pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF623   
Synonyms -
Description zinc finger protein 623
Transcript NM_001082480   
Other Transcripts NM_014789   
Expression
Putative miRNA Targets on ZNF623
3'UTR of ZNF623
(miRNA target sites are highlighted)
>ZNF623|NM_001082480|3'UTR
   1 AATAATTACTTTCCCGCCCAGTGAGTGATGTTTGGAAATGCGTGGAATTAGGATTCATGTGGTTTCTAAGATTTGGACAT
  81 GTCAGAATTTTGTGAGTCATGGATGGGGCTGCTTTTGCAGTGGGTGCCACCTGCCACTGTGCAGCCCTACTCGGCTCAGC
 161 CCTTCTCCTCAGCTGTGAGCACTGTCCTCAGGAGAGTCACAGGGCTTGACACCTGACTCTGAGCTGGAACAGTAGGGGCA
 241 GGGAGAAGACAGGTCTCAAGAAAAGGTTTTTAAGAAGTTTCATCCCCAGTTAAGCAGAGTCCATCCTTGACTTAAATCCC
 321 TTATTACAGCACAACTGTGTATCTAATCTTACGATTTAGGAGAATGTTACCTAGGACATTTTGATGTGTTAAGTTGAAGA
 401 AAGGTAACTCGTGTATGAACCCCGAGCCATTTCCCTGTTGTCCTGAGGAGGAACTCCAGGCCTCCCATCGTGTGCCCTAA
 481 GGCCTCCTGCGTCCTGGAGCCCTGCCTCCCACTGCCTGACTTCCTGCCACACGGTTAATGCTGCAGCAACACCGACTGCT
 561 TCATCTTCCCTGTGCTCCACGTGGCTTCCTACCTCTCTCGCCTTTGTTCTTGTTGAAGGGTCTCTTCTCAGCTAATTAAC
 641 TCTGAATCATGGTTCAAGACAAGCCTCAGGCATCATGTCAATGGGTGTTTCCCTCAAGCTTAGTTGGCAGCACTCTCCAC
 721 ACTTCTGTGGCTCAGTGATTACTGCTATTACTATATTTACTTGCATATGTCAGAATGATGTGATAGACTATCTCTGTCAC
 801 TATGCTGTTGGGTTCCTGAGGACAGTGATCATATCTGATTGATTTCCATGTGTCCACTGTCTAGCACAGGGCAATAAAAA
 881 ATACACCCCTAAATCTATGTGTAATTGGCATCTCTCTTGCTTTGTCCTTTCTATACTGCCATTCTAAAAATTTTCAGCTG
 961 TTGGCTGTTTTTTTTGTTGTTTGTTCATTTTGTATCAGTATAATCTACGATTCTGTTAGAAGTATCTTCTCAGCCCTGCT
1041 ACTGTCTGCTGCTCCTACTTAGAAGTTGCAGGCAATATCCTGTGCACATCCACGCCCTCCTGTGTGCCACCTTACAGCTC
1121 ATGCAGAACTGTCTACTTGATCTGGAGGGCATTGACACCTGGCTCAGCTGGAACAGTGGGGACAGGAGGAGGCAGGTCTC
1201 AAGAGAAGGTCTTTACTTACTTGTCTGTATCTTTCTGTCTCACTCGAAAGGCACAGTCTCAATGCGCTACGTAACTCTTC
1281 TGTTGTAGCAGTTCTGAGGTTGAACTGAGCTCTTGTCATTTTCCATGCTCTCTGGCTCATTGTGTCATTTCAAAATGTAT
1361 TGATATCTATAAGGAATAGTCCTCAATGTTGGGAAAACAGATGAGCAACCCACTACCCTGAAGTCATCCACCGTGTAGTG
1441 GGGAAGACGGAGATCACAGTAGGGTGAGTTAAGTATGTGCCCTCAGGTGTGAAGGAGCACAGGTGAGGGGGTGCCTGCTG
1521 TGGCACAGAGCTGGGAAGGCCTTACAGAAGAGGTGACATTTCAGCTGGGCCAGAGATCAGTAGAGAGCAGCTGAAGAAGA
1601 AAATAGGGTCCAGGAGAGGAATCTGCAGAAACATGGAGCCATGACAGATGGCTTTTTGGCTAGGACTGTTCGAAAGCAGG
1681 CGAGGTAAATGGACAGTGGACAGCCGCCTCGCCAAACTGTTAGTCTTTACCTCTGAATTTCATCTGGACATGAACCCCAA
1761 AGTCCAGTTTTGTAACGATATAATTTTTTTCTCATGAGGCCATATTTTGAGTTCTTAAATACTACCAACCCTGAACGTCT
1841 CAGGACAAATAATTCAAAAAAGAGATCTACATTTTCTGGAAAATCAGCATTACTAGAGATGTTTCAAATGTAGATTTTAC
1921 CAGACCATTTTAATCAACTTTATTGAGATTCAATTTTCATATAGTAAAACGCCTATTTAAGTGTACAAGGTTTTGAAAAA
2001 TCTATACACCTGTGTAACCACCACCACCTGTGTAACCACCACCGCCAGAACCAAAAACGTTTCTGTCACCCAAAGAAGTT
2081 CCCTTTTGCCTTTTCCTAGTTAAGCCCACTCCAGCCCCAGATAACCACTTTCTATCCTCATAGATTAGTGTTGCTTGGTT
2161 TAGAGCCTCATACAAATGGATTCATTTACTATGTGTTCTTTTGCGTCTGATGTCTCACTTTGGCATGTTTTTAGACTCAT
2241 CCAAGCT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaacccAAAAUUCUCAAGAAau 5'
                ||||  ||||||||  
Target 5' gccataTTTT--GAGTTCTTaa 3'
1799 - 1818 140.00 -8.00
2
miRNA  3' uaacCCAAAAUUC---UCAAGAAAu 5'
              ||| | |||   || ||||| 
Target 5' ggcaGGTCTCAAGAGAAGGTCTTTa 3'
1191 - 1215 130.00 -10.50
3
miRNA  3' uaaccCAAAAUUCUCAAGAaau 5'
               ||| ||: ||||||   
Target 5' cttctGTTGTAGCAGTTCTgag 3'
1277 - 1298 125.00 -6.32
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1084570 10 COSMIC
COSN27006354 16 COSMIC
COSN30192779 17 COSMIC
COSN30523343 24 COSMIC
COSN31578549 42 COSMIC
COSN31491527 45 COSMIC
COSN30104303 53 COSMIC
COSN31524859 90 COSMIC
COSN31499576 102 COSMIC
COSN31499551 103 COSMIC
COSN31545941 127 COSMIC
COSN29136922 130 COSMIC
COSN28737471 153 COSMIC
COSN15627139 162 COSMIC
COSN30129201 175 COSMIC
COSN31567032 239 COSMIC
COSN30161805 363 COSMIC
COSN15627140 434 COSMIC
COSN30128858 440 COSMIC
COSN30542905 554 COSMIC
COSN30139354 628 COSMIC
COSN31485027 685 COSMIC
COSN8074085 692 COSMIC
COSN16599043 707 COSMIC
COSN30123406 714 COSMIC
COSN28660562 731 COSMIC
COSN31540684 769 COSMIC
COSN15627141 847 COSMIC
COSN30135081 872 COSMIC
COSN31490624 913 COSMIC
COSN30128978 915 COSMIC
COSN23013017 976 COSMIC
COSN30113367 982 COSMIC
COSN31480604 987 COSMIC
COSN31490631 987 COSMIC
COSN30111127 1024 COSMIC
COSN9258093 1050 COSMIC
COSN30539841 1056 COSMIC
COSN7668273 1094 COSMIC
COSN30531485 1132 COSMIC
COSN31571202 1225 COSMIC
COSN31565717 1261 COSMIC
COSN9258094 1312 COSMIC
COSN31490191 1318 COSMIC
COSN31485114 1385 COSMIC
COSN9258095 1389 COSMIC
COSN30127582 1450 COSMIC
COSN31544024 1498 COSMIC
COSN31520739 1529 COSMIC
COSN30143592 1558 COSMIC
COSN31582770 1635 COSMIC
COSN30144150 1706 COSMIC
COSN30111684 1792 COSMIC
COSN15627142 1794 COSMIC
COSN24302634 1796 COSMIC
COSN31545359 1837 COSMIC
COSN31481141 1842 COSMIC
COSN31482649 1879 COSMIC
COSN30161792 1914 COSMIC
COSN30530270 1934 COSMIC
COSN31549148 1948 COSMIC
COSN31528230 1978 COSMIC
COSN31963017 2005 COSMIC
COSN30129217 2076 COSMIC
COSN30125597 2166 COSMIC
COSN20673805 2170 COSMIC
COSN17037774 2198 COSMIC
COSN28741899 2210 COSMIC
COSN31572116 2238 COSMIC
COSN16415095 2240 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759802722 10 dbSNP
rs1193635844 13 dbSNP
rs1437730832 13 dbSNP
rs770191591 14 dbSNP
rs763156712 16 dbSNP
rs143354851 17 dbSNP
rs760722447 23 dbSNP
rs766082059 24 dbSNP
rs753704147 28 dbSNP
rs541069441 30 dbSNP
rs1375393851 31 dbSNP
rs764887472 34 dbSNP
rs752159349 36 dbSNP
rs757921332 39 dbSNP
rs1256897485 40 dbSNP
rs777403433 40 dbSNP
rs1253817754 41 dbSNP
rs747469739 42 dbSNP
rs183743323 43 dbSNP
rs1341997846 47 dbSNP
rs187648581 58 dbSNP
rs946078996 60 dbSNP
rs898614769 69 dbSNP
rs1387892198 70 dbSNP
rs1418091009 79 dbSNP
rs151208078 80 dbSNP
rs995597316 81 dbSNP
rs563922946 86 dbSNP
rs1026095636 88 dbSNP
rs140388396 98 dbSNP
rs780822261 101 dbSNP
rs546357010 106 dbSNP
rs1168639514 107 dbSNP
rs1282250142 108 dbSNP
rs564204724 109 dbSNP
rs1034950455 110 dbSNP
rs1467314889 111 dbSNP
rs370741676 130 dbSNP
rs1424599859 135 dbSNP
rs960581928 140 dbSNP
rs1039940224 147 dbSNP
rs1477559912 150 dbSNP
rs747893336 151 dbSNP
rs12679735 153 dbSNP
rs1200856555 154 dbSNP
rs61488208 156 dbSNP
rs1023466710 158 dbSNP
rs1236965825 167 dbSNP
rs1196205161 168 dbSNP
rs997855685 174 dbSNP
rs1273241902 175 dbSNP
rs1218320653 181 dbSNP
rs1343263472 185 dbSNP
rs1276994711 187 dbSNP
rs1025699717 188 dbSNP
rs1439043978 189 dbSNP
rs1376811457 191 dbSNP
rs1184523157 194 dbSNP
rs1364897178 198 dbSNP
rs1401180401 202 dbSNP
rs968238292 203 dbSNP
rs1422731666 211 dbSNP
rs1174114158 217 dbSNP
rs979193038 217 dbSNP
rs1439668913 219 dbSNP
rs777343425 221 dbSNP
rs1176754234 222 dbSNP
rs749721232 226 dbSNP
rs1005234055 227 dbSNP
rs1208928033 237 dbSNP
rs935017023 238 dbSNP
rs1281085027 239 dbSNP
rs1235471731 240 dbSNP
rs1016649824 243 dbSNP
rs969178046 253 dbSNP
rs986401939 254 dbSNP
rs981036114 256 dbSNP
rs1283692968 258 dbSNP
rs1374092578 258 dbSNP
rs1446009841 261 dbSNP
rs759502116 261 dbSNP
rs1335174095 264 dbSNP
rs1435083854 273 dbSNP
rs561626173 274 dbSNP
rs529202395 290 dbSNP
rs1359709394 294 dbSNP
rs1156724667 296 dbSNP
rs1441489590 297 dbSNP
rs1312505762 313 dbSNP
rs550571649 333 dbSNP
rs912817317 338 dbSNP
rs1471560192 346 dbSNP
rs960940796 352 dbSNP
rs942952307 353 dbSNP
rs150378770 354 dbSNP
rs1329411320 376 dbSNP
rs1040309210 377 dbSNP
rs1335063563 379 dbSNP
rs144867884 381 dbSNP
rs988083744 387 dbSNP
rs1348404982 397 dbSNP
rs1233020558 399 dbSNP
rs931410772 401 dbSNP
rs913201601 403 dbSNP
rs568610487 411 dbSNP
rs1294103741 412 dbSNP
rs1399663791 416 dbSNP
rs1339543154 421 dbSNP
rs193297197 424 dbSNP
rs926051959 425 dbSNP
rs942845540 426 dbSNP
rs1403070184 427 dbSNP
rs1195844183 435 dbSNP
rs1415378301 438 dbSNP
rs1188168186 444 dbSNP
rs1249269147 458 dbSNP
rs1457703328 466 dbSNP
rs775045655 467 dbSNP
rs1057118947 470 dbSNP
rs896445766 471 dbSNP
rs1220058246 473 dbSNP
rs1012159693 480 dbSNP
rs1177391885 484 dbSNP
rs1218183516 486 dbSNP
rs1316298783 488 dbSNP
rs1040312253 491 dbSNP
rs1023919391 492 dbSNP
rs570661596 495 dbSNP
rs1001084788 498 dbSNP
rs1434248507 500 dbSNP
rs1376166225 501 dbSNP
rs934199793 502 dbSNP
rs1165018147 505 dbSNP
rs1464713731 506 dbSNP
rs772045826 507 dbSNP
rs185122420 509 dbSNP
rs1172437446 510 dbSNP
rs1047327118 517 dbSNP
rs1030763805 518 dbSNP
rs1463758300 519 dbSNP
rs1489761233 521 dbSNP
rs552959942 533 dbSNP
rs200922524 534 dbSNP
rs1260209358 537 dbSNP
rs536169186 539 dbSNP
rs1463994935 553 dbSNP
rs73369357 554 dbSNP
rs964290662 556 dbSNP
rs575880077 557 dbSNP
rs1439919075 561 dbSNP
rs920147608 569 dbSNP
rs1373095123 571 dbSNP
rs1326568508 574 dbSNP
rs1445379936 575 dbSNP
rs1397552999 576 dbSNP
rs1035231882 580 dbSNP
rs546466240 581 dbSNP
rs1377368512 582 dbSNP
rs1047637689 583 dbSNP
rs1455903959 592 dbSNP
rs1396197703 593 dbSNP
rs908632573 596 dbSNP
rs200845831 598 dbSNP
rs564622348 600 dbSNP
rs938747979 601 dbSNP
rs1057189918 602 dbSNP
rs978799116 615 dbSNP
rs1349853071 630 dbSNP
rs772457993 638 dbSNP
rs1275624045 640 dbSNP
rs1239376114 646 dbSNP
rs926020947 648 dbSNP
rs942747291 650 dbSNP
rs1391540410 651 dbSNP
rs975528849 668 dbSNP
rs922736644 669 dbSNP
rs894468692 675 dbSNP
rs1436945094 676 dbSNP
rs141981344 677 dbSNP
rs1158526029 678 dbSNP
rs1438405596 680 dbSNP
rs1439306447 681 dbSNP
rs760961814 682 dbSNP
rs887381991 686 dbSNP
rs903741419 693 dbSNP
rs1000714527 704 dbSNP
rs764011278 711 dbSNP
rs1030789000 713 dbSNP
rs1194246543 721 dbSNP
rs61473404 731 dbSNP
rs1486507431 736 dbSNP
rs561686899 739 dbSNP
rs904875821 739 dbSNP
rs528906965 743 dbSNP
rs761850441 748 dbSNP
rs1056230654 752 dbSNP
rs1339415481 754 dbSNP
rs896296879 756 dbSNP
rs1166944829 758 dbSNP
rs1356445091 765 dbSNP
rs1297985989 766 dbSNP
rs766275788 773 dbSNP
rs1159705979 776 dbSNP
rs1457447765 781 dbSNP
rs1366829238 789 dbSNP
rs1457393288 789 dbSNP
rs570859347 791 dbSNP
rs1475667035 793 dbSNP
rs967992328 801 dbSNP
rs1192658936 810 dbSNP
rs754758840 821 dbSNP
rs562678913 825 dbSNP
rs1205686976 831 dbSNP
rs533255860 832 dbSNP
rs551166152 842 dbSNP
rs1337708126 850 dbSNP
rs1263189150 858 dbSNP
rs983012098 860 dbSNP
rs566292834 863 dbSNP
rs145833382 867 dbSNP
rs1293419250 876 dbSNP
rs1277246185 878 dbSNP
rs938779074 885 dbSNP
rs955708321 888 dbSNP
rs138712751 889 dbSNP
rs915975871 895 dbSNP
rs1386729545 898 dbSNP
rs1388599037 900 dbSNP
rs1264043070 911 dbSNP
rs1487056198 916 dbSNP
rs1423165078 921 dbSNP
rs948763391 922 dbSNP
rs190073679 927 dbSNP
rs1474285861 931 dbSNP
rs1205877622 934 dbSNP
rs1193744467 939 dbSNP
rs777097040 940 dbSNP
rs1476856828 943 dbSNP
rs1250522027 953 dbSNP
rs1468575654 954 dbSNP
rs1256998361 955 dbSNP
rs748807740 958 dbSNP
rs1212479157 961 dbSNP
rs1341850374 968 dbSNP
rs139206799 968 dbSNP
rs1328585099 974 dbSNP
rs1441701013 976 dbSNP
rs199676905 977 dbSNP
rs1399696269 978 dbSNP
rs1418744321 980 dbSNP
rs1329513945 983 dbSNP
rs200620650 984 dbSNP
rs181813544 987 dbSNP
rs184039859 995 dbSNP
rs1365270046 997 dbSNP
rs188820479 1009 dbSNP
rs370123860 1014 dbSNP
rs937721979 1015 dbSNP
rs1297159881 1016 dbSNP
rs1358200546 1018 dbSNP
rs779558508 1019 dbSNP
rs1416297226 1020 dbSNP
rs1201935331 1023 dbSNP
rs879469416 1025 dbSNP
rs1273356416 1031 dbSNP
rs1377896585 1033 dbSNP
rs1200230785 1039 dbSNP
rs1346226218 1047 dbSNP
rs746430259 1050 dbSNP
rs1306227006 1055 dbSNP
rs892281210 1058 dbSNP
rs142765331 1075 dbSNP
rs1311223338 1079 dbSNP
rs1307190496 1089 dbSNP
rs1444546069 1093 dbSNP
rs1009808241 1095 dbSNP
rs1333817665 1096 dbSNP
rs1413673027 1109 dbSNP
rs558398946 1125 dbSNP
rs1240244950 1128 dbSNP
rs1379084484 1131 dbSNP
rs1019334079 1134 dbSNP
rs1174970606 1135 dbSNP
rs180785423 1143 dbSNP
rs1000762592 1147 dbSNP
rs1484872129 1152 dbSNP
rs1487425418 1153 dbSNP
rs1017543808 1159 dbSNP
rs540805869 1160 dbSNP
rs1225525166 1162 dbSNP
rs1374200410 1166 dbSNP
rs1027066264 1184 dbSNP
rs953027636 1187 dbSNP
rs983021160 1193 dbSNP
rs555202874 1194 dbSNP
rs1435181274 1197 dbSNP
rs1359812531 1207 dbSNP
rs1156899462 1211 dbSNP
rs960214616 1212 dbSNP
rs1408111104 1213 dbSNP
rs573669817 1213 dbSNP
rs916005556 1217 dbSNP
rs1162224262 1218 dbSNP
rs760766472 1220 dbSNP
rs1474026415 1221 dbSNP
rs948774720 1224 dbSNP
rs978818599 1230 dbSNP
rs1488200651 1235 dbSNP
rs543916550 1236 dbSNP
rs925932432 1244 dbSNP
rs767163343 1246 dbSNP
rs1419641039 1247 dbSNP
rs1231616855 1248 dbSNP
rs936624321 1255 dbSNP
rs1052319603 1260 dbSNP
rs892353484 1263 dbSNP
rs1294200780 1264 dbSNP
rs943880090 1266 dbSNP
rs1361061322 1267 dbSNP
rs962868366 1270 dbSNP
rs1040815008 1271 dbSNP
rs899617722 1272 dbSNP
rs1173879126 1275 dbSNP
rs1322310787 1275 dbSNP
rs937673273 1276 dbSNP
rs1056167862 1277 dbSNP
rs1165255837 1282 dbSNP
rs1301560273 1283 dbSNP
rs1376121423 1286 dbSNP
rs1417843003 1287 dbSNP
rs996995859 1291 dbSNP
rs917583715 1293 dbSNP
rs1308989014 1307 dbSNP
rs143760755 1311 dbSNP
rs945070580 1313 dbSNP
rs1042181490 1315 dbSNP
rs1351972650 1319 dbSNP
rs1026682500 1323 dbSNP
rs1306651973 1325 dbSNP
rs185498448 1328 dbSNP
rs1293187731 1330 dbSNP
rs1216184602 1333 dbSNP
rs1362566772 1341 dbSNP
rs1236703136 1349 dbSNP
rs1325205476 1352 dbSNP
rs1438048356 1354 dbSNP
rs1396081561 1360 dbSNP
rs537921376 1364 dbSNP
rs1326109589 1368 dbSNP
rs148143380 1370 dbSNP
rs1172988311 1375 dbSNP
rs1247019490 1380 dbSNP
rs1003859568 1382 dbSNP
rs1015867863 1387 dbSNP
rs900454112 1402 dbSNP
rs141975568 1406 dbSNP
rs992999307 1412 dbSNP
rs191004578 1414 dbSNP
rs182230893 1416 dbSNP
rs568503595 1423 dbSNP
rs187186845 1430 dbSNP
rs979236719 1434 dbSNP
rs761880234 1438 dbSNP
rs934673801 1444 dbSNP
rs574561337 1449 dbSNP
rs751440911 1450 dbSNP
rs1193823053 1466 dbSNP
rs1372469988 1470 dbSNP
rs1424064962 1476 dbSNP
rs943953601 1477 dbSNP
rs1370713506 1480 dbSNP
rs1869435 1481 dbSNP
rs1354682943 1487 dbSNP
rs974252230 1490 dbSNP
rs921086181 1495 dbSNP
rs1375256243 1496 dbSNP
rs1172260304 1504 dbSNP
rs1331277337 1512 dbSNP
rs1375086611 1524 dbSNP
rs1443610396 1526 dbSNP
rs1181164779 1539 dbSNP
rs1034340323 1541 dbSNP
rs1252900293 1542 dbSNP
rs1178036216 1550 dbSNP
rs1480812607 1550 dbSNP
rs932443324 1554 dbSNP
rs959616844 1555 dbSNP
rs992824685 1557 dbSNP
rs917569860 1565 dbSNP
rs150698958 1588 dbSNP
rs1217749931 1590 dbSNP
rs191718158 1603 dbSNP
rs767178930 1609 dbSNP
rs1308647042 1612 dbSNP
rs140007853 1615 dbSNP
rs1391633629 1621 dbSNP
rs1355153422 1623 dbSNP
rs1311444021 1624 dbSNP
rs1417078025 1632 dbSNP
rs1318700292 1634 dbSNP
rs977821263 1635 dbSNP
rs534433436 1636 dbSNP
rs1451681954 1639 dbSNP
rs925044547 1643 dbSNP
rs752561462 1648 dbSNP
rs114089398 1672 dbSNP
rs1185514636 1673 dbSNP
rs1221985002 1678 dbSNP
rs116940361 1679 dbSNP
rs573660583 1680 dbSNP
rs1023157247 1681 dbSNP
rs544257243 1682 dbSNP
rs555904757 1683 dbSNP
rs554103327 1686 dbSNP
rs1291115778 1687 dbSNP
rs1477225045 1690 dbSNP
rs1235500511 1691 dbSNP
rs1170546918 1694 dbSNP
rs921669 1695 dbSNP
rs956083346 1696 dbSNP
rs1381045115 1697 dbSNP
rs1387147053 1699 dbSNP
rs1289520815 1704 dbSNP
rs371644961 1706 dbSNP
rs995559029 1707 dbSNP
rs911882694 1708 dbSNP
rs746307260 1711 dbSNP
rs560050437 1712 dbSNP
rs1368858182 1722 dbSNP
rs977058519 1723 dbSNP
rs1341156297 1737 dbSNP
rs1218125032 1745 dbSNP
rs113204519 1751 dbSNP
rs1025679917 1753 dbSNP
rs1336821653 1773 dbSNP
rs1270849730 1775 dbSNP
rs73369359 1777 dbSNP
rs1288870597 1778 dbSNP
rs1449671489 1781 dbSNP
rs1217437249 1782 dbSNP
rs1048193352 1783 dbSNP
rs1263500364 1784 dbSNP
rs1440228967 1785 dbSNP
rs909636557 1801 dbSNP
rs1487781577 1802 dbSNP
rs561095547 1803 dbSNP
rs146311362 1807 dbSNP
rs1391093104 1812 dbSNP
rs747371028 1830 dbSNP
rs974899808 1832 dbSNP
rs183494511 1837 dbSNP
rs1476471649 1841 dbSNP
rs1164346097 1842 dbSNP
rs768970112 1843 dbSNP
rs543635772 1845 dbSNP
rs1320489022 1856 dbSNP
rs1215112057 1868 dbSNP
rs533396289 1882 dbSNP
rs776899863 1885 dbSNP
rs1271924260 1893 dbSNP
rs906080282 1900 dbSNP
rs1000772782 1905 dbSNP
rs1361374215 1920 dbSNP
rs551787866 1922 dbSNP
rs1368807533 1926 dbSNP
rs757495117 1927 dbSNP
rs1296404766 1936 dbSNP
rs1357521193 1939 dbSNP
rs1245358269 1944 dbSNP
rs567216592 1949 dbSNP
rs1283551755 1952 dbSNP
rs907836603 1954 dbSNP
rs748383073 1959 dbSNP
rs940017132 1962 dbSNP
rs1398405040 1971 dbSNP
rs13259906 1972 dbSNP
rs773315562 1974 dbSNP
rs1411006094 1976 dbSNP
rs1194946047 1983 dbSNP
rs1478097643 1986 dbSNP
rs1018927769 1991 dbSNP
rs139617326 1994 dbSNP
rs966036870 1995 dbSNP
rs1179266594 2000 dbSNP
rs186948274 2003 dbSNP
rs974744767 2005 dbSNP
rs557845756 2007 dbSNP
rs958500931 2007 dbSNP
rs921189118 2008 dbSNP
rs1283153570 2010 dbSNP
rs1219860769 2017 dbSNP
rs1350092807 2020 dbSNP
rs1442507725 2025 dbSNP
rs750511925 2033 dbSNP
rs1444666330 2039 dbSNP
rs1237443777 2040 dbSNP
rs200548972 2044 dbSNP
rs537569286 2045 dbSNP
rs909710073 2046 dbSNP
rs1160798553 2049 dbSNP
rs1373535585 2051 dbSNP
rs1175483204 2059 dbSNP
rs939775316 2060 dbSNP
rs1381377332 2065 dbSNP
rs1156391750 2067 dbSNP
rs1407525744 2073 dbSNP
rs1419321645 2074 dbSNP
rs966983981 2078 dbSNP
rs1187658497 2083 dbSNP
rs999785553 2084 dbSNP
rs1260187000 2099 dbSNP
rs1446452438 2100 dbSNP
rs1282260739 2104 dbSNP
rs1377307612 2109 dbSNP
rs1330071345 2112 dbSNP
rs972495304 2122 dbSNP
rs1292960224 2130 dbSNP
rs1031971204 2133 dbSNP
rs1304470189 2135 dbSNP
rs1353364698 2135 dbSNP
rs957709811 2138 dbSNP
rs1344029485 2143 dbSNP
rs1396713072 2144 dbSNP
rs1315611301 2145 dbSNP
rs916972693 2149 dbSNP
rs556255449 2162 dbSNP
rs1163808284 2173 dbSNP
rs1044025431 2178 dbSNP
rs954567034 2185 dbSNP
rs1420501351 2190 dbSNP
rs1182890526 2199 dbSNP
rs987745540 2200 dbSNP
rs577303790 2205 dbSNP
rs116869310 2206 dbSNP
rs1465433120 2213 dbSNP
rs1055060823 2215 dbSNP
rs1237432529 2219 dbSNP
rs369673525 2224 dbSNP
rs891948743 2233 dbSNP
rs919899727 2237 dbSNP
rs1199357986 2245 dbSNP
rs1361165392 2247 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uaacccaaaauucUCAAGAAAu 5'
                       |||||||| 
Target 5' ----------ucaAGUUCUUUc 3'
1 - 12
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000501748.2 | 3UTR | UCAAGUUCUUUCCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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