miRTarBase - #MIRT449013


—
pre-miRNA Information
pre-miRNA hsa-mir-4699   
Genomic Coordinates chr12: 81158388 - 81158461
Description Homo sapiens miR-4699 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4699-3p
Sequence 46| AAUUUACUCUGCAAUCUUCUCC |67
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN20804631 9 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1419816940 6 dbSNP
rs919201645 9 dbSNP
rs950685323 11 dbSNP
rs985212635 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ANKRD17   
Synonyms GTAR, MASK2, NY-BR-16
Description ankyrin repeat domain 17
Transcript NM_032217   
Other Transcripts NM_198889   
Expression
Putative miRNA Targets on ANKRD17
3'UTR of ANKRD17
(miRNA target sites are highlighted)		 
>ANKRD17|NM_032217|3'UTR
   1 TGAGGATCAGCTTGTTAGCCTGCAGATTCCTTTTCATTTGGAGGAAATCACAAGTGGCCGAAAAAAAAAATTATGCTCCC
  81 AAATCATTCTACTGATGTGCTTGACTGAAGTGTGTAGGCTTTTTGCAGAAGATCTTACTAACTGACCTATTTTCTGTGAA
 161 CATTTGTGACTGCCCATTCCCCATCATCATCCGTTTTACCTTAGTTAGCATTTTTCTTATCATTTTTCTTTTTTTCTTTC
 241 CCTCTTCCCCTTTGGACATAACTTTCTGTTGAAGCTGTTCTTTGGCTGGTTGGTTTTAGTACTGTAAACTGCTTCTGAGC
 321 AAACACGGAAATTTAGCAAAATTATGTAAACTTGATCCTGAAGTTTTAGAATGGCAAATAAATGTACAATTGTTTACATA
 401 ACAGAAAAGGCTAAGCAGAAAGTAAATTTCAATATGTCAGTATAGAGGCTCTACTTTATGTAGACTTAAATTAATGTGAG
 481 ATATGTACCTTCATATTCAGAAATCTGGATGTTTCCTTCATACATTAAACTATTAATAAGCATAACTTTTCTACTGGTGT
 561 AATTTAAGTATAAAGTAAAATAATGGGCATTATCATTGGATGTTTCCCCACATTGGCTTTTAAAATACCCATCTTGCTTT
 641 CTTTTTGGTTTATTTGTAGCAAGGCACATATAGAAGAAGAAATTTCTGGCTTTTCCATGTTGTTTTATTACCTTTTCTCA
 721 CTTTTAAAACTAATACAGACTTATCTCCTCACTCCTTTTTCTCTCCTTACCTTTACCACTAATACCAGTAAAATTATCTT
 801 TCTGATAGTGAAAAGGTTCTGTCAAGATTTTCACTGTAATGGCTGCTACAGAGATGGACCATCTTCATCATCACCAGTGG
 881 TTTCTTCTAATTATAAAATGTTTAAACTTTCTGAGAATTTAAAAAGCCACCACTGTTCCCAGTCAGCATATACAAGCTCT
 961 TAATATTCTGTTTATTAAATAATTCAATGTACTATTTTATATTGGATGATATTGATTCTTAACATTGGCTTTTCAGTCAT
1041 CAACAGTCAACATAAAAATTTCAATTTTCAGTAATTTAGTGGAAAATATCTTATTTCTTTTTTCAATTTTAAAGGCTTCC
1121 TGCTTTTTTACCCTTGTATATTATCAGTGAAAAGGATCAACAGTTAATTTGAGCCAAGTAATAAAAGAAATTCTGCATTT
1201 GTCACGAAGACAATTTATGGTAGACAGATAAATACACAGATTACAGTGTAAAGTCTCCATTTAACCTGTTTATAAAAGAT
1281 ACAAGGCCACACTAAACTACTCAGTGGGATTTATATATTCCATCCACTTGAAACAATAAACAGTAATGTATCCAAGAAGA
1361 TTATGTGTCCTACCCTGTCTCATGGAAAAATTAATTATATGGTTGAAATGTAAAAGAAAGTAAGCATAAAAATCGAGTAA
1441 TGTATATATCAATTTGTCTTCTTTTTTTTTAATTAGACATAAAATTTCACACTGGTAAAACATAAAAACTAACTAAAATT
1521 CATATAAATCACCTAGAGTTGATGATATTAACATGGTTCCTTGGTTGTCAAGTAAATCAAATGATTTCTTCCATCTGAGT
1601 AAAGAGTAAAGCCTGAGTAAAGAGTAAAAAGATGACTTCTCAAACATATCCAGAAATTTGTAAACAGTACACTCATATCT
1681 TTTAGTTTAAGAAGTGGTCTTAAAATATATAAATTTGTTTTTCCACCTATGTTTAATATGCCCAAATTTAAAGGGAGAGC
1761 TAAAAGACAGCCTACAAATAAATATAGCTATGAAATAAAATTATAGCACTTTACTAAAAAAGGGATGTAATAATGTTATT
1841 TAACGAAGTATTTTATATATGACTTGCCACTATTCTATACATAAAATTTTTTTTCTTAATTCTTTCCTGTGTTAACTAGG
1921 GTTATTTTCTATTTAAGGTAATCCTGCTGGAGAACAGATGCTATCCAATATTTATTACAACACATGAGTTGTGTTGTTTC
2001 ACAATACTGAATTTCTTAGGTGAGGTATTTTATTTAAAAAGGAGGGGGAAAACTCCTATATTTTCTTGACTTCAAACCTG
2081 TGGGGCCAGGGGATATAGATTGAAATGCTCCGTATTTAGTCTTGGGGATCAGGCTTGTTTAGTACAATACCATGGTTTTA
2161 GAAGTCTGTACTAGGAACATTTTTAAAATACATTTTTTATATTTCAGATGTAATGCAGTGCACTTTTATTTGAACAATAA
2241 AAAAACCCATAACTTTTTGAGACCAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccUCUUCUAA--CGUC--UCAUUUAa 5'
            | |||: |  ||||  ||||||| 
Target 5' agAAAAGGCTAAGCAGAAAGTAAATt 3'
 403 - 428 160.00 -11.10
2 
miRNA  3' ccucuuCUAACGUCUCAUUUAa 5'
                |:|||:  ||||||| 
Target 5' ttccttGGTTGTCAAGTAAATc 3'
 1557 - 1578 156.00 -8.80
3 
miRNA  3' ccucuuCUAACGUCUCAUUUaa 5'
                || |  ||||||||  
Target 5' ccatctGAGTAAAGAGTAAAgc 3'
 1591 - 1612 136.00 -7.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31501006 5 COSMIC
COSN30509249 7 COSMIC
COSN30689579 38 COSMIC
COSN20121469 60 COSMIC
COSN26670673 60 COSMIC
COSN30167659 64 COSMIC
COSN30177527 74 COSMIC
COSN31493118 78 COSMIC
COSN30107520 85 COSMIC
COSN30160393 85 COSMIC
COSN26507502 236 COSMIC
COSN31571135 236 COSMIC
COSN28201585 268 COSMIC
COSN25329110 271 COSMIC
COSN31610771 386 COSMIC
COSN2457445 590 COSMIC
COSN31517577 673 COSMIC
COSN2043989 827 COSMIC
COSN16832988 834 COSMIC
COSN20327575 1064 COSMIC
COSN31530062 1206 COSMIC
COSN17418746 1275 COSMIC
COSN6843035 1362 COSMIC
COSN30174913 1381 COSMIC
COSN27149463 1499 COSMIC
COSN10034792 1555 COSMIC
COSN32064871 2222 COSMIC
COSN10034791 2524 COSMIC
COSN15669911 2584 COSMIC
COSN5017366 2669 COSMIC
COSN9240732 2678 COSMIC
COSN17044035 2697 COSMIC
COSN31778386 2753 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs778581397 2 dbSNP
rs1178400799 4 dbSNP
rs1436745704 7 dbSNP
rs377560612 10 dbSNP
rs754801424 12 dbSNP
rs368984945 15 dbSNP
rs1441444238 20 dbSNP
rs1368017810 24 dbSNP
rs1432029934 26 dbSNP
rs1251023147 29 dbSNP
rs1199656666 38 dbSNP
rs1482103851 39 dbSNP
rs1257332917 40 dbSNP
rs753871611 47 dbSNP
rs1352278313 50 dbSNP
rs1309195502 51 dbSNP
rs1274760691 54 dbSNP
rs926523536 55 dbSNP
rs1220985342 57 dbSNP
rs1478387753 58 dbSNP
rs1328690848 60 dbSNP
rs569692022 61 dbSNP
rs951919554 66 dbSNP
rs370914232 71 dbSNP
rs920401485 71 dbSNP
rs961757812 73 dbSNP
rs904621870 74 dbSNP
rs774167182 85 dbSNP
rs573072284 91 dbSNP
rs1049676685 95 dbSNP
rs1176497004 96 dbSNP
rs770426097 101 dbSNP
rs1455283768 118 dbSNP
rs1008515592 120 dbSNP
rs996820520 131 dbSNP
rs901067958 132 dbSNP
rs554708860 134 dbSNP
rs536313128 137 dbSNP
rs1391354944 144 dbSNP
rs1383119491 146 dbSNP
rs1489503426 166 dbSNP
rs1323524405 168 dbSNP
rs1287216657 182 dbSNP
rs1329831006 183 dbSNP
rs1438729197 183 dbSNP
rs1283957548 186 dbSNP
rs111440861 192 dbSNP
rs568891388 193 dbSNP
rs528123878 200 dbSNP
rs1270236832 209 dbSNP
rs1000827770 212 dbSNP
rs1208989811 218 dbSNP
rs908411388 220 dbSNP
rs1048136106 226 dbSNP
rs550332638 227 dbSNP
rs931017663 228 dbSNP
rs1199556390 231 dbSNP
rs1250348014 236 dbSNP
rs904707370 241 dbSNP
rs1020853392 245 dbSNP
rs1454676134 249 dbSNP
rs1162984064 258 dbSNP
rs1389244676 263 dbSNP
rs1407510782 265 dbSNP
rs1303850542 267 dbSNP
rs1370092624 268 dbSNP
rs1408076716 269 dbSNP
rs926364184 271 dbSNP
rs980411532 276 dbSNP
rs1336556262 289 dbSNP
rs745338634 304 dbSNP
rs183765814 316 dbSNP
rs571885262 320 dbSNP
rs1358390631 326 dbSNP
rs547266388 327 dbSNP
rs1273816747 338 dbSNP
rs1481808021 351 dbSNP
rs778434008 366 dbSNP
rs1250822336 369 dbSNP
rs1366289670 371 dbSNP
rs937325904 376 dbSNP
rs1424450473 381 dbSNP
rs1281348433 382 dbSNP
rs1367024489 387 dbSNP
rs528678191 389 dbSNP
rs1164852836 397 dbSNP
rs1401748112 402 dbSNP
rs917497036 410 dbSNP
rs1427963144 413 dbSNP
rs1299917444 422 dbSNP
rs905826005 424 dbSNP
rs993513280 425 dbSNP
rs930540415 428 dbSNP
rs777315116 432 dbSNP
rs1451280013 435 dbSNP
rs1246392545 436 dbSNP
rs1296843296 449 dbSNP
rs1339912771 459 dbSNP
rs1343710867 463 dbSNP
rs561102472 464 dbSNP
rs920471276 466 dbSNP
rs1482731205 494 dbSNP
rs956223094 496 dbSNP
rs1032220014 507 dbSNP
rs1198429966 515 dbSNP
rs1257830844 523 dbSNP
rs972302493 529 dbSNP
rs1178497133 532 dbSNP
rs755750639 546 dbSNP
rs557819151 555 dbSNP
rs1424520670 557 dbSNP
rs1197302591 565 dbSNP
rs1448162579 569 dbSNP
rs911645568 578 dbSNP
rs987148008 583 dbSNP
rs1465599432 585 dbSNP
rs192713686 597 dbSNP
rs747864098 600 dbSNP
rs780400703 611 dbSNP
rs1257465667 613 dbSNP
rs1319596150 628 dbSNP
rs1210350013 629 dbSNP
rs113470841 631 dbSNP
rs1296191606 631 dbSNP
rs1020485606 635 dbSNP
rs770468315 640 dbSNP
rs758705431 648 dbSNP
rs901205246 652 dbSNP
rs1040965017 658 dbSNP
rs151299808 671 dbSNP
rs1463947697 693 dbSNP
rs1188864063 706 dbSNP
rs1035783213 707 dbSNP
rs563421918 711 dbSNP
rs545108673 730 dbSNP
rs1431757074 734 dbSNP
rs750895338 743 dbSNP
rs931153763 744 dbSNP
rs1470386064 746 dbSNP
rs926333253 747 dbSNP
rs930614311 748 dbSNP
rs1381029929 755 dbSNP
rs1455147764 761 dbSNP
rs1304859035 773 dbSNP
rs1044867831 779 dbSNP
rs949017406 781 dbSNP
rs111335191 790 dbSNP
rs1174377902 804 dbSNP
rs1284602369 806 dbSNP
rs1345760657 807 dbSNP
rs1227337744 823 dbSNP
rs1265838167 832 dbSNP
rs1327613768 840 dbSNP
rs58799146 858 dbSNP
rs1488416009 870 dbSNP
rs911698051 876 dbSNP
rs1271067563 877 dbSNP
rs1425048032 880 dbSNP
rs934867660 888 dbSNP
rs924906069 890 dbSNP
rs1427152799 891 dbSNP
rs1409991645 894 dbSNP
rs978869949 905 dbSNP
rs1159503550 911 dbSNP
rs1349258724 927 dbSNP
rs1456269092 931 dbSNP
rs1304446840 936 dbSNP
rs765697977 940 dbSNP
rs931713909 943 dbSNP
rs1408688713 956 dbSNP
rs540475249 969 dbSNP
rs978826217 970 dbSNP
rs969036109 985 dbSNP
rs753942701 987 dbSNP
rs975509052 1002 dbSNP
rs965399279 1004 dbSNP
rs764323644 1006 dbSNP
rs1317993472 1015 dbSNP
rs1035835468 1021 dbSNP
rs1004219958 1023 dbSNP
rs780752233 1043 dbSNP
rs1001650034 1046 dbSNP
rs970540354 1046 dbSNP
rs1027028254 1062 dbSNP
rs887002853 1063 dbSNP
rs1177578316 1064 dbSNP
rs995917878 1066 dbSNP
rs1421807488 1077 dbSNP
rs1165435603 1090 dbSNP
rs573084338 1098 dbSNP
rs1395169599 1100 dbSNP
rs1428561585 1104 dbSNP
rs554776318 1105 dbSNP
rs1324576527 1106 dbSNP
rs1355952591 1115 dbSNP
rs1382328121 1130 dbSNP
rs1301879073 1131 dbSNP
rs897121009 1141 dbSNP
rs1449180410 1146 dbSNP
rs542821142 1148 dbSNP
rs1401088596 1157 dbSNP
rs1167898563 1162 dbSNP
rs559413818 1173 dbSNP
rs995328134 1175 dbSNP
rs575443948 1187 dbSNP
rs890312049 1193 dbSNP
rs775857243 1201 dbSNP
rs10092 1205 dbSNP
rs949079396 1206 dbSNP
rs921674594 1212 dbSNP
rs189596553 1220 dbSNP
rs1052505242 1223 dbSNP
rs1185181294 1225 dbSNP
rs1243684982 1229 dbSNP
rs1448756201 1233 dbSNP
rs1166200581 1235 dbSNP
rs935024062 1237 dbSNP
rs1410011734 1239 dbSNP
rs1174999578 1243 dbSNP
rs1237053663 1244 dbSNP
rs571173502 1246 dbSNP
rs553398049 1248 dbSNP
rs1339029668 1249 dbSNP
rs1489425320 1250 dbSNP
rs1265898437 1252 dbSNP
rs989079707 1282 dbSNP
rs1434947504 1286 dbSNP
rs1268909074 1290 dbSNP
rs1341607741 1294 dbSNP
rs1215232594 1310 dbSNP
rs112403152 1313 dbSNP
rs774304951 1315 dbSNP
rs1205369890 1332 dbSNP
rs1412334155 1346 dbSNP
rs567545122 1349 dbSNP
rs1464257858 1361 dbSNP
rs762936674 1362 dbSNP
rs980266234 1367 dbSNP
rs1475489429 1369 dbSNP
rs1190064559 1374 dbSNP
rs1422628260 1377 dbSNP
rs1470728298 1388 dbSNP
rs965804492 1392 dbSNP
rs573690401 1397 dbSNP
rs755872757 1398 dbSNP
rs549195822 1400 dbSNP
rs1328313427 1407 dbSNP
rs970214001 1415 dbSNP
rs1389681026 1421 dbSNP
rs1457014178 1421 dbSNP
rs1274296472 1425 dbSNP
rs1431583690 1425 dbSNP
rs1343901346 1426 dbSNP
rs184726926 1435 dbSNP
rs995575981 1441 dbSNP
rs1203148084 1442 dbSNP
rs1294622386 1454 dbSNP
rs1286278344 1455 dbSNP
rs961695575 1456 dbSNP
rs1019715138 1459 dbSNP
rs983161214 1462 dbSNP
rs1364077455 1464 dbSNP
rs78397762 1470 dbSNP
rs1015531096 1471 dbSNP
rs143788294 1471 dbSNP
rs57949038 1471 dbSNP
rs951443386 1480 dbSNP
rs11727957 1483 dbSNP
rs1410761448 1488 dbSNP
rs1469996641 1488 dbSNP
rs1362791096 1490 dbSNP
rs1179062930 1494 dbSNP
rs577746791 1505 dbSNP
rs557657399 1517 dbSNP
rs551850436 1523 dbSNP
rs1401750167 1535 dbSNP
rs1323455626 1536 dbSNP
rs900297137 1539 dbSNP
rs533176931 1546 dbSNP
rs905116586 1555 dbSNP
rs1221615321 1558 dbSNP
rs559659478 1560 dbSNP
rs1284235594 1564 dbSNP
rs1350042495 1580 dbSNP
rs369634646 1583 dbSNP
rs1236618097 1586 dbSNP
rs528423906 1592 dbSNP
rs947132114 1597 dbSNP
rs1457505555 1613 dbSNP
rs1289463136 1619 dbSNP
rs1490715842 1620 dbSNP
rs1013436597 1621 dbSNP
rs1222563463 1622 dbSNP
rs912924654 1624 dbSNP
rs1180140429 1629 dbSNP
rs1435643811 1629 dbSNP
rs1287927768 1632 dbSNP
rs1470700864 1633 dbSNP
rs192938206 1636 dbSNP
rs1217023219 1641 dbSNP
rs896193596 1642 dbSNP
rs1426641610 1645 dbSNP
rs938956814 1646 dbSNP
rs1354697349 1649 dbSNP
rs1279172235 1650 dbSNP
rs769300163 1658 dbSNP
rs1331106831 1662 dbSNP
rs1336167064 1675 dbSNP
rs928877086 1675 dbSNP
rs1312904654 1677 dbSNP
rs1361431047 1678 dbSNP
rs1246074904 1679 dbSNP
rs1273227469 1683 dbSNP
rs1336859023 1688 dbSNP
rs1237053013 1689 dbSNP
rs1197228755 1690 dbSNP
rs1250795472 1694 dbSNP
rs1438815887 1710 dbSNP
rs980318214 1715 dbSNP
rs1183311004 1717 dbSNP
rs1241840200 1717 dbSNP
rs1052219427 1719 dbSNP
rs970644860 1724 dbSNP
rs1372627319 1729 dbSNP
rs1332871952 1734 dbSNP
rs1460500971 1746 dbSNP
rs1302643608 1747 dbSNP
rs1404904098 1748 dbSNP
rs1397463868 1749 dbSNP
rs920083463 1753 dbSNP
rs1364208374 1760 dbSNP
rs771622097 1760 dbSNP
rs1334368648 1768 dbSNP
rs560860500 1800 dbSNP
rs1453354215 1802 dbSNP
rs1296747242 1804 dbSNP
rs934971998 1806 dbSNP
rs148634621 1812 dbSNP
rs747744636 1821 dbSNP
rs187605070 1844 dbSNP
rs1043281340 1847 dbSNP
rs1015581748 1855 dbSNP
rs1203466902 1866 dbSNP
rs986760239 1871 dbSNP
rs1467171152 1877 dbSNP
rs955336337 1881 dbSNP
rs1184793545 1884 dbSNP
rs947606716 1886 dbSNP
rs182973912 1887 dbSNP
rs996076657 1895 dbSNP
rs1373860379 1899 dbSNP
rs1039824982 1902 dbSNP
rs1198010188 1902 dbSNP
rs1174017332 1906 dbSNP
rs1408083758 1914 dbSNP
rs1479435584 1915 dbSNP
rs944233959 1919 dbSNP
rs879534131 1921 dbSNP
rs545044473 1930 dbSNP
rs912625960 1945 dbSNP
rs900350146 1948 dbSNP
rs1359708643 1952 dbSNP
rs982912271 1960 dbSNP
rs1383420041 1970 dbSNP
rs1295628991 1976 dbSNP
rs1330174171 1977 dbSNP
rs1221356645 1988 dbSNP
rs1284770758 1999 dbSNP
rs951459612 1999 dbSNP
rs919961535 2004 dbSNP
rs1260662653 2012 dbSNP
rs1021437993 2013 dbSNP
rs1207000565 2014 dbSNP
rs780733351 2020 dbSNP
rs969267666 2024 dbSNP
rs1480134788 2042 dbSNP
rs1023568364 2050 dbSNP
rs1013822339 2051 dbSNP
rs1480650268 2060 dbSNP
rs1158021280 2071 dbSNP
rs1446205949 2072 dbSNP
rs1283870692 2073 dbSNP
rs1052817543 2079 dbSNP
rs1203589555 2080 dbSNP
rs960593953 2089 dbSNP
rs77542918 2098 dbSNP
rs999316400 2106 dbSNP
rs903620806 2111 dbSNP
rs1222908919 2112 dbSNP
rs1220179218 2113 dbSNP
rs1306684943 2115 dbSNP
rs1344187590 2128 dbSNP
rs1280633702 2140 dbSNP
rs1401062968 2148 dbSNP
rs1241866553 2152 dbSNP
rs113449523 2161 dbSNP
rs1490225031 2169 dbSNP
rs565602782 2171 dbSNP
rs1315846038 2185 dbSNP
rs372626609 2187 dbSNP
rs552908137 2224 dbSNP
rs1271330481 2246 dbSNP
rs1490563985 2246 dbSNP
rs1176431945 2248 dbSNP
rs995817390 2249 dbSNP
rs1397442604 2250 dbSNP
rs368694859 2251 dbSNP
rs974259676 2252 dbSNP
rs1384517688 2263 dbSNP
rs1422227145 2265 dbSNP
rs900066963 2273 dbSNP
rs1175097952 2276 dbSNP
rs192635711 2282 dbSNP
rs1467725207 2296 dbSNP
rs746190473 2313 dbSNP
rs940146456 2317 dbSNP
rs779380257 2322 dbSNP
rs1171258155 2325 dbSNP
rs552957450 2326 dbSNP
rs1393493325 2327 dbSNP
rs1266128429 2329 dbSNP
rs1359270954 2333 dbSNP
rs1240162696 2341 dbSNP
rs1189310092 2347 dbSNP
rs1293984895 2351 dbSNP
rs908636335 2363 dbSNP
rs1204140916 2377 dbSNP
rs944186830 2377 dbSNP
rs1231391393 2380 dbSNP
rs912771883 2387 dbSNP
rs1243914550 2400 dbSNP
rs1177510850 2403 dbSNP
rs536203145 2408 dbSNP
rs930045273 2412 dbSNP
rs1164954466 2414 dbSNP
rs920023851 2418 dbSNP
rs975087911 2429 dbSNP
rs1408827289 2439 dbSNP
rs964643968 2446 dbSNP
rs1021918169 2449 dbSNP
rs1463860343 2465 dbSNP
rs974047591 2468 dbSNP
rs1260593069 2471 dbSNP
rs969403147 2472 dbSNP
rs1382727712 2475 dbSNP
rs754459569 2484 dbSNP
rs1317741477 2488 dbSNP
rs1380062583 2493 dbSNP
rs1271163158 2495 dbSNP
rs916489309 2505 dbSNP
rs1309415647 2514 dbSNP
rs1199068392 2515 dbSNP
rs567655486 2516 dbSNP
rs992123702 2526 dbSNP
rs1459795368 2533 dbSNP
rs1185385070 2539 dbSNP
rs1268822596 2546 dbSNP
rs1243667326 2556 dbSNP
rs1474804507 2562 dbSNP
rs1184194294 2563 dbSNP
rs960820761 2566 dbSNP
rs1030794981 2568 dbSNP
rs1340714295 2572 dbSNP
rs1405863430 2583 dbSNP
rs1468562108 2585 dbSNP
rs1339337619 2587 dbSNP
rs555633160 2595 dbSNP
rs1268451857 2598 dbSNP
rs1364373458 2598 dbSNP
rs1219526284 2600 dbSNP
rs1335662218 2603 dbSNP
rs537296342 2614 dbSNP
rs756274841 2615 dbSNP
rs1022018265 2617 dbSNP
rs995779555 2631 dbSNP
rs1213067114 2632 dbSNP
rs906891755 2644 dbSNP
rs900204514 2664 dbSNP
rs570186795 2667 dbSNP
rs371831161 2691 dbSNP
rs567791514 2693 dbSNP
rs752913117 2698 dbSNP
rs187872781 2699 dbSNP
rs1316816641 2722 dbSNP
rs1047202010 2726 dbSNP
rs1038986458 2728 dbSNP
rs1302796958 2732 dbSNP
rs930148648 2733 dbSNP
rs767663646 2747 dbSNP
rs1038493979 2752 dbSNP
rs1275173992 2764 dbSNP
rs1472995709 2767 dbSNP
rs1349655708 2785 dbSNP
rs1222045069 2786 dbSNP
rs576947224 2788 dbSNP
rs1488365924 2796 dbSNP
rs908687249 2802 dbSNP
rs879059148 2803 dbSNP
rs574537257 2804 dbSNP
rs1490726800 2808 dbSNP
rs948028251 2809 dbSNP
rs1240129552 2814 dbSNP
rs1205263395 2827 dbSNP
rs1437766181 2834 dbSNP
rs921292105 2839 dbSNP
rs1271435628 2843 dbSNP
rs1420391481 2850 dbSNP
rs1162968868 2852 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_032217 | 3UTR | UAUGUAAACUUGAUCCUGAAGUUUUAGAAUGGCAAAUAAAUGUACAAUUGUUUACAUAACAGAAAAGGCUAAGCAGAAAGUAAAUUUCAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_032217 | 3UTR | UAGCAAAAUUAUGUAAACUUGAUCCUGAAGUUUUAGAAUGGCAAAUAAAUGUACAAUUGUUUACAUAACAGAAAAGGCUAAGCAGAAAGUAAAUUUCAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_032217 | 3UTR | AAAUUUAGCAAAAUUAUGUAAACUUGAUCCUGAAGUUUUAGAAUGGCAAAUAAAUGUACAAUUGUUUACAUAACAGAAAAGGCUAAGCAGAAAGUAAAUUUCAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_032217 | 3UTR | UUUAGCAAAAUUAUGUAAACUUGAUCCUGAAGUUUUAGAAUGGCAAAUAAAUGUACAAUUGUUUACAUAACAGAAAAGGCUAAGCAGAAAGUAAAUUUCAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_032217 | 3UTR | GCAAAAUUAUGUAAACUUGAUCCUGAAGUUUUAGAAUGGCAAAUAAAUGUACAAUUGUUUACAUAACAGAAAAGGCUAAGCAGAAAGUAAAUUUCAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_032217 | 3UTR | UUAUGUAAACUUGAUCCUGAAGUUUUAGAAUGGCAAAUAAAUGUACAAUUGUUUACAUAACAGAAAAGGCUAAGCAGAAAGUAAAUUUCAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000358602.4 | 3UTR | UCAAGUAAAUCAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
88 hsa-miR-4699-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056239 RAB18 RAB18, member RAS oncogene family 2 2
MIRT080536 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 2
MIRT095600 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT128911 KMT2A lysine methyltransferase 2A 2 2
MIRT161904 FXR1 FMR1 autosomal homolog 1 2 4
MIRT177614 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 4
MIRT231364 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT285164 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT307337 SEC22C SEC22 homolog C, vesicle trafficking protein 2 2
MIRT317083 DEK DEK proto-oncogene 2 2
MIRT347692 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT358438 STC2 stanniocalcin 2 2 2
MIRT362592 PURB purine rich element binding protein B 2 4
MIRT441441 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT445264 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) 2 4
MIRT447097 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT449013 ANKRD17 ankyrin repeat domain 17 2 2
MIRT450358 SETD9 SET domain containing 9 2 2
MIRT454976 MYC MYC proto-oncogene, bHLH transcription factor 2 2
MIRT461922 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT465191 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT467685 SLC38A2 solute carrier family 38 member 2 2 4
MIRT468003 SKI SKI proto-oncogene 2 2
MIRT473127 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT476370 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477067 FAM208B family with sequence similarity 208 member B 2 4
MIRT479950 CBX4 chromobox 4 2 4
MIRT481092 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 2 2
MIRT481932 ANKRD11 ankyrin repeat domain 11 2 12
MIRT482239 AHCY adenosylhomocysteinase 2 2
MIRT485804 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT492026 TWF1 twinfilin actin binding protein 1 2 2
MIRT494389 CALM3 calmodulin 3 2 2
MIRT504115 GPR158 G protein-coupled receptor 158 2 2
MIRT506346 NUP54 nucleoporin 54 2 4
MIRT510081 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 4
MIRT521019 SLC8A1 solute carrier family 8 member A1 2 2
MIRT524709 BTBD3 BTB domain containing 3 2 2
MIRT524989 AGO2 argonaute 2, RISC catalytic component 2 6
MIRT525003 ACVR1B activin A receptor type 1B 2 2
MIRT528064 OLAH oleoyl-ACP hydrolase 2 2
MIRT528865 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT532182 DOCK7 dedicator of cytokinesis 7 2 2
MIRT533592 TOB1 transducer of ERBB2, 1 2 6
MIRT538835 C16orf70 chromosome 16 open reading frame 70 2 2
MIRT539488 ACVR1C activin A receptor type 1C 2 2
MIRT539542 ABCD2 ATP binding cassette subfamily D member 2 2 2
MIRT542123 VENTX VENT homeobox 2 2
MIRT542993 ELOVL5 ELOVL fatty acid elongase 5 2 2
MIRT543067 ATXN7L3B ataxin 7 like 3B 2 2
MIRT543370 CYB5B cytochrome b5 type B 2 2
MIRT545080 TSEN34 tRNA splicing endonuclease subunit 34 2 2
MIRT545258 TRIM36 tripartite motif containing 36 2 4
MIRT549144 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT549403 AKAP1 A-kinase anchoring protein 1 2 2
MIRT552143 MRPL34 mitochondrial ribosomal protein L34 2 2
MIRT554781 RHEBP1 RHEB pseudogene 1 2 4
MIRT555991 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT556425 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT558325 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT561357 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 2
MIRT562240 HMGB1 high mobility group box 1 2 2
MIRT562269 GOLT1B golgi transport 1B 2 2
MIRT564020 FAM103A1 family with sequence similarity 103 member A1 2 2
MIRT564832 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT565350 TMED2 transmembrane p24 trafficking protein 2 2 2
MIRT565678 SET SET nuclear proto-oncogene 2 2
MIRT576547 Txlna taxilin alpha 2 2
MIRT609358 ZNF664 zinc finger protein 664 2 2
MIRT610646 CTGF connective tissue growth factor 2 2
MIRT624681 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT637118 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT639955 PRRC2B proline rich coiled-coil 2B 2 2
MIRT644051 WWC2 WW and C2 domain containing 2 2 2
MIRT650463 SLC35B1 solute carrier family 35 member B1 2 2
MIRT651094 ZNF516 zinc finger protein 516 2 2
MIRT655268 PER2 period circadian clock 2 2 2
MIRT657450 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT692248 POLR3F RNA polymerase III subunit F 2 2
MIRT695239 PBK PDZ binding kinase 2 2
MIRT696024 NDUFS3 NADH:ubiquinone oxidoreductase core subunit S3 2 2
MIRT698486 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT700581 PRSS22 protease, serine 22 2 2
MIRT704540 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT704723 CEP135 centrosomal protein 135 2 2
MIRT705194 BTG1 BTG anti-proliferation factor 1 2 2
MIRT710286 CSNK1G3 casein kinase 1 gamma 3 2 2
MIRT719623 TUBGCP3 tubulin gamma complex associated protein 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4699 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4699-3p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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