pre-miRNA Information
pre-miRNA hsa-mir-548ah   
Genomic Coordinates chr4: 76575551 - 76575626
Description Homo sapiens miR-548ah stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548ah-3p
Sequence 47| CAAAAACUGCAGUUACUUUUGC |68
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 4 + 76575599 29233923 MiREDiBase
A-to-I 4 4 + 76575600 29233923 MiREDiBase
A-to-I 5 4 + 76575601 29233923 MiREDiBase
A-to-I 6 4 + 76575602 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1486932451 12 dbSNP
rs1036377818 16 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DENND4C   
Synonyms C9orf55, C9orf55B, RAB10GEF, bA513M16.3
Description DENN domain containing 4C
Transcript NM_017925   
Expression
Putative miRNA Targets on DENND4C
3'UTR of DENND4C
(miRNA target sites are highlighted)
>DENND4C|NM_017925|3'UTR
   1 ATAGAGATTCACTAGAATGTTGACACACAAGGCTTGGGGATTAGATTTCATCTGGAAACATTCAAGTTTTTTTTTCCAAA
  81 TCGTAAGAACTGGTGAATACGGAATTGAAGTAACTCTTGGGGACAATATATAATGAATTATGATTCATATTGCATTACCT
 161 TGAAATATGAAGTGCCATTTGAATGTCCCAGGGCTTATTAATATTGAAGATTTTCAACCCCTGAACTGCTTTTCTGCCTC
 241 TGTGGAAAACTACTTTGGGATTCTTCAGTATTTGTAGTAGTTTGATAGAAATAATGAGGAACCATATTCATTCTAGGCAT
 321 TGTTTATATTTGAAGTTACTGAGTTTGAGGAATGGCAAATTAAATTTGCCTAACCCCCAAAACAAATGAAATATCTCAAT
 401 TATAAAAGCAACATGGCCGGGCACGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCTGAGCAAGGTGGGTGGATC
 481 ACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACACGGTGAGACCCTGTCTTTACTAAAAATACAAAAATTAGCCAGG
 561 CGCACCACTGTAGTCCCAGCTACTCAGGCTGAGGCAGGAGAATCGCTTGAACTGAGGCAGAGGCTACAGTGAGTGGAGAT
 641 CACGCCACTGCAACTCCAGCTTGGGTGACAGAGTGAGACCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGCAACATAT
 721 TTGTGTAAGTTTGTATATGTGTAGGGCTGTGTAGGTATGTGTATATACAGCCATATTCTAAGTGTATATTTATTAAAATA
 801 GATTGCATGTTGCAATACGGTTTTCTGAAAGGGGTCTCATTGACTATTAAATAAATGACTACTACTAAACTTGTCTGTAG
 881 TCATTAATCTTAAAATTACCTGAAAATCTGATGACAGCTGCCTTCCCTAACTTTAATGTATTAGGTTGGCACAAAATTAA
 961 TTGTAGTTTTTGCCACTATTAATGGCAAAAACCGCAATTATTTTTGTACCAACATAATACACCTTTCATATTATGTATTA
1041 TCTTGCTTAATGGGTTTTATCTTGATTATCCAGTTACTTCCATCCTCTTCCCAATGTTAATTTGCAATAGTTTTAAAATG
1121 GGAACAAATGAATCAATCATCAGATAGTTAAAATGAAATTAAATCAGCTGCCTAATAATTTATGGAATTCATTGGAATGT
1201 GCTTAAAATGCTAAAGTGTATGTCATTGAACATGAAATCTTTTTTCAGGCACATACATTGTTGGTATTGATGACTTTTTA
1281 AAACCTGTGGGATAAACTTGCACTGCACACGGAAGTTTTATTCTTGTATATTTAGATTTGTATGCTTGTGAGTAAAAATG
1361 TGCATTTGTAAATACTGTGTTTTTAGGTTGAATCAATTAAGTCTTAAAACTGTAAATTTATTAAGCTTGTTGCCAGTAGG
1441 TTTAAGAAAATCATGATCTCACATGCCTCACTTTGACATTTATCATGCCTTTTATTAAAAATATCCCTTAGGAACAGTAA
1521 GTTTGCCTTAACTCTCTGCATGGTTTAAAAAGCCATTGGTTTTGTGTGTGTTTACAGTAATTATGCAGATGACTAAATGA
1601 GTTGACACAGTAAAATTACTTCCATATGGTACAGTAACAACCTAACTCCCTTCTACCTGATGTAACCATTTACAAATTAT
1681 AGTTATTGTACCAGTCTTTCAACATTTCAGGGTTAATCTGACCTATGCAGAATTCTAGTGTGAATTTATTGTGAAAATGC
1761 TAAATGAAACAATTTGTCAGAAATTATGTACAATTTTCATTACCTTCAAAATGGATCTTTTGCACTGTCTGAGAGTATAT
1841 ATTTTTGCAACTCAAGACTTGGTACTAGTTTTAATACTTAACACTTACTGACCCAACAGAAGTTTGGAATTACCTTGCAT
1921 ATAAAAATTGAGGTTGAATAAAATGAAAAATTGTTGTTTTCTGTTACATTAAGCCTCTTGAAATCTGTAATCTTTAGAAT
2001 CCCAATATTTTGTTTTTTCCATTCCTTCACTCGTAACTTGAACTCAAGTTTTCACTTACTGACGCGCTTCCCATTAAAAA
2081 AAATCTGTAAAGATCAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgUUUUCAUUGACGUCAAAAAc 5'
            |||| |||:||:||||||| 
Target 5' acAAAATTAATTGTAGTTTTTg 3'
951 - 972 184.00 -20.50
2
miRNA  3' cguuUUCA--UUGACGUCAAAAac 5'
              || |  ||||  ||||||  
Target 5' tcgtAACTTGAACTCAAGTTTTca 3'
2031 - 2054 136.00 -6.80
3
miRNA  3' cgUUUUCAU-UGACG-------UCAAAAac 5'
            |||  |: |||||       ||||||  
Target 5' atAAACTTGCACTGCACACGGAAGTTTTat 3'
1292 - 1321 132.00 -5.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26973188 5 COSMIC
COSN30193215 7 COSMIC
COSN30477302 35 COSMIC
COSN30467857 50 COSMIC
COSN20065274 76 COSMIC
COSN30157643 136 COSMIC
COSN30157673 137 COSMIC
COSN31599600 173 COSMIC
COSN31554752 263 COSMIC
COSN32048415 274 COSMIC
COSN16431028 361 COSMIC
COSN16437927 365 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs554637682 3 dbSNP
rs767514157 3 dbSNP
rs1355593613 5 dbSNP
rs766804046 7 dbSNP
rs760196569 8 dbSNP
rs1352397811 9 dbSNP
rs1223938447 12 dbSNP
rs930052633 14 dbSNP
rs760712921 16 dbSNP
rs1424566725 20 dbSNP
rs375313331 22 dbSNP
rs1215147199 23 dbSNP
rs1260216253 28 dbSNP
rs140821869 29 dbSNP
rs1056438116 30 dbSNP
rs368328156 33 dbSNP
rs1461311844 35 dbSNP
rs765767106 39 dbSNP
rs1361133781 40 dbSNP
rs1161174958 41 dbSNP
rs765042685 50 dbSNP
rs752599924 53 dbSNP
rs560736360 55 dbSNP
rs751026744 58 dbSNP
rs1201902088 61 dbSNP
rs1479098298 63 dbSNP
rs954714932 66 dbSNP
rs1266042680 67 dbSNP
rs370771934 67 dbSNP
rs910606674 67 dbSNP
rs1263684924 74 dbSNP
rs1444780136 76 dbSNP
rs903752741 80 dbSNP
rs1219469923 83 dbSNP
rs1170888713 84 dbSNP
rs914066393 84 dbSNP
rs945566448 87 dbSNP
rs754559641 88 dbSNP
rs1222720157 93 dbSNP
rs1030831419 102 dbSNP
rs1290630792 103 dbSNP
rs41270105 105 dbSNP
rs906799398 106 dbSNP
rs1334864725 107 dbSNP
rs1471097831 108 dbSNP
rs1427516885 110 dbSNP
rs1175951973 111 dbSNP
rs1422007795 115 dbSNP
rs997270139 115 dbSNP
rs1185296754 117 dbSNP
rs1485797401 118 dbSNP
rs1241047563 141 dbSNP
rs1030061288 142 dbSNP
rs1462251631 147 dbSNP
rs879690890 149 dbSNP
rs1202635814 151 dbSNP
rs1359695388 152 dbSNP
rs187251120 154 dbSNP
rs1212760794 160 dbSNP
rs1015329935 165 dbSNP
rs1284824857 169 dbSNP
rs1454697552 174 dbSNP
rs1345740321 175 dbSNP
rs1336322823 176 dbSNP
rs1466283518 184 dbSNP
rs896979643 187 dbSNP
rs1168727050 190 dbSNP
rs998450415 192 dbSNP
rs369206170 194 dbSNP
rs1029552092 204 dbSNP
rs954106809 216 dbSNP
rs1446002968 219 dbSNP
rs1240655575 221 dbSNP
rs1272542345 227 dbSNP
rs1018965812 240 dbSNP
rs962987711 241 dbSNP
rs1252889179 246 dbSNP
rs1353535468 248 dbSNP
rs986111201 250 dbSNP
rs1306687574 251 dbSNP
rs1285882280 253 dbSNP
rs1017616169 254 dbSNP
rs974244110 261 dbSNP
rs1487520294 262 dbSNP
rs958060832 263 dbSNP
rs1447831555 265 dbSNP
rs755885474 269 dbSNP
rs1269952354 274 dbSNP
rs918761039 279 dbSNP
rs989553731 285 dbSNP
rs777616174 286 dbSNP
rs1166023400 290 dbSNP
rs1196907390 296 dbSNP
rs1423229709 297 dbSNP
rs930104724 300 dbSNP
rs1365624519 314 dbSNP
rs992218324 316 dbSNP
rs571013002 319 dbSNP
rs917998765 333 dbSNP
rs948075219 341 dbSNP
rs1045070428 347 dbSNP
rs1382879313 357 dbSNP
rs1419123882 359 dbSNP
rs373391004 375 dbSNP
rs1470528802 380 dbSNP
rs547074001 388 dbSNP
rs945543965 392 dbSNP
rs936581722 395 dbSNP
rs1224653932 402 dbSNP
rs565697252 405 dbSNP
rs1304729302 411 dbSNP
rs1290904824 414 dbSNP
rs534209944 419 dbSNP
rs1241023526 420 dbSNP
rs386733366 423 dbSNP
rs192587078 424 dbSNP
rs892321540 425 dbSNP
rs184533662 426 dbSNP
rs1368767191 433 dbSNP
rs1239057051 435 dbSNP
rs1309248961 438 dbSNP
rs1403674382 449 dbSNP
rs538442448 450 dbSNP
rs888853472 452 dbSNP
rs1453925242 454 dbSNP
rs1365029995 464 dbSNP
rs1007675073 469 dbSNP
rs1015920895 471 dbSNP
rs888104301 475 dbSNP
rs188194598 478 dbSNP
rs150125454 499 dbSNP
rs138416695 500 dbSNP
rs1438482657 504 dbSNP
rs1489788541 506 dbSNP
rs1268163201 511 dbSNP
rs555712542 512 dbSNP
rs1486892991 513 dbSNP
rs1051374492 514 dbSNP
rs1238633857 517 dbSNP
rs546355268 519 dbSNP
rs770843041 520 dbSNP
rs1345263721 523 dbSNP
rs866857048 528 dbSNP
rs889666449 528 dbSNP
rs1386518862 529 dbSNP
rs1006805582 530 dbSNP
rs573970686 531 dbSNP
rs1429614145 532 dbSNP
rs918035506 533 dbSNP
rs1479372011 536 dbSNP
rs958008505 537 dbSNP
rs1193827521 542 dbSNP
rs1406775249 552 dbSNP
rs1430186927 553 dbSNP
rs1451932268 555 dbSNP
rs1259782568 558 dbSNP
rs1204673086 561 dbSNP
rs1461811307 562 dbSNP
rs756534542 563 dbSNP
rs1202009099 564 dbSNP
rs981230322 569 dbSNP
rs925311490 573 dbSNP
rs542481415 578 dbSNP
rs1325237574 579 dbSNP
rs1161100550 587 dbSNP
rs1381215540 589 dbSNP
rs1406166472 605 dbSNP
rs967201769 606 dbSNP
rs1467850606 610 dbSNP
rs1052363925 619 dbSNP
rs1168243881 627 dbSNP
rs544854096 634 dbSNP
rs531358081 635 dbSNP
rs991018109 636 dbSNP
rs910158887 637 dbSNP
rs1330052973 644 dbSNP
rs933164177 645 dbSNP
rs1461005371 658 dbSNP
rs1273935254 660 dbSNP
rs1197975090 661 dbSNP
rs1337838793 665 dbSNP
rs1251307480 666 dbSNP
rs1247266637 668 dbSNP
rs1455072933 668 dbSNP
rs1382903465 670 dbSNP
rs1314009341 672 dbSNP
rs562849973 674 dbSNP
rs1450052479 681 dbSNP
rs1321499001 682 dbSNP
rs1250224444 685 dbSNP
rs1394068418 685 dbSNP
rs1036664117 686 dbSNP
rs1160527457 686 dbSNP
rs1279844426 686 dbSNP
rs1307132323 686 dbSNP
rs1333785008 686 dbSNP
rs1355023724 686 dbSNP
rs1367424102 686 dbSNP
rs1404905825 686 dbSNP
rs1405292071 686 dbSNP
rs1408724986 686 dbSNP
rs1443844297 686 dbSNP
rs1468752854 686 dbSNP
rs368857837 686 dbSNP
rs79889954 686 dbSNP
rs1363616890 687 dbSNP
rs1200652636 689 dbSNP
rs1253364079 689 dbSNP
rs1340322800 690 dbSNP
rs918303199 697 dbSNP
rs1051601399 703 dbSNP
rs1256214351 703 dbSNP
rs1450547731 704 dbSNP
rs1462673085 705 dbSNP
rs1185381383 706 dbSNP
rs888894970 706 dbSNP
rs1007315138 707 dbSNP
rs1281301820 707 dbSNP
rs1491390801 707 dbSNP
rs1320323174 708 dbSNP
rs1345882310 708 dbSNP
rs1398992549 708 dbSNP
rs1491485399 708 dbSNP
rs868585537 709 dbSNP
rs1423041426 710 dbSNP
rs549575282 710 dbSNP
rs1016386427 711 dbSNP
rs114547466 712 dbSNP
rs1006749932 713 dbSNP
rs1465797213 714 dbSNP
rs1169454240 715 dbSNP
rs1397538813 717 dbSNP
rs1054348025 718 dbSNP
rs993113016 719 dbSNP
rs1444763148 721 dbSNP
rs79845784 724 dbSNP
rs1021378341 727 dbSNP
rs951630731 727 dbSNP
rs966777296 728 dbSNP
rs1362610558 730 dbSNP
rs1013741404 736 dbSNP
rs1315457205 738 dbSNP
rs542393774 738 dbSNP
rs28650045 744 dbSNP
rs1337714164 745 dbSNP
rs1341417743 755 dbSNP
rs1404420047 766 dbSNP
rs1175754510 771 dbSNP
rs749490666 774 dbSNP
rs1422293652 775 dbSNP
rs980898318 776 dbSNP
rs1185223915 782 dbSNP
rs1447209615 783 dbSNP
rs1462354992 787 dbSNP
rs910107826 787 dbSNP
rs1256352607 788 dbSNP
rs925329900 789 dbSNP
rs146921243 793 dbSNP
rs972998651 796 dbSNP
rs376805080 798 dbSNP
rs1275030676 799 dbSNP
rs1212730128 803 dbSNP
rs933699828 804 dbSNP
rs1315790365 805 dbSNP
rs988122180 813 dbSNP
rs913858643 816 dbSNP
rs1051268152 818 dbSNP
rs541895799 819 dbSNP
rs1129101 820 dbSNP
rs1478001063 829 dbSNP
rs549649833 831 dbSNP
rs774594513 831 dbSNP
rs1445869254 834 dbSNP
rs1192483570 839 dbSNP
rs1054296320 841 dbSNP
rs1480873719 841 dbSNP
rs910386755 846 dbSNP
rs893022835 848 dbSNP
rs560355169 849 dbSNP
rs1359140264 854 dbSNP
rs1464966690 857 dbSNP
rs567967200 858 dbSNP
rs538575784 860 dbSNP
rs1037486533 865 dbSNP
rs1224530111 884 dbSNP
rs1399712520 889 dbSNP
rs1003571756 890 dbSNP
rs1347607761 898 dbSNP
rs1366760000 900 dbSNP
rs1305430096 903 dbSNP
rs556795677 906 dbSNP
rs898902904 911 dbSNP
rs1163703859 913 dbSNP
rs1366196476 913 dbSNP
rs1419277333 915 dbSNP
rs993165272 917 dbSNP
rs1035492268 918 dbSNP
rs181056489 923 dbSNP
rs538744155 935 dbSNP
rs1269529939 939 dbSNP
rs895452076 940 dbSNP
rs1287985996 942 dbSNP
rs1013840022 943 dbSNP
rs1025625978 947 dbSNP
rs962884433 949 dbSNP
rs1216825697 954 dbSNP
rs969597308 955 dbSNP
rs1318988705 957 dbSNP
rs1129102 958 dbSNP
rs1215605606 964 dbSNP
rs1346471128 964 dbSNP
rs1285823363 974 dbSNP
rs770069253 979 dbSNP
rs1388007555 987 dbSNP
rs554258280 989 dbSNP
rs774244827 993 dbSNP
rs527656271 994 dbSNP
rs572323978 995 dbSNP
rs1490730676 999 dbSNP
rs1025917029 1002 dbSNP
rs1346619160 1004 dbSNP
rs546520571 1009 dbSNP
rs1472182878 1010 dbSNP
rs1423888362 1011 dbSNP
rs1201570848 1012 dbSNP
rs1431340131 1015 dbSNP
rs986494227 1019 dbSNP
rs958106592 1021 dbSNP
rs1486856904 1023 dbSNP
rs910926705 1024 dbSNP
rs942432104 1027 dbSNP
rs764362345 1032 dbSNP
rs1381412906 1038 dbSNP
rs988174545 1039 dbSNP
rs1240725358 1041 dbSNP
rs748288508 1042 dbSNP
rs989939749 1046 dbSNP
rs1382308084 1047 dbSNP
rs1363452707 1054 dbSNP
rs1318205355 1055 dbSNP
rs1456360699 1055 dbSNP
rs913910798 1055 dbSNP
rs1178365508 1057 dbSNP
rs1406597692 1057 dbSNP
rs77383966 1058 dbSNP
rs143344345 1060 dbSNP
rs1193727632 1061 dbSNP
rs1430445615 1065 dbSNP
rs1246248855 1066 dbSNP
rs773562777 1073 dbSNP
rs1188221170 1074 dbSNP
rs374260370 1078 dbSNP
rs910431031 1084 dbSNP
rs1245152502 1088 dbSNP
rs1199112494 1091 dbSNP
rs943242138 1095 dbSNP
rs1037937544 1104 dbSNP
rs920382365 1108 dbSNP
rs1311440488 1109 dbSNP
rs929065771 1119 dbSNP
rs1343743064 1123 dbSNP
rs1047430366 1126 dbSNP
rs939319368 1131 dbSNP
rs1056475796 1133 dbSNP
rs895190546 1137 dbSNP
rs543340071 1138 dbSNP
rs1338230692 1142 dbSNP
rs867801538 1144 dbSNP
rs1283599412 1148 dbSNP
rs1401228265 1154 dbSNP
rs1168482029 1166 dbSNP
rs564914636 1169 dbSNP
rs1463439460 1171 dbSNP
rs1388441506 1172 dbSNP
rs1168068054 1173 dbSNP
rs1014310447 1175 dbSNP
rs1323239227 1178 dbSNP
rs560022371 1183 dbSNP
rs1221893927 1187 dbSNP
rs905424291 1189 dbSNP
rs1185689384 1190 dbSNP
rs1245702990 1197 dbSNP
rs1487227905 1199 dbSNP
rs1442269227 1200 dbSNP
rs1251665074 1209 dbSNP
rs1179958277 1212 dbSNP
rs1198124649 1212 dbSNP
rs1017002657 1214 dbSNP
rs540739561 1215 dbSNP
rs143810329 1216 dbSNP
rs184346673 1217 dbSNP
rs1032503561 1219 dbSNP
rs893942372 1220 dbSNP
rs1439597916 1227 dbSNP
rs761918185 1240 dbSNP
rs760166280 1243 dbSNP
rs1387506041 1244 dbSNP
rs1026285790 1246 dbSNP
rs1425383089 1250 dbSNP
rs1164358160 1251 dbSNP
rs955655667 1254 dbSNP
rs1021024845 1255 dbSNP
rs1472575541 1255 dbSNP
rs1364562297 1257 dbSNP
rs1348343935 1258 dbSNP
rs767119114 1259 dbSNP
rs148150711 1262 dbSNP
rs1479656755 1265 dbSNP
rs752317427 1270 dbSNP
rs1223875568 1273 dbSNP
rs1377624632 1274 dbSNP
rs1017953266 1277 dbSNP
rs963742796 1287 dbSNP
rs771835759 1292 dbSNP
rs1355244287 1293 dbSNP
rs1279717564 1298 dbSNP
rs113538393 1302 dbSNP
rs1348319169 1307 dbSNP
rs1287716508 1308 dbSNP
rs117992873 1311 dbSNP
rs1351730263 1311 dbSNP
rs528157613 1312 dbSNP
rs1404791226 1315 dbSNP
rs1385965500 1316 dbSNP
rs1160446523 1324 dbSNP
rs377655982 1334 dbSNP
rs928509351 1336 dbSNP
rs1411672886 1337 dbSNP
rs1200840667 1339 dbSNP
rs1481686432 1346 dbSNP
rs938615055 1349 dbSNP
rs1056150491 1351 dbSNP
rs752893320 1359 dbSNP
rs78305399 1360 dbSNP
rs1319550294 1365 dbSNP
rs1210201845 1368 dbSNP
rs1038392259 1374 dbSNP
rs929118460 1376 dbSNP
rs983178023 1378 dbSNP
rs1267230698 1380 dbSNP
rs1456899250 1380 dbSNP
rs560179922 1381 dbSNP
rs994707650 1384 dbSNP
rs1047227326 1385 dbSNP
rs550486832 1391 dbSNP
rs1327098377 1395 dbSNP
rs1473362152 1395 dbSNP
rs189969462 1399 dbSNP
rs1388417451 1408 dbSNP
rs1018569023 1409 dbSNP
rs963690764 1410 dbSNP
rs1423698972 1411 dbSNP
rs546402087 1411 dbSNP
rs1477445590 1416 dbSNP
rs867655486 1424 dbSNP
rs1021357117 1428 dbSNP
rs1411847949 1430 dbSNP
rs777303490 1433 dbSNP
rs1190158408 1435 dbSNP
rs1171597060 1441 dbSNP
rs1399689492 1442 dbSNP
rs949769656 1448 dbSNP
rs370487073 1456 dbSNP
rs1044450917 1464 dbSNP
rs1448570233 1466 dbSNP
rs1276502251 1476 dbSNP
rs773558976 1482 dbSNP
rs1340207577 1483 dbSNP
rs1299879010 1486 dbSNP
rs757031802 1489 dbSNP
rs1337568445 1502 dbSNP
rs539244401 1505 dbSNP
rs1376635080 1508 dbSNP
rs1357778161 1510 dbSNP
rs928480249 1510 dbSNP
rs531882722 1511 dbSNP
rs960173044 1513 dbSNP
rs938270264 1527 dbSNP
rs1169965247 1530 dbSNP
rs1447072718 1531 dbSNP
rs1389174653 1532 dbSNP
rs767572462 1532 dbSNP
rs1484146744 1533 dbSNP
rs553930264 1534 dbSNP
rs1053999853 1535 dbSNP
rs1196192376 1537 dbSNP
rs1276628951 1541 dbSNP
rs893994390 1551 dbSNP
rs915845713 1557 dbSNP
rs1341460940 1559 dbSNP
rs755926075 1563 dbSNP
rs546405384 1564 dbSNP
rs1377493564 1565 dbSNP
rs10117044 1569 dbSNP
rs878883486 1583 dbSNP
rs1443328292 1588 dbSNP
rs1372964738 1589 dbSNP
rs536388682 1590 dbSNP
rs1008935498 1592 dbSNP
rs1047627660 1594 dbSNP
rs1165104758 1594 dbSNP
rs1369389202 1594 dbSNP
rs1478985764 1596 dbSNP
rs1472762703 1598 dbSNP
rs1253888738 1601 dbSNP
rs1018032823 1602 dbSNP
rs1423114087 1603 dbSNP
rs1476916778 1611 dbSNP
rs1174387211 1613 dbSNP
rs752109598 1619 dbSNP
rs891283864 1620 dbSNP
rs1414991861 1625 dbSNP
rs964705368 1627 dbSNP
rs1312214301 1632 dbSNP
rs1333384095 1634 dbSNP
rs554521206 1642 dbSNP
rs1409730136 1643 dbSNP
rs41270107 1643 dbSNP
rs1039957274 1645 dbSNP
rs867696524 1649 dbSNP
rs950583784 1650 dbSNP
rs1298490927 1655 dbSNP
rs753485120 1660 dbSNP
rs1293637878 1667 dbSNP
rs983228747 1674 dbSNP
rs781245953 1676 dbSNP
rs1458949031 1678 dbSNP
rs917044103 1681 dbSNP
rs1339437413 1685 dbSNP
rs543276899 1689 dbSNP
rs1457629464 1690 dbSNP
rs979842565 1691 dbSNP
rs967487963 1692 dbSNP
rs998601833 1693 dbSNP
rs528890812 1694 dbSNP
rs1487510372 1697 dbSNP
rs1265151676 1698 dbSNP
rs1035870599 1705 dbSNP
rs558834333 1707 dbSNP
rs1331721467 1709 dbSNP
rs959876377 1710 dbSNP
rs1469224031 1711 dbSNP
rs576915731 1717 dbSNP
rs1346719122 1721 dbSNP
rs181229830 1723 dbSNP
rs1054051513 1726 dbSNP
rs1364866398 1727 dbSNP
rs1489485146 1736 dbSNP
rs1435331525 1737 dbSNP
rs1390609327 1739 dbSNP
rs770004989 1741 dbSNP
rs945568324 1742 dbSNP
rs1262828154 1743 dbSNP
rs1378144050 1743 dbSNP
rs1042573636 1760 dbSNP
rs890597455 1768 dbSNP
rs186165493 1770 dbSNP
rs1189501399 1773 dbSNP
rs1266733859 1773 dbSNP
rs1201156437 1778 dbSNP
rs919933045 1779 dbSNP
rs1378310775 1784 dbSNP
rs150642113 1790 dbSNP
rs900515422 1791 dbSNP
rs1309978128 1795 dbSNP
rs1302022763 1796 dbSNP
rs1228437631 1800 dbSNP
rs994784760 1805 dbSNP
rs1318047267 1807 dbSNP
rs1393178756 1811 dbSNP
rs1402628818 1812 dbSNP
rs11557562 1813 dbSNP
rs1304565802 1815 dbSNP
rs1027553260 1816 dbSNP
rs1421353188 1818 dbSNP
rs1298543057 1821 dbSNP
rs1359554505 1822 dbSNP
rs1380189504 1824 dbSNP
rs1325070862 1825 dbSNP
rs773331228 1829 dbSNP
rs866415995 1831 dbSNP
rs944159536 1831 dbSNP
rs1451345744 1832 dbSNP
rs1273644001 1834 dbSNP
rs541976768 1838 dbSNP
rs1241382141 1839 dbSNP
rs1285730524 1843 dbSNP
rs1258673538 1848 dbSNP
rs1351910943 1849 dbSNP
rs976065752 1850 dbSNP
rs550804968 1852 dbSNP
rs1275906402 1854 dbSNP
rs1343679719 1860 dbSNP
rs547498176 1860 dbSNP
rs1043357042 1862 dbSNP
rs1226213180 1863 dbSNP
rs1340886935 1866 dbSNP
rs190446935 1870 dbSNP
rs530537633 1873 dbSNP
rs1196836229 1876 dbSNP
rs1251102340 1880 dbSNP
rs998944473 1880 dbSNP
rs1035416105 1884 dbSNP
rs895560890 1887 dbSNP
rs550181741 1889 dbSNP
rs140055182 1890 dbSNP
rs771175549 1891 dbSNP
rs181946148 1892 dbSNP
rs1164655023 1893 dbSNP
rs757941366 1894 dbSNP
rs551589125 1898 dbSNP
rs957053722 1910 dbSNP
rs1390990218 1912 dbSNP
rs1356643430 1914 dbSNP
rs989795536 1915 dbSNP
rs760111236 1919 dbSNP
rs915532504 1920 dbSNP
rs768139360 1929 dbSNP
rs1042608012 1930 dbSNP
rs1411556406 1934 dbSNP
rs1348747873 1937 dbSNP
rs912067547 1940 dbSNP
rs963213982 1940 dbSNP
rs1405974955 1941 dbSNP
rs1393156317 1942 dbSNP
rs944864765 1944 dbSNP
rs1413138672 1945 dbSNP
rs141972898 1945 dbSNP
rs1185023724 1950 dbSNP
rs566703509 1951 dbSNP
rs1309082257 1954 dbSNP
rs900567058 1957 dbSNP
rs1180489873 1959 dbSNP
rs1451611803 1960 dbSNP
rs994836106 1961 dbSNP
rs1049042823 1968 dbSNP
rs1333955771 1969 dbSNP
rs1268487971 1974 dbSNP
rs1229955536 1976 dbSNP
rs1247424868 1977 dbSNP
rs1266327969 1982 dbSNP
rs1278821880 1989 dbSNP
rs1437366171 1990 dbSNP
rs565981273 1993 dbSNP
rs186555025 1997 dbSNP
rs1355865188 2002 dbSNP
rs536330388 2004 dbSNP
rs1004759298 2006 dbSNP
rs1458236319 2008 dbSNP
rs1024199751 2009 dbSNP
rs1455925584 2009 dbSNP
rs1411877822 2011 dbSNP
rs1247925016 2013 dbSNP
rs191947037 2013 dbSNP
rs1417146938 2016 dbSNP
rs1189357150 2022 dbSNP
rs1001360482 2025 dbSNP
rs1472249435 2033 dbSNP
rs146294439 2034 dbSNP
rs1401848210 2035 dbSNP
rs921425386 2043 dbSNP
rs957102681 2045 dbSNP
rs745906120 2046 dbSNP
rs569685449 2049 dbSNP
rs1273187733 2056 dbSNP
rs1233597698 2058 dbSNP
rs1322734375 2059 dbSNP
rs1366218716 2059 dbSNP
rs1433431721 2059 dbSNP
rs989866044 2060 dbSNP
rs1331327866 2061 dbSNP
rs112683111 2063 dbSNP
rs967014575 2064 dbSNP
rs1171221213 2065 dbSNP
rs558529252 2066 dbSNP
rs763760150 2067 dbSNP
rs1190098467 2071 dbSNP
rs934308578 2074 dbSNP
rs1057202746 2076 dbSNP
rs112638758 2077 dbSNP
rs1444090140 2078 dbSNP
rs182958765 2083 dbSNP
rs1210262821 2084 dbSNP
rs1342956089 2085 dbSNP
rs1300166345 2086 dbSNP
rs1226426342 2094 dbSNP
rs541011517 2097 dbSNP
rs1361742245 2098 dbSNP
rs1318714140 2101 dbSNP
rs1022701147 2102 dbSNP
rs1198078603 2105 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000380432.2 | 3UTR | UCAAGUUUUUUUUUCCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
269 hsa-miR-548ah-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055349 PDCD4 programmed cell death 4 2 2
MIRT078710 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT088880 FOXN2 forkhead box N2 2 10
MIRT099612 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT111805 MPZL1 myelin protein zero like 1 2 2
MIRT166778 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 2
MIRT221310 LMBR1 limb development membrane protein 1 2 2
MIRT269387 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT309062 C4ORF3 chromosome 4 open reading frame 3 2 2
MIRT318550 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT325436 CKS2 CDC28 protein kinase regulatory subunit 2 2 2
MIRT331326 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT336802 ARF1 ADP ribosylation factor 1 2 4
MIRT350505 MRGBP MRG domain binding protein 2 6
MIRT374401 M6PR mannose-6-phosphate receptor, cation dependent 2 4
MIRT399357 IER2 immediate early response 2 2 2
MIRT401033 MOB1B MOB kinase activator 1B 2 4
MIRT441729 HAUS6 HAUS augmin like complex subunit 6 2 2
MIRT442381 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442407 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT443989 GJD3 gap junction protein delta 3 2 4
MIRT444047 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT444245 CHMP1B charged multivesicular body protein 1B 2 2
MIRT444402 FRMD5 FERM domain containing 5 2 2
MIRT444463 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT444644 HSBP1 heat shock factor binding protein 1 2 2
MIRT444854 EXD2 exonuclease 3'-5' domain containing 2 2 2
MIRT444988 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445107 ZNF207 zinc finger protein 207 2 2
MIRT445449 HSPA14 heat shock protein family A (Hsp70) member 14 2 4
MIRT445515 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 4
MIRT445590 RCC2 regulator of chromosome condensation 2 2 2
MIRT445679 TNFSF15 TNF superfamily member 15 2 2
MIRT445733 PGK1 phosphoglycerate kinase 1 2 2
MIRT445827 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT445996 CD1D CD1d molecule 2 2
MIRT446068 RABIF RAB interacting factor 2 2
MIRT446146 ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 2 2
MIRT446302 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446426 ABHD2 abhydrolase domain containing 2 2 2
MIRT447263 C3orf30 chromosome 3 open reading frame 30 2 2
MIRT447692 MTPAP mitochondrial poly(A) polymerase 2 2
MIRT447753 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447883 LMAN1 lectin, mannose binding 1 2 2
MIRT448032 GSR glutathione-disulfide reductase 2 2
MIRT448155 P2RY10 purinergic receptor P2Y10 2 2
MIRT448215 SNAI2 snail family transcriptional repressor 2 2 2
MIRT448414 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT448890 DENND4C DENN domain containing 4C 2 2
MIRT449043 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT449269 PALM2 paralemmin 2 2 2
MIRT449571 GPC5 glypican 5 2 4
MIRT450116 IMP3 IMP3, U3 small nucleolar ribonucleoprotein 2 2
MIRT450149 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT450606 EXOC2 exocyst complex component 2 2 2
MIRT459247 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT464464 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465114 TSC22D2 TSC22 domain family member 2 2 4
MIRT466778 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 4
MIRT467990 SKIL SKI like proto-oncogene 2 4
MIRT469263 RHOB ras homolog family member B 2 2
MIRT470717 POGK pogo transposable element derived with KRAB domain 2 2
MIRT472380 NEK7 NIMA related kinase 7 2 2
MIRT475022 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT475248 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 2
MIRT475678 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT479405 CDKN1B cyclin dependent kinase inhibitor 1B 2 10
MIRT482621 ABCE1 ATP binding cassette subfamily E member 1 2 2
MIRT490488 FEM1C fem-1 homolog C 2 2
MIRT492176 SOX4 SRY-box 4 2 10
MIRT493559 HSPA5 heat shock protein family A (Hsp70) member 5 2 2
MIRT494647 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT497510 ZNF652 zinc finger protein 652 2 4
MIRT499150 HSPA1B heat shock protein family A (Hsp70) member 1B 2 8
MIRT502081 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT502824 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT503936 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504229 MYO6 myosin VI 2 2
MIRT506016 PURA purine rich element binding protein A 2 2
MIRT506416 NHLRC3 NHL repeat containing 3 2 6
MIRT508022 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508293 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT508358 HES7 hes family bHLH transcription factor 7 2 6
MIRT510848 RARB retinoic acid receptor beta 2 6
MIRT511509 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT511980 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT512301 AMER1 APC membrane recruitment protein 1 2 6
MIRT515651 MYBPC1 myosin binding protein C, slow type 2 2
MIRT518423 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase 2 2
MIRT519692 ZNF620 zinc finger protein 620 2 2
MIRT521598 PSMA2 proteasome subunit alpha 2 2 4
MIRT527241 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT527279 FBLN2 fibulin 2 2 2
MIRT527377 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT527448 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT528342 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529098 ZNF100 zinc finger protein 100 2 2
MIRT529661 ZNF81 zinc finger protein 81 2 2
MIRT530057 TRIM72 tripartite motif containing 72 2 2
MIRT530271 MKRN3 makorin ring finger protein 3 2 2
MIRT530873 TRUB1 TruB pseudouridine synthase family member 1 2 2
MIRT531246 FANCC Fanconi anemia complementation group C 2 2
MIRT531408 TMEM18 transmembrane protein 18 2 2
MIRT534421 SEMA4F ssemaphorin 4F 2 2
MIRT534500 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT534765 RASGEF1A RasGEF domain family member 1A 2 2
MIRT534942 PTBP3 polypyrimidine tract binding protein 3 2 2
MIRT536972 HAS3 hyaluronan synthase 3 2 2
MIRT537633 ERI1 exoribonuclease 1 2 2
MIRT537720 ELK3 ELK3, ETS transcription factor 2 2
MIRT538772 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT540958 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541274 GPC4 glypican 4 2 4
MIRT543347 ZNF829 zinc finger protein 829 2 2
MIRT543617 MFAP3 microfibril associated protein 3 2 2
MIRT543644 YY2 YY2 transcription factor 2 2
MIRT544227 GTF2B general transcription factor IIB 2 2
MIRT544413 ZSCAN12 zinc finger and SCAN domain containing 12 2 2
MIRT544939 SNCB synuclein beta 2 2
MIRT545321 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT546088 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT548516 DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 2 2
MIRT548632 DAZAP1 DAZ associated protein 1 2 4
MIRT551028 SPPL3 signal peptide peptidase like 3 2 2
MIRT552058 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 4
MIRT553268 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT553297 TSPAN3 tetraspanin 3 2 2
MIRT553613 TM7SF3 transmembrane 7 superfamily member 3 2 2
MIRT554201 SLC35D1 solute carrier family 35 member D1 2 2
MIRT554795 RGPD4 RANBP2-like and GRIP domain containing 4 2 2
MIRT554838 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT555709 PDZD8 PDZ domain containing 8 2 2
MIRT556063 MTF2 metal response element binding transcription factor 2 2 4
MIRT557999 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT558674 CNIH cornichon family AMPA receptor auxiliary protein 1 1 1
MIRT558954 CBFB core-binding factor beta subunit 2 2
MIRT559026 C20orf24 chromosome 20 open reading frame 24 2 2
MIRT559103 C18orf25 chromosome 18 open reading frame 25 2 2
MIRT559858 GSKIP GSK3B interacting protein 2 2
MIRT561591 SKI SKI proto-oncogene 2 2
MIRT562262 GRB2 growth factor receptor bound protein 2 2 2
MIRT562413 EIF2S2 eukaryotic translation initiation factor 2 subunit beta 2 2
MIRT562646 ARID1A AT-rich interaction domain 1A 2 4
MIRT564273 DEPDC1B DEP domain containing 1B 2 2
MIRT565301 TMEM64 transmembrane protein 64 2 2
MIRT565392 TGFBR3 transforming growth factor beta receptor 3 2 2
MIRT566564 OTUD4 OTU deubiquitinase 4 2 2
MIRT566708 MTMR3 myotubularin related protein 3 2 2
MIRT566784 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT568411 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT571817 PHF19 PHD finger protein 19 2 2
MIRT571989 HOXA9 homeobox A9 2 2
MIRT573750 KHSRP KH-type splicing regulatory protein 2 2
MIRT573993 DDX21 DExD-box helicase 21 2 2
MIRT574488 RPS16 ribosomal protein S16 2 2
MIRT574507 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT574553 NRBF2 nuclear receptor binding factor 2 2 2
MIRT576680 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT608353 ZRANB1 zinc finger RANBP2-type containing 1 2 2
MIRT608634 ATP9A ATPase phospholipid transporting 9A (putative) 2 6
MIRT609179 ZNF581 zinc finger protein 581 2 2
MIRT609792 NHSL1 NHS like 1 2 2
MIRT610675 SYT2 synaptotagmin 2 2 4
MIRT610880 NUDCD3 NudC domain containing 3 2 2
MIRT611024 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT611670 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT612067 PDGFRA platelet derived growth factor receptor alpha 2 2
MIRT612486 SLC25A11 solute carrier family 25 member 11 2 2
MIRT612648 PSPC1 paraspeckle component 1 2 2
MIRT612688 PLXNA4 plexin A4 2 2
MIRT613108 ESR1 estrogen receptor 1 2 2
MIRT613549 AMPD3 adenosine monophosphate deaminase 3 2 2
MIRT614532 SUB1 SUB1 homolog, transcriptional regulator 2 2
MIRT614569 GMPR guanosine monophosphate reductase 2 2
MIRT614661 ZNF608 zinc finger protein 608 2 2
MIRT614675 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT615313 CCDC158 coiled-coil domain containing 158 2 2
MIRT616112 GGCX gamma-glutamyl carboxylase 2 2
MIRT617750 MICA MHC class I polypeptide-related sequence A 2 2
MIRT618797 ZIC2 Zic family member 2 2 2
MIRT619227 FUNDC2 FUN14 domain containing 2 2 2
MIRT620281 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT620491 XKR6 XK related 6 2 2
MIRT622613 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT622967 OXSR1 oxidative stress responsive 1 2 2
MIRT623482 KDM5A lysine demethylase 5A 2 2
MIRT623626 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT623699 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT624815 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT625188 GRIK4 glutamate ionotropic receptor kainate type subunit 4 2 2
MIRT625367 CDKL2 cyclin dependent kinase like 2 2 2
MIRT625919 GBP6 guanylate binding protein family member 6 2 2
MIRT625962 RNF2 ring finger protein 2 2 2
MIRT626264 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT626425 ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 2 2
MIRT626851 FDX1 ferredoxin 1 2 2
MIRT628014 MEF2C myocyte enhancer factor 2C 2 2
MIRT628047 LIMD1 LIM domains containing 1 2 2
MIRT628360 CCDC117 coiled-coil domain containing 117 2 2
MIRT628461 ANAPC16 anaphase promoting complex subunit 16 2 2
MIRT630929 UNC93A unc-93 homolog A 2 2
MIRT635226 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT635478 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT638149 TTC26 tetratricopeptide repeat domain 26 2 2
MIRT638295 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT638431 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT640275 TCF24 transcription factor 24 2 2
MIRT641183 STX4 syntaxin 4 2 2
MIRT642295 ZNF99 zinc finger protein 99 2 2
MIRT643270 ZNF566 zinc finger protein 566 2 2
MIRT643581 CTNNA3 catenin alpha 3 2 2
MIRT644173 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644433 VDR vitamin D receptor 2 2
MIRT644614 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644855 PGM2 phosphoglucomutase 2 2 2
MIRT645449 ATF6B activating transcription factor 6 beta 2 2
MIRT647203 ZNF583 zinc finger protein 583 2 2
MIRT649421 CDC14B cell division cycle 14B 2 2
MIRT650499 UFM1 ubiquitin fold modifier 1 2 2
MIRT650695 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT651209 ZNF280B zinc finger protein 280B 2 2
MIRT653782 SIX4 SIX homeobox 4 2 2
MIRT655057 PKN2 protein kinase N2 2 2
MIRT655707 NUDT21 nudix hydrolase 21 2 2
MIRT656943 KIAA1456 KIAA1456 2 2
MIRT658275 FAXC failed axon connections homolog 2 2
MIRT658519 ETV3 ETS variant 3 2 2
MIRT658655 ENAH ENAH, actin regulator 2 2
MIRT658688 EMP2 epithelial membrane protein 2 2 2
MIRT659241 CXCR5 C-X-C motif chemokine receptor 5 2 2
MIRT659289 CTDSPL2 CTD small phosphatase like 2 2 2
MIRT660101 BTBD3 BTB domain containing 3 2 2
MIRT660463 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT663648 INTU inturned planar cell polarity protein 2 2
MIRT664065 KIAA1551 KIAA1551 2 2
MIRT666140 SPATS2L spermatogenesis associated serine rich 2 like 2 2
MIRT675549 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT684998 RPL10A ribosomal protein L10a 2 2
MIRT685687 TRIM45 tripartite motif containing 45 2 2
MIRT687485 NHLRC2 NHL repeat containing 2 2 2
MIRT687799 KCNJ15 potassium voltage-gated channel subfamily J member 15 2 2
MIRT687911 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT687962 HHIP hedgehog interacting protein 2 2
MIRT689214 ZNF574 zinc finger protein 574 2 2
MIRT689481 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT690495 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT692284 XRN2 5'-3' exoribonuclease 2 2 2
MIRT693054 KIAA1324 KIAA1324 2 2
MIRT697437 ZFHX3 zinc finger homeobox 3 2 2
MIRT698469 TJP1 tight junction protein 1 2 2
MIRT699027 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699779 SEMA4D semaphorin 4D 2 2
MIRT701863 MRO maestro 2 2
MIRT702152 MAP3K1 mitogen-activated protein kinase kinase kinase 1 2 2
MIRT702235 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT703744 FAM126B family with sequence similarity 126 member B 2 2
MIRT704271 DGS2 DiGeorge syndrome/velocardiofacial syndrome complex 2 2 2
MIRT707745 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT709855 SNX12 sorting nexin 12 2 2
MIRT712741 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 2
MIRT712948 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT713142 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT715529 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT718275 ZNF749 zinc finger protein 749 2 2
MIRT720146 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT722713 ZNF460 zinc finger protein 460 2 2
MIRT723253 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT724240 DGKE diacylglycerol kinase epsilon 2 2
MIRT725076 WTIP WT1 interacting protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548ah-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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