pre-miRNA Information
pre-miRNA hsa-mir-449b   
Genomic Coordinates chr5: 55170646 - 55170742
Description Homo sapiens miR-449b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-449b-5p
Sequence 16| AGGCAGUGUAUUGUUAGCUGGC |37
Evidence Experimental
Experiments Microarray
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN8871076 12 COSMIC
COSN17153496 22 COSMIC
COSN31576772 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1322925717 3 dbSNP
rs769526811 10 dbSNP
rs10061133 12 dbSNP
rs1431829587 13 dbSNP
rs778042202 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GMFB   
Synonyms GMF
Description glia maturation factor beta
Transcript NM_004124   
Expression
Putative miRNA Targets on GMFB
3'UTR of GMFB
(miRNA target sites are highlighted)
>GMFB|NM_004124|3'UTR
   1 TGTGAACTTCTGTGTTTCTAAAGTATTTATGTATTAACCTGACCATACTGGAATCAGACATAAATACTTATTTATGCCTA
  81 AAAATGCACTGTTACTTACAGTTTGTTTCCTGCAGTAAAGAAAAATTCTTCATTTGTGCAAAATTTGAACAAAGAGGAAA
 161 TCATCTTCATAGTAATGAAACTTTGTAAAGTGTTTCCTTATATTGGTAATTGTTAGGTGGACTACTTTTCTCCAGGGACT
 241 TTTTGCACTCTTGTGACTAATTTCTATAACTTATGGTTCGGAATTTGTTACTATTTACAGACACCATTGGAAAGTGGATA
 321 TATTAGATTGTGAGAGACAACAGTTGCCTCCTTTTGACAAATACTGGATATTAGCAGTTTATTTATGAAAATAGCGTATT
 401 ATCACTTGTCAAATCATTGAAATTCATTTGGGGTCAAAGACTTGAGTGACCCAGTATTGAGCCATGAATAATTTAGTGTA
 481 ACCTGTATTACAAGTACATTGATGAATTCTGTATCTTCTTTGGTTTCCTGTATCTTTTTAATCAAGTCTAGAAACTATGT
 561 TCATCAGTCACTCATTTTTAAGGTCGGGAGTTAGATTTTATGATAGAATTATGACTGTTAGCTTTTCTCCTTATAGCATC
 641 TTAGTCTTAGAAATTGGTGGGTTGTAATAATCAAGGGCTTCATTCCTTTTATGTCATTTCTAGACAGTTTTGAATCTAGG
 721 TTAATAACACTTTATTTATAAAGCACCTCAATGTCCTGTGAACACTAATTATTTTAAATGTGTTAATACTGTGCCTTTGA
 801 TTTGTTAGCTTTAAAGTTAGTTTAAGACTTTTACACTGCCAGTATTCCACATTTGGTGAAATTAATACTTTTTTAAAGGG
 881 TCCAAATAAAATAATTTTCTAATGTGTATATCTGAAATTTGTAATAAAATCAACTTCATATTTTAAAAATTCCAACTATC
 961 TGCTTGCATTGGTGAATATATGGCAGTCGAGAGTTATAATTTTGGGTATACTTGTGGTTAGTTTTGTGCCATAGGAAAAA
1041 ATTATCTTAAAACTTTGGCCATAGTTAATAACATTAACACTTCAATAGCAATCACATCTTATATCCTAAATGTCAGAAGA
1121 TATTCTGAACTGGATGCCTGAATAGTTAACTAAACCAGTCTTGTTAGATGATGGTACTCTTGGCATAAAGCGAGGATTCT
1201 GATATTTGGCATACTTGTAAAAACAAATACATAAGTAACCATTGAACATTAATTTGATAATAGGTCTAGAGACTCTAAAA
1281 ACTAACCAAACTTGGTGAGTGTATTCTTATATTAAGAATATCTTAGTCATCTCAAAACTAGCAAAATTTAAATTTTGGCA
1361 TGTTTTCCATTCATATGTTCTTTGCATTTTATTTTTGAGGTTTCTGTGAGAAGTAAAGATAGTTGGAATTTTTGCGATAT
1441 TGAATAGAACATCTTCTGTTCCCAACACTGTTTGGCTTCACTAATTTAGAAGTCAGGAAGCAATAGAAAGTTGGAGATGA
1521 GGAAGTGCTAGAGTAGGTGTTTGTTTTGGTTCTTGGAGGGAAAAGATTCTTTATTCCAATTTCCAGAGAGAAGAGAAAAC
1601 TCACCCAGGAAGTTTAAAAATTCTTTAAACAGGTATTTTGATATTGGAGAATAACATGCATATAATTCTGTAGGAATGCA
1681 CATGTAATCCAAGTGAGTGGAGAGTGTTTTTAATGTTTTTGAATGAAGGAAATGAGGTTTTGTTTCACCTGTTTTGCAGC
1761 AGTAAGAGAAACTAGTGCTGCAAGAATGTATTTTTTAATGAAGTTCCTTATTTTGTCTTGCATGTTTTAGTTTTGCTTAT
1841 TTTTAAATTTGGAGGTCCTCCATAATGTCAGATAATATTGACCTGCCATACGTTAGCACTCTTAGTTCCGCTACTGTCTT
1921 TAACAGGAGCAAAGAGCTGTGATAAACCATGCTTTTTTGAGCTTGTCTGACTCCTAATTAATAACATGTTTTTGGCAAGA
2001 CAACAGATTGAGGTTAGAGGATCAGTAGGACATTTTTATTCCATCTGTCCTATGGGGAAATTTACAAATCCCGTGCTCTA
2081 AAATGTTCTCAAACATTTATATAGATTTCCCTTTCATCTTACTAAATTTTGCATTGTTCTTTTCAAGTATGTTTCGTATT
2161 TACTGTCTTTTTTTCTGCCATTTCCCAAATAATAACTCCAGATTTCATAATTCCAGTTTTTACATTCCGTTATCTTTCTG
2241 GTACAACCATTCCCATTCAGCCTTAAATCTGAGTCCTTTTTAGCAGCAACTTTTTTCCTGGGATCCTCCTTCGTGGTCTT
2321 CTAAGTCAGTGTTAGTTTTGAAATTTTTGGCCCTGCATAAGTTCTGCATAGCATCTAATGTCAAAATAGAACCAACTGGT
2401 AATCACAGTATTATTTAGTGTGGTTTCCATGACAACAAAAATACATACGAAGAAAACTTCTCAGGTTACTATGCTGAAAT
2481 TCCAAAATGTCTGAGTTTTGAATAGTGATCACTTTGTTCTGGTATTGACGCAATTATATTAGGAAAAAAGTTGGTTGACT
2561 GTTTTTGTTTAATTGACTTCTAAAATGTTCAAATTGTCTAGTTCTAAAAGTTTACTAAATGCCTAGTGCAGTTAAACATA
2641 CTCTTGTTTAAGTGTGTGTTGCTAAATTTTTTACTGTCATTACTAAATAATCTGTGTGGCAAAATGTGTGTCAGCACTTT
2721 TCCCTCCTTTTTTATCTCCTATTTTCAGGAGTCAAATGTAGCCATAAACTGTATCCTTGTCTGACACTTTAGCTAAAAAT
2801 TTCCAGTTAGGGGAGTTTATTGCCAAATTAAATTTGGCTGTTCCCCCCAACCCATATAGATATTAAGGAAGGTGTACTTA
2881 AAAAATGTTTGGACTGCTTTTAAAACCTGAGCAATGTCATTAATCCATATGTGGACTAGTGATGAATAGATATTTTCATA
2961 AGAGTTTAAATGCTGATATTTGGTGGAAGTAGAGAGTAACTCATATTCTATCAATTCAAGTATTCTTACTATGGTTGCTT
3041 TCCCTATTTGTTCAATAGACTGATAATACTGGAATTTATAGAGTTTGAGCCATTACAACTTTTGTGAGGATGTGTTTCAA
3121 ACATTTCTGGACAAATCTTATTTTGTATTTCTGGAAGAATGTAGTAATCTTCTAGACCGCTTAAAACCAATGCTCCCAAG
3201 CTGAATATTCTTGAGAAATTTGTTTTTATTATGCCATTTGACATTTCAAATCAGTGCTCATATACAGTAAACTTGTGATA
3281 GAAATTGTATTTTATTGCTTTTTGGATTATAATTCATATAAATATAATTACTTGAATATTGTTTGAGATCATTAACATGC
3361 CAGGGCAGTTCCCACTGATTTAGATGGTCCAAGATAATCTCATTCAGGAGGCTTGAAACATTAATGGTTTAGTCTTGTGA
3441 ATTTTAACAGTTCTCTGTCATCGTTTAACAAAACCAACAACTGACACAACTCCTTAAGCTGTGGTTTCAGTCTCTGCTAG
3521 TTCATATTGCATGTTTATTTTGGACAGTCTTTTGTTAAGCATGGTGCTTGTACTGGTTTAAATAAAATGTTAACATT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgGUCGAUUGUU----AUGUGACGGa 5'
            :||:| | :|    ||||||||| 
Target 5' gtTAGTTTAAGACTTTTACACTGCCa 3'
816 - 841 158.00 -17.80
2
miRNA  3' cggucGAUUGUUAUGUGACGGa 5'
               |||| |||:|||||:: 
Target 5' tatgcCTAAAAATGCACTGTTa 3'
73 - 94 141.00 -13.00
3
miRNA  3' cgGUCGAU--UGUUAUGUGACGGa 5'
            |||:||  : |:| :|:|||| 
Target 5' tcCAGTTAGGGGAGTTTATTGCCa 3'
2802 - 2825 130.00 -18.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30142813 18 COSMIC
COSN1654117 19 COSMIC
COSN30492582 31 COSMIC
COSN31593904 33 COSMIC
COSN30522807 44 COSMIC
COSN30516604 87 COSMIC
COSN26548152 99 COSMIC
COSN29209942 102 COSMIC
COSN1654116 215 COSMIC
COSN31536148 216 COSMIC
COSN30543643 277 COSMIC
COSN31544176 670 COSMIC
COSN30173379 681 COSMIC
COSN26574181 789 COSMIC
COSN30159566 868 COSMIC
COSN6253933 953 COSMIC
COSN9615735 1058 COSMIC
COSN28201386 1093 COSMIC
COSN25916767 1214 COSMIC
COSN8845126 1710 COSMIC
COSN31518392 2456 COSMIC
COSN31551156 2526 COSMIC
COSN8588737 2587 COSMIC
COSN31485829 2668 COSMIC
COSN30165114 2699 COSMIC
COSN28716300 2782 COSMIC
COSN31485869 2798 COSMIC
COSN15662656 3003 COSMIC
COSN31535024 3179 COSMIC
COSN30174555 3247 COSMIC
COSN31608166 3281 COSMIC
COSN31520284 3444 COSMIC
COSN1654115 3463 COSMIC
COSN1654114 3511 COSMIC
COSN29809730 3601 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753326203 11 dbSNP
rs1472017487 12 dbSNP
rs376566387 20 dbSNP
rs756069684 24 dbSNP
rs752576949 25 dbSNP
rs767413305 27 dbSNP
rs759856873 28 dbSNP
rs774446977 33 dbSNP
rs373386829 38 dbSNP
rs773225455 42 dbSNP
rs1327217317 43 dbSNP
rs922226203 45 dbSNP
rs1420824747 48 dbSNP
rs774212905 49 dbSNP
rs1183992093 50 dbSNP
rs1227231400 50 dbSNP
rs1383004916 52 dbSNP
rs762279031 68 dbSNP
rs1340098750 71 dbSNP
rs1310773035 72 dbSNP
rs777047523 74 dbSNP
rs1383983173 76 dbSNP
rs976446573 76 dbSNP
rs942440670 80 dbSNP
rs911007831 81 dbSNP
rs1456092187 85 dbSNP
rs1307946454 94 dbSNP
rs1397753393 95 dbSNP
rs1278695612 99 dbSNP
rs1393677796 99 dbSNP
rs1309901978 101 dbSNP
rs190668804 106 dbSNP
rs952571482 125 dbSNP
rs777207318 128 dbSNP
rs558880647 132 dbSNP
rs972596732 152 dbSNP
rs3208987 155 dbSNP
rs375796629 159 dbSNP
rs1251672970 162 dbSNP
rs1025357860 171 dbSNP
rs1198680904 171 dbSNP
rs1012290540 185 dbSNP
rs1460958161 200 dbSNP
rs1184434387 201 dbSNP
rs1387377462 203 dbSNP
rs1447902889 222 dbSNP
rs1294621409 231 dbSNP
rs1168310039 232 dbSNP
rs537749943 234 dbSNP
rs1339505172 236 dbSNP
rs1301650392 243 dbSNP
rs1400870200 251 dbSNP
rs1032459158 266 dbSNP
rs1338153657 270 dbSNP
rs1000966883 274 dbSNP
rs1216763228 279 dbSNP
rs576618014 280 dbSNP
rs902652488 301 dbSNP
rs1411948509 303 dbSNP
rs1401488781 304 dbSNP
rs1230932663 307 dbSNP
rs1170546827 310 dbSNP
rs1464543431 317 dbSNP
rs1042584874 319 dbSNP
rs1186199515 320 dbSNP
rs1262832764 331 dbSNP
rs1430736978 332 dbSNP
rs1174563550 341 dbSNP
rs1377506675 353 dbSNP
rs1470594030 364 dbSNP
rs1188713530 365 dbSNP
rs1472546085 368 dbSNP
rs552079002 369 dbSNP
rs1041101106 377 dbSNP
rs1363808508 381 dbSNP
rs1384919581 391 dbSNP
rs1184261892 392 dbSNP
rs1300347344 394 dbSNP
rs1345997866 395 dbSNP
rs752620353 396 dbSNP
rs538787491 404 dbSNP
rs1265058740 412 dbSNP
rs1327213855 425 dbSNP
rs186323924 433 dbSNP
rs1048109605 438 dbSNP
rs1486981805 444 dbSNP
rs931078986 445 dbSNP
rs1315961957 475 dbSNP
rs1481019743 482 dbSNP
rs1202283914 484 dbSNP
rs1409083839 488 dbSNP
rs1275046459 489 dbSNP
rs918386389 491 dbSNP
rs972544147 496 dbSNP
rs1456068718 502 dbSNP
rs971050042 513 dbSNP
rs748165974 515 dbSNP
rs1286452726 518 dbSNP
rs991217333 519 dbSNP
rs1377827367 521 dbSNP
rs1307804938 522 dbSNP
rs779989212 524 dbSNP
rs1219668158 529 dbSNP
rs149112084 532 dbSNP
rs1000916542 537 dbSNP
rs1225359012 540 dbSNP
rs1250319035 542 dbSNP
rs1470084898 544 dbSNP
rs966786064 551 dbSNP
rs112867795 556 dbSNP
rs1421667794 557 dbSNP
rs997728171 557 dbSNP
rs1365959561 558 dbSNP
rs902080106 563 dbSNP
rs113608236 585 dbSNP
rs1166178267 586 dbSNP
rs1442881450 587 dbSNP
rs143996727 594 dbSNP
rs1411721886 596 dbSNP
rs889421792 597 dbSNP
rs1226794947 601 dbSNP
rs1048059112 605 dbSNP
rs1160471826 618 dbSNP
rs745954338 623 dbSNP
rs1272941282 625 dbSNP
rs1437718169 627 dbSNP
rs1205890303 637 dbSNP
rs1234083056 643 dbSNP
rs1482027066 652 dbSNP
rs1182580785 656 dbSNP
rs1470647338 661 dbSNP
rs1385407953 689 dbSNP
rs918376495 694 dbSNP
rs1037265922 703 dbSNP
rs552388297 708 dbSNP
rs140252707 713 dbSNP
rs1177743143 714 dbSNP
rs1172499961 716 dbSNP
rs1356353557 718 dbSNP
rs949278139 719 dbSNP
rs1336179672 720 dbSNP
rs779051387 730 dbSNP
rs1456320349 731 dbSNP
rs1254752952 740 dbSNP
rs1454811588 741 dbSNP
rs757489781 741 dbSNP
rs1339182084 746 dbSNP
rs1222225001 751 dbSNP
rs1320552461 755 dbSNP
rs1275789372 758 dbSNP
rs1310968494 762 dbSNP
rs1202410216 763 dbSNP
rs754109128 778 dbSNP
rs549670009 789 dbSNP
rs764555434 791 dbSNP
rs1186330400 801 dbSNP
rs1241276838 824 dbSNP
rs1475659361 836 dbSNP
rs1188193070 842 dbSNP
rs1422908003 846 dbSNP
rs1225021487 856 dbSNP
rs529753897 874 dbSNP
rs1353939053 898 dbSNP
rs756552031 902 dbSNP
rs1471065926 903 dbSNP
rs990720881 904 dbSNP
rs1326195531 910 dbSNP
rs959558489 920 dbSNP
rs73273163 921 dbSNP
rs1344126740 924 dbSNP
rs560996801 929 dbSNP
rs1263190524 930 dbSNP
rs377130748 938 dbSNP
rs1325125490 962 dbSNP
rs1238407015 968 dbSNP
rs753305424 974 dbSNP
rs1283195595 979 dbSNP
rs1373658380 981 dbSNP
rs767130957 982 dbSNP
rs1447235478 984 dbSNP
rs966776190 988 dbSNP
rs117012630 990 dbSNP
rs1480041541 993 dbSNP
rs1436431914 996 dbSNP
rs1348149462 997 dbSNP
rs1430067207 1008 dbSNP
rs1320344124 1012 dbSNP
rs1420428300 1013 dbSNP
rs1379906176 1024 dbSNP
rs998075606 1026 dbSNP
rs1364147816 1030 dbSNP
rs966213995 1033 dbSNP
rs1437520313 1040 dbSNP
rs115305430 1044 dbSNP
rs1007777323 1045 dbSNP
rs888033804 1048 dbSNP
rs1350894454 1060 dbSNP
rs1206552030 1067 dbSNP
rs17253480 1079 dbSNP
rs995170134 1085 dbSNP
rs896899290 1086 dbSNP
rs1488106257 1087 dbSNP
rs766091535 1096 dbSNP
rs1482034110 1097 dbSNP
rs1036808875 1102 dbSNP
rs1363320374 1103 dbSNP
rs544750012 1105 dbSNP
rs1470620326 1108 dbSNP
rs762708121 1130 dbSNP
rs56035941 1144 dbSNP
rs1383776148 1145 dbSNP
rs1217312172 1161 dbSNP
rs1304148565 1168 dbSNP
rs1488362714 1191 dbSNP
rs1390200431 1200 dbSNP
rs1327545712 1201 dbSNP
rs1335885731 1209 dbSNP
rs949169167 1212 dbSNP
rs896284570 1219 dbSNP
rs189749988 1223 dbSNP
rs1246353301 1231 dbSNP
rs1055366653 1239 dbSNP
rs1284791419 1241 dbSNP
rs937906775 1243 dbSNP
rs565482320 1246 dbSNP
rs1350449876 1250 dbSNP
rs1249866922 1252 dbSNP
rs1438529296 1256 dbSNP
rs186079674 1261 dbSNP
rs1184237321 1264 dbSNP
rs1241463746 1269 dbSNP
rs925224160 1278 dbSNP
rs1164568323 1282 dbSNP
rs1387498681 1282 dbSNP
rs1460899948 1288 dbSNP
rs1167886678 1291 dbSNP
rs1396586545 1303 dbSNP
rs1392565998 1309 dbSNP
rs1334126886 1318 dbSNP
rs181264140 1325 dbSNP
rs555326841 1332 dbSNP
rs1316860773 1333 dbSNP
rs913910093 1337 dbSNP
rs1226596233 1368 dbSNP
rs1272496940 1373 dbSNP
rs1341409192 1385 dbSNP
rs1400628910 1400 dbSNP
rs1261378003 1405 dbSNP
rs976163798 1406 dbSNP
rs761820871 1415 dbSNP
rs1258667543 1418 dbSNP
rs200146109 1435 dbSNP
rs1436843743 1436 dbSNP
rs1017733294 1440 dbSNP
rs1374071255 1458 dbSNP
rs1464005303 1462 dbSNP
rs986744849 1465 dbSNP
rs1404779740 1466 dbSNP
rs1469965428 1468 dbSNP
rs952291298 1470 dbSNP
rs1359583637 1482 dbSNP
rs1027893012 1487 dbSNP
rs1296036299 1496 dbSNP
rs189772591 1500 dbSNP
rs1432453946 1503 dbSNP
rs995117914 1504 dbSNP
rs1322971517 1513 dbSNP
rs1204540912 1521 dbSNP
rs565610741 1524 dbSNP
rs1485018131 1526 dbSNP
rs896805062 1531 dbSNP
rs1262891798 1533 dbSNP
rs1015680879 1545 dbSNP
rs1195766549 1553 dbSNP
rs1013295831 1556 dbSNP
rs1427978168 1558 dbSNP
rs1261872704 1559 dbSNP
rs1177989313 1564 dbSNP
rs1343010136 1567 dbSNP
rs545385619 1569 dbSNP
rs1289184681 1572 dbSNP
rs1386931111 1577 dbSNP
rs1402995701 1583 dbSNP
rs1282638616 1588 dbSNP
rs576684186 1594 dbSNP
rs1256267524 1598 dbSNP
rs1224127393 1618 dbSNP
rs1209850531 1621 dbSNP
rs1303539718 1623 dbSNP
rs1315300659 1626 dbSNP
rs937852537 1627 dbSNP
rs563092627 1642 dbSNP
rs1043636289 1660 dbSNP
rs1220884723 1664 dbSNP
rs945293970 1670 dbSNP
rs1490658745 1692 dbSNP
rs1219817751 1701 dbSNP
rs543129009 1704 dbSNP
rs368138563 1708 dbSNP
rs1416748731 1713 dbSNP
rs532043085 1714 dbSNP
rs1380162758 1721 dbSNP
rs1418131757 1722 dbSNP
rs1159435554 1728 dbSNP
rs572522750 1732 dbSNP
rs944800949 1735 dbSNP
rs1357215149 1742 dbSNP
rs1366069965 1743 dbSNP
rs761212284 1744 dbSNP
rs1295338699 1752 dbSNP
rs910665269 1761 dbSNP
rs554164424 1764 dbSNP
rs539147699 1769 dbSNP
rs545770216 1773 dbSNP
rs1291551545 1775 dbSNP
rs952240469 1775 dbSNP
rs1190836276 1785 dbSNP
rs1224496269 1790 dbSNP
rs1027790314 1797 dbSNP
rs972252351 1806 dbSNP
rs1480064802 1822 dbSNP
rs1239557484 1833 dbSNP
rs1442428715 1850 dbSNP
rs962618040 1854 dbSNP
rs571617308 1867 dbSNP
rs549969530 1876 dbSNP
rs1406984576 1887 dbSNP
rs1168317184 1888 dbSNP
rs142527461 1891 dbSNP
rs1441490594 1891 dbSNP
rs76866484 1892 dbSNP
rs1256405707 1905 dbSNP
rs1379349844 1908 dbSNP
rs1180929740 1909 dbSNP
rs534242119 1910 dbSNP
rs1384047809 1913 dbSNP
rs1260422353 1916 dbSNP
rs1271576117 1925 dbSNP
rs1033875735 1947 dbSNP
rs146658895 1950 dbSNP
rs1317814836 1959 dbSNP
rs1182641085 1965 dbSNP
rs1256790214 1976 dbSNP
rs1235204356 1983 dbSNP
rs1322425741 1985 dbSNP
rs1473686574 1986 dbSNP
rs903665478 1987 dbSNP
rs1418618795 1990 dbSNP
rs1410499621 1999 dbSNP
rs1171417538 2005 dbSNP
rs1394537831 2006 dbSNP
rs1402615898 2011 dbSNP
rs548907250 2022 dbSNP
rs1336399791 2025 dbSNP
rs56140796 2027 dbSNP
rs377465091 2032 dbSNP
rs1043581249 2039 dbSNP
rs1009453559 2052 dbSNP
rs892410672 2053 dbSNP
rs1040371989 2065 dbSNP
rs867528244 2072 dbSNP
rs910623231 2073 dbSNP
rs778992027 2078 dbSNP
rs1202622335 2083 dbSNP
rs1263311143 2084 dbSNP
rs1443788810 2085 dbSNP
rs1168517872 2097 dbSNP
rs930744640 2103 dbSNP
rs527576298 2111 dbSNP
rs1475689030 2113 dbSNP
rs559720163 2133 dbSNP
rs577969865 2155 dbSNP
rs757436577 2156 dbSNP
rs369004706 2158 dbSNP
rs1403101264 2167 dbSNP
rs1416412351 2174 dbSNP
rs972241017 2175 dbSNP
rs1345010644 2180 dbSNP
rs1401138587 2184 dbSNP
rs962319658 2186 dbSNP
rs1421669395 2192 dbSNP
rs917514670 2194 dbSNP
rs1239665839 2195 dbSNP
rs1274956077 2198 dbSNP
rs991826464 2207 dbSNP
rs1221764850 2216 dbSNP
rs1283260866 2222 dbSNP
rs1468281150 2228 dbSNP
rs1218689209 2229 dbSNP
rs533061760 2232 dbSNP
rs1490167966 2246 dbSNP
rs1198738595 2248 dbSNP
rs1378328019 2250 dbSNP
rs1179652321 2258 dbSNP
rs1457648205 2260 dbSNP
rs1236829669 2263 dbSNP
rs1407697979 2268 dbSNP
rs1420627799 2270 dbSNP
rs1212153341 2272 dbSNP
rs34994744 2282 dbSNP
rs1488827365 2288 dbSNP
rs116684228 2289 dbSNP
rs777986212 2291 dbSNP
rs1404902149 2297 dbSNP
rs1033364312 2309 dbSNP
rs567079146 2312 dbSNP
rs373227185 2313 dbSNP
rs1001914979 2319 dbSNP
rs1241966297 2329 dbSNP
rs553814748 2331 dbSNP
rs1375895663 2332 dbSNP
rs1223186333 2333 dbSNP
rs376305400 2339 dbSNP
rs1453457633 2342 dbSNP
rs563065044 2350 dbSNP
rs1232446296 2353 dbSNP
rs143319681 2355 dbSNP
rs1391423879 2357 dbSNP
rs1383833392 2359 dbSNP
rs1040721403 2375 dbSNP
rs1292402633 2378 dbSNP
rs1008826040 2384 dbSNP
rs1455989881 2396 dbSNP
rs753006589 2415 dbSNP
rs1407657068 2419 dbSNP
rs1327609401 2420 dbSNP
rs1377133973 2428 dbSNP
rs1448561927 2429 dbSNP
rs889089493 2434 dbSNP
rs1381849400 2438 dbSNP
rs1381763355 2443 dbSNP
rs543349103 2448 dbSNP
rs113526277 2449 dbSNP
rs1439396028 2456 dbSNP
rs920721051 2465 dbSNP
rs1036472512 2466 dbSNP
rs1458363332 2471 dbSNP
rs1241682655 2472 dbSNP
rs768078059 2499 dbSNP
rs572738621 2502 dbSNP
rs1370637434 2504 dbSNP
rs1452673956 2515 dbSNP
rs917438173 2520 dbSNP
rs554224146 2527 dbSNP
rs1400456552 2529 dbSNP
rs1208133026 2530 dbSNP
rs958989449 2532 dbSNP
rs1404915463 2547 dbSNP
rs1489346094 2549 dbSNP
rs1286938070 2551 dbSNP
rs1396327070 2557 dbSNP
rs1314644365 2561 dbSNP
rs1324561045 2563 dbSNP
rs1226661535 2573 dbSNP
rs1277607888 2597 dbSNP
rs1318783248 2605 dbSNP
rs371184357 2608 dbSNP
rs1200749299 2617 dbSNP
rs1261436552 2618 dbSNP
rs926243219 2650 dbSNP
rs867321397 2652 dbSNP
rs1201349853 2658 dbSNP
rs1216203426 2658 dbSNP
rs1258729696 2660 dbSNP
rs1427237789 2660 dbSNP
rs377474441 2661 dbSNP
rs1352647631 2662 dbSNP
rs1478483158 2665 dbSNP
rs980467090 2667 dbSNP
rs112449157 2702 dbSNP
rs545047338 2706 dbSNP
rs1466248339 2717 dbSNP
rs1304343196 2730 dbSNP
rs1382558940 2741 dbSNP
rs1381579719 2743 dbSNP
rs1298799232 2750 dbSNP
rs1196813941 2758 dbSNP
rs1331604027 2769 dbSNP
rs1342310401 2775 dbSNP
rs1220480647 2790 dbSNP
rs1281490426 2793 dbSNP
rs1311778616 2796 dbSNP
rs1300573724 2798 dbSNP
rs1022076661 2804 dbSNP
rs34985663 2814 dbSNP
rs1384504301 2815 dbSNP
rs1264443241 2827 dbSNP
rs987977808 2828 dbSNP
rs1196583777 2835 dbSNP
rs956715566 2836 dbSNP
rs1433375205 2837 dbSNP
rs1177871989 2840 dbSNP
rs181402411 2843 dbSNP
rs1009188377 2845 dbSNP
rs1298390936 2847 dbSNP
rs889068699 2848 dbSNP
rs1028949993 2849 dbSNP
rs1358291432 2850 dbSNP
rs1403052970 2856 dbSNP
rs1301347250 2859 dbSNP
rs1174647214 2863 dbSNP
rs1387551019 2874 dbSNP
rs1303602056 2901 dbSNP
rs1315353792 2909 dbSNP
rs1478600679 2919 dbSNP
rs1287213186 2921 dbSNP
rs1377547684 2923 dbSNP
rs994823177 2925 dbSNP
rs1481236891 2926 dbSNP
rs899244281 2936 dbSNP
rs1245618248 2939 dbSNP
rs1488556346 2944 dbSNP
rs113465345 2954 dbSNP
rs755575324 2962 dbSNP
rs751084801 2964 dbSNP
rs1438733123 2971 dbSNP
rs184608498 2976 dbSNP
rs1178968454 2978 dbSNP
rs895933086 2988 dbSNP
rs567395094 2989 dbSNP
rs139510972 2996 dbSNP
rs1164082223 3010 dbSNP
rs766036499 3011 dbSNP
rs1487412288 3014 dbSNP
rs927569763 3022 dbSNP
rs1446379088 3026 dbSNP
rs533842911 3026 dbSNP
rs1201946692 3027 dbSNP
rs1310407535 3027 dbSNP
rs1379659303 3028 dbSNP
rs1345465167 3029 dbSNP
rs1255266650 3030 dbSNP
rs373185583 3033 dbSNP
rs566392541 3034 dbSNP
rs946392542 3035 dbSNP
rs1249137708 3041 dbSNP
rs1457024185 3051 dbSNP
rs1198929492 3052 dbSNP
rs1239772270 3053 dbSNP
rs1442484887 3054 dbSNP
rs150669728 3055 dbSNP
rs532815390 3056 dbSNP
rs1425505446 3058 dbSNP
rs1166974072 3060 dbSNP
rs1398250965 3062 dbSNP
rs956482295 3072 dbSNP
rs1134761 3073 dbSNP
rs550453083 3078 dbSNP
rs987363377 3080 dbSNP
rs1284006839 3089 dbSNP
rs953280697 3099 dbSNP
rs528938703 3106 dbSNP
rs1230584394 3111 dbSNP
rs1292787556 3116 dbSNP
rs772987802 3118 dbSNP
rs1326294106 3120 dbSNP
rs1316836443 3123 dbSNP
rs1198871887 3125 dbSNP
rs1028897495 3128 dbSNP
rs541316339 3136 dbSNP
rs994727062 3146 dbSNP
rs1415345817 3156 dbSNP
rs1209098427 3164 dbSNP
rs1237886996 3172 dbSNP
rs1484176687 3173 dbSNP
rs899149172 3178 dbSNP
rs1421555633 3179 dbSNP
rs569475294 3189 dbSNP
rs1171485012 3190 dbSNP
rs1426003712 3192 dbSNP
rs1413004804 3193 dbSNP
rs764806435 3195 dbSNP
rs1005343135 3199 dbSNP
rs1450816002 3201 dbSNP
rs1296953576 3202 dbSNP
rs895935051 3205 dbSNP
rs1425020702 3217 dbSNP
rs1340453642 3219 dbSNP
rs1218666364 3221 dbSNP
rs1193034050 3231 dbSNP
rs1057482892 3239 dbSNP
rs1218320390 3248 dbSNP
rs937515615 3249 dbSNP
rs1476914287 3250 dbSNP
rs906100253 3260 dbSNP
rs1188509518 3262 dbSNP
rs1043299520 3265 dbSNP
rs761614669 3273 dbSNP
rs1255247552 3280 dbSNP
rs947635011 3284 dbSNP
rs776436368 3287 dbSNP
rs914868600 3292 dbSNP
rs561477651 3298 dbSNP
rs1157260716 3303 dbSNP
rs1319877678 3304 dbSNP
rs1258708896 3312 dbSNP
rs1299458896 3316 dbSNP
rs1328919523 3320 dbSNP
rs1435291030 3324 dbSNP
rs1275015106 3327 dbSNP
rs1369289026 3329 dbSNP
rs935075226 3331 dbSNP
rs543212169 3349 dbSNP
rs911671353 3356 dbSNP
rs528014385 3357 dbSNP
rs1217471281 3359 dbSNP
rs148591944 3367 dbSNP
rs1288251943 3378 dbSNP
rs1450002001 3379 dbSNP
rs369926027 3380 dbSNP
rs1448341412 3384 dbSNP
rs953188043 3392 dbSNP
rs868216402 3396 dbSNP
rs1177130627 3398 dbSNP
rs35567337 3405 dbSNP
rs1339555850 3411 dbSNP
rs1335103490 3412 dbSNP
rs545669101 3413 dbSNP
rs973255986 3424 dbSNP
rs1404172379 3439 dbSNP
rs577989901 3455 dbSNP
rs1223355069 3458 dbSNP
rs1323683685 3460 dbSNP
rs556517199 3462 dbSNP
rs544383904 3463 dbSNP
rs573757165 3477 dbSNP
rs1377455638 3487 dbSNP
rs1242214869 3499 dbSNP
rs1416087458 3518 dbSNP
rs1163997547 3526 dbSNP
rs1472581975 3528 dbSNP
rs1290737887 3534 dbSNP
rs1453508607 3549 dbSNP
rs1015332303 3550 dbSNP
rs1366984393 3554 dbSNP
rs1440639009 3567 dbSNP
rs1180902870 3589 dbSNP
rs112946097 3595 dbSNP
rs1472772234 3602 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000358056.3 | 3UTR | UUAAGACUUUUACACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000358056.3 | 3UTR | UUAAGACUUUUACAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.617 6.6e-4 -0.548 2.8e-3 24 Click to see details
GSE19783 ER- ER- breast cancer 0.31 2.7e-3 0.208 3.3e-2 79 Click to see details
GSE19536 Breast cancer 0.228 1.1e-2 0.144 7.6e-2 100 Click to see details
GSE26953 Aortic valvular endothelial cells 0.446 1.4e-2 0.490 7.5e-3 24 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.637 4.5e-2 0.786 1.0e-2 8 Click to see details
GSE17306 Multiple myeloma 0.241 4.8e-2 0.366 4.9e-3 49 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.276 9.1e-2 0.240 1.2e-1 25 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.272 9.4e-2 -0.027 4.5e-1 25 Click to see details
GSE21849 B cell lymphoma -0.244 1.0e-1 -0.068 3.6e-1 29 Click to see details
GSE38226 Liver fibrosis 0.232 1.6e-1 0.219 1.7e-1 21 Click to see details
GSE28260 Renal cortex and medulla 0.2 2.6e-1 0.104 3.7e-1 13 Click to see details
GSE32688 Pancreatic cancer -0.107 2.8e-1 -0.161 1.9e-1 32 Click to see details
GSE14794 Lymphoblastoid cells -0.052 3.1e-1 -0.113 1.4e-1 90 Click to see details
GSE27834 Pluripotent stem cells 0.125 3.2e-1 0.156 2.8e-1 16 Click to see details
GSE21687 Ependynoma primary tumors -0.054 3.4e-1 -0.110 1.9e-1 64 Click to see details
GSE19350 CNS germ cell tumors 0.136 3.4e-1 0.210 2.6e-1 12 Click to see details
GSE19783 ER+ ER+ breast cancer -0.089 3.5e-1 -0.299 1.0e-1 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.051 4.2e-1 -0.567 4.6e-3 20 Click to see details
GSE17498 Multiple myeloma -0.023 4.4e-1 -0.221 8.5e-2 40 Click to see details
GSE42095 Differentiated embryonic stem cells -0.021 4.6e-1 -0.192 1.9e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUSC 0.638 0.18 0.600 0.2 4 Click to see details
UCEC 0.326 0.22 0.429 0.14 8 Click to see details
BRCA -0.298 0.35 0.000 0.5 4 Click to see details
THCA 0.435 0.36 0.500 0.33 3 Click to see details
THCA 0.435 0.36 0.500 0.33 3 Click to see details
THCA 0.435 0.36 0.500 0.33 3 Click to see details
THCA 0.435 0.36 0.500 0.33 3 Click to see details
THCA 0.435 0.36 0.500 0.33 3 Click to see details
109 hsa-miR-449b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006349 SIRT1 sirtuin 1 2 1
MIRT006350 CCNE2 cyclin E2 4 3
MIRT006351 MET MET proto-oncogene, receptor tyrosine kinase 2 1
MIRT006352 GMNN geminin, DNA replication inhibitor 2 1
MIRT006353 HDAC1 histone deacetylase 1 2 1
MIRT016137 CDK4 cyclin dependent kinase 4 1 1
MIRT016138 CDC25A cell division cycle 25A 2 1
MIRT016139 CDK6 cyclin dependent kinase 6 4 3
MIRT057740 ZDHHC16 zinc finger DHHC-type containing 16 2 2
MIRT078636 FAM104A family with sequence similarity 104 member A 2 2
MIRT100407 HSPA1B heat shock protein family A (Hsp70) member 1B 2 2
MIRT115552 MAZ MYC associated zinc finger protein 2 2
MIRT130146 TXNIP thioredoxin interacting protein 2 4
MIRT142254 DCTN5 dynactin subunit 5 2 2
MIRT143724 CCL22 C-C motif chemokine ligand 22 2 2
MIRT168101 E2F3 E2F transcription factor 3 2 2
MIRT169809 GIGYF1 GRB10 interacting GYF protein 1 2 4
MIRT183694 MDM4 MDM4, p53 regulator 2 2
MIRT198922 SMAD4 SMAD family member 4 2 2
MIRT202950 TSN translin 2 4
MIRT221565 CBX3 chromobox 3 2 2
MIRT253418 EVI5L ecotropic viral integration site 5 like 2 2
MIRT294759 ZNF551 zinc finger protein 551 2 4
MIRT307053 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT331273 TM9SF3 transmembrane 9 superfamily member 3 2 6
MIRT372293 UBXN2B UBX domain protein 2B 2 2
MIRT374317 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT445817 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT447158 MFSD8 major facilitator superfamily domain containing 8 2 2
MIRT447823 CTIF cap binding complex dependent translation initiation factor 2 2
MIRT448798 GMFB glia maturation factor beta 2 2
MIRT451580 HIRIP3 HIRA interacting protein 3 2 2
MIRT452679 GPR156 G protein-coupled receptor 156 2 2
MIRT453158 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT453634 SLC4A2 solute carrier family 4 member 2 2 2
MIRT455384 PLA2G2D phospholipase A2 group IID 2 2
MIRT456958 SPAM1 sperm adhesion molecule 1 2 2
MIRT462739 EFNB1 ephrin B1 2 2
MIRT464321 UST uronyl 2-sulfotransferase 2 2
MIRT465641 TNRC18P2 trinucleotide repeat containing 18 pseudogene 2 2 10
MIRT466748 SYNGR2 synaptogyrin 2 2 2
MIRT468345 SF3B3 splicing factor 3b subunit 3 2 2
MIRT469324 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT474361 KMT2D lysine methyltransferase 2D 2 2
MIRT475316 IFNLR1 interferon lambda receptor 1 2 2
MIRT477759 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT477824 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT478265 DDX19B DEAD-box helicase 19B 2 2
MIRT481042 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT481289 ATXN1L ataxin 1 like 2 2
MIRT482730 COPZ1 coatomer protein complex subunit zeta 1 2 2
MIRT488780 CYTH3 cytohesin 3 2 2
MIRT489578 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489659 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT490527 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492949 NEUROD2 neuronal differentiation 2 2 2
MIRT493154 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT493845 FOXN3 forkhead box N3 2 4
MIRT494743 ARHGAP1 Rho GTPase activating protein 1 2 6
MIRT496491 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT503312 FICD FIC domain containing 2 4
MIRT503507 ZNF623 zinc finger protein 623 2 2
MIRT504182 FAM127B retrotransposon Gag like 8A 2 2
MIRT505010 ZNF644 zinc finger protein 644 2 2
MIRT505352 TMEM167A transmembrane protein 167A 2 2
MIRT505645 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT505710 SESN2 sestrin 2 2 2
MIRT505777 SATB2 SATB homeobox 2 2 6
MIRT506208 PHF19 PHD finger protein 19 2 2
MIRT506251 PEG10 paternally expressed 10 2 2
MIRT507786 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT508005 BCL2L13 BCL2 like 13 2 4
MIRT508857 ZRSR1 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 1 2 4
MIRT510546 XBP1P1 X-box binding protein 1 pseudogene 1 2 4
MIRT511892 GAS1 growth arrest specific 1 2 6
MIRT512907 UBL4A ubiquitin like 4A 2 2
MIRT513600 VPS37B VPS37B, ESCRT-I subunit 2 2
MIRT521241 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT521321 RRAGD Ras related GTP binding D 2 4
MIRT525281 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT528650 RWDD2A RWD domain containing 2A 2 4
MIRT535101 PODXL podocalyxin like 2 2
MIRT547752 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT547865 HSPA13 heat shock protein family A (Hsp70) member 13 2 2
MIRT549170 BMP3 bone morphogenetic protein 3 2 2
MIRT550115 SLC35G2 solute carrier family 35 member G2 2 2
MIRT556097 MOAP1 modulator of apoptosis 1 2 2
MIRT557172 HOXA13 homeobox A13 2 2
MIRT557422 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT557931 FAM73A mitoguardin 1 2 2
MIRT568804 VPS37D VPS37D, ESCRT-I subunit 2 2
MIRT571326 TPCN2 two pore segment channel 2 2 2
MIRT572598 PAPLN papilin, proteoglycan like sulfated glycoprotein 2 2
MIRT573437 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT574092 VASN vasorin 2 2
MIRT608688 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT608800 ITGA11 integrin subunit alpha 11 2 4
MIRT610332 SSX5 SSX family member 5 2 2
MIRT613158 DDA1 DET1 and DDB1 associated 1 2 2
MIRT625407 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT636603 CLIC5 chloride intracellular channel 5 2 2
MIRT638573 IER5 immediate early response 5 2 2
MIRT639686 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT677979 ITGB3 integrin subunit beta 3 2 2
MIRT685217 POTED POTE ankyrin domain family member D 2 2
MIRT702570 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT706259 MKLN1 muskelin 1 2 2
MIRT734675 HMGB1 high mobility group box 1 3 0
MIRT736369 HSPA1A heat shock protein family A (Hsp70) member 1A 1 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-449b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-449b Doxorubicin approved 31703 Quantitative real-time PCR ovarian carcinoma cell line A2780 cells 22340095 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-449b Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-449b Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-449b-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SUIT-2, CAPAN-1)
hsa-miR-449b-5p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-449b-5p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-449b-5p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-449b-5p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-449b-5p Panobinostat 6918837 NSC761190 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-449b-5p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-449b-5p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-449b-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-449b-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-449b-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (HeyA8)
hsa-miR-449b-5p Paclitaxel 36314 NSC125973 approved resistant cell line (SKVO3ip1)
hsa-miR-449b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-449b-5p Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-449b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-449b-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-449b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-449b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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