miRTarBase - #MIRT448834


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pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FGD4   
Synonyms CMT4H, FRABP, ZFYVE6
Description FYVE, RhoGEF and PH domain containing 4
Transcript NM_139241   
Expression
Putative miRNA Targets on FGD4
3'UTR of FGD4
(miRNA target sites are highlighted)		 
>FGD4|NM_139241|3'UTR
   1 ACTCCTCCAGGACCAGCCATGGTGTGGAGGTCTCAGGACTTACAGCTCAAGACATTCCCAGCTCTTCTTACACATCTGCT
  81 AGCACTTTATGTTGAAAAATATAGGCCCATAAATGCATCTTTTGAGGACTATTTTCCTATGTTTATGTACTCTTAGTGAA
 161 ATTAGTGTGCAGAGTCATTCTACCGATAAAGTTTTGAAATAATGTGAAAACTGGAGCATTTTTTGAGCTATTCCTTGAAT
 241 ATGTGCTTTTTTGTCTTGAAGAAATGGTGTATCAATTGATTCTGTCACCGTCAGGTTAGAATGAGCACTTCCATTTAAGA
 321 AATCCTTTCATGTCTTCTTCTCTTTCACATGTAGGACCTGGAACAGTTTGAAAGATATACCTCCATGTTGCCAAAATAGA
 401 TCCATGGTGAAAAATACAGGGACAGTTGAGGCTATTGTATTAACTTATTTAATTTAGTTTATAAATCTCTAGCTGCATAA
 481 ATGATGTCTGTTCTTTTAAAACAAAAGAAAAAGGACAAATTGTTGGTGTTCAGATTTCCGATTTATAAAGAAAAGATAAC
 561 TTGTTTTTGTAGAAATACTCCTAAGAATGTCTTAAGTATATAGCAATTATGTATATATAGTATTAAATATATATATTATA
 641 CATGCTTTTAGGTTCACATTCATCTCTAATTTATTTTTTAAATATAAAGCATGGTTTATCGTGGAATTGAGCAATGTTCT
 721 AAACTGAAGAAATGTTTTGGTGATTTATGTTTTGCTGATTGGCATTTGAGGGTATTGATATTTTTATAATAAGCGGTAAT
 801 TTATGTGGCATGGGATATATTTGTGAATTCCAACAGTACTTTTAAAGTACCATTTTTTGTTTCTGTGCCTATTTAAAACA
 881 GTGCCTCTCTTAGAAGGTGCTATTAATATAAGATGAGGGTTCAGTTAATGCTTCAGTCTTGATTATTCTAAGATTAAAGT
 961 GCATTTTGGTCACTGGGACAGTCAAAGTCATACAGGTTATTTTACCGTTTACAATCCTATAATTATTGCAGTAGTTAACA
1041 TCAGCATGTACAAACATTTTCACCAAAACCCAAACTTTATGAGACACCTGACCTTTTACAGAACTAGGATATGTGGAAAC
1121 CACATTTATCGTAATGTTTTTCTTTTCCGTAAGATAATCGAGCATGGTTAAATAAGGTCTCTATATAATGAACACTTAAG
1201 ATAACTGTATGGGCCTTTTCCTTTGTCGGAATGAAACAAAATCCACATGTGATAACCTATGTTTGGGGTGGGGGCTGGTC
1281 ACATGATTCCTTGTCATGAAGGCTGCTCTTCACTCTTTTGTACTTGTGATTAAAATCTCACACTAAGTTTACTATTTAAC
1361 TTAATCCTTTTTCTCAAATTAAACCTTTTTTTATACTGTCATACCCCAAACATTGTCACTTTTTAATGTACCAGTCTGCT
1441 AGAAATCTACAAGAATGATCCCACTATCTTTAGTATGTAAGGATTACACCTTAGATATAGAATAGAATTTGAGACTGCCA
1521 CACATTTATTCAGGCCTTGTTACTTTAAGAAATATCTTATTTTTTCCACCCCAAAGGAGCAAGTGAACCAATTATTGCTG
1601 ACATAATAGGTTCCCTTCCTCCATAAAAGGATTATCAGCCATGATCATTAACATTAAACCAAATAGATGGAGCCAAAAAG
1681 AGATAAAAGTAGCTTCTTAGGCCCTATTAAATCAGGGAAAGACTAGAAGAAAATTTACATTGCTTCTCTTTTTTAATGGC
1761 CAGCGGGGTATGTGTGTGATGTATACTCAGAGTGGTTTTTTGGAAAATTAAACTGTAGCTATAGATGATGCTTTGGTTTT
1841 CTTAATCTCAAGAAAAGAGAAGCAATGGAAATACAGAATGATTAACTGGGGAAGAGGACTTTTGTAAGTGTGACTAGAAC
1921 AATGGTAATGTATGGGCCAATGGGAAGATTTATAAGTCAGATTATTTTTGAAAACTATTTTTAAAAGCAAGAAGACTACA
2001 CTTTCCCTACCAAAACAGAAGTAACATGGACACACTTAAGTTTTGGCTCAATAAATATCAATGTTATTTAACTTAGATCA
2081 TTGAAAGAATACTCATGTAAAGATAATGTTTATTATCATGCTCTTAACAGTCATTATCTTTAATTTTTTAAATGAGAAGC
2161 ATTAATACTAGAAGAGAATTTCTGGTTATCCGGTCACCATATTCACTTTCCACCCCACATTCTTCAGCTAAACGCAAAGA
2241 GAAGCAGTGAAACAGCCTTACCCGCTTCTCTCTTATTAAAGAATCACTGATGTTTTTACTCAATGAAAGGTAAAGTAATA
2321 CCCTTAGCCATTTATTAAACAATTCAACCAAGAGACCTCAAAGTGTGATTGATGATAAGAATAATCAATGCCTTTTCCCT
2401 TCCAACATACTTGAGCAGTCATGACAACCTAAAAATATCATTGGTTGCTTTCCCATTAAAACCAACGTTCCCTGTGGGTC
2481 TTAATTCTTTATTTTCACTCATTTGGTGCTTTCCAAGTCATCTTTTCTTTAAAGTGCCCTTCCTCCAAACTTTAAAAAGT
2561 ACTTCCTTGACAAAATTTCTATTCATTATAAAACATTTCAATATTTTAAGCTTAAATTTTGCTTTTGCTGAAAGCCTACC
2641 ATTTGGCGTGTTAAGTATGAAATATAGTGCAGACTTTTATCTTGGTTTTAAGTGGGGCTCAATAAAAAACACCAGCCACT
2721 TTTGTAATAATGGCATCACAGTGTCATCATGTATGCAAGCAATAAAACTCTTTAGGGTATGGTTTTATACTGAAAATTTA
2801 ATATGAAGGCCCCTTCCCACAAGAATATAGATAATTATTAACTTTCTAGATGTGATACGGTAATTCGAATTGCAGAGTAT
2881 AAGGAAGGGAAATGGGAAGGGGCATCATTCCTTGGATTTTAAATAACTATCAAGAACATTTTTACTTTAACAAAGAAAAT
2961 GGATAGAAAAAGCACATTTTGTTTTCCCTGAAGTTTAATTTGACATCAGGTTTGTGTACTTATCTTCACTAGGTGACTTA
3041 ACTTACCCCAATTTTTTTAAAAATTATTAAACTTTTTACAGAAACTAACCTTTTAAATGTACCCTTTCCCCATATATATA
3121 TACGCACACGTTTGGATTTTTTTTTTTTAAGAACACTTGTTCTAGTTATAAATATATAAAGAAAACGATAAAGTTTGTGG
3201 TACTGCAGGGTTGTTAAAGATTCTTTGATGCCTTCTAAAAACTTTTGTCAAAAATACTTTTGAGTTCACAATTCTGTTTT
3281 ACTTTTCCTTGTCCTTACTTTTTGGAAACAGGGTGGTTGCTTTTATTTGTTTTCTGGTTATATTCAAAGCCTTAAGTTCT
3361 TAATCTGAGCATATTGTCTGTGATAAATTTCTGATGATCTTTCTGGACTAGATACAACCTGAGTAGCAAGCACCAACCGG
3441 AGCAAGTAAACTTCTAGGGAACAAGCGTCTTGGGTTTTATAGGTATCTTTGCTATAATGCAGAATAGATTAATGAAGATT
3521 TCCTATATCATATGATATTTGTGTTAGTGGGTCTAAGATTAAGCACATGATATTTATAAGCTAAAATTAACTCAAAAGTC
3601 AAGAATGTCTTAATGTTTTCATTCTTAAATTTTGTATTCTCCAAGAATGTATTAGTATATGAACTGTGGCCAACCAGTTC
3681 CTATTCTTCAGACTGTATTGACATCTGTAGTGGATCATGTTGCTTCTTCATTCTTACCAATTTTATTAGAATCAAACTTC
3761 TTGTTATTTGCATACTATTATCTACTATAGATTCTCAGCTTTAGAAAATGACTATGATACATAAAGACCACTAGGTCAAC
3841 TTAAAAAACCCTTTCTGTGAATTTATACATGTATGTATATATGTAAAAACACTGTTGATTTGCAATTCTGTCTTTCCATA
3921 GAAATGAACTTTTTCTATCGAAATTGTTTAACTTAAATATTTTAACATAAATTATTTACATGGATCTTTATGTATAATTC
4001 ATCCTTATATATACCCCTTAATCACGTAGTCATGAGAAGATAACTTTGCTTTCTTTACAGAAAGGGCAGAGAGGAATAAG
4081 ATAAGAAACTGAAACAAGCAAGAATGAAGAGAGATGTGGGGGAGAGACTGCTGGTCTCCAGACCACAGCAATGTGTTTTA
4161 AGATAAGATGAAATATTTTAACTGCAGAAGGGATATAAAATCTATGTAATTACATGCTGATGGGATCCATTGCACCCAGG
4241 TTTTTGACCTTGGCCTGTAAATGCTAGACTATGATATCTTGTTATTCTTTTTCTCCTTTGGGCTTTTAAAAAATAATTTC
4321 ATTCTCAGATCATTTTCTGTACTGTTTACTGAGGCAAAAAAAAAAAAAATCTGAAGTCAATCATGGTCTTCTACTTTCTG
4401 GACTGAGCATTTGGCAGAATGCAGTATCTTTTCCTGTATTTTGACATGAAATAGCACATGGCTTCTACAAGATAGTTTTA
4481 ACTTGTTGGGGTCACCGGGAGTTATATGATGGTCAACCCCTTTTCCCAAAATTCATTGTGGTAGTTTTAGTGGAAAACGT
4561 AAATCAAGAAATCTCATATCATACTTTAATAAATAAATACCAAATACATAGTGACATATAGGTTTGGGAAGAAACTAGTC
4641 TGTGGGGACCATTATAAGAGAATCACATTATATATTACACAGTATATGGATATTGGAATGTATCACTTGTGGGGGGTTCT
4721 CTTCATTAGCAAAACAGTCATGTCTGTCTGTATATAAGACTTTTTTTTTTTTAACCAAACTAGCATTTCATTTTGTGAGT
4801 GACAATTGACATTTTAAAATAAGCATAGGCCGGGCATAGTGGCTCATGCCTGTAATCCCAGCCCTTGGGAGGCCGAGGTG
4881 GGCAGATCACTTCAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAATAAAAATAAAA
4961 CAAAATAAGTGTATCTGGGCCAGGCACGGTAGCCCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGTTCGAGACC
5041 AGCCTGGCCAACATGGCAAAACCCTGTCTCTACAAAAATTAGCCAGGTGTGGTGGCACATGCCTGTAATCCCAGCTACTC
5121 GGGAGGTTGAGGCAGGAGAATTGCTTGAACCCGGGAGACAGAGGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCGGC
5201 CTGGGTGACAGAGCAAGACTTCGACTCAAAAAATAAAATAAGCGTATCTGGATTTTTCTTTTGAATTCTTGACTGATAAG
5281 TTTGAGAATGTATGTTTTTGGAATTTTACAGTTGACTCAAGTGTGAAAGTATACACAAGTAATTTTTCTTTTCTAGCTAT
5361 GTGAATGTAAAATACTTGCAGATAATGTATATATTGTGTAATATATGTATATTTGGTCATAAAAGCAGATAATTGGAAAC
5441 ATTGTAAAATTAAGCACTTTAATTCCTATTAAATATTAAACATTTGTATCTTGTAAATAAACACATCCTTAAATTAAAAA
5521 AAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acccGAAAGAUCAGAGUCGAGa 5'
              || |  | ||||||||: 
Target 5' tctaCTATAGATTCTCAGCTTt 3'
 3781 - 3802 142.00 -13.80
2 
miRNA  3' acccgAAAGAUCAGAGUCGAGa 5'
               |||| | |||||| || 
Target 5' aataaTTTC-ATTCTCAGATCa 3'
 4312 - 4332 132.00 -8.40
3 
miRNA  3' acccGAAAGAUCAGAGUCGAga 5'
              | ||||    ||||||  
Target 5' cccaCATTCT----TCAGCTaa 3'
 2214 - 2231 128.00 -7.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
308301 23 ClinVar
883731 28 ClinVar
883732 70 ClinVar
883733 132 ClinVar
881395 168 ClinVar
308302 291 ClinVar
881396 369 ClinVar
308303 412 ClinVar
308304 498 ClinVar
881397 713 ClinVar
308305 735 ClinVar
308306 763 ClinVar
308307 793 ClinVar
308308 796 ClinVar
308309 1007 ClinVar
308310 1008 ClinVar
308311 1069 ClinVar
308312 1134 ClinVar
308313 1149 ClinVar
308314 1161 ClinVar
882991 1260 ClinVar
308315 1275 ClinVar
882992 1352 ClinVar
308316 1355 ClinVar
308317 1357 ClinVar
882993 1366 ClinVar
882994 1376 ClinVar
308318 1455 ClinVar
308319 1486 ClinVar
308320 1493 ClinVar
883786 1531 ClinVar
883787 1565 ClinVar
308321 1705 ClinVar
308322 1724 ClinVar
308323 1782 ClinVar
308324 1829 ClinVar
308325 1867 ClinVar
308326 1909 ClinVar
308327 1955 ClinVar
308328 2027 ClinVar
881453 2097 ClinVar
308329 2104 ClinVar
881454 2193 ClinVar
308330 2204 ClinVar
881889 2265 ClinVar
881890 2310 ClinVar
308331 2375 ClinVar
308332 2463 ClinVar
881891 2488 ClinVar
308333 2538 ClinVar
308334 2639 ClinVar
883064 2649 ClinVar
308335 2814 ClinVar
883065 2860 ClinVar
308336 2927 ClinVar
883066 3023 ClinVar
308337 3038 ClinVar
308338 3045 ClinVar
308339 3112 ClinVar
308340 3112 ClinVar
308341 3131 ClinVar
308342 3131 ClinVar
308343 3137 ClinVar
308344 3151 ClinVar
883839 3196 ClinVar
308345 3341 ClinVar
308346 3368 ClinVar
308347 3439 ClinVar
308348 3483 ClinVar
883840 3544 ClinVar
308349 3631 ClinVar
308350 3677 ClinVar
308351 3771 ClinVar
308352 3815 ClinVar
308353 3893 ClinVar
308354 3906 ClinVar
308355 3920 ClinVar
880548 3938 ClinVar
880549 3941 ClinVar
880550 3995 ClinVar
880551 4015 ClinVar
881969 4029 ClinVar
308356 4064 ClinVar
881970 4119 ClinVar
308357 4129 ClinVar
881971 4193 ClinVar
308358 4212 ClinVar
308359 4269 ClinVar
881972 4318 ClinVar
883137 4348 ClinVar
308360 4356 ClinVar
308361 4439 ClinVar
883138 4447 ClinVar
308362 4455 ClinVar
308363 4498 ClinVar
883139 4586 ClinVar
308364 4653 ClinVar
308365 4757 ClinVar
308366 4761 ClinVar
308367 4832 ClinVar
883912 4833 ClinVar
308368 4863 ClinVar
308369 4926 ClinVar
308370 4957 ClinVar
308371 4978 ClinVar
883913 4989 ClinVar
308372 4992 ClinVar
308373 5021 ClinVar
308374 5073 ClinVar
308375 5153 ClinVar
880630 5154 ClinVar
308376 5178 ClinVar
308377 5199 ClinVar
308378 5224 ClinVar
880631 5244 ClinVar
308379 5245 ClinVar
882043 5266 ClinVar
308380 5310 ClinVar
882044 5322 ClinVar
308381 5330 ClinVar
882045 5390 ClinVar
308382 5485 ClinVar
COSN30453008 3 COSMIC
COSN30465864 8 COSMIC
COSN26420367 18 COSMIC
COSN31573721 20 COSMIC
COSN30471502 35 COSMIC
COSN2528721 43 COSMIC
COSN1147242 47 COSMIC
COSN30519966 53 COSMIC
COSN30473457 59 COSMIC
COSN30505969 61 COSMIC
COSN31500009 79 COSMIC
COSN30503771 90 COSMIC
COSN30148124 101 COSMIC
COSN30179834 110 COSMIC
COSN508270 131 COSMIC
COSN30209071 290 COSMIC
COSN32057917 1134 COSMIC
COSN20645481 1403 COSMIC
COSN32057918 1493 COSMIC
COSN29297546 1543 COSMIC
COSN27606272 2213 COSMIC
COSN28718521 2304 COSMIC
COSN30539422 2310 COSMIC
COSN30545157 2392 COSMIC
COSN31522062 2567 COSMIC
COSN31582432 2580 COSMIC
COSN31562080 2647 COSMIC
COSN31584304 2722 COSMIC
COSN26092949 2859 COSMIC
COSN31517181 2867 COSMIC
COSN29638427 2900 COSMIC
COSN20109439 2929 COSMIC
COSN20109442 3149 COSMIC
COSN5941441 3341 COSMIC
COSN7366666 3348 COSMIC
COSN20109445 3921 COSMIC
COSN16351119 3925 COSMIC
COSN31638762 3935 COSMIC
COSN19345455 3984 COSMIC
COSN7614321 4225 COSMIC
COSN5321317 4340 COSMIC
COSN20109446 4370 COSMIC
COSN20109447 4370 COSMIC
COSN29436178 4459 COSMIC
COSN32063480 4498 COSMIC
COSN32063978 4722 COSMIC
COSN27425033 4773 COSMIC
COSN27595220 4773 COSMIC
COSN8709410 4776 COSMIC
COSN5941442 4826 COSMIC
COSN20316322 4835 COSMIC
COSN24948089 4886 COSMIC
COSN22538735 4966 COSMIC
COSN20512709 5058 COSMIC
COSN21695511 5162 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1309666001 4 dbSNP
rs758387651 5 dbSNP
rs772069129 7 dbSNP
rs777521871 8 dbSNP
rs1391504751 11 dbSNP
rs749723194 13 dbSNP
rs1287793184 14 dbSNP
rs770496240 21 dbSNP
rs781056082 22 dbSNP
rs114284024 23 dbSNP
rs150192477 28 dbSNP
rs1327884477 29 dbSNP
rs1221485749 31 dbSNP
rs1290094853 33 dbSNP
rs1042929355 35 dbSNP
rs1317452501 40 dbSNP
rs775893243 42 dbSNP
rs776011787 42 dbSNP
rs557182812 43 dbSNP
rs1260279691 44 dbSNP
rs763187921 45 dbSNP
rs370393543 49 dbSNP
rs998812814 69 dbSNP
rs1332829385 70 dbSNP
rs1326502697 75 dbSNP
rs1052847729 76 dbSNP
rs1249627853 79 dbSNP
rs1480348578 89 dbSNP
rs772274440 91 dbSNP
rs1171247265 92 dbSNP
rs891739195 102 dbSNP
rs1378664062 117 dbSNP
rs1251131756 132 dbSNP
rs1229515856 140 dbSNP
rs1013668558 142 dbSNP
rs1245715321 149 dbSNP
rs1210188793 157 dbSNP
rs771495250 167 dbSNP
rs138847108 168 dbSNP
rs775773749 170 dbSNP
rs1198448836 184 dbSNP
rs1394256546 185 dbSNP
rs906578818 186 dbSNP
rs1002709700 211 dbSNP
rs547814170 217 dbSNP
rs1363078691 219 dbSNP
rs567623071 222 dbSNP
rs952821074 227 dbSNP
rs1299973164 231 dbSNP
rs1177777190 244 dbSNP
rs1431734151 254 dbSNP
rs1002392901 268 dbSNP
rs984163597 269 dbSNP
rs1016498198 270 dbSNP
rs529420974 275 dbSNP
rs1461014495 278 dbSNP
rs1403398481 279 dbSNP
rs79732949 291 dbSNP
rs1448256775 296 dbSNP
rs764516831 302 dbSNP
rs961618009 306 dbSNP
rs976864612 307 dbSNP
rs1190019512 309 dbSNP
rs1403021300 328 dbSNP
rs922775358 331 dbSNP
rs1207612130 333 dbSNP
rs76665784 333 dbSNP
rs985603859 334 dbSNP
rs796925073 367 dbSNP
rs925762740 369 dbSNP
rs935645736 371 dbSNP
rs1340037064 377 dbSNP
rs1052802324 378 dbSNP
rs576605616 379 dbSNP
rs1378567322 386 dbSNP
rs1282608269 388 dbSNP
rs1388959071 389 dbSNP
rs1450514270 389 dbSNP
rs1293667173 394 dbSNP
rs1307187348 395 dbSNP
rs943176320 396 dbSNP
rs891695057 403 dbSNP
rs538842909 405 dbSNP
rs886049256 412 dbSNP
rs1045558631 414 dbSNP
rs1409991365 429 dbSNP
rs187863189 431 dbSNP
rs925833950 432 dbSNP
rs1228188807 434 dbSNP
rs1179716358 440 dbSNP
rs1260113190 441 dbSNP
rs1319825341 444 dbSNP
rs1473602200 449 dbSNP
rs1257946635 464 dbSNP
rs1211757393 471 dbSNP
rs1481950727 474 dbSNP
rs1253810042 478 dbSNP
rs886049257 498 dbSNP
rs1468745272 500 dbSNP
rs1230228439 503 dbSNP
rs934570949 503 dbSNP
rs1335817894 509 dbSNP
rs1287969205 527 dbSNP
rs1408328212 535 dbSNP
rs577689311 540 dbSNP
rs1034162019 541 dbSNP
rs888569310 546 dbSNP
rs1005935679 563 dbSNP
rs1348769097 582 dbSNP
rs1015565556 587 dbSNP
rs1170481112 593 dbSNP
rs949370312 602 dbSNP
rs1418037544 606 dbSNP
rs1425150310 621 dbSNP
rs1157974621 635 dbSNP
rs762059070 641 dbSNP
rs539896639 645 dbSNP
rs576956520 646 dbSNP
rs1046496322 656 dbSNP
rs1177692882 667 dbSNP
rs905293561 680 dbSNP
rs1245053065 682 dbSNP
rs1223778882 692 dbSNP
rs976980640 695 dbSNP
rs1468976095 702 dbSNP
rs1002319266 711 dbSNP
rs1226829212 713 dbSNP
rs1331628688 714 dbSNP
rs372149137 715 dbSNP
rs1308218359 716 dbSNP
rs1029901625 721 dbSNP
rs559729869 730 dbSNP
rs1366194356 733 dbSNP
rs886049258 735 dbSNP
rs1295803630 739 dbSNP
rs1394606082 740 dbSNP
rs1442389089 740 dbSNP
rs1319439669 745 dbSNP
rs954350874 755 dbSNP
rs886049259 763 dbSNP
rs1455363156 765 dbSNP
rs994119513 765 dbSNP
rs765670555 773 dbSNP
rs1280110507 775 dbSNP
rs925679803 782 dbSNP
rs1353629276 787 dbSNP
rs1232824295 791 dbSNP
rs140601094 793 dbSNP
rs1195448315 794 dbSNP
rs112398567 796 dbSNP
rs562623569 797 dbSNP
rs1207033062 805 dbSNP
rs949736131 812 dbSNP
rs1466464525 815 dbSNP
rs1261671206 820 dbSNP
rs779127444 821 dbSNP
rs1209769365 824 dbSNP
rs1258773597 834 dbSNP
rs573860138 840 dbSNP
rs1193948806 846 dbSNP
rs1235724865 850 dbSNP
rs1264952967 853 dbSNP
rs1371068409 854 dbSNP
rs1473923211 860 dbSNP
rs1186667770 864 dbSNP
rs1419155048 866 dbSNP
rs1426111469 868 dbSNP
rs1157293867 869 dbSNP
rs964412624 872 dbSNP
rs978521499 888 dbSNP
rs1344989381 890 dbSNP
rs1045674837 907 dbSNP
rs1357245544 908 dbSNP
rs1300275689 914 dbSNP
rs1175402397 920 dbSNP
rs1454693109 921 dbSNP
rs1389616797 936 dbSNP
rs1186828785 956 dbSNP
rs1430384407 964 dbSNP
rs1262617474 980 dbSNP
rs1181518182 984 dbSNP
rs1482456590 988 dbSNP
rs531598673 992 dbSNP
rs927256388 997 dbSNP
rs886049260 1007 dbSNP
rs114843464 1008 dbSNP
rs1225473803 1012 dbSNP
rs1327707382 1020 dbSNP
rs1048902119 1026 dbSNP
rs193145088 1029 dbSNP
rs1294007073 1031 dbSNP
rs1379754670 1035 dbSNP
rs934519679 1048 dbSNP
rs1304521018 1049 dbSNP
rs989097488 1054 dbSNP
rs1435254974 1057 dbSNP
rs537833755 1069 dbSNP
rs1166652018 1076 dbSNP
rs1463545471 1080 dbSNP
rs917194103 1084 dbSNP
rs752206291 1099 dbSNP
rs1287695729 1104 dbSNP
rs1260052696 1119 dbSNP
rs1189016628 1122 dbSNP
rs949338124 1127 dbSNP
rs1036957596 1132 dbSNP
rs10844268 1134 dbSNP
rs1340823419 1136 dbSNP
rs1251434152 1146 dbSNP
rs56110646 1149 dbSNP
rs1319621737 1160 dbSNP
rs540745195 1161 dbSNP
rs1037796668 1163 dbSNP
rs567710341 1167 dbSNP
rs562008040 1170 dbSNP
rs1349670661 1179 dbSNP
rs536627523 1182 dbSNP
rs1237558314 1202 dbSNP
rs1474026820 1208 dbSNP
rs1393106098 1211 dbSNP
rs1397288211 1228 dbSNP
rs954346943 1229 dbSNP
rs1456463640 1232 dbSNP
rs550531211 1240 dbSNP
rs993698771 1244 dbSNP
rs1472447086 1246 dbSNP
rs1160872602 1247 dbSNP
rs1026953338 1249 dbSNP
rs756972257 1260 dbSNP
rs1393449012 1268 dbSNP
rs1250608705 1271 dbSNP
rs570269532 1275 dbSNP
rs1313488239 1278 dbSNP
rs957314823 1281 dbSNP
rs1233553782 1286 dbSNP
rs80346888 1293 dbSNP
rs1440183057 1313 dbSNP
rs1277617235 1338 dbSNP
rs1241096379 1345 dbSNP
rs558890776 1352 dbSNP
rs886049261 1355 dbSNP
rs886049262 1357 dbSNP
rs981135067 1358 dbSNP
rs927175650 1366 dbSNP
rs937291712 1383 dbSNP
rs572562996 1385 dbSNP
rs1160718638 1386 dbSNP
rs1386892911 1386 dbSNP
rs1470719650 1389 dbSNP
rs1311228472 1393 dbSNP
rs769228630 1394 dbSNP
rs940559128 1406 dbSNP
rs1451984562 1413 dbSNP
rs1233126721 1430 dbSNP
rs1475774300 1431 dbSNP
rs1278965839 1432 dbSNP
rs1037074141 1450 dbSNP
rs7964947 1455 dbSNP
rs772441004 1460 dbSNP
rs553427541 1461 dbSNP
rs1351164916 1476 dbSNP
rs1274138763 1483 dbSNP
rs1051113754 1485 dbSNP
rs55970127 1486 dbSNP
rs1007151473 1490 dbSNP
rs7980205 1493 dbSNP
rs1434640581 1503 dbSNP
rs1324838828 1506 dbSNP
rs1320549212 1510 dbSNP
rs1038167887 1515 dbSNP
rs920703494 1523 dbSNP
rs929408888 1525 dbSNP
rs1180856784 1531 dbSNP
rs557400551 1555 dbSNP
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rs1010435039 1560 dbSNP
rs77836862 1565 dbSNP
rs185737679 1570 dbSNP
rs900138990 1579 dbSNP
rs1208627087 1581 dbSNP
rs1169858202 1590 dbSNP
rs1280957410 1592 dbSNP
rs971150707 1596 dbSNP
rs1359981815 1599 dbSNP
rs1272101760 1603 dbSNP
rs1431795955 1604 dbSNP
rs1033149803 1606 dbSNP
rs1417019130 1623 dbSNP
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rs1168539062 1629 dbSNP
rs1353819178 1645 dbSNP
rs1416820623 1648 dbSNP
rs1010427510 1653 dbSNP
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rs1236674651 1664 dbSNP
rs1185447099 1671 dbSNP
rs1486536922 1681 dbSNP
rs1258077530 1690 dbSNP
rs1204382416 1691 dbSNP
rs1024135565 1693 dbSNP
rs1275261721 1698 dbSNP
rs886049263 1705 dbSNP
rs1368500203 1715 dbSNP
rs1291684645 1723 dbSNP
rs4931030 1724 dbSNP
rs984715023 1727 dbSNP
rs909160892 1739 dbSNP
rs959606134 1742 dbSNP
rs1440714904 1753 dbSNP
rs1275045343 1765 dbSNP
rs1346745768 1766 dbSNP
rs1212245863 1769 dbSNP
rs1410044161 1771 dbSNP
rs1416636163 1780 dbSNP
rs886049264 1782 dbSNP
rs1476042164 1788 dbSNP
rs920614153 1790 dbSNP
rs1181331347 1791 dbSNP
rs1479648900 1808 dbSNP
rs1234666565 1814 dbSNP
rs4931031 1829 dbSNP
rs564972540 1832 dbSNP
rs368864358 1834 dbSNP
rs1271467181 1837 dbSNP
rs918641424 1842 dbSNP
rs1048312823 1848 dbSNP
rs1288182645 1854 dbSNP
rs1222562960 1856 dbSNP
rs934080923 1866 dbSNP
rs886049265 1867 dbSNP
rs1376077909 1873 dbSNP
rs1280659361 1875 dbSNP
rs35136394 1877 dbSNP
rs527460769 1890 dbSNP
rs1200070660 1892 dbSNP
rs1393137523 1904 dbSNP
rs1323435461 1905 dbSNP
rs1462731417 1908 dbSNP
rs886049266 1909 dbSNP
rs1248647478 1910 dbSNP
rs1394923711 1911 dbSNP
rs889786857 1915 dbSNP
rs1474568405 1918 dbSNP
rs1185936065 1930 dbSNP
rs1424445044 1933 dbSNP
rs1177746726 1939 dbSNP
rs942735544 1939 dbSNP
rs1039238080 1941 dbSNP
rs1251274300 1942 dbSNP
rs900778701 1951 dbSNP
rs1239829 1955 dbSNP
rs1267750190 1957 dbSNP
rs1054110602 1961 dbSNP
rs893423676 1962 dbSNP
rs1323990409 1965 dbSNP
rs1319127975 1971 dbSNP
rs1010382580 1979 dbSNP
rs1219198650 1985 dbSNP
rs561358361 1989 dbSNP
rs575869656 1991 dbSNP
rs1009952688 1996 dbSNP
rs1287949478 2002 dbSNP
rs1024062043 2005 dbSNP
rs1346792616 2008 dbSNP
rs1428217167 2010 dbSNP
rs1434094920 2012 dbSNP
rs765502938 2027 dbSNP
rs1195507817 2028 dbSNP
rs1454773163 2034 dbSNP
rs534102977 2044 dbSNP
rs1185028507 2047 dbSNP
rs1002629960 2048 dbSNP
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rs1210013384 2050 dbSNP
rs1034545864 2081 dbSNP
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rs1283092692 2099 dbSNP
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rs1348016694 2101 dbSNP
rs55963204 2104 dbSNP
rs1380219349 2106 dbSNP
rs1363806187 2116 dbSNP
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rs1334817144 2128 dbSNP
rs1373491531 2129 dbSNP
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rs903572172 5058 dbSNP
rs999270688 5059 dbSNP
rs1382416815 5060 dbSNP
rs1178097967 5063 dbSNP
rs1030797301 5064 dbSNP
rs960386846 5066 dbSNP
rs886049278 5073 dbSNP
rs777538721 5074 dbSNP
rs1490695119 5076 dbSNP
rs1291781489 5080 dbSNP
rs1179173801 5100 dbSNP
rs1350984194 5113 dbSNP
rs1285953308 5118 dbSNP
rs1480105725 5121 dbSNP
rs559478921 5121 dbSNP
rs528148343 5122 dbSNP
rs1272992361 5128 dbSNP
rs1406768847 5134 dbSNP
rs1346077348 5139 dbSNP
rs548231913 5144 dbSNP
rs1417964205 5151 dbSNP
rs886049279 5153 dbSNP
rs1160169859 5154 dbSNP
rs929844757 5155 dbSNP
rs1133508 5161 dbSNP
rs1202043818 5168 dbSNP
rs756156060 5171 dbSNP
rs983496495 5177 dbSNP
rs777896036 5178 dbSNP
rs944695908 5179 dbSNP
rs1040796585 5180 dbSNP
rs922169505 5181 dbSNP
rs1487047671 5187 dbSNP
rs902253882 5195 dbSNP
rs1216142044 5198 dbSNP
rs1133509 5199 dbSNP
rs1385321574 5200 dbSNP
rs1034840920 5204 dbSNP
rs1225133635 5215 dbSNP
rs1324126853 5223 dbSNP
rs886049280 5224 dbSNP
rs1044038613 5228 dbSNP
rs1398202066 5230 dbSNP
rs904021982 5239 dbSNP
rs1364243496 5240 dbSNP
rs1225473163 5244 dbSNP
rs186014657 5245 dbSNP
rs544303198 5246 dbSNP
rs1357653958 5266 dbSNP
rs1178967461 5269 dbSNP
rs1470523509 5277 dbSNP
rs550580031 5281 dbSNP
rs1169227853 5291 dbSNP
rs570673443 5293 dbSNP
rs1197706781 5301 dbSNP
rs556209722 5310 dbSNP
rs1263312150 5319 dbSNP
rs1186597654 5321 dbSNP
rs1013226199 5322 dbSNP
rs1240912500 5329 dbSNP
rs886049281 5330 dbSNP
rs1205288038 5334 dbSNP
rs1461640502 5341 dbSNP
rs1023722982 5342 dbSNP
rs1296312547 5343 dbSNP
rs1207698021 5344 dbSNP
rs372693452 5349 dbSNP
rs145674040 5356 dbSNP
rs796819588 5363 dbSNP
rs1400105429 5380 dbSNP
rs1329908206 5382 dbSNP
rs566628332 5390 dbSNP
rs1374157077 5400 dbSNP
rs1170476237 5408 dbSNP
rs1422761989 5418 dbSNP
rs1451657893 5438 dbSNP
rs922740788 5440 dbSNP
rs1200991242 5443 dbSNP
rs1185112020 5447 dbSNP
rs1026896481 5455 dbSNP
rs951199521 5459 dbSNP
rs1422055078 5463 dbSNP
rs779084230 5469 dbSNP
rs1481544867 5471 dbSNP
rs1251846926 5474 dbSNP
rs773762356 5475 dbSNP
rs1220887250 5478 dbSNP
rs1320052271 5480 dbSNP
rs1477781615 5481 dbSNP
rs879713798 5482 dbSNP
rs577630567 5485 dbSNP
rs966529471 5491 dbSNP
rs1376449634 5498 dbSNP
rs1375124804 5502 dbSNP
rs976076875 5503 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000427716.2 | 3UTR | UCAAGACAUUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000427716.2 | 3UTR | UCAAGACAUUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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