAF, YEAF1
Description RING1 and YY1 binding protein
Transcript NM_012234   
Expression
Putative miRNA Targets on RYBP
3'UTR of RYBP
(miRNA target sites are highlighted)		 
>RYBP|NM_012234|3'UTR
   1 AATTGCACATGGAATTGTGAAAACTATGAATCAGGGTATGAAATTCAAAACCTCCACCTGCCCATGCTGCTTGCATCCCT
  81 GGAGAATCTTCTGTGGACATCGACCTCTTAGTGATGCTGCCAGGATAATTTCTGCTTGCCATGGGCATCTGGCCACCAAG
 161 GAATTTCGCACCCTGACGATTACTCTTGACACTTTTATGTATTCCATTGTTTTATATGATTTTCCTAACAATCATTTATA
 241 ATTGGATGTGCTCCTGAATCTACTTTTTATAAAAAAAAAAAAATCTGCTGTGCACAATTTTCCATGTACATTACAACTGG
 321 TTTTTTGTTTTTGTTTTGTTGCCGGTGGGGAGGGCTGGGAGGGGGAGGGAACTTTTATTTATTGTGTTCACAAACTCCAT
 401 CCTTTCAGCATATCCTTTTAAGTTTAGTTCTTTCTTCCAGTTATACTATGTACTATCAGTTTTGATATAACTATATATAT
 481 ATAAATATAAAATTATATATAAAGGGTTATTTGAAACCAATCCATGGCAACGCTGGTGCTTGATACACTGTGAAGTGAAT
 561 ACAACATTGAACAGTTACAGATCTGGGACAGTCCCTTCTATGAAAGTGCTGAAATTTAATTAAAATCAGTCTTATATGAA
 641 GTATGTTCCAATCCATGTGGGAACTTGACTCTCTCATCTGTCTAAAGAGTACTGGACGATATAAAAATATATATTTTTTA
 721 AACAATGTGATCTCAAATTTAAAGACTGCTCCAGATAGCCTGCATTTGCAATGGAATAACTGACAAATCACAAGTGGTTT
 801 AGTTGGGCAGGGCTTTGATCATTCAAAAGTAACTAAAGTAGCTCCAGAATGCCAAGTATTCGTGTAAATTACGGTTACAT
 881 GTTATCATTTGCTGTTCTTACATAAGCACTCATGAAAATATGGTATTCTGTAACTTGAATTCCATCCATTTTCCAGACCT
 961 CTACTCATGTCTGAGGTAAATCTAGAAATTGTCTTAGTTTTAGGATTGAAACAGTCTATAAACTGTATTTTTGGTCCATC
1041 CAGGAAGCTAGTCCCTTGTTTCTCCTTTCTACATGACATTGCAGTGGTGGTTTCTGTAATTAAAATTTGTTTGCCTCATG
1121 TCCCTTTGTCTGATAAACCTTCACTCTACCGATTCAGTTGTGAGCATTCTTTTTTTCCTTCTCAAAACCTACTATGATTT
1201 GTTTTACTGAACAAAGGTTATCAACCACACATCCAGTCCTGACATGGAGCTTTTCAGTGTTTGGAGACATTTCTCAATCC
1281 CCTGCTGTGGTAGGAACTCCAGTGGTGAACGGCTTGCGCGCCTGCAGCCAGAGTTGCAGGGAAAGCTCGTACTTACTGCG
1361 AGCAGCATGTAATCTTTTTTCTTCCTGGACATAAAGATAGCTTGAGTAAACTGTTCTATTTCATTCTCTTCACTCTTTTT
1441 ACTGTCTTGCAAAAAAAAAAAAAAAAAAAATAATCAAAGACCACTAATAAGATTCCACCTCTCCTTATTAAAATAATTTT
1521 TTAAAATTTTGTTTTGCTTTTGTTTGGATGTGGGGTCTCTCTTCTATTTGACTTTTACATTTAGATACAGAGTTTGTAGT
1601 ACTTCAGAGACATTTCAAGCATGAGAATTTGAGGTTACCTCTCTTTATTTGACCTTTAGGGACTCACGGGAGGGCAGCCT
1681 GATTTGTAATGAAGCACCACATTTTGGTGTTAAAAACCTGGTTTGCTTAATAATAGCAGTAATTTCTGTCTGTGGAGGCA
1761 ACAAATAAAAAAATTAACAGCTTGAATTGAGTAGCCAACAGGAAAGGTTCCTTTCACATTTACATTAAAACTATTCTGTA
1841 GTCACTAATGTACCATAATTTAAATTCTTTTCTCAAAGGTATAGATTATAAAGCAGTGCCATTTGTTGCTGTGGTCCTAT
1921 TCTCAAATGCATGGACAATGTTCCCCCCTTTTTAAAATAATGCTTGTGTCTGGGATGCAAGCTTTGCTTATCTTTTTAAA
2001 TACATTTTTAAAGTATTTATTAATGAACCAAAGGAAATCAGATGCTTTCTATAAGCATCAGAATATATAATACATAGTGA
2081 TTTGACTATGAATTTTAAATCCACATTTTAATATTGGTGGGATATTGCAAAGACATTCCTTCTAAAGTTTTAATATTCCT
2161 TTTATTAAGGGTCTCAGGGAGGGTAAATTAGTCAGCCATATTTATTTTCCAGAGGTTTAAGAAATTGCTGTTTTTAACTT
2241 TTTGAAAAAACTTAAATGCCACCAAACTCATGTAGGTTGCACTGCTTATTGAACCAATAACTGTTGGTATGCACTTTGTT
2321 CAGACACACTGTGTACTTTTTCAAAAACTAGTTTCATGTAAAGTGATTGGACCCCATAGATTAGTGGAAAAAGCTGATTA
2401 ACCAGCTACTCATAGGCTGCTAATTCATTCATGCCAATGTTTTGGTTTTTCAGTTTTGCCTCCGTGATAAATTAAAGAAT
2481 GGGGAGGGGTGAAGGAAGGGGAAGAAGATTGCTTTAGAACAAGTGGCATGAAATTACCATCTTTGTAGAAACCGCAGCTA
2561 ACAGTGGGAGTTATCTAAGCAATCAGATGTTACAGGGCCAGCCCTTTAGCTGCTGTGGTGTATTCTGTTGGGTAGTGAGG
2641 TAGTAGGTACTTTATAGACTTTTAATTTTGGAAATTGATGACATCCCTCAGGCATGTATTCTGGAAATGGAATTCCTGTA
2721 ACTTCCTGTGTCTGCAGTATGCCCTACAATTAGTAGGCAGCGTGTAAAAACACTAGTGTAGATTATAAAGATATACATTA
2801 AAAGAGGACCAGAAATACTTGGTATTCAGTGGCACAGAAAGCAGGTTAAACAAACAAAAAGCACAGTGTTACGCTTGCAA
2881 GTTTCCATTTGTTTTAATACCACGCAATCTTTCACACTCGTGCGTGTGCGCGCACACAGAGCTTACCTGACTTGCTCTGC
2961 TTGAGTCATGCAGTTACAAAAAAAAAGACATCTTGACACCCACACAATATTCTAATCAAAACCTTTCAGTTTCAATCTGG
3041 ATATTTAAAAACATTGGCAGAAGCTTCTGTGAGTTTAGTTCCACTAAGATGTTTCACCTGCCTTATCAAGACCATTCTCA
3121 GTCTACTTTTTTAAGCTACCGTATCTTAAATTATTGAAAATTTATTAATTGCTGAATATATAATAACCTTTGCTTGTATG
3201 TAACCGAAAATGGTTTAAGAGCCAACATTTAGAGTATGACAATGGAGCTGAACAGTTTTTAATGCGCAAGCAGTTCTGTT
3281 CTTGTGTATGACTTGTAACCTTAATTTACTGTGTAAAGATGGTTACATTATTTCCTTAGCTTTGTTTGTTGGAGACAAAT
3361 AGAGAATGCTTGTTAAGTATGTCAAAACAATCTTATCTTGTGAATTTTTGTTAATGTATTATACGAGCTATATTTTTCAT
3441 TTGCCCAGAAAGACAGCTTGTATAACGCTTTTGGAAGTTTCTGCTCTGTAATGTCTTTAGAGCTGACAGTCTGTTAGGTT
3521 TGTTTTTTTCTTCATGCTAAAGTGTCAGTTGGTGGTTTTGTGAACTGGTCAAAAATTCACAGGTCTTAAATGTTTTGGGG
3601 GAAATTTATATTGGACACTGCTCTTTGTCTAGCAAATAAAAGATGTTAATATATTCCTGTTACTGGCATGTGCACGACTA
3681 TGTTATTAGAAGCCACTTTATCATTTTCCTGCTTTAAATAGAAATGTCTATTTATGAATTCTGCTTGTAGTTTTTTCACA
3761 AATAAAATAGTAAAATTTCCATTGGAAATCTTAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccggGGU-GGGGUCAGAg 5'
              ||| :|:|||||| 
Target 5' aagaCCATTCTCAGTCTa 3'
 3108 - 3125 137.00 -16.20
2 
miRNA  3' ccGGGGUG-GGGUCAGag 5'
            || ||| :||||||  
Target 5' aaCCACACATCCAGTCct 3'
 1223 - 1240 135.00 -16.20
3 
miRNA  3' ccgggguggGGUCAGAg 5'
                   :|||||| 
Target 5' taattaaaaTCAGTCTt 3'
 617 - 633 124.00 -9.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN9723693 1 COSMIC
COSN26993630 11 COSMIC
COSN30157639 12 COSMIC
COSN31575054 102 COSMIC
COSN19587425 153 COSMIC
COSN30132868 168 COSMIC
COSN30120972 178 COSMIC
COSN20098657 270 COSMIC
COSN25703647 333 COSMIC
COSN30169364 473 COSMIC
COSN26798630 484 COSMIC
COSN16441283 489 COSMIC
COSN19661678 531 COSMIC
COSN31530760 630 COSMIC
COSN31541820 676 COSMIC
COSN28689617 786 COSMIC
COSN1960340 877 COSMIC
COSN23471446 902 COSMIC
COSN21809505 962 COSMIC
COSN26005774 1241 COSMIC
COSN7706763 1461 COSMIC
COSN14893406 1462 COSMIC
COSN15588308 1463 COSMIC
COSN20090840 1464 COSMIC
COSN20098652 1464 COSMIC
COSN20098647 1466 COSMIC
COSN20098642 1468 COSMIC
COSN27353386 1468 COSMIC
COSN20090839 1482 COSMIC
COSN32174475 1681 COSMIC
COSN9569986 1902 COSMIC
COSN30161617 2090 COSMIC
COSN31596569 2091 COSMIC
COSN32174474 2139 COSMIC
COSN26639931 2294 COSMIC
COSN26509540 2313 COSMIC
COSN229513 2773 COSMIC
COSN229514 2903 COSMIC
COSN30175783 2904 COSMIC
COSN31553494 2919 COSMIC
COSN23423211 2929 COSMIC
COSN31541887 2931 COSMIC
COSN32174473 2949 COSMIC
COSN31556907 2977 COSMIC
COSN31545036 3051 COSMIC
COSN29772130 3125 COSMIC
COSN31523453 3142 COSMIC
COSN19243958 3163 COSMIC
COSN32174472 3192 COSMIC
COSN30540230 3265 COSMIC
COSN31536231 3416 COSMIC
COSN31562215 3424 COSMIC
COSN28812234 3482 COSMIC
COSN21799736 3585 COSMIC
COSN30159168 3675 COSMIC
rs115769518 2607 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs766048558 3 dbSNP
rs760283411 9 dbSNP
rs772767779 13 dbSNP
rs767005218 15 dbSNP
rs761743695 23 dbSNP
rs774444606 26 dbSNP
rs768526934 30 dbSNP
rs762686728 35 dbSNP
rs1282527678 36 dbSNP
rs749131046 37 dbSNP
rs1356304399 38 dbSNP
rs1288037469 42 dbSNP
rs1408375630 47 dbSNP
rs1191394146 48 dbSNP
rs775468965 49 dbSNP
rs1354554356 68 dbSNP
rs566376814 72 dbSNP
rs770081017 74 dbSNP
rs1449288964 75 dbSNP
rs979934707 76 dbSNP
rs1327029594 78 dbSNP
rs1244196727 86 dbSNP
rs970278401 99 dbSNP
rs918230107 101 dbSNP
rs756721278 102 dbSNP
rs762078394 105 dbSNP
rs1285740083 106 dbSNP
rs1487520389 107 dbSNP
rs1361710486 110 dbSNP
rs1263452268 116 dbSNP
rs943730343 124 dbSNP
rs911097556 128 dbSNP
rs1366250761 132 dbSNP
rs1446361859 138 dbSNP
rs1164192968 140 dbSNP
rs1359594432 141 dbSNP
rs1158770105 144 dbSNP
rs781730511 147 dbSNP
rs1417633749 152 dbSNP
rs1300230126 157 dbSNP
rs985305397 166 dbSNP
rs1401933329 167 dbSNP
rs1395716959 168 dbSNP
rs1332237804 169 dbSNP
rs1342401589 171 dbSNP
rs1014725685 177 dbSNP
rs958224557 178 dbSNP
rs1309180121 182 dbSNP
rs1351914018 184 dbSNP
rs950754900 189 dbSNP
rs1261734825 191 dbSNP
rs1411255726 195 dbSNP
rs1162223069 197 dbSNP
rs1199591749 202 dbSNP
rs1473008809 206 dbSNP
rs554459086 214 dbSNP
rs1026278508 219 dbSNP
rs1369942730 228 dbSNP
rs1379645418 239 dbSNP
rs1437536712 242 dbSNP
rs1373737390 245 dbSNP
rs1160992016 257 dbSNP
rs1364205752 259 dbSNP
rs1465720796 260 dbSNP
rs1191449326 263 dbSNP
rs1487948544 268 dbSNP
rs1263773349 269 dbSNP
rs200918240 270 dbSNP
rs397723430 271 dbSNP
rs71700844 272 dbSNP
rs11382371 284 dbSNP
rs1331209574 284 dbSNP
rs1358502895 288 dbSNP
rs34214935 302 dbSNP
rs1312034673 304 dbSNP
rs1289447045 305 dbSNP
rs1253885576 309 dbSNP
rs539245823 310 dbSNP
rs1229038246 316 dbSNP
rs1325014881 320 dbSNP
rs994834943 321 dbSNP
rs1203777311 327 dbSNP
rs1237083018 333 dbSNP
rs1456360331 338 dbSNP
rs1178947212 340 dbSNP
rs1358943279 341 dbSNP
rs1432390714 343 dbSNP
rs9838155 344 dbSNP
rs1039288280 346 dbSNP
rs1007747463 347 dbSNP
rs890593110 350 dbSNP
rs1463970244 354 dbSNP
rs1299252645 355 dbSNP
rs1367259047 359 dbSNP
rs1385480189 360 dbSNP
rs1300571497 361 dbSNP
rs1346979295 362 dbSNP
rs1432305183 370 dbSNP
rs1347548026 373 dbSNP
rs1256863426 382 dbSNP
rs1322515378 392 dbSNP
rs895900871 397 dbSNP
rs1034512311 399 dbSNP
rs1251851348 401 dbSNP
rs1396197224 406 dbSNP
rs1168319343 408 dbSNP
rs747518910 412 dbSNP
rs1270835144 418 dbSNP
rs1477369017 427 dbSNP
rs780560023 430 dbSNP
rs933697485 431 dbSNP
rs1477084023 440 dbSNP
rs1246160510 451 dbSNP
rs1171683482 452 dbSNP
rs1349828434 455 dbSNP
rs1456882882 456 dbSNP
rs1305306150 464 dbSNP
rs1222614575 473 dbSNP
rs912983165 477 dbSNP
rs1277186319 481 dbSNP
rs1215840620 484 dbSNP
rs1359204589 484 dbSNP
rs573911745 496 dbSNP
rs935657359 506 dbSNP
rs1219369588 507 dbSNP
rs925896063 517 dbSNP
rs1490457164 524 dbSNP
rs1198478567 530 dbSNP
rs980403042 531 dbSNP
rs1318967226 532 dbSNP
rs948594176 540 dbSNP
rs1413214028 556 dbSNP
rs764408375 564 dbSNP
rs1280659186 566 dbSNP
rs549871272 577 dbSNP
rs992928455 590 dbSNP
rs531283100 591 dbSNP
rs1273786584 597 dbSNP
rs950901897 600 dbSNP
rs1297149968 606 dbSNP
rs1343052892 622 dbSNP
rs1026392737 628 dbSNP
rs1288941580 631 dbSNP
rs4677160 635 dbSNP
rs963353545 638 dbSNP
rs1317078246 651 dbSNP
rs1359833197 652 dbSNP
rs548691056 653 dbSNP
rs1239181299 655 dbSNP
rs1400960510 661 dbSNP
rs1281943250 662 dbSNP
rs1464916872 669 dbSNP
rs1017886140 670 dbSNP
rs1448924903 673 dbSNP
rs1216857160 676 dbSNP
rs1400672073 676 dbSNP
rs985719925 684 dbSNP
rs1008193323 689 dbSNP
rs1482325073 690 dbSNP
rs936535337 694 dbSNP
rs925078485 697 dbSNP
rs1157200802 698 dbSNP
rs1410704469 700 dbSNP
rs764715216 702 dbSNP
rs760565823 706 dbSNP
rs1159401145 707 dbSNP
rs1424347147 708 dbSNP
rs1009731832 710 dbSNP
rs1338566711 711 dbSNP
rs182456741 713 dbSNP
rs753457950 714 dbSNP
rs1455634304 720 dbSNP
rs1020279804 723 dbSNP
rs535028701 725 dbSNP
rs992779186 727 dbSNP
rs1034458787 736 dbSNP
rs904168289 741 dbSNP
rs1044326785 748 dbSNP
rs1263878623 749 dbSNP
rs948603557 749 dbSNP
rs917169589 758 dbSNP
rs772720422 763 dbSNP
rs374778501 768 dbSNP
rs1458520421 776 dbSNP
rs929109424 778 dbSNP
rs1234905391 789 dbSNP
rs1470722576 790 dbSNP
rs1253401108 791 dbSNP
rs1177380848 793 dbSNP
rs1424052439 797 dbSNP
rs1208436448 799 dbSNP
rs919362144 806 dbSNP
rs973458896 826 dbSNP
rs551219499 833 dbSNP
rs1177924500 837 dbSNP
rs763847872 842 dbSNP
rs1017985526 843 dbSNP
rs986147494 849 dbSNP
rs1326784573 850 dbSNP
rs566604528 855 dbSNP
rs1279943379 857 dbSNP
rs77987705 861 dbSNP
rs1372464026 862 dbSNP
rs1225654227 864 dbSNP
rs192441828 872 dbSNP
rs543931089 873 dbSNP
rs1194521419 879 dbSNP
rs1445529762 881 dbSNP
rs1377389789 901 dbSNP
rs889430228 902 dbSNP
rs892611199 906 dbSNP
rs1479248100 909 dbSNP
rs1031396884 919 dbSNP
rs999868028 921 dbSNP
rs936383764 923 dbSNP
rs1166038475 926 dbSNP
rs186173293 934 dbSNP
rs760474200 937 dbSNP
rs1257416200 944 dbSNP
rs1044493861 948 dbSNP
rs925143270 950 dbSNP
rs576452046 953 dbSNP
rs948404651 958 dbSNP
rs4677159 959 dbSNP
rs1284173482 963 dbSNP
rs1339888454 967 dbSNP
rs1225356146 986 dbSNP
rs1358565413 988 dbSNP
rs1176631000 991 dbSNP
rs1057027916 994 dbSNP
rs1436667417 996 dbSNP
rs1378513803 1000 dbSNP
rs1290025126 1005 dbSNP
rs929140402 1008 dbSNP
rs1490946454 1016 dbSNP
rs1224169307 1018 dbSNP
rs1269192714 1021 dbSNP
rs1446117642 1022 dbSNP
rs542661215 1025 dbSNP
rs368965567 1027 dbSNP
rs919061209 1037 dbSNP
rs1037794737 1041 dbSNP
rs942134708 1042 dbSNP
rs910631622 1047 dbSNP
rs1238567871 1054 dbSNP
rs986567086 1071 dbSNP
rs572430320 1072 dbSNP
rs1360105102 1073 dbSNP
rs1320360859 1084 dbSNP
rs954716465 1090 dbSNP
rs1313558330 1099 dbSNP
rs1361987417 1109 dbSNP
rs1283199556 1118 dbSNP
rs923537695 1122 dbSNP
rs750303715 1128 dbSNP
rs1354020566 1138 dbSNP
rs988324092 1143 dbSNP
rs1027189873 1148 dbSNP
rs531919211 1148 dbSNP
rs1447081780 1150 dbSNP
rs994324904 1151 dbSNP
rs1394083843 1155 dbSNP
rs1241219415 1159 dbSNP
rs956877606 1162 dbSNP
rs13887 1165 dbSNP
rs1363085172 1167 dbSNP
rs539312713 1169 dbSNP
rs1160529928 1171 dbSNP
rs578232247 1177 dbSNP
rs1303390970 1183 dbSNP
rs117416237 1189 dbSNP
rs1416494262 1191 dbSNP
rs763135938 1191 dbSNP
rs183056342 1194 dbSNP
rs567246254 1197 dbSNP
rs140317781 1198 dbSNP
rs1334365149 1204 dbSNP
rs1297708052 1206 dbSNP
rs1262152979 1208 dbSNP
rs1350700515 1210 dbSNP
rs1202455218 1213 dbSNP
rs769986200 1214 dbSNP
rs1013019361 1218 dbSNP
rs1184200762 1219 dbSNP
rs1420382374 1224 dbSNP
rs1249489373 1227 dbSNP
rs533550399 1228 dbSNP
rs748420738 1232 dbSNP
rs1184204534 1236 dbSNP
rs879212932 1244 dbSNP
rs1364622385 1245 dbSNP
rs11542658 1250 dbSNP
rs895457312 1258 dbSNP
rs1174361676 1261 dbSNP
rs1000657787 1269 dbSNP
rs1057423351 1273 dbSNP
rs993376928 1274 dbSNP
rs1162869044 1277 dbSNP
rs903591009 1279 dbSNP
rs1394729932 1280 dbSNP
rs1308216496 1284 dbSNP
rs1335955726 1285 dbSNP
rs897745952 1287 dbSNP
rs566094496 1292 dbSNP
rs1423600287 1295 dbSNP
rs1325092819 1300 dbSNP
rs1204148929 1303 dbSNP
rs1250722346 1304 dbSNP
rs1479508755 1307 dbSNP
rs1197311283 1309 dbSNP
rs1042251362 1311 dbSNP
rs1480224662 1313 dbSNP
rs1037574320 1315 dbSNP
rs941832043 1317 dbSNP
rs146729530 1318 dbSNP
rs1487621142 1319 dbSNP
rs1170297903 1320 dbSNP
rs748191479 1322 dbSNP
rs1263060827 1331 dbSNP
rs533034672 1336 dbSNP
rs933330021 1348 dbSNP
rs1485875937 1349 dbSNP
rs13109 1356 dbSNP
rs1242115103 1357 dbSNP
rs142867086 1359 dbSNP
rs988354931 1360 dbSNP
rs11286 1367 dbSNP
rs980502760 1371 dbSNP
rs553594794 1372 dbSNP
rs1195133971 1374 dbSNP
rs1185969269 1381 dbSNP
rs1338428993 1384 dbSNP
rs1430800727 1389 dbSNP
rs979598688 1391 dbSNP
rs1384931417 1397 dbSNP
rs1423165659 1401 dbSNP
rs776727680 1404 dbSNP
rs1161231566 1405 dbSNP
rs1367027365 1412 dbSNP
rs1436803470 1417 dbSNP
rs1287768310 1418 dbSNP
rs1400701267 1420 dbSNP
rs543073502 1431 dbSNP
rs1359271223 1432 dbSNP
rs972790944 1432 dbSNP
rs969562885 1440 dbSNP
rs1023153579 1441 dbSNP
rs1298279522 1441 dbSNP
rs1457550035 1444 dbSNP
rs1350661581 1449 dbSNP
rs1167601989 1450 dbSNP
rs1293718676 1451 dbSNP
rs1360427988 1451 dbSNP
rs1477043305 1453 dbSNP
rs866043767 1457 dbSNP
rs201117119 1459 dbSNP
rs868735919 1460 dbSNP
rs1263163370 1461 dbSNP
rs199944574 1462 dbSNP
rs58664854 1462 dbSNP
rs201955712 1463 dbSNP
rs751086616 1463 dbSNP
rs1234661725 1464 dbSNP
rs60796793 1464 dbSNP
rs13065476 1465 dbSNP
rs776497692 1465 dbSNP
rs200013138 1466 dbSNP
rs59493059 1466 dbSNP
rs1157919009 1467 dbSNP
rs372055295 1467 dbSNP
rs13065475 1468 dbSNP
rs59997306 1468 dbSNP
rs58959555 1469 dbSNP
rs796297836 1469 dbSNP
rs796377290 1469 dbSNP
rs771318678 1470 dbSNP
rs1262635102 1471 dbSNP
rs1282462912 1471 dbSNP
rs1491178346 1471 dbSNP
rs71623968 1471 dbSNP
rs779000433 1471 dbSNP
rs961548980 1471 dbSNP
rs1244055986 1472 dbSNP
rs1469972786 1473 dbSNP
rs144595016 1475 dbSNP
rs867457494 1475 dbSNP
rs1277487886 1476 dbSNP
rs1228011707 1477 dbSNP
rs1328297154 1479 dbSNP
rs572496451 1482 dbSNP
rs1441241027 1483 dbSNP
rs1277607280 1491 dbSNP
rs148545656 1491 dbSNP
rs1229313264 1492 dbSNP
rs959979999 1495 dbSNP
rs1321512245 1499 dbSNP
rs1386249798 1501 dbSNP
rs1035397394 1505 dbSNP
rs993158043 1506 dbSNP
rs1437806775 1512 dbSNP
rs897775650 1513 dbSNP
rs987052918 1515 dbSNP
rs1202826349 1522 dbSNP
rs181220657 1523 dbSNP
rs1372087628 1527 dbSNP
rs1328105774 1530 dbSNP
rs1464398220 1535 dbSNP
rs1182471746 1540 dbSNP
rs1399975529 1548 dbSNP
rs747357218 1551 dbSNP
rs1479189982 1552 dbSNP
rs780441037 1555 dbSNP
rs1425759599 1556 dbSNP
rs578247220 1557 dbSNP
rs189469264 1566 dbSNP
rs73101471 1573 dbSNP
rs1356122275 1579 dbSNP
rs1050950484 1583 dbSNP
rs574137073 1585 dbSNP
rs374536305 1587 dbSNP
rs796426092 1589 dbSNP
rs1343661967 1595 dbSNP
rs1225403422 1597 dbSNP
rs1257134800 1602 dbSNP
rs1339296321 1610 dbSNP
rs1196135515 1611 dbSNP
rs555184843 1614 dbSNP
rs1483591572 1621 dbSNP
rs1341433411 1637 dbSNP
rs551189579 1641 dbSNP
rs933381161 1642 dbSNP
rs1267763695 1647 dbSNP
rs773825016 1647 dbSNP
rs1200335420 1648 dbSNP
rs901921592 1649 dbSNP
rs1475036062 1650 dbSNP
rs533612945 1655 dbSNP
rs1421337842 1658 dbSNP
rs1430190773 1664 dbSNP
rs1162747459 1667 dbSNP
rs746369772 1668 dbSNP
rs935320504 1673 dbSNP
rs925560186 1676 dbSNP
rs778435968 1679 dbSNP
rs1325941518 1682 dbSNP
rs1429159517 1689 dbSNP
rs948232003 1699 dbSNP
rs1245677811 1700 dbSNP
rs1343260839 1700 dbSNP
rs1290094006 1701 dbSNP
rs1356820818 1713 dbSNP
rs3203732 1714 dbSNP
rs1232700334 1721 dbSNP
rs1348598946 1729 dbSNP
rs1445948480 1731 dbSNP
rs9852026 1735 dbSNP
rs905095926 1736 dbSNP
rs1444776707 1737 dbSNP
rs756741979 1738 dbSNP
rs1376413949 1739 dbSNP
rs550953692 1746 dbSNP
rs1330019645 1747 dbSNP
rs959853829 1764 dbSNP
rs1035427924 1770 dbSNP
rs1383212346 1774 dbSNP
rs1393501151 1774 dbSNP
rs971749578 1775 dbSNP
rs919908084 1784 dbSNP
rs1399055556 1790 dbSNP
rs1320427820 1791 dbSNP
rs1366522159 1797 dbSNP
rs1452636195 1804 dbSNP
rs1313358452 1812 dbSNP
rs1385456159 1827 dbSNP
rs1400772559 1828 dbSNP
rs1246449365 1832 dbSNP
rs1265685558 1836 dbSNP
rs961682993 1838 dbSNP
rs1016203651 1863 dbSNP
rs144665457 1871 dbSNP
rs1269544270 1878 dbSNP
rs972820277 1882 dbSNP
rs940047338 1900 dbSNP
rs888950494 1911 dbSNP
rs528977625 1914 dbSNP
rs1028865213 1917 dbSNP
rs1240966081 1919 dbSNP
rs1395116737 1921 dbSNP
rs1175148684 1924 dbSNP
rs149780300 1926 dbSNP
rs753515216 1928 dbSNP
rs1237157303 1929 dbSNP
rs1182337973 1931 dbSNP
rs186159948 1932 dbSNP
rs901954018 1938 dbSNP
rs777444664 1943 dbSNP
rs1254012103 1944 dbSNP
rs1052452309 1946 dbSNP
rs935350070 1947 dbSNP
rs1389547799 1948 dbSNP
rs1199766923 1949 dbSNP
rs1348717990 1950 dbSNP
rs529095123 1955 dbSNP
rs1043961787 1963 dbSNP
rs1306785252 1964 dbSNP
rs1334799926 1972 dbSNP
rs1236499432 1973 dbSNP
rs568219899 1981 dbSNP
rs58470831 1984 dbSNP
rs1280349370 1990 dbSNP
rs11542659 1993 dbSNP
rs992370305 1997 dbSNP
rs1249642435 1998 dbSNP
rs939498753 2004 dbSNP
rs1339001263 2008 dbSNP
rs928388484 2010 dbSNP
rs1184628910 2013 dbSNP
rs971779206 2017 dbSNP
rs1415879456 2020 dbSNP
rs968127691 2022 dbSNP
rs961715938 2023 dbSNP
rs767201492 2025 dbSNP
rs1015898620 2030 dbSNP
rs984861781 2031 dbSNP
rs376893447 2036 dbSNP
rs1029312303 2037 dbSNP
rs997381783 2039 dbSNP
rs1009313427 2051 dbSNP
rs1407539891 2060 dbSNP
rs1309503435 2082 dbSNP
rs1350518579 2084 dbSNP
rs1222354567 2089 dbSNP
rs1280862235 2090 dbSNP
rs1313880652 2098 dbSNP
rs759609704 2101 dbSNP
rs1337210656 2102 dbSNP
rs901658690 2104 dbSNP
rs571317686 2105 dbSNP
rs55867216 2110 dbSNP
rs1049464455 2114 dbSNP
rs763636231 2121 dbSNP
rs930542531 2122 dbSNP
rs1485982577 2127 dbSNP
rs765455663 2128 dbSNP
rs1371656473 2136 dbSNP
rs1259527637 2138 dbSNP
rs1214621485 2142 dbSNP
rs1432038148 2147 dbSNP
rs1487972531 2159 dbSNP
rs1169683277 2160 dbSNP
rs1043769175 2167 dbSNP
rs1370758163 2174 dbSNP
rs898500420 2174 dbSNP
rs1404028392 2178 dbSNP
rs1037032038 2186 dbSNP
rs1369121460 2187 dbSNP
rs1012651942 2189 dbSNP
rs1294812026 2190 dbSNP
rs1285229159 2192 dbSNP
rs895424632 2195 dbSNP
rs372990211 2196 dbSNP
rs71123959 2196 dbSNP
rs912635478 2203 dbSNP
rs374718310 2213 dbSNP
rs180797404 2221 dbSNP
rs1057096288 2226 dbSNP
rs535360608 2229 dbSNP
rs1358979625 2235 dbSNP
rs1220553361 2236 dbSNP
rs1267225298 2237 dbSNP
rs1488864878 2251 dbSNP
rs1354708402 2252 dbSNP
rs1186392025 2255 dbSNP
rs764784000 2256 dbSNP
rs1284021119 2257 dbSNP
rs761934875 2261 dbSNP
rs1189611932 2269 dbSNP
rs918726008 2270 dbSNP
rs1423545449 2277 dbSNP
rs986988229 2287 dbSNP
rs115612673 2288 dbSNP
rs1457989920 2294 dbSNP
rs921412152 2296 dbSNP
rs940461626 2297 dbSNP
rs1437261344 2303 dbSNP
rs768855176 2304 dbSNP
rs1315999283 2306 dbSNP
rs1315132849 2308 dbSNP
rs1322602121 2311 dbSNP
rs908953222 2321 dbSNP
rs1491163283 2329 dbSNP
rs1491273936 2330 dbSNP
rs1344025688 2332 dbSNP
rs572271587 2335 dbSNP
rs984502280 2336 dbSNP
rs35965908 2342 dbSNP
rs1402137021 2344 dbSNP
rs1242847797 2349 dbSNP
rs1443202408 2350 dbSNP
rs1388096539 2355 dbSNP
rs1277558985 2357 dbSNP
rs1415483870 2361 dbSNP
rs1424096215 2362 dbSNP
rs953142465 2374 dbSNP
rs544856037 2376 dbSNP
rs190738359 2382 dbSNP
rs1458687201 2383 dbSNP
rs555905265 2389 dbSNP
rs1405016298 2395 dbSNP
rs1445508289 2399 dbSNP
rs1304416989 2423 dbSNP
rs539972057 2427 dbSNP
rs760795387 2437 dbSNP
rs1030751032 2445 dbSNP
rs1191338696 2452 dbSNP
rs913605239 2453 dbSNP
rs999310521 2454 dbSNP
rs1229510333 2458 dbSNP
rs987756006 2459 dbSNP
rs960470174 2463 dbSNP
rs1450124654 2464 dbSNP
rs968134946 2469 dbSNP
rs1238470910 2471 dbSNP
rs1022785639 2477 dbSNP
rs1034752462 2477 dbSNP
rs147318217 2484 dbSNP
rs1473297904 2488 dbSNP
rs1159318204 2489 dbSNP
rs969634270 2494 dbSNP
rs895111658 2503 dbSNP
rs1337331474 2505 dbSNP
rs1359542948 2506 dbSNP
rs1027449347 2509 dbSNP
rs995200040 2511 dbSNP
rs557385402 2516 dbSNP
rs1410493711 2520 dbSNP
rs1282775428 2524 dbSNP
rs1037063728 2528 dbSNP
rs1221447173 2529 dbSNP
rs1279698078 2539 dbSNP
rs539056345 2549 dbSNP
rs568803855 2553 dbSNP
rs897409358 2554 dbSNP
rs1363246586 2556 dbSNP
rs1037238177 2561 dbSNP
rs1483853391 2567 dbSNP
rs1182266466 2571 dbSNP
rs891107567 2573 dbSNP
rs941496077 2574 dbSNP
rs1329055638 2579 dbSNP
rs932714648 2582 dbSNP
rs1425558618 2585 dbSNP
rs775991464 2585 dbSNP
rs1409179787 2586 dbSNP
rs556998793 2601 dbSNP
rs1166537270 2606 dbSNP
rs115769518 2607 dbSNP
rs1430705978 2609 dbSNP
rs1302563245 2610 dbSNP
rs1043892497 2640 dbSNP
rs1396363561 2643 dbSNP
rs1049263605 2645 dbSNP
rs931678862 2647 dbSNP
rs1361922068 2650 dbSNP
rs1226604456 2653 dbSNP
rs1277295746 2653 dbSNP
rs921560084 2654 dbSNP
rs1343843081 2655 dbSNP
rs1409350221 2659 dbSNP
rs976027247 2662 dbSNP
rs376210193 2674 dbSNP
rs144098562 2680 dbSNP
rs1477073223 2685 dbSNP
rs1200850929 2694 dbSNP
rs988330724 2715 dbSNP
rs1247193733 2718 dbSNP
rs1448835260 2725 dbSNP
rs1252624565 2726 dbSNP
rs1186444324 2728 dbSNP
rs746424704 2732 dbSNP
rs1470132790 2734 dbSNP
rs1430567013 2735 dbSNP
rs960376619 2736 dbSNP
rs1388609167 2738 dbSNP
rs114822121 2741 dbSNP
rs1324325342 2747 dbSNP
rs1345107580 2755 dbSNP
rs1198374669 2761 dbSNP
rs527831767 2762 dbSNP
rs1366387865 2764 dbSNP
rs184895477 2773 dbSNP
rs1283259782 2776 dbSNP
rs1275708562 2782 dbSNP
rs1353881822 2787 dbSNP
rs1211077261 2793 dbSNP
rs1215832554 2794 dbSNP
rs1342181924 2795 dbSNP
rs1302281042 2799 dbSNP
rs1290054988 2803 dbSNP
rs969160434 2808 dbSNP
rs967833992 2811 dbSNP
rs1206746851 2816 dbSNP
rs1249621891 2818 dbSNP
rs1449871794 2829 dbSNP
rs1329094046 2845 dbSNP
rs1441198886 2857 dbSNP
rs1355099297 2859 dbSNP
rs1027933276 2860 dbSNP
rs1022393463 2865 dbSNP
rs1412837800 2866 dbSNP
rs1394514551 2867 dbSNP
rs1174315348 2871 dbSNP
rs11915062 2872 dbSNP
rs1323180322 2872 dbSNP
rs780926015 2873 dbSNP
rs140040703 2878 dbSNP
rs1246611648 2881 dbSNP
rs1284203125 2884 dbSNP
rs544606672 2886 dbSNP
rs1008789535 2887 dbSNP
rs891139012 2891 dbSNP
rs1465320088 2893 dbSNP
rs1199656711 2895 dbSNP
rs113582970 2903 dbSNP
rs1003538659 2904 dbSNP
rs561993980 2907 dbSNP
rs1411279772 2909 dbSNP
rs192311260 2909 dbSNP
rs1481132691 2913 dbSNP
rs1161529966 2915 dbSNP
rs573062199 2916 dbSNP
rs1015834931 2919 dbSNP
rs767367953 2919 dbSNP
rs577415825 2920 dbSNP
rs1005741736 2923 dbSNP
rs141192487 2924 dbSNP
rs888582986 2929 dbSNP
rs759331152 2930 dbSNP
rs545467031 2931 dbSNP
rs781077358 2932 dbSNP
rs754796820 2933 dbSNP
rs931682457 2934 dbSNP
rs754536384 2938 dbSNP
rs1373702078 2939 dbSNP
rs914045465 2942 dbSNP
rs1346900925 2946 dbSNP
rs1040048678 2954 dbSNP
rs1251331680 2959 dbSNP
rs1052645545 2960 dbSNP
rs201601808 2968 dbSNP
rs1252707640 2977 dbSNP
rs1433058052 2978 dbSNP
rs1197408634 2987 dbSNP
rs879749282 2987 dbSNP
rs939564690 2987 dbSNP
rs1299847784 2990 dbSNP
rs1427487386 2992 dbSNP
rs1309254298 2999 dbSNP
rs1373431879 3003 dbSNP
rs923879098 3004 dbSNP
rs751564961 3006 dbSNP
rs1374739999 3007 dbSNP
rs946562004 3026 dbSNP
rs1273733299 3027 dbSNP
rs980453283 3035 dbSNP
rs1207577839 3041 dbSNP
rs766376983 3044 dbSNP
rs990666617 3047 dbSNP
rs1208183373 3054 dbSNP
rs1270052695 3055 dbSNP
rs1378716283 3059 dbSNP
rs12956 3065 dbSNP
rs1420080740 3067 dbSNP
rs776828812 3067 dbSNP
rs1410553452 3069 dbSNP
rs1180462129 3070 dbSNP
rs189104072 3075 dbSNP
rs1456949454 3081 dbSNP
rs1291327871 3085 dbSNP
rs1392795203 3085 dbSNP
rs1441625372 3095 dbSNP
rs1393537363 3096 dbSNP
rs961885161 3098 dbSNP
rs1362778202 3102 dbSNP
rs148229620 3114 dbSNP
rs199605004 3117 dbSNP
rs754008782 3136 dbSNP
rs764078840 3137 dbSNP
rs369407447 3140 dbSNP
rs1015867518 3141 dbSNP
rs1267365792 3153 dbSNP
rs1258589371 3156 dbSNP
rs553255130 3162 dbSNP
rs760997640 3168 dbSNP
rs1208653371 3171 dbSNP
rs1214583252 3180 dbSNP
rs1466548534 3183 dbSNP
rs888621460 3190 dbSNP
rs1189668388 3194 dbSNP
rs11542656 3197 dbSNP
rs1028947816 3202 dbSNP
rs1014730048 3205 dbSNP
rs987425880 3206 dbSNP
rs1308929586 3208 dbSNP
rs997014963 3210 dbSNP
rs954603162 3217 dbSNP
rs1386418938 3226 dbSNP
rs1354804217 3229 dbSNP
rs1289294733 3240 dbSNP
rs1293767010 3241 dbSNP
rs545184525 3242 dbSNP
rs1040078139 3253 dbSNP
rs184354105 3254 dbSNP
rs1335579682 3255 dbSNP
rs1288529977 3260 dbSNP
rs879099447 3261 dbSNP
rs1454544389 3263 dbSNP
rs570623874 3294 dbSNP
rs899810057 3312 dbSNP
rs1347156997 3349 dbSNP
rs1331893676 3351 dbSNP
rs1209746327 3363 dbSNP
rs902155870 3369 dbSNP
rs1237329612 3370 dbSNP
rs551927254 3371 dbSNP
rs1179763937 3373 dbSNP
rs1482694076 3373 dbSNP
rs1257615072 3383 dbSNP
rs1022393472 3391 dbSNP
rs1157821298 3395 dbSNP
rs1010913156 3396 dbSNP
rs892639604 3400 dbSNP
rs1163204291 3402 dbSNP
rs1052548460 3403 dbSNP
rs1446037706 3409 dbSNP
rs1304828283 3420 dbSNP
rs1042288964 3424 dbSNP
rs946664559 3425 dbSNP
rs1286604225 3426 dbSNP
rs1331823473 3430 dbSNP
rs1224843715 3439 dbSNP
rs539899967 3443 dbSNP
rs1419229711 3448 dbSNP
rs1212738944 3456 dbSNP
rs947765069 3460 dbSNP
rs1485830483 3464 dbSNP
rs915155641 3466 dbSNP
rs192955063 3477 dbSNP
rs1475921171 3481 dbSNP
rs550942232 3483 dbSNP
rs928051333 3491 dbSNP
rs1177741541 3527 dbSNP
rs1424144508 3529 dbSNP
rs11542660 3530 dbSNP
rs940381844 3533 dbSNP
rs1486028740 3534 dbSNP
rs907745537 3535 dbSNP
rs1376287705 3539 dbSNP
rs982163393 3547 dbSNP
rs368886936 3551 dbSNP
rs961376681 3551 dbSNP
rs187845279 3568 dbSNP
rs954811362 3572 dbSNP
rs562055292 3582 dbSNP
rs1443514513 3592 dbSNP
rs1333794065 3598 dbSNP
rs546855863 3600 dbSNP
rs975038918 3602 dbSNP
rs1366161167 3607 dbSNP
rs1221288905 3615 dbSNP
rs775552648 3616 dbSNP
rs1348079628 3620 dbSNP
rs1235006269 3621 dbSNP
rs1324592847 3623 dbSNP
rs776616494 3632 dbSNP
rs953109506 3644 dbSNP
rs1295002299 3645 dbSNP
rs964087183 3648 dbSNP
rs1204662535 3656 dbSNP
rs1246025876 3662 dbSNP
rs1477039728 3675 dbSNP
rs1028559572 3680 dbSNP
rs1395473817 3685 dbSNP
rs1449022724 3686 dbSNP
rs1010983421 3689 dbSNP
rs1166984988 3699 dbSNP
rs1364426526 3709 dbSNP
rs1291947564 3717 dbSNP
rs768837777 3726 dbSNP
rs1410570813 3729 dbSNP
rs1421782170 3730 dbSNP
rs1348629363 3735 dbSNP
rs1461255028 3736 dbSNP
rs1395625219 3738 dbSNP
rs997443252 3739 dbSNP
rs965546866 3740 dbSNP
rs1364963399 3749 dbSNP
rs1227147358 3765 dbSNP
rs1294916806 3767 dbSNP
rs1167767042 3768 dbSNP
rs1288599587 3770 dbSNP
rs1449739844 3770 dbSNP
rs1215496144 3779 dbSNP
rs528686463 3781 dbSNP
rs1253357316 3785 dbSNP
rs1464293961 3790 dbSNP
rs182962585 3791 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ccgGGGUGGGGUCAGAg 5'
             :| |  ||| ||| 
Target 5' ---UCAAGACCAUUCUc 3'
 		1 - 14
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_012234 | 3UTR | AGGAUUGAAACAGUCUAUAAACUGUAUUUUUGGUCCAUCCAGGAAGCUAGUCCCUUGUUUCUCCUUUCUACAUGACAUUGCAGUGGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000477973.2 | 3UTR | UCAAGACCAUUCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000477973.2 | 3UTR | UCAAGACCAUUCUCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
66 hsa-miR-4463 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060168 UHMK1 U2AF homology motif kinase 1 2 2
MIRT096415 C5ORF22 chromosome 5 open reading frame 22 2 2
MIRT366792 GNL3L G protein nucleolar 3 like 2 6
MIRT448501 RYBP RING1 and YY1 binding protein 2 2
MIRT454909 SEPT8 septin 8 2 17
MIRT459019 UQCRH ubiquinol-cytochrome c reductase hinge protein 2 2
MIRT459809 POTED POTE ankyrin domain family member D 2 8
MIRT475351 IFNLR1 interferon lambda receptor 1 2 2
MIRT476621 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT479292 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT480204 CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 2 2
MIRT480765 BMP2 bone morphogenetic protein 2 2 2
MIRT481415 ASXL1 additional sex combs like 1, transcriptional regulator 2 2
MIRT482754 HES7 hes family bHLH transcription factor 7 2 10
MIRT483376 SPATA6 spermatogenesis associated 6 2 4
MIRT487803 GPR20 G protein-coupled receptor 20 2 4
MIRT493196 MID1IP1 MID1 interacting protein 1 2 2
MIRT495617 ZNF736 zinc finger protein 736 2 2
MIRT495977 TBC1D19 TBC1 domain family member 19 2 2
MIRT496914 RTKN rhotekin 2 2
MIRT497320 SH3BP5 SH3 domain binding protein 5 2 2
MIRT498993 HAT1 histone acetyltransferase 1 2 10
MIRT500660 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT507809 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT508170 FRK fyn related Src family tyrosine kinase 2 4
MIRT509524 INTU inturned planar cell polarity protein 2 8
MIRT509544 BTLA B and T lymphocyte associated 2 8
MIRT515760 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT516036 PTAFR platelet activating factor receptor 2 2
MIRT516935 THAP1 THAP domain containing 1 2 2
MIRT517672 TRIM72 tripartite motif containing 72 2 2
MIRT521149 SFT2D2 SFT2 domain containing 2 2 2
MIRT526292 KY kyphoscoliosis peptidase 2 2
MIRT526917 ZNF772 zinc finger protein 772 2 6
MIRT527796 KLRD1 killer cell lectin like receptor D1 2 2
MIRT529879 RBM43 RNA binding motif protein 43 2 2
MIRT535894 MLEC malectin 2 2
MIRT536651 INIP INTS3 and NABP interacting protein 2 2
MIRT537349 FKBP15 FK506 binding protein 15 2 2
MIRT539658 SERPINH1 serpin family H member 1 2 2
MIRT543388 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT546878 PURB purine rich element binding protein B 2 2
MIRT547980 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT552836 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT555426 PPIC peptidylprolyl isomerase C 2 2
MIRT559550 ARGLU1 arginine and glutamate rich 1 2 4
MIRT560476 ENSA endosulfine alpha 2 2
MIRT561483 TBC1D4 TBC1 domain family member 4 2 2
MIRT561571 SLC6A9 solute carrier family 6 member 9 2 2
MIRT563869 FAM206A family with sequence similarity 206 member A 2 2
MIRT568210 CAV1 caveolin 1 2 2
MIRT569740 GPR173 G protein-coupled receptor 173 2 2
MIRT570623 MAP1B microtubule associated protein 1B 2 2
MIRT570676 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT576586 Ptbp1 polypyrimidine tract binding protein 1 2 2
MIRT640732 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT643705 KIAA0586 KIAA0586 2 2
MIRT644333 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT670466 RSBN1L round spermatid basic protein 1 like 2 2
MIRT672558 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT685442 SLC10A6 solute carrier family 10 member 6 2 2
MIRT686803 SOX12 SRY-box 12 2 2
MIRT694912 THAP6 THAP domain containing 6 2 2
MIRT702222 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT735058 CYP19A1 cytochrome P450 family 19 subfamily A member 1 3 0
MIRT735059 ESR1 estrogen receptor 1 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4463 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4463 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4463 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-mir-4463 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4463 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4463 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-4463 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4463 Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-4463 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4463 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4463 Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4463 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-4463 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4463 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)

Error report submission