miRTarBase - #MIRT449312


—
pre-miRNA Information
pre-miRNA hsa-mir-4271   
Genomic Coordinates chr3: 49274120 - 49274186
Description Homo sapiens miR-4271 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4271
Sequence 39| GGGGGAAGAAAAGGUGGGG |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30481495 1 COSMIC
COSN31532060 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760829741 1 dbSNP
rs1277951968 2 dbSNP
rs189148716 3 dbSNP
rs757021935 4 dbSNP
rs1285201145 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MRO   
Synonyms B29, C18orf3
Description maestro
Transcript NM_001127174   
Other Transcripts NM_001127175 , NM_001127176 , NM_031939   
Expression
Putative miRNA Targets on MRO
3'UTR of MRO
(miRNA target sites are highlighted)		 
>MRO|NM_001127174|3'UTR
   1 GCGCAGAGCAGCAGGGAAATGGTTCTGTATGAGTGCATTGCTGAGCCATCATGTTCCCCTGTTTTATCTCACTGGATGCC
  81 TCTTCTCACTGCTTGCCTCTTGGGATTGTAATGGGAAAGAGGGTGCTGGGAGAGCAATCAAAGGCAAAAATAATACATGG
 161 AATTGTATGATTTTATCTAAAGTAAAATTCTAGACTGCTTTCACTTATTTCATTTCCTCCCCATACAAATTTGATGAGCA
 241 GGTACACACTTTCTTTAAAACATTCCAAGTGTATATAGATTCAGTGCTTATTTCTCAGCTTTTTCTTTCTTAAGTTCATC
 321 TCTGTCACCTAGCTTTTATTTTTAATACTCAATTTCTGAGGCTTAGGAGAATACTTGTTACCTTAAGCGTTTTTTTGTTT
 401 TTTTGTTGTTGTTGTTTTGTTTTTTTTTAGTGTATTTGCTATTGATACTTTGCTATTGATACCTTTACTTGCCAAGATTT
 481 ATTTAAAGTTGGCCAAGATACCAAGAAGGTGGCTTGCAGGGGCATCTTTGGCTTCTCATAATTTTAAACAGTCATTGCTT
 561 TCAAGATCATGCTAAACAAGAATTAATAGAGAGAAAAAAATCTATAAAGCATGTGTTGAAAATCCTCAGGCTCATGATAA
 641 CTTACGGGATAACAATAGTAGGTAACACCGAGTGCTTACAATTCAGTGGGCACGGTCAAAGTGCTTTTTGTAAGTTCTAT
 721 TTAATACTTGCGACAACCCTGAGATAGTAAGTATTATTATTGTTCTCATTTTATAGATGAGAAAGCTAACACATAGGGAA
 801 ATTAGGTAACTTTCCCCAGATAACTCAGTAAACAGTGGAGCTGGAATTCAAACATGTACGGTCTGACTTCTTGAGCCCAT
 881 ACTCAATAATCATGCCATCCTGCCTTTCCATGGAATAACTGATGGATGGTTAGAAATGTTAAAAACAAAGCAAATGCAAA
 961 CATCTCTGCTTCTGCTCCTCTACTAAGCCCAGTTAACTTTTGATTTTATATGTACTAAGTATACATTTTTATTAATTTAT
1041 GTGAGCTGAGTGTTTTTATTAATTACTTTTTGGCTATTAATGTCAATTATTTTGGTGATCAATCCTAGTTATCCAAGGAG
1121 TCACATCACTCGTAAAAATTACAAGAAAAATCTCTAAGTCCCTCTCACCCTCCCTCTAACCAGATTGCATCCCAAGCTTC
1201 TATAGAAACTCTGGTACCACCCCTGAATTCAGTATCCAGGCCACACCCGGAGCGTTTTGTTCAAGACAATTTAAAACACG
1281 GGGGATTATAAAAGCTATAGCTGGATCTTAAGTGGCATTCTGAGAATGAGGAACTCAATTTTCTGCTGTAGCTCCCAGGG
1361 ACAGGGTGGTGTGACACAGATGCGGGGATGAGGAGAGACCTAGGCGAGATGAGGATGTGGGAGATGGCAGACAGAGTGGC
1441 AAGTGCCAGGCAGGAATGGATTTTCTTCCTTCCTGTTCTGAATCTGAAGAACATGACAGCAAGAGATTTTAGGAGGGACA
1521 CAGGCTCACGAGCAAATGGGTGGTTCTGAGCTGTAAGCCCCCTGCCCCTCCCTAGCACCCACTCCCCGGATGCTGGCCTC
1601 TTTGAAATTTTGTTGCAAGGTTGGTTTAAACTTGATGCAGTTCCATTAAGTGATCAGTGAGTGGTCTGAGAAATGGCTGC
1681 ATGTGGCTGGCATTCAAAAAGGTGGGGATAGGGTGAGATGGGTGGGGTTACGTGCTCTGGAGTAGAAAAACCTATGCAGT
1761 TAATGTCCCTCTGTCGGTTAAAATTGTGGAAGATGCGGTTGGATTATTTGACTTTAAGATTCAATGGTAGGCTTTTATTT
1841 TGGTGGCCCCCAATGAGTCATGCCTCCTGATACTCATGTCTTTATTTAGTCCCTTCTGTTTGAATCTGGGCTGCCTTTGT
1921 GACTTGCTTTAATCAGGAGATTGTGATAAATGGCACTGTGCCGGGCATAGAAACCCTGGCAGTTTCCTCGTTTGAATTGT
2001 GGGGGAAGCCAGCTGCCACATAAGGAGTTGAACTACCAGGAACAAATGAGAGTGCCTGAGATCACCATGTGAAGGAGAAC
2081 GGAGACACCCAACCCACAGCAGAGTCTGAGGCCCGGACACATGACACAAGTTGTCCCTTCCAGCCAGACCCGAGCTGTTG
2161 AAGCTACTCCAGCTGACACCATACGGAAAAGAGACGAGCGTCTCCATCAAGCCTGTGTCAGTTGCAGAAGCATGAACAAA
2241 GAATCAAATGATTGTTGTTTTAAGTCATTAACCTTTGGGATAATTTGTCACACTGCAATAAGTAACCAGAGAAGATTCCT
2321 TATTATTAACTGTTGTCTTGGCTAATTTTGTTTTGCTCTTCATAAGTCCTCTTTGAGTTTAAATTCTATTTCCAGAAATT
2401 TATGTTATCATGAAATTTGGTGGCAAGAGCAAGGGACTATGTTTTTTTGTTTGTTTGTTTCTGTTTCTCACCATACCTAC
2481 CACAGAGCCTGGCCATGTGATTAAGGAACATTTGCTGAATGACTAAATGATTCCAAATTGTAGAGGGAATAAAGTCCAAT
2561 GTCCAGTCTGCCATTTCAGGCTTTCAACCTTCGTTTTCTTCTGTTACTCTCTTTGCTTCAGACAAGTTTGGGTCCTTTCT
2641 CTTCTCTCAACATGTCTTGTTCTCCTATACCCCCTCACCTTTGCTCAGTCTGCTATTTCTGTGTTGAGTCCCCTCCCTGC
2721 TCACCTGTACACACCCACCTGGAATCACATGCACACACACACACACACATTTCACGTGTATCTCTTATCTGTACTCCAAT
2801 GCCTAGGTCAAAGTCCTGATCCCCCCAATCAGGGGAGAGCTCAAGTCTCTGAATTCCCAGAACATTCTAGCAATATTATA
2881 CCACTTATATCTTATCTGAAAAGTTTTTTTTTGTATATGGCTTTATGTTTTTTTTTTTATCCTGTTAGATTGAAACTACA
2961 GAAGGCAGGGCTGTATCTTGTACATCATTGTATCTCCCCGGTGACTGCAAAAGTACTCTGTAAATGAATGTTGATTAGGG
3041 GGAAAAATGTCAGAAAGTCATCTGAAGCTGTCATTCCTTACTGGGAGGAGCCCATTTTGACAAATGAGGGTCACCAATTT
3121 CATTCCTTATAACCAATGTACAGGTTACTTTTATGCTTGTGCATTTCAAGTTTCCCCTTCCCCACGTTTATCTGAATGCC
3201 AACCCAAAGGTAATGTTTTGACATTTCTTAATTTTGAACATTAATTTTGAACCTTATTGAGCAGTTGAATGAAAGAAAGA
3281 AAAAAGGAATGTTCAAGTGCCCCGACCCTCATGCTAAGTGCCCAGGGTAGAGCTTTGCTTGGTCCCTGTGTCTCTGGTGC
3361 TCATGAGATAGGTCTTTCTTTCTTTATTTTTATTTTTGAGATGGAGCCTCACTCTGTCACCCAGGCTGGAGTGCAATGAC
3441 ACGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTAC
3521 AGGTGCCTGCCACCATGGCTGGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCA
3601 AACTCCTGACCTCAAGTGATCTGCTCACCTTGGTCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCTCCTGGCTG
3681 AGATAGGTCTTTCTTAAAGGGGAGAGGGAAGTGGTGGAGAGAGAGGAGAGAAAATGACAAAGGAGGAGGCTGAGAATCTA
3761 ACAGGTGTGACCAATTCTGCTACTGAATGAGAGCAGAAGCCTGTGAACTTCCAGTTAATAGACCACTTAATTGGGGGAAC
3841 GCTTCACACGTTATAAAAAAGCACTAGAATGTTTTGAAAGCGAGAAACAACAGCTGTGTAGGGTAGCTAGCAGTTAGTGT
3921 TGTACAGAAGACAGATATTTGTGCATTTCTGCATTTTCTAAGTTTGCTGCAATGAGCATGTATTACTTTCATAGTTATAA
4001 AACACATGCAAAATGCCCTTTTAAAATGAAAAAAAAGTCCATGAGTGTAAGTGATATATATGCTTTGGAAAGCCTGGGAC
4081 GGTCATTGTTTACTCTCAATAGTATGTGTTTGCCTTTGTCTTTTTGAGACATTTTGTTTTAATCTGTTGATGACAATAAC
4161 CTGTTGATAATATAACTTGATAACAAATAAAATGACTTATGATTGATTATCATTTTAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggGGUGGAAA--AGAAGGGGg 5'
            :||  |||   ||||||| 
Target 5' ttTCAAGTTTCCCCTTCCCCa 3'
 3164 - 3184 147.00 -15.20
2 
miRNA  3' gggguGGAAA-AGAAGGGGg 5'
               ||||| |||||:|: 
Target 5' tgggtCCTTTCTCTTCTCTc 3'
 2629 - 2648 130.00 -16.00
3 
miRNA  3' gggguggAAAAGAAGGGGg 5'
                 |||||||||:: 
Target 5' gaatggaTTTTCTTCCTTc 3'
 1454 - 1472 128.00 -13.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30189833 2 COSMIC
COSN31518341 11 COSMIC
COSN31559309 46 COSMIC
COSN30485206 97 COSMIC
COSN31566492 104 COSMIC
COSN30515550 110 COSMIC
COSN30518246 113 COSMIC
COSN30462940 114 COSMIC
COSN30463083 115 COSMIC
COSN30474127 130 COSMIC
COSN30453335 139 COSMIC
COSN31609381 148 COSMIC
COSN1745781 196 COSMIC
COSN28131000 397 COSMIC
COSN18916868 405 COSMIC
COSN25660459 580 COSMIC
COSN20923397 863 COSMIC
COSN22412483 948 COSMIC
COSN7361705 1060 COSMIC
COSN25696719 1352 COSMIC
COSN16272902 1405 COSMIC
COSN25876346 1684 COSMIC
COSN22777439 1747 COSMIC
COSN5865543 1812 COSMIC
COSN9336670 1812 COSMIC
COSN20632359 1838 COSMIC
COSN31961434 2619 COSMIC
COSN27372743 2752 COSMIC
COSN20114995 2927 COSMIC
COSN27597002 3007 COSMIC
COSN22736865 3043 COSMIC
COSN18012904 3440 COSMIC
COSN19128918 3548 COSMIC
COSN27866624 3578 COSMIC
COSN27866875 3583 COSMIC
COSN1745780 3705 COSMIC
COSN19480637 3849 COSMIC
COSN21155446 4109 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1267210039 2 dbSNP
rs376886780 3 dbSNP
rs1343719147 8 dbSNP
rs769583069 9 dbSNP
rs371970330 12 dbSNP
rs745841562 13 dbSNP
rs776600396 21 dbSNP
rs138797059 23 dbSNP
rs1431389897 26 dbSNP
rs1421546778 27 dbSNP
rs1365195893 28 dbSNP
rs922486176 36 dbSNP
rs375039894 37 dbSNP
rs777359606 40 dbSNP
rs1212600683 43 dbSNP
rs758126203 48 dbSNP
rs1280111197 51 dbSNP
rs1294076111 60 dbSNP
rs1411089239 70 dbSNP
rs562148547 72 dbSNP
rs1385172604 75 dbSNP
rs926687338 80 dbSNP
rs964655873 84 dbSNP
rs982599382 88 dbSNP
rs1266684018 89 dbSNP
rs1466271245 91 dbSNP
rs1337428627 119 dbSNP
rs1379137040 129 dbSNP
rs868802034 134 dbSNP
rs1487756157 142 dbSNP
rs555897408 162 dbSNP
rs1252042521 165 dbSNP
rs913891142 167 dbSNP
rs1180974887 176 dbSNP
rs1412566060 185 dbSNP
rs1184288436 193 dbSNP
rs112454301 217 dbSNP
rs1032252553 230 dbSNP
rs998992974 237 dbSNP
rs907377670 241 dbSNP
rs567218253 242 dbSNP
rs1456327503 244 dbSNP
rs1300012918 252 dbSNP
rs2276185 277 dbSNP
rs894128639 286 dbSNP
rs1257999598 292 dbSNP
rs1409236668 299 dbSNP
rs78230861 300 dbSNP
rs1357530390 322 dbSNP
rs1234296158 333 dbSNP
rs1323315360 337 dbSNP
rs1312437631 339 dbSNP
rs1289475073 340 dbSNP
rs1320509285 340 dbSNP
rs1207207824 341 dbSNP
rs1230828855 345 dbSNP
rs1333448349 348 dbSNP
rs941100726 352 dbSNP
rs908328196 380 dbSNP
rs1403812665 382 dbSNP
rs571124293 387 dbSNP
rs551478835 388 dbSNP
rs1047257520 389 dbSNP
rs1469054813 390 dbSNP
rs1377561008 397 dbSNP
rs28526679 397 dbSNP
rs71939061 397 dbSNP
rs1216641941 398 dbSNP
rs933793913 398 dbSNP
rs1299000648 399 dbSNP
rs897605022 399 dbSNP
rs1014521795 401 dbSNP
rs1005856381 403 dbSNP
rs1255151400 405 dbSNP
rs2849256 405 dbSNP
rs561240714 406 dbSNP
rs1483680939 408 dbSNP
rs28454613 408 dbSNP
rs34996472 408 dbSNP
rs778454177 408 dbSNP
rs779049650 408 dbSNP
rs1396932537 411 dbSNP
rs1415306318 413 dbSNP
rs1468597483 414 dbSNP
rs137892081 415 dbSNP
rs371985724 415 dbSNP
rs938314742 417 dbSNP
rs1321630160 419 dbSNP
rs1357577090 419 dbSNP
rs1362123315 419 dbSNP
rs563084917 420 dbSNP
rs549590710 424 dbSNP
rs529641494 428 dbSNP
rs1219269653 429 dbSNP
rs1294833629 429 dbSNP
rs1346538691 429 dbSNP
rs1239312720 430 dbSNP
rs1310012956 431 dbSNP
rs1245155897 432 dbSNP
rs975281639 433 dbSNP
rs1046585847 441 dbSNP
rs1269211090 451 dbSNP
rs560822538 458 dbSNP
rs914004980 462 dbSNP
rs9950944 467 dbSNP
rs113772776 471 dbSNP
rs371083955 471 dbSNP
rs777070005 471 dbSNP
rs1423397125 480 dbSNP
rs1402663543 485 dbSNP
rs1160426839 489 dbSNP
rs1388339311 498 dbSNP
rs925347171 502 dbSNP
rs986445912 504 dbSNP
rs1332118961 506 dbSNP
rs953350550 508 dbSNP
rs577986688 511 dbSNP
rs9961744 513 dbSNP
rs1365128043 514 dbSNP
rs1229815405 516 dbSNP
rs990203842 517 dbSNP
rs957602875 525 dbSNP
rs1031722039 535 dbSNP
rs975908501 537 dbSNP
rs189393282 538 dbSNP
rs971531972 543 dbSNP
rs961742050 551 dbSNP
rs1451512060 552 dbSNP
rs1198333998 556 dbSNP
rs2847538 571 dbSNP
rs1013162336 572 dbSNP
rs1005801667 586 dbSNP
rs185013730 587 dbSNP
rs1017009914 589 dbSNP
rs536018985 600 dbSNP
rs1005180692 602 dbSNP
rs1163805338 603 dbSNP
rs1333162166 612 dbSNP
rs1002854182 621 dbSNP
rs1458432037 628 dbSNP
rs886785230 635 dbSNP
rs1046783910 645 dbSNP
rs760229339 646 dbSNP
rs933763288 647 dbSNP
rs1444314438 649 dbSNP
rs900999090 669 dbSNP
rs1349423067 670 dbSNP
rs558951543 671 dbSNP
rs545713559 673 dbSNP
rs1039544185 680 dbSNP
rs141149036 686 dbSNP
rs915121243 692 dbSNP
rs757883185 693 dbSNP
rs752110756 694 dbSNP
rs764901984 695 dbSNP
rs977486142 699 dbSNP
rs931870493 700 dbSNP
rs975855963 702 dbSNP
rs1162001015 703 dbSNP
rs1211010352 710 dbSNP
rs971500971 710 dbSNP
rs1357811174 711 dbSNP
rs1431108902 715 dbSNP
rs192135258 717 dbSNP
rs190393515 723 dbSNP
rs571225724 726 dbSNP
rs984496226 731 dbSNP
rs1243748489 732 dbSNP
rs1282363768 735 dbSNP
rs551050903 752 dbSNP
rs951856164 754 dbSNP
rs991696654 760 dbSNP
rs958865402 764 dbSNP
rs1428339999 767 dbSNP
rs1325664608 768 dbSNP
rs1482217964 776 dbSNP
rs1017154115 779 dbSNP
rs1257061643 787 dbSNP
rs1001226337 793 dbSNP
rs970015585 798 dbSNP
rs1250460344 808 dbSNP
rs1025238550 809 dbSNP
rs1013884887 810 dbSNP
rs1388991516 811 dbSNP
rs866277334 815 dbSNP
rs1427210834 817 dbSNP
rs1174002791 819 dbSNP
rs11873058 820 dbSNP
rs35810501 820 dbSNP
rs1395258209 821 dbSNP
rs886756557 826 dbSNP
rs1052633801 830 dbSNP
rs1435681081 835 dbSNP
rs1001339895 839 dbSNP
rs866477813 843 dbSNP
rs1161818079 849 dbSNP
rs1025758582 853 dbSNP
rs753217269 859 dbSNP
rs1256814856 860 dbSNP
rs1344510786 864 dbSNP
rs1199167088 875 dbSNP
rs1250256248 877 dbSNP
rs1465785861 879 dbSNP
rs568971486 885 dbSNP
rs766082613 891 dbSNP
rs1246687660 899 dbSNP
rs1039428596 907 dbSNP
rs942502127 908 dbSNP
rs1200305461 913 dbSNP
rs1390971689 922 dbSNP
rs1169889645 924 dbSNP
rs1474617108 928 dbSNP
rs185214515 948 dbSNP
rs1465226626 950 dbSNP
rs1174039213 951 dbSNP
rs1372906606 958 dbSNP
rs1390532573 960 dbSNP
rs1457528447 962 dbSNP
rs893642568 966 dbSNP
rs1053685602 975 dbSNP
rs1491000220 981 dbSNP
rs1388606504 982 dbSNP
rs1050831158 983 dbSNP
rs56949687 984 dbSNP
rs924622929 998 dbSNP
rs560452425 1001 dbSNP
rs1231307875 1003 dbSNP
rs1270193627 1008 dbSNP
rs1041774479 1012 dbSNP
rs950112236 1021 dbSNP
rs1208424636 1024 dbSNP
rs923154281 1046 dbSNP
rs1040263685 1050 dbSNP
rs1211181286 1053 dbSNP
rs1267404686 1058 dbSNP
rs548662090 1066 dbSNP
rs907698542 1073 dbSNP
rs917300299 1081 dbSNP
rs984610690 1086 dbSNP
rs991581125 1091 dbSNP
rs1472799614 1094 dbSNP
rs958874152 1104 dbSNP
rs1212494587 1120 dbSNP
rs1343422813 1126 dbSNP
rs951862400 1127 dbSNP
rs910061525 1131 dbSNP
rs17805042 1132 dbSNP
rs980139662 1138 dbSNP
rs1351275607 1139 dbSNP
rs971089398 1141 dbSNP
rs1286839263 1162 dbSNP
rs1324075117 1168 dbSNP
rs192824699 1170 dbSNP
rs1343505573 1174 dbSNP
rs1025303424 1176 dbSNP
rs1302502160 1180 dbSNP
rs1219538186 1181 dbSNP
rs761804361 1185 dbSNP
rs1371294597 1189 dbSNP
rs965021036 1191 dbSNP
rs1017950155 1198 dbSNP
rs1331096323 1202 dbSNP
rs1013834072 1203 dbSNP
rs1396207466 1207 dbSNP
rs1367751999 1213 dbSNP
rs1006612729 1216 dbSNP
rs564542278 1219 dbSNP
rs1031152722 1222 dbSNP
rs17663205 1223 dbSNP
rs1427766700 1226 dbSNP
rs903904740 1232 dbSNP
rs1050537713 1233 dbSNP
rs575359976 1234 dbSNP
rs1229211581 1235 dbSNP
rs999442175 1244 dbSNP
rs902469438 1247 dbSNP
rs7230844 1248 dbSNP
rs1234155800 1253 dbSNP
rs111274082 1254 dbSNP
rs1436927762 1263 dbSNP
rs1204030687 1265 dbSNP
rs1278912206 1269 dbSNP
rs1230775849 1277 dbSNP
rs188075954 1279 dbSNP
rs374938557 1280 dbSNP
rs907812863 1284 dbSNP
rs1170603913 1285 dbSNP
rs34737119 1285 dbSNP
rs1390846870 1297 dbSNP
rs1282533430 1304 dbSNP
rs1168646304 1308 dbSNP
rs1049341552 1314 dbSNP
rs930501610 1315 dbSNP
rs138107679 1321 dbSNP
rs182103026 1333 dbSNP
rs910041173 1345 dbSNP
rs1281402327 1360 dbSNP
rs1367716271 1362 dbSNP
rs1437864227 1363 dbSNP
rs1298924726 1369 dbSNP
rs74820194 1371 dbSNP
rs1213406493 1381 dbSNP
rs951579860 1383 dbSNP
rs918803378 1384 dbSNP
rs1210634163 1386 dbSNP
rs988495386 1398 dbSNP
rs1471132960 1399 dbSNP
rs1425308756 1400 dbSNP
rs976984206 1405 dbSNP
rs371923760 1409 dbSNP
rs1248530057 1410 dbSNP
rs1031267131 1413 dbSNP
rs964990480 1415 dbSNP
rs1427600479 1421 dbSNP
rs1017919489 1422 dbSNP
rs557782481 1425 dbSNP
rs1415253244 1428 dbSNP
rs1175847329 1429 dbSNP
rs1458292974 1431 dbSNP
rs1459117148 1434 dbSNP
rs1321811318 1439 dbSNP
rs1365027683 1440 dbSNP
rs1429484731 1441 dbSNP
rs958061980 1445 dbSNP
rs537823446 1446 dbSNP
rs770107141 1447 dbSNP
rs1219420004 1474 dbSNP
rs1032174372 1475 dbSNP
rs999728246 1478 dbSNP
rs1469189454 1492 dbSNP
rs1237643152 1493 dbSNP
rs143574038 1494 dbSNP
rs797021351 1496 dbSNP
rs902353221 1501 dbSNP
rs1046319586 1503 dbSNP
rs968244927 1504 dbSNP
rs191418643 1505 dbSNP
rs996259965 1514 dbSNP
rs1190860010 1517 dbSNP
rs1427378181 1518 dbSNP
rs535493254 1521 dbSNP
rs1018876923 1523 dbSNP
rs1388630220 1524 dbSNP
rs551006517 1527 dbSNP
rs1282069600 1529 dbSNP
rs1186902811 1530 dbSNP
rs886322660 1537 dbSNP
rs1436528511 1538 dbSNP
rs1302156295 1542 dbSNP
rs1343194397 1543 dbSNP
rs937437379 1549 dbSNP
rs567064189 1553 dbSNP
rs1048480133 1560 dbSNP
rs1288745098 1563 dbSNP
rs546869436 1567 dbSNP
rs1349922564 1583 dbSNP
rs145516548 1587 dbSNP
rs78468572 1588 dbSNP
rs1044644496 1590 dbSNP
rs528322106 1591 dbSNP
rs944321049 1601 dbSNP
rs1484155132 1604 dbSNP
rs988443120 1607 dbSNP
rs910879184 1630 dbSNP
rs550597659 1636 dbSNP
rs1165545400 1639 dbSNP
rs985569516 1641 dbSNP
rs530830650 1644 dbSNP
rs957731521 1659 dbSNP
rs1347397814 1663 dbSNP
rs1157578731 1665 dbSNP
rs1301977965 1669 dbSNP
rs1032473132 1675 dbSNP
rs1363404333 1685 dbSNP
rs79545276 1689 dbSNP
rs966511949 1694 dbSNP
rs1308461652 1701 dbSNP
rs968731836 1708 dbSNP
rs1439666327 1711 dbSNP
rs1285897633 1713 dbSNP
rs141983583 1721 dbSNP
rs1245421990 1722 dbSNP
rs1413936077 1726 dbSNP
rs541924401 1727 dbSNP
rs1029141816 1731 dbSNP
rs974899216 1735 dbSNP
rs1013498308 1739 dbSNP
rs1165078403 1751 dbSNP
rs966069206 1753 dbSNP
rs1018992981 1754 dbSNP
rs1442456820 1755 dbSNP
rs1242159079 1758 dbSNP
rs1188890491 1762 dbSNP
rs1004800035 1765 dbSNP
rs895101331 1767 dbSNP
rs1382831523 1775 dbSNP
rs1431053323 1776 dbSNP
rs548732626 1777 dbSNP
rs1215044487 1796 dbSNP
rs748108990 1796 dbSNP
rs528540035 1797 dbSNP
rs905795087 1812 dbSNP
rs1341031945 1816 dbSNP
rs1451796346 1826 dbSNP
rs1312764087 1830 dbSNP
rs780071592 1841 dbSNP
rs1001906414 1844 dbSNP
rs560338459 1845 dbSNP
rs1048932643 1860 dbSNP
rs1250987564 1863 dbSNP
rs949874289 1866 dbSNP
rs1202623041 1876 dbSNP
rs2847539 1881 dbSNP
rs1182313745 1886 dbSNP
rs1215487286 1887 dbSNP
rs80029777 1891 dbSNP
rs1041229962 1892 dbSNP
rs944291780 1904 dbSNP
rs911435973 1927 dbSNP
rs1460123848 1940 dbSNP
rs925626343 1941 dbSNP
rs187682251 1962 dbSNP
rs1304369915 1963 dbSNP
rs1334609197 1989 dbSNP
rs1422219103 1990 dbSNP
rs1435988059 1994 dbSNP
rs1294941525 1997 dbSNP
rs1324950682 2000 dbSNP
rs1384178239 2001 dbSNP
rs1323315237 2006 dbSNP
rs138843328 2006 dbSNP
rs1202095228 2007 dbSNP
rs544487548 2015 dbSNP
rs1430061653 2016 dbSNP
rs575311529 2020 dbSNP
rs1465741192 2026 dbSNP
rs978229285 2027 dbSNP
rs966481425 2029 dbSNP
rs555359114 2033 dbSNP
rs991950306 2034 dbSNP
rs1205245299 2041 dbSNP
rs1260401728 2045 dbSNP
rs1426168445 2048 dbSNP
rs1200582725 2052 dbSNP
rs959198451 2054 dbSNP
rs778427114 2063 dbSNP
rs758929960 2080 dbSNP
rs974847429 2083 dbSNP
rs1488801179 2085 dbSNP
rs1414185257 2088 dbSNP
rs888426070 2093 dbSNP
rs1027015004 2094 dbSNP
rs994203155 2099 dbSNP
rs1382911245 2104 dbSNP
rs1467495487 2105 dbSNP
rs12326772 2114 dbSNP
rs912101177 2115 dbSNP
rs1041113565 2120 dbSNP
rs1222135543 2122 dbSNP
rs1290562999 2129 dbSNP
rs1228476353 2133 dbSNP
rs950888218 2147 dbSNP
rs1008316533 2151 dbSNP
rs889966194 2152 dbSNP
rs1293948993 2155 dbSNP
rs1269232011 2161 dbSNP
rs1490083822 2163 dbSNP
rs1050409613 2164 dbSNP
rs1413878702 2168 dbSNP
rs1419402115 2179 dbSNP
rs1346621679 2181 dbSNP
rs566440115 2184 dbSNP
rs936964921 2185 dbSNP
rs1014221365 2186 dbSNP
rs895646333 2190 dbSNP
rs1402500847 2195 dbSNP
rs924929552 2196 dbSNP
rs1042092203 2199 dbSNP
rs183449588 2200 dbSNP
rs904287219 2206 dbSNP
rs191989732 2212 dbSNP
rs922167870 2217 dbSNP
rs991919276 2220 dbSNP
rs1253476985 2222 dbSNP
rs186774470 2225 dbSNP
rs1169415359 2227 dbSNP
rs1176355690 2233 dbSNP
rs767357325 2234 dbSNP
rs1248414579 2240 dbSNP
rs1433565606 2241 dbSNP
rs944994378 2244 dbSNP
rs1431304716 2245 dbSNP
rs1197223085 2251 dbSNP
rs985098704 2265 dbSNP
rs541675251 2273 dbSNP
rs1170717525 2297 dbSNP
rs183525944 2298 dbSNP
rs751318044 2316 dbSNP
rs1461844932 2319 dbSNP
rs994090436 2327 dbSNP
rs191288171 2341 dbSNP
rs1314907699 2356 dbSNP
rs950803480 2356 dbSNP
rs1019629242 2358 dbSNP
rs920685839 2360 dbSNP
rs568124486 2362 dbSNP
rs970461923 2366 dbSNP
rs1249839165 2368 dbSNP
rs548171926 2371 dbSNP
rs1023009062 2375 dbSNP
rs889934301 2375 dbSNP
rs754291768 2380 dbSNP
rs1484083628 2382 dbSNP
rs1204258004 2418 dbSNP
rs1242377662 2429 dbSNP
rs1442869178 2430 dbSNP
rs186488343 2442 dbSNP
rs1190576836 2444 dbSNP
rs1420578497 2448 dbSNP
rs1014169224 2449 dbSNP
rs141863070 2449 dbSNP
rs959967212 2452 dbSNP
rs1265517644 2453 dbSNP
rs1222266686 2457 dbSNP
rs1336656488 2461 dbSNP
rs1470485182 2461 dbSNP
rs1031482869 2469 dbSNP
rs1344319476 2472 dbSNP
rs1307162256 2476 dbSNP
rs868417924 2487 dbSNP
rs1049955840 2492 dbSNP
rs1001518837 2493 dbSNP
rs1362281834 2501 dbSNP
rs1213651666 2502 dbSNP
rs1292947374 2509 dbSNP
rs904147204 2510 dbSNP
rs1325425431 2515 dbSNP
rs1203995174 2519 dbSNP
rs1262491681 2529 dbSNP
rs1459920511 2540 dbSNP
rs1293073303 2545 dbSNP
rs1210718615 2556 dbSNP
rs1042667831 2558 dbSNP
rs1485559159 2559 dbSNP
rs904237101 2565 dbSNP
rs559573429 2573 dbSNP
rs1043200017 2576 dbSNP
rs996647828 2589 dbSNP
rs1176146689 2590 dbSNP
rs899489073 2592 dbSNP
rs1319501655 2593 dbSNP
rs1345304210 2593 dbSNP
rs1297286833 2600 dbSNP
rs1429332634 2607 dbSNP
rs1286766101 2608 dbSNP
rs1346988591 2609 dbSNP
rs374498799 2610 dbSNP
rs944992650 2622 dbSNP
rs1408071683 2626 dbSNP
rs1040715169 2627 dbSNP
rs917606196 2632 dbSNP
rs1284822834 2639 dbSNP
rs1469277668 2641 dbSNP
rs546242683 2656 dbSNP
rs1213660643 2658 dbSNP
rs1248735236 2659 dbSNP
rs761213237 2667 dbSNP
rs533000513 2670 dbSNP
rs890721679 2671 dbSNP
rs1267237913 2673 dbSNP
rs937772268 2678 dbSNP
rs1182530809 2679 dbSNP
rs1047852495 2695 dbSNP
rs1399669362 2707 dbSNP
rs1420987514 2715 dbSNP
rs929467809 2717 dbSNP
rs1367093630 2718 dbSNP
rs1405158889 2727 dbSNP
rs1248628877 2729 dbSNP
rs1343447249 2731 dbSNP
rs1444029631 2732 dbSNP
rs1280078465 2745 dbSNP
rs926440352 2749 dbSNP
rs1222204582 2750 dbSNP
rs1462023191 2753 dbSNP
rs180775593 2761 dbSNP
rs973889280 2768 dbSNP
rs1222064295 2770 dbSNP
rs145506660 2770 dbSNP
rs775999229 2770 dbSNP
rs915898912 2770 dbSNP
rs951974200 2775 dbSNP
rs959913012 2776 dbSNP
rs1175025768 2778 dbSNP
rs919148062 2780 dbSNP
rs1424703733 2781 dbSNP
rs564225003 2790 dbSNP
rs1363267881 2792 dbSNP
rs1261831793 2797 dbSNP
rs188459374 2799 dbSNP
rs971969220 2802 dbSNP
rs1335143047 2818 dbSNP
rs977241981 2821 dbSNP
rs968953698 2824 dbSNP
rs961337377 2826 dbSNP
rs1021491889 2837 dbSNP
rs370789517 2844 dbSNP
rs34654180 2859 dbSNP
rs1008255654 2862 dbSNP
rs764040814 2868 dbSNP
rs1384704544 2869 dbSNP
rs1272710322 2873 dbSNP
rs1436386178 2887 dbSNP
rs1206159466 2888 dbSNP
rs1028910149 2893 dbSNP
rs762778087 2895 dbSNP
rs1334381060 2896 dbSNP
rs1182430980 2899 dbSNP
rs904030647 2900 dbSNP
rs1019210588 2902 dbSNP
rs1476172896 2904 dbSNP
rs1021191851 2906 dbSNP
rs1007857659 2913 dbSNP
rs890669660 2913 dbSNP
rs1009844921 2916 dbSNP
rs896140132 2917 dbSNP
rs1056175776 2918 dbSNP
rs1406714640 2920 dbSNP
rs1452091229 2921 dbSNP
rs74253096 2927 dbSNP
rs1048446770 2928 dbSNP
rs201955378 2928 dbSNP
rs929611041 2930 dbSNP
rs1491126754 2938 dbSNP
rs10681213 2939 dbSNP
rs1264369447 2939 dbSNP
rs1491181662 2939 dbSNP
rs199656219 2939 dbSNP
rs36125574 2939 dbSNP
rs1455391194 2940 dbSNP
rs1476751566 2941 dbSNP
rs1362176912 2944 dbSNP
rs899318928 2946 dbSNP
rs1429952450 2947 dbSNP
rs575600260 2950 dbSNP
rs565233465 2968 dbSNP
rs1245203532 2970 dbSNP
rs769762513 2973 dbSNP
rs545430473 2975 dbSNP
rs1407214777 2984 dbSNP
rs1049294379 2992 dbSNP
rs1284293851 2996 dbSNP
rs1323510228 2997 dbSNP
rs916008659 2999 dbSNP
rs75902368 3000 dbSNP
rs1262990357 3008 dbSNP
rs1260687484 3017 dbSNP
rs1487083813 3021 dbSNP
rs1201375345 3037 dbSNP
rs1269358648 3038 dbSNP
rs1479963820 3041 dbSNP
rs1173877055 3042 dbSNP
rs1365410655 3043 dbSNP
rs541438195 3062 dbSNP
rs938665307 3077 dbSNP
rs1207447633 3088 dbSNP
rs919104274 3090 dbSNP
rs971938223 3117 dbSNP
rs1259707186 3121 dbSNP
rs1406973774 3126 dbSNP
rs1246085671 3134 dbSNP
rs1361084692 3137 dbSNP
rs1303938913 3138 dbSNP
rs1312494233 3139 dbSNP
rs572927008 3147 dbSNP
rs944656045 3156 dbSNP
rs1244924460 3162 dbSNP
rs1309854238 3171 dbSNP
rs977732745 3176 dbSNP
rs552810875 3180 dbSNP
rs114058123 3181 dbSNP
rs1259606820 3182 dbSNP
rs1350800303 3185 dbSNP
rs1224289284 3202 dbSNP
rs1291969857 3217 dbSNP
rs1189235772 3220 dbSNP
rs986804681 3239 dbSNP
rs954190512 3240 dbSNP
rs766360331 3241 dbSNP
rs1380515714 3248 dbSNP
rs570715298 3252 dbSNP
rs1181247424 3254 dbSNP
rs1382874614 3256 dbSNP
rs1028376316 3257 dbSNP
rs557092994 3268 dbSNP
rs777009799 3287 dbSNP
rs1387257941 3288 dbSNP
rs979940497 3289 dbSNP
rs968224512 3290 dbSNP
rs1456768785 3295 dbSNP
rs1300227243 3296 dbSNP
rs537392899 3303 dbSNP
rs2586779 3304 dbSNP
rs1007972425 3305 dbSNP
rs896779510 3307 dbSNP
rs1035273790 3311 dbSNP
rs8094063 3314 dbSNP
rs1263123171 3316 dbSNP
rs1358280679 3320 dbSNP
rs1219162691 3321 dbSNP
rs1252835869 3325 dbSNP
rs904871455 3327 dbSNP
rs1195193443 3333 dbSNP
rs534694651 3333 dbSNP
rs566035629 3337 dbSNP
rs1184277920 3341 dbSNP
rs1289102305 3343 dbSNP
rs897650952 3344 dbSNP
rs1384886814 3345 dbSNP
rs899434982 3350 dbSNP
rs1221344521 3358 dbSNP
rs114243590 3364 dbSNP
rs778231217 3365 dbSNP
rs944624924 3366 dbSNP
rs1461737872 3367 dbSNP
rs1271782521 3386 dbSNP
rs1329928673 3398 dbSNP
rs1408925018 3402 dbSNP
rs1454181210 3406 dbSNP
rs1336780426 3407 dbSNP
rs911773133 3412 dbSNP
rs1378060080 3415 dbSNP
rs986463852 3417 dbSNP
rs1297228469 3426 dbSNP
rs1224973255 3435 dbSNP
rs1307867626 3438 dbSNP
rs532596121 3439 dbSNP
rs186402779 3442 dbSNP
rs932642810 3443 dbSNP
rs1325724044 3445 dbSNP
rs1204437328 3448 dbSNP
rs1283872776 3449 dbSNP
rs921285700 3454 dbSNP
rs1188508926 3461 dbSNP
rs1420419938 3462 dbSNP
rs979526376 3465 dbSNP
rs968570890 3467 dbSNP
rs1470579095 3470 dbSNP
rs550792830 3482 dbSNP
rs988268524 3483 dbSNP
rs1445090776 3487 dbSNP
rs530854776 3493 dbSNP
rs1290321804 3494 dbSNP
rs562203559 3500 dbSNP
rs894522723 3504 dbSNP
rs1399206440 3511 dbSNP
rs1367568510 3513 dbSNP
rs1057234296 3517 dbSNP
rs1325357422 3528 dbSNP
rs867579306 3533 dbSNP
rs1224080630 3534 dbSNP
rs960872423 3536 dbSNP
rs1310529457 3541 dbSNP
rs1405064106 3542 dbSNP
rs1242981638 3560 dbSNP
rs1035242363 3562 dbSNP
rs866740081 3568 dbSNP
rs969063722 3569 dbSNP
rs1271530842 3571 dbSNP
rs1027763826 3580 dbSNP
rs748571405 3582 dbSNP
rs1041743534 3585 dbSNP
rs1474645771 3592 dbSNP
rs1345465489 3600 dbSNP
rs1418733437 3604 dbSNP
rs1423489099 3610 dbSNP
rs561946324 3617 dbSNP
rs1200832203 3619 dbSNP
rs947268226 3627 dbSNP
rs1481119737 3628 dbSNP
rs1347164239 3631 dbSNP
rs1266222642 3634 dbSNP
rs1405265528 3635 dbSNP
rs1274242022 3638 dbSNP
rs1365401953 3640 dbSNP
rs994590531 3644 dbSNP
rs1285019279 3647 dbSNP
rs542072227 3650 dbSNP
rs572773665 3659 dbSNP
rs202157690 3660 dbSNP
rs1008716704 3664 dbSNP
rs912431528 3668 dbSNP
rs1193807917 3669 dbSNP
rs879780982 3670 dbSNP
rs866314251 3672 dbSNP
rs1263644228 3677 dbSNP
rs1408115494 3683 dbSNP
rs779680112 3687 dbSNP
rs1347450241 3693 dbSNP
rs951160227 3708 dbSNP
rs1025711086 3714 dbSNP
rs1281388135 3719 dbSNP
rs1322617341 3728 dbSNP
rs1348103571 3732 dbSNP
rs543373490 3735 dbSNP
rs1050384981 3740 dbSNP
rs1280030971 3745 dbSNP
rs1376264129 3746 dbSNP
rs574138774 3752 dbSNP
rs963928762 3754 dbSNP
rs1317507257 3774 dbSNP
rs1360396035 3782 dbSNP
rs1209668093 3789 dbSNP
rs1288189242 3791 dbSNP
rs1439876891 3794 dbSNP
rs921284369 3820 dbSNP
rs1331168576 3823 dbSNP
rs1238041895 3831 dbSNP
rs755566054 3840 dbSNP
rs559256230 3841 dbSNP
rs1386750850 3842 dbSNP
rs749015338 3849 dbSNP
rs557570448 3850 dbSNP
rs1166960740 3854 dbSNP
rs11553953 3858 dbSNP
rs1411397561 3860 dbSNP
rs1471281053 3861 dbSNP
rs1002939666 3862 dbSNP
rs1399446373 3863 dbSNP
rs903285283 3873 dbSNP
rs545590231 3881 dbSNP
rs576521025 3882 dbSNP
rs988210816 3885 dbSNP
rs1234213925 3897 dbSNP
rs1341926858 3911 dbSNP
rs536741937 3917 dbSNP
rs1456800804 3929 dbSNP
rs1457134810 3936 dbSNP
rs928093737 3937 dbSNP
rs1244469295 3938 dbSNP
rs1442455305 3942 dbSNP
rs17663175 3943 dbSNP
rs1476305198 3949 dbSNP
rs1039589470 3967 dbSNP
rs76801983 3968 dbSNP
rs1321269000 3969 dbSNP
rs912379236 3972 dbSNP
rs1406925343 3974 dbSNP
rs1395468068 3975 dbSNP
rs1332510235 3976 dbSNP
rs1027322614 3985 dbSNP
rs867654043 4004 dbSNP
rs1277940017 4005 dbSNP
rs961678763 4008 dbSNP
rs1014652626 4009 dbSNP
rs1225922592 4015 dbSNP
rs1008580802 4023 dbSNP
rs181804934 4026 dbSNP
rs1281469674 4027 dbSNP
rs1440367109 4029 dbSNP
rs1199378272 4032 dbSNP
rs1376623123 4036 dbSNP
rs1193868489 4037 dbSNP
rs1262235327 4037 dbSNP
rs1448346048 4037 dbSNP
rs1201517482 4038 dbSNP
rs1476676792 4038 dbSNP
rs974105302 4040 dbSNP
rs1337727734 4041 dbSNP
rs1170860259 4045 dbSNP
rs1454930062 4061 dbSNP
rs763848628 4074 dbSNP
rs1338909894 4077 dbSNP
rs190407013 4080 dbSNP
rs904478761 4081 dbSNP
rs1231945211 4083 dbSNP
rs1042972084 4086 dbSNP
rs535273155 4098 dbSNP
rs74894437 4101 dbSNP
rs75544155 4105 dbSNP
rs34324817 4108 dbSNP
rs185182757 4122 dbSNP
rs116382695 4131 dbSNP
rs1487218622 4150 dbSNP
rs1224434265 4152 dbSNP
rs1438763329 4154 dbSNP
rs1020366202 4160 dbSNP
rs1196600711 4161 dbSNP
rs928161651 4163 dbSNP
rs1365637092 4165 dbSNP
rs1012109883 4176 dbSNP
rs1440326511 4176 dbSNP
rs530740167 4186 dbSNP
rs893124734 4188 dbSNP
rs969579218 4198 dbSNP
rs1294461174 4199 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ggGGUGGAAA--AGAAGGGgg 5'
            :||  |||   ||||||  
Target 5' --UCAAGUUUCCCCUUCCC-- 3'
 		1 - 17
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000428869.2 | 3UTR | UCAAGUUUCCCCUUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
181 hsa-miR-4271 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066209 MARCH9 membrane associated ring-CH-type finger 9 2 2
MIRT079367 CCDC137 coiled-coil domain containing 137 2 2
MIRT081183 MIDN midnolin 2 4
MIRT083278 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT086207 HOXD13 homeobox D13 2 2
MIRT133713 SKI SKI proto-oncogene 2 4
MIRT150653 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159166 NRBP1 nuclear receptor binding protein 1 2 2
MIRT160059 TET3 tet methylcytosine dioxygenase 3 2 4
MIRT180856 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT181931 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT190628 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT190654 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196107 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT263248 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT321168 EIF4H eukaryotic translation initiation factor 4H 2 2
MIRT338624 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT366301 GDI1 GDP dissociation inhibitor 1 2 4
MIRT375172 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT441488 NCEH1 neutral cholesterol ester hydrolase 1 2 2
MIRT442333 WNT9B Wnt family member 9B 2 2
MIRT443889 CNKSR3 CNKSR family member 3 2 2
MIRT445880 WBP1L WW domain binding protein 1 like 2 2
MIRT449312 MRO maestro 2 2
MIRT449844 BCL2L13 BCL2 like 13 2 2
MIRT450304 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT450515 EMX1 empty spiracles homeobox 1 2 2
MIRT451243 ZNF444 zinc finger protein 444 2 2
MIRT451713 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451792 TLR5 toll like receptor 5 2 2
MIRT451823 ALDH3B1 aldehyde dehydrogenase 3 family member B1 2 2
MIRT451906 ILK integrin linked kinase 2 2
MIRT452181 KIAA1456 KIAA1456 2 4
MIRT452242 TRAM1 translocation associated membrane protein 1 2 2
MIRT452544 ZNF467 zinc finger protein 467 2 2
MIRT452605 REPIN1 replication initiator 1 2 2
MIRT454505 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT454657 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT455354 KDM5C lysine demethylase 5C 2 2
MIRT455452 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 2 2
MIRT455587 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT456501 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 2 2
MIRT456815 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT457425 NOL10 nucleolar protein 10 2 2
MIRT457468 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457660 SERINC1 serine incorporator 1 2 2
MIRT458231 NXPH3 neurexophilin 3 2 2
MIRT458374 ITM2C integral membrane protein 2C 2 2
MIRT458667 GPR35 G protein-coupled receptor 35 2 2
MIRT459665 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT459825 TPP1 tripeptidyl peptidase 1 2 2
MIRT460564 FEM1A fem-1 homolog A 2 2
MIRT460725 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT461121 RAB36 RAB36, member RAS oncogene family 2 2
MIRT461529 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461750 DDX11 DEAD/H-box helicase 11 2 2
MIRT462570 STS steroid sulfatase 2 2
MIRT462798 NTN1 netrin 1 2 2
MIRT463030 ZNF689 zinc finger protein 689 2 2
MIRT463991 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464684 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT465439 TP53 tumor protein p53 2 2
MIRT465512 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465649 TNPO2 transportin 2 2 10
MIRT465947 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466028 TMEM189 transmembrane protein 189 2 2
MIRT468076 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT468131 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468498 SESN2 sestrin 2 2 2
MIRT468879 RREB1 ras responsive element binding protein 1 2 2
MIRT469318 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469558 RARA retinoic acid receptor alpha 2 2
MIRT469793 RAB15 RAB15, member RAS oncogene family 2 2
MIRT469896 PTRF caveolae associated protein 1 2 2
MIRT470235 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470808 PLXND1 plexin D1 2 2
MIRT471597 PAQR5 progestin and adipoQ receptor family member 5 2 10
MIRT471710 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT471752 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT472978 MRRF mitochondrial ribosome recycling factor 2 2
MIRT473538 MAX MYC associated factor X 2 2
MIRT473581 MAT2A methionine adenosyltransferase 2A 2 2
MIRT473970 LRRC58 leucine rich repeat containing 58 2 2
MIRT474223 LCOR ligand dependent nuclear receptor corepressor 2 4
MIRT474553 KLHDC3 kelch domain containing 3 2 2
MIRT474777 KIAA0895L KIAA0895 like 2 2
MIRT476042 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476438 GBA2 glucosylceramidase beta 2 2 2
MIRT477773 E2F3 E2F transcription factor 3 2 4
MIRT477946 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478782 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479320 VPS72 vacuolar protein sorting 72 homolog 2 2
MIRT480405 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480593 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT480963 BBC3 BCL2 binding component 3 2 2
MIRT481127 AZIN1 antizyme inhibitor 1 2 4
MIRT481444 ARRB2 arrestin beta 2 2 2
MIRT481687 AR androgen receptor 2 2
MIRT481730 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482386 AEN apoptosis enhancing nuclease 2 2
MIRT482564 ABHD2 abhydrolase domain containing 2 2 2
MIRT482605 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483256 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 2 4
MIRT483531 TAGLN2 transgelin 2 2 2
MIRT483840 UNC5B unc-5 netrin receptor B 2 4
MIRT483935 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484414 SNX19 sorting nexin 19 2 2
MIRT484487 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484609 SIX3 SIX homeobox 3 2 6
MIRT484703 RNF11 ring finger protein 11 2 2
MIRT485244 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT485607 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT485965 RTBDN retbindin 2 2
MIRT487308 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487329 SREBF1 sterol regulatory element binding transcription factor 1 2 4
MIRT487410 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487607 C20orf96 chromosome 20 open reading frame 96 2 2
MIRT487689 CDK14 cyclin dependent kinase 14 2 2
MIRT487787 GPR20 G protein-coupled receptor 20 2 4
MIRT488026 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT488476 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 2 2
MIRT488761 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489161 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489529 MRE11A MRE11 homolog, double strand break repair nuclease 2 8
MIRT489774 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489878 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT490094 FN3K fructosamine 3 kinase 2 2
MIRT490202 PKNOX2 PBX/knotted 1 homeobox 2 2 2
MIRT490283 ISL2 ISL LIM homeobox 2 2 2
MIRT490377 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491035 ALPK3 alpha kinase 3 2 2
MIRT491186 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 4
MIRT491766 ZNF385A zinc finger protein 385A 2 2
MIRT491888 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT491981 UNK unkempt family zinc finger 2 2
MIRT492400 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT493647 HDLBP high density lipoprotein binding protein 2 2
MIRT494010 DUSP9 dual specificity phosphatase 9 2 2
MIRT494167 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 2
MIRT495712 PADI1 peptidyl arginine deiminase 1 2 2
MIRT496873 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT499175 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT501652 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT506645 MAPK1 mitogen-activated protein kinase 1 2 4
MIRT510590 TUBB2A tubulin beta 2A class IIa 2 6
MIRT511907 FKBP1A FK506 binding protein 1A 2 2
MIRT513063 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513104 DYNAP dynactin associated protein 2 2
MIRT521804 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT523520 GLUL glutamate-ammonia ligase 2 2
MIRT525085 FRK fyn related Src family tyrosine kinase 2 2
MIRT530930 SCIN scinderin 2 2
MIRT533501 TRIM71 tripartite motif containing 71 2 2
MIRT538560 CECR2 CECR2, histone acetyl-lysine reader 2 2
MIRT544556 CSNK2A1 casein kinase 2 alpha 1 2 2
MIRT555912 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT560405 TMEM69 transmembrane protein 69 2 2
MIRT560664 RTN3 reticulon 3 2 2
MIRT564061 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT565504 SP1 Sp1 transcription factor 2 2
MIRT570014 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572321 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573229 TRIM21 tripartite motif containing 21 2 2
MIRT573487 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574137 MARVELD1 MARVEL domain containing 1 2 2
MIRT574323 ZNF703 zinc finger protein 703 2 2
MIRT620939 OSMR oncostatin M receptor 2 2
MIRT650080 MTL5 testis expressed metallothionein like protein 2 2
MIRT684553 ZNF708 zinc finger protein 708 2 2
MIRT685841 ANGEL1 angel homolog 1 2 2
MIRT688551 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT701985 MIER3 MIER family member 3 2 2
MIRT703899 EPT1 selenoprotein I 2 2
MIRT706388 MC2R melanocortin 2 receptor 2 2
MIRT707487 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT711885 INSIG2 insulin induced gene 2 2 2
MIRT719164 KIF6 kinesin family member 6 2 2
MIRT721294 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT721775 ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 2 2
MIRT723763 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 2
MIRT725485 GPR26 G protein-coupled receptor 26 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miR-4271 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-miR-4271 Platinum-based doublet chemotherapy sensitive High Lung Adenocarcinoma tissue
hsa-miR-4271 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4271 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PATU8988)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved resistant Low Tongue Squamous Cell Carcinoma cell line (CAL-27, SCC-9)
hsa-miR-4271 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (H460)
hsa-miR-4271 Anlotinib 25017411 NSC832523 sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-miR-4271 Gefitinib 123631 NSC715055 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-miR-4271 Icotinib 22024915 NSC800770 sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-miR-4271 Erlotinib 176870 NSC718781 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-4271 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-4271 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved sensitive cell line (BGC-823)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (cytosolic RNA)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-4271 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-4271 Platinum-based doublet chemotherapy sensitive tissue (lung adenocarcinoma)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4271 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-4271 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4271 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-4271 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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