miRTarBase - #MIRT449368


—
pre-miRNA Information
pre-miRNA hsa-mir-4672   
Genomic Coordinates chr9: 127869415 - 127869495
Description Homo sapiens miR-4672 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4672
Sequence 51| UUACACAGCUGGACAGAGGCA |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1234304182 2 dbSNP
rs1012722802 6 dbSNP
rs1212523496 9 dbSNP
rs1027978850 10 dbSNP
rs1212553533 14 dbSNP
rs895240447 18 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ANTXR2   
Synonyms CMG-2, CMG2, HFS, ISH, JHF
Description anthrax toxin receptor 2
Transcript NM_058172   
Other Transcripts NM_001145794   
Expression
Putative miRNA Targets on ANTXR2
3'UTR of ANTXR2
(miRNA target sites are highlighted)		 
>ANTXR2|NM_058172|3'UTR
   1 AAGGGAAGCAGGAAGACCAAGAAGGTACGAAGATGGCACATTTTCACATAGCTGATTTTCAACCAAATGAAAAAAATCAA
  81 GTGCATTTCAGAAGCTTTTGGAAGAGCAGCTTAATTCCTCTCAGTCGGGAAATGTTTTCTCTGCCTTCTGCTTTGCTTGC
 161 ACCAAACATTTCTAAACACTTGTTCTGCCATCTACATGGGAGGTGATGAAACTCAGTGGTAACTCATGATTTATGACATT
 241 GAAAATAAAGAGGAACATTGACCTGCAGACTATGGTTTGTACAAGAAAGTTTGTTTGAATGTGTAGAAGAGGAAAAAGCA
 321 ACAACAGCAACAACACGAAGATGATACCAAAACAAGGACCACAAAACAACTAGCCATGATGGGAGACAGGAGTTTTTTAC
 401 ATGGAAACATGGCACTTGTGTTTTTATGTGGCAAGATCTTTATCCATAGGCAGAGTATGAAATTTCCCACCAGGCTAAGC
 481 AAATAAAGAAGTCCATTGCCTTATAGCTATGTCAGATCACAGAATCCTTCCAAGTGCTCTATCACAGTGTGCCTTATGGG
 561 AAGTTTCTGACTGGAAAATCTTGTCATTCTAACACTGAAAAGTGCACACGCATGACAAAATGTAGACAAGATGCCTCAAG
 641 GTATTGGTAGCAAGCAAGATTTTGCCCTTTAGTTTTCGAAGACACCTTTCTTTCATTATGCACTCGGGACAAGAAAATTA
 721 ATAGAGCGTTATTCCACAGAAGGCCTCTAGCCAGAGATCTTGAGTGTAGTGCAAGGGACTCATTTTTTGCGAACTTGTCC
 801 CTGTGACTAGTAGATTCCCCCTTTTCCTGTGTTTAGGATTTAGTAGTGCATAAAGCATTAATATCCATAAACATACCTAG
 881 AAGTTTGTTTTGCTTTTAATTTAAAGGAAGCAGTAACCACAAAGCTTCCGCTCAGGGTTTTTTCTTTCTTCAAGTCTCCA
 961 AGGGCTCTTCAGCGTCACAAGCCAGCAACTCTCTTTGCATTAAAATTTCAAAGTTTAATTAATATAATTAAAAGCAACAG
1041 CAAGCAGCAGCCTGTGAAGATTTTGCTCATCTTTTTTATGCCTTTTGACATTGAATGACCTATTACTGTATGCGCATTAC
1121 TTGGATTTTGAGGGGCACTCTACCTTGGTTATGATTCAGTAGAGGAAAAAGACCACCTTTCTTCAATTTACAAATTAAAT
1201 CTTCTGGAGGGTCGCTATCACAAAACATTGACGATGTATGTATTATAATTTTTTAGAAAAACCACCATCGTGTCACGTCG
1281 ACGATGCCAAATTATGTTAGCGTGAGCAGAAACACCGTGGGGGAGGAAGGCAGCAGCTGAAGAAAAAAGCTCAAATGATC
1361 TAGTCACTTTCGATACTGTACTTCAGATGCGAAATGGATATTCGAGTGGAAACCTGACAAAGTGCGCCTGCTTTGATGTG
1441 AACTGGTATAGACAATGACCAGTGGCTGGGTCAGTGGGATGTCTCTCTGTGAGCACAAAGGCTTATCAAATGACACTAAA
1521 AATAAGTTCAACAACCATCACATTGGAAGGGAGAAGGCGAACATTTCATGTTTGGCGGGCATGTGAGTGCACAAGATGGA
1601 AAGAGCGATTGGAGCATCCTGGTATAATTACCCCCATTGTGCTCTTAATGGAAATTTCAAAGGACGGGAGTATTCTGTTG
1681 GTTGGTGTCCAGGTTTGTGGCACTGTTCCAAGAGGCCTTACACACACACACAAATATATAATTTTCTATACATATATATC
1761 CTCTAGCTTGAAACTTTTGCTCAAGTTTATTTATGTCACTGGCTGGCTGGATCCAAAGTCATGTGTCCACACATTCATAA
1841 ATAAAAATTTTACCTATGCCTGTGCTACCATTTCTTTAAGCCCACATAAAGCTAATGCCTTCTTGGGTTGAATATGCAGT
1921 TGTTATGCTTAGTTTCAGGGATGGAATTCTATTCAGTTCCAAAATGTCCCTCATGTTCACAGATGATACTATTGGCAGTA
2001 GCTGCATATGCAAGTGTAACTTGGAAGCCTGATATAGTATACCCAACCCTTTCTGCAATGAGTTATTGTATCCCTTTGTT
2081 CTGCATTTGCATCTGGAACAAGACCTAATGTGGCTTCCTTAAATGGGCACTTCATTTCTGATGAGTGCACACCAATTATT
2161 GCTATTTTAATATCATTGAGAATACTACAGAAGCTAAGGCTATGTTTCTTTGGTAACTACTTCAAATTTCTCTAGAATTA
2241 TGTAGCATACTTACATTTTGCTGCATGAACAATGAAAATTAACCTCTGCCTTTAAATGGAAAAATAACTTTCTGTAGATT
2321 GTTATACAGCTACTATGAAGAGCTCTTAATGAAGAGGAAGTGGCAGTGGTCTATATGTAGACTGAAAAAATATCATTAAT
2401 AAAGTTCAAAGACTGATGGAATTTCATTGCCCTTAAAGATATGAACCAGATCTGTTTTATGCTTTTCTCCAATTATACTA
2481 ACTAGCAGTTGAAAAGAATTTGTTTTGAAGAGTGTTATTTTCTTACCAAAAGACCAGATCAAAAATCCCTATACTTTTCC
2561 ACCAAAAAAAGATTAAAATGAAGCCATTTCTATAAATTTAATGGCACTTTATATTTTATATAGAGAAATAGCTTCTGTTT
2641 GATTTTCTGGACACCATGTCAGTCAAGATCTACTTTCTGTGTAAAAATGAATAAGTCTTGCACATAATCCATTCGTGTTG
2721 CATAAGGTTGCAAAAACAATTAAGTGGGAAATGACTCCTAACTTATGTGTCTACTCTGCCTAGAAAGAAAGTTTTGAAGG
2801 CATCTATATATATTTCATAACAATGTCTGTTCTTTATGGATTTGATCCATAAATATTTATCTATCTGAAAACTTTGATAC
2881 TTGGAATGTTTTCCTTAGAGCATTTGGTGCTCCAAGAAAAAACATTTGGTGCTAAGAGTTGCAGCACTGATGCCTTTCCC
2961 TAAGTTAATTCTATTTTAAAAATTTATATTTCCTTCCCAATGAGATGCAGAGTAAAATTTGAGACCCTCCATTGACTAGG
3041 GAGCAGCATCTGTCATCTATGGTTAATTACTATTTTGACAAAAATATAGAAGGTTTAAACCCCCATGTATTTCAGATTGT
3121 TAGAGAAAGAAGTAGTTTGCTTATATTTCCCTTGAACTTTATTCTAACCATTTAAATAATAAATTATTCAATATTTGTTA
3201 TAATAAATCCTTACTAGATACAAGATTTGGGTGTTTCTGTGAAGTTAACTTTATTATCTAAATATCACTAACCATTGTTT
3281 ACTGCTCAGAGGCAGATACATTTGTTTAGTTTAAAGTTGAAACAAATTCTATATTGTGGATAATTAGGTGTTTAAAACAT
3361 TTTGATAGACCAGCTTATATATGTTATTTTTGAAATTTAAGAAGGCAGAATGTAATTAGGTCACATTTACAAGTAGAAGG
3441 AATTATAACTTCCTACTCCATGCATATATTGTATATTGGTTAGCTTTTACTAGCATTTTCTAGCATCACATTACTTTAGA
3521 AAGTTTTTGAGAGTTTCATTACTACTGGAAAAGTTTGGTGGGTATATGTACACAGGAAAGAAATATATGCATCATTTCAA
3601 TATGAAAGGAAATACATAATCTAGAAACATAGAATAACTCTTGGTACATCTGTTACATAGTTAAGGAAAGAAACAGGCAG
3681 GTGAGGCTGGAGAATGTTGTCTATTTGTAGGAAATAAAGTCAGTGCAGACGCATATTCTAGTTTAGAGTTAGATTAATAT
3761 TGTGCTTAGTGAATTTCTATGACATATTTCTGAGAACACTTTAATATATTTCCACACCTACTGGAATCTAATTCAGTCGA
3841 TCGGATAAAAGAAAGACTTTTTTGTTGTTGTTTTTGAAAATCCATAATGTAGCAGGTTCTGCGCTGGTTTTTTAATGTAT
3921 TTTATTTTTGTGCTCTCCTGCCAAAAGAAAAGGCTGATAAGTAAGTACACAGTACAACATGTAAATTTGTATAAAAATAT
4001 GCTTGTTTAGATTGCTCTACAATAACTATATTAAGGTAAATTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAAA
4081 CAGAGGGAGAATTGACTCAATGTGTTTTCTATGAAGAGTCTTAGCTTAGGAATCAGGTAACAGAGAGGTCCTAGACCATA
4161 GACCCAGCCATCAACTAGCTTGCTGATGTTGAACAGATCAACTCTCAACCATAGACTGAAGATGGAATGAAGATATCAAA
4241 AGTTCCTTTTAGCACTGACTAGATTTTTTTTCTTTTTTTTGAAACAGAGTCTCACTCTGTCACCCAGGCTGGAGTTCAAT
4321 GGCATGGTCTGGGCTGACTGTAACCTCCTCTTCCTGGGTTCAAGTGATTCTCATCCCTCAGCCTCCTGAGTAGCTGGGAT
4401 TACAGGCACATAACACCACACCCAGCTAACTCTTGTATTTTTGTAGAAATGGGGTTTCGCTATGTTGCTCAGACTGGTCT
4481 CAAACACCTGGCCTCAAGTGATCCTCCTGCCTCAGTCTCCCAAATGCTGTGATTACAGGCACAAGCTACTGCACCAGGCC
4561 TCTGACTACATTTCTATTAATATGGTTAGGTTGGAGGTTTTAGTATTTTTGTATCTCATATTTGTATCAATATGACTGGC
4641 TTCTTTGTCTGTAGTGTGTGGTAATATTAGTTCTGTAAACTGTCAGTTGCAAAAAAAAAAAATACCTTGAACTATAGTAT
4721 ATGTTGATAATTAGCCATAATAATTTCTTAGTTAATTTCTTATAATTAAATTTGTCAAAGAGGAAACTTACAGTTTATAT
4801 CTGATGAAATCTCTAAAAAGATGGGTAAAACATTGGGAAATGTATGCATGTACTTCACTCTGGTTTCATAGGGTTAGCAA
4881 GTGTCTTAAAAACATATATAAAGAAGCACAGAGATTGTTAGGAGATATTTATGCTCCCAGTTTTAATAATTGGGATACTT
4961 TGTATACCACAGAAAGAAAAATTACTAAACTCCTCTTTTTTTAGTCAAAATTGGAAAAAAAGTCTTAATTGACAGTTACT
5041 ATGCCTGTGCTACCCATAGCAAGTATTCAGTGGAAAATACTTTACTAAGTAAGTAATTTGAACACAGCTTAAAATCCATA
5121 GTATGTTACAATTGCTAGCCTTTCACAAAGTTTGCATTGTCTTAATGTAGAAGGATACTGTGATCTAAGAATTCACAATT
5201 TTAAAAAGTGGAACCTAAATAGGGTTTCCTAATTGCCATGAAGTTATTTGTATCTTAGATGAATTATATTTACAACATTG
5281 TAAATGTCAGTGGGTGATCCAAAATAAATTGTTAAAGTTATTAAAATGTACATTTAAGTAGGTTTCAGTTTGACTAGAAA
5361 TAATTGGCAAGAAGGCAAGAACTAGTCTTCTAGAGCAGGGATCCCATCCCCCAGGTCATGGACTGGTACTGGTCCATGGC
5441 CTGTTAGAAACCAGGCCACACAGCAGGAGATGAGTGGAAAGCAAGTGAAACTTCATGGGTATTTACAGCAATTCCCCGTC
5521 GCTCGCATTACCACCTGAGCTGTGTCTCCTGTGAGATCAGCAGCAGCATTAGATTCTCAAGGAGCACAAACCCTTTTGGA
5601 ACTGTGTGTGAGGGATCTAAGTTGCGCATTTCTTATGAGAATCTAATACCTGATGATCTGTTGTTGTCTCCCACCACCCC
5681 CAGATGGGACCATCTAGTTGCAGGAAAACAAGCTCAGGCTCCCACTGATTCTACATTATAGTGAGTTGTGTAATTATTTC
5761 ATTATATATAACAATGTAATAATAATAGAAATAAAGTACATAATAAATGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acggAGACAGGUC---------GACACAUu 5'
              || ||| ||         ||||||| 
Target 5' catgTCAGTCAAGATCTACTTTCTGTGTAa 3'
 2655 - 2684 145.00 -12.70
2 
miRNA  3' acGGAGACAGGUCGACACAUu 5'
            |||:| |  | ||||||: 
Target 5' acCCTTT-TGGAACTGTGTGt 3'
 5590 - 5609 138.00 -12.60
3 
miRNA  3' acGGAGACAGGUCGACACAuu 5'
            || || |:|  ||||||  
Target 5' tcCCCCTTTTC--CTGTGTtt 3'
 816 - 834 135.00 -10.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
905533 28 ClinVar
905532 130 ClinVar
905531 242 ClinVar
905530 245 ClinVar
905529 263 ClinVar
904745 336 ClinVar
904744 380 ClinVar
904743 559 ClinVar
904742 677 ClinVar
904741 702 ClinVar
904740 703 ClinVar
904739 728 ClinVar
904738 752 ClinVar
906996 784 ClinVar
906995 785 ClinVar
906994 947 ClinVar
906993 1085 ClinVar
906992 1099 ClinVar
906991 1113 ClinVar
905975 1114 ClinVar
905974 1126 ClinVar
905973 1133 ClinVar
905972 1136 ClinVar
905971 1295 ClinVar
905970 1397 ClinVar
905969 1476 ClinVar
905968 1501 ClinVar
905460 1521 ClinVar
905459 1558 ClinVar
905458 1563 ClinVar
905457 1663 ClinVar
905456 1671 ClinVar
905455 1682 ClinVar
905454 1795 ClinVar
904672 2187 ClinVar
904671 2225 ClinVar
904670 2226 ClinVar
904669 2245 ClinVar
904668 2256 ClinVar
904667 2303 ClinVar
904666 2306 ClinVar
904665 2429 ClinVar
907982 2446 ClinVar
907981 2550 ClinVar
907980 2666 ClinVar
907979 2839 ClinVar
907978 2888 ClinVar
907977 2899 ClinVar
907976 2959 ClinVar
907975 3105 ClinVar
905909 3212 ClinVar
905908 3371 ClinVar
905907 3468 ClinVar
905906 3473 ClinVar
905905 3533 ClinVar
905904 3544 ClinVar
905903 3597 ClinVar
905902 3602 ClinVar
905398 3606 ClinVar
905397 3649 ClinVar
905396 3695 ClinVar
905395 3707 ClinVar
905394 3843 ClinVar
905393 3888 ClinVar
905392 3902 ClinVar
905391 3953 ClinVar
904604 4056 ClinVar
904603 4058 ClinVar
904602 4194 ClinVar
904601 4201 ClinVar
904600 4223 ClinVar
904599 4264 ClinVar
904598 4272 ClinVar
904597 4332 ClinVar
907909 4462 ClinVar
907908 4504 ClinVar
907907 4576 ClinVar
907906 4630 ClinVar
907905 4668 ClinVar
907904 4703 ClinVar
907903 4712 ClinVar
907902 4847 ClinVar
906923 4856 ClinVar
906922 4917 ClinVar
906921 5223 ClinVar
906920 5266 ClinVar
906919 5310 ClinVar
906918 5358 ClinVar
906917 5413 ClinVar
906916 5425 ClinVar
905315 5524 ClinVar
905314 5525 ClinVar
905313 5527 ClinVar
905312 5547 ClinVar
905311 5602 ClinVar
905310 5761 ClinVar
COSN30133985 4 COSMIC
COSN31560393 9 COSMIC
COSN30154780 10 COSMIC
COSN31502983 12 COSMIC
COSN31508658 21 COSMIC
COSN30448867 22 COSMIC
COSN30127151 29 COSMIC
COSN26966238 39 COSMIC
COSN30473900 45 COSMIC
COSN31514428 62 COSMIC
COSN30520691 69 COSMIC
COSN31603015 77 COSMIC
COSN30153864 122 COSMIC
COSN30516507 126 COSMIC
COSN30462620 128 COSMIC
COSN31570629 139 COSMIC
COSN6844846 157 COSMIC
COSN31558947 172 COSMIC
COSN30672253 188 COSMIC
COSN31492271 219 COSMIC
COSN10035731 408 COSMIC
COSN30538446 437 COSMIC
COSN24300422 521 COSMIC
COSN31529291 677 COSMIC
COSN9242659 702 COSMIC
COSN24300752 827 COSMIC
COSN31539300 865 COSMIC
COSN31483264 872 COSMIC
COSN31536022 891 COSMIC
COSN7844277 1040 COSMIC
COSN31540651 1044 COSMIC
COSN26642935 1060 COSMIC
COSN30176372 1140 COSMIC
COSN31517580 1201 COSMIC
COSN21300220 1266 COSMIC
COSN2046113 1402 COSMIC
COSN9242658 1469 COSMIC
COSN31551853 1486 COSMIC
COSN26671816 1506 COSMIC
COSN24300749 1575 COSMIC
COSN31603399 1577 COSMIC
COSN31579422 1606 COSMIC
COSN31526890 1607 COSMIC
COSN31579244 1639 COSMIC
COSN31561665 1688 COSMIC
COSN6844845 1831 COSMIC
COSN15661150 1986 COSMIC
COSN10035730 2437 COSMIC
COSN6844844 2624 COSMIC
COSN6844843 3170 COSMIC
COSN20100259 3310 COSMIC
COSN26819948 3403 COSMIC
COSN4839261 3499 COSMIC
COSN20091062 3586 COSMIC
COSN5578501 3612 COSMIC
COSN2046112 3677 COSMIC
COSN20220192 3896 COSMIC
COSN21528643 3903 COSMIC
COSN16715317 3994 COSMIC
COSN16952950 4053 COSMIC
COSN20100257 4056 COSMIC
COSN20100258 4057 COSMIC
COSN7644236 4058 COSMIC
COSN2046111 4152 COSMIC
COSN32063410 4272 COSMIC
COSN20100251 4690 COSMIC
COSN24662049 5059 COSMIC
COSN17509735 5189 COSMIC
COSN16922789 5314 COSMIC
COSN2046110 5625 COSMIC
COSN6844842 5925 COSMIC
COSN6844841 5955 COSMIC
COSN19439326 5967 COSMIC
rs7747 1521 GWAS
rs11946205 4056 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs978633716 1 dbSNP
rs377638185 3 dbSNP
rs1381205225 6 dbSNP
rs776108454 7 dbSNP
rs1488917665 12 dbSNP
rs771172305 15 dbSNP
rs1220312165 17 dbSNP
rs1334750789 22 dbSNP
rs913142402 24 dbSNP
rs1490877358 25 dbSNP
rs760122322 27 dbSNP
rs61048419 28 dbSNP
rs371259027 29 dbSNP
rs376889055 30 dbSNP
rs776102133 30 dbSNP
rs774114540 33 dbSNP
rs1166285161 40 dbSNP
rs1386865662 47 dbSNP
rs1424997581 62 dbSNP
rs1302285938 71 dbSNP
rs1348118613 77 dbSNP
rs1019325442 81 dbSNP
rs1289568222 82 dbSNP
rs1040931371 84 dbSNP
rs1226508947 105 dbSNP
rs939717650 105 dbSNP
rs1360639940 106 dbSNP
rs908185636 107 dbSNP
rs1319297882 108 dbSNP
rs983904896 113 dbSNP
rs1242223077 123 dbSNP
rs1485220028 126 dbSNP
rs1186291203 128 dbSNP
rs1244656408 129 dbSNP
rs1444860170 130 dbSNP
rs1162737981 161 dbSNP
rs776456313 167 dbSNP
rs1436510566 172 dbSNP
rs570896111 180 dbSNP
rs1373036237 191 dbSNP
rs747517375 194 dbSNP
rs34107713 201 dbSNP
rs953823278 203 dbSNP
rs1172496959 205 dbSNP
rs1029552516 211 dbSNP
rs931023726 212 dbSNP
rs1400884360 215 dbSNP
rs1409758627 217 dbSNP
rs926815000 218 dbSNP
rs980974654 219 dbSNP
rs879306141 220 dbSNP
rs970876823 225 dbSNP
rs1284108165 226 dbSNP
rs899363714 239 dbSNP
rs139631974 242 dbSNP
rs1486948818 245 dbSNP
rs1005124663 262 dbSNP
rs988371199 266 dbSNP
rs1461528370 274 dbSNP
rs1182545150 279 dbSNP
rs1317713320 280 dbSNP
rs1471002180 282 dbSNP
rs1286680115 288 dbSNP
rs1177726150 297 dbSNP
rs895785022 303 dbSNP
rs956746856 309 dbSNP
rs1057133988 311 dbSNP
rs560060945 316 dbSNP
rs1001999653 318 dbSNP
rs1349600793 320 dbSNP
rs1406895416 323 dbSNP
rs905958998 325 dbSNP
rs1332358353 336 dbSNP
rs4690108 336 dbSNP
rs947186737 337 dbSNP
rs1353513758 341 dbSNP
rs1000968129 344 dbSNP
rs889162016 349 dbSNP
rs1284670961 353 dbSNP
rs1178434265 358 dbSNP
rs1029033260 361 dbSNP
rs996670112 363 dbSNP
rs746819365 370 dbSNP
rs779898165 376 dbSNP
rs1040964075 380 dbSNP
rs1205046256 383 dbSNP
rs1156578658 385 dbSNP
rs772511957 390 dbSNP
rs1411620922 392 dbSNP
rs1166131925 393 dbSNP
rs1430074453 394 dbSNP
rs886785939 395 dbSNP
rs943944740 398 dbSNP
rs912193117 401 dbSNP
rs1416390796 402 dbSNP
rs1398987226 415 dbSNP
rs188337138 418 dbSNP
rs953872349 419 dbSNP
rs1243921183 422 dbSNP
rs1407329362 424 dbSNP
rs1284414772 425 dbSNP
rs1213836843 426 dbSNP
rs1345612855 429 dbSNP
rs919668018 435 dbSNP
rs1272570080 438 dbSNP
rs1273534531 447 dbSNP
rs879716190 457 dbSNP
rs963505681 472 dbSNP
rs542816123 474 dbSNP
rs1273681182 480 dbSNP
rs1332556597 482 dbSNP
rs926398259 485 dbSNP
rs980501615 486 dbSNP
rs1015051862 487 dbSNP
rs1005049416 489 dbSNP
rs1196898916 491 dbSNP
rs144763113 504 dbSNP
rs1363371302 507 dbSNP
rs1475876557 510 dbSNP
rs1167514454 511 dbSNP
rs1388714016 513 dbSNP
rs1426884524 518 dbSNP
rs563681812 528 dbSNP
rs1304118057 531 dbSNP
rs1036068823 536 dbSNP
rs1385568629 537 dbSNP
rs1321071135 538 dbSNP
rs1001532542 539 dbSNP
rs748970937 541 dbSNP
rs925312947 548 dbSNP
rs777254585 557 dbSNP
rs755763454 559 dbSNP
rs574677718 561 dbSNP
rs1429535040 567 dbSNP
rs953399350 567 dbSNP
rs1029064348 585 dbSNP
rs997539236 593 dbSNP
rs1292185917 602 dbSNP
rs965203498 609 dbSNP
rs1043146665 610 dbSNP
rs1019378098 614 dbSNP
rs1263981683 617 dbSNP
rs1447586321 621 dbSNP
rs1188183668 626 dbSNP
rs1246485243 627 dbSNP
rs1463391673 635 dbSNP
rs1446668263 637 dbSNP
rs543914223 640 dbSNP
rs1368235749 651 dbSNP
rs1011704171 653 dbSNP
rs891601909 655 dbSNP
rs1160760652 660 dbSNP
rs1408504240 664 dbSNP
rs1416326848 667 dbSNP
rs1004136165 668 dbSNP
rs1382352315 672 dbSNP
rs149404014 677 dbSNP
rs1362630308 683 dbSNP
rs1454222417 684 dbSNP
rs1048298243 686 dbSNP
rs995607519 695 dbSNP
rs904839992 699 dbSNP
rs537492648 702 dbSNP
rs745896907 703 dbSNP
rs754910280 705 dbSNP
rs932331806 706 dbSNP
rs1462865684 711 dbSNP
rs1215316191 715 dbSNP
rs1467025205 719 dbSNP
rs935512377 721 dbSNP
rs925562029 725 dbSNP
rs919619394 726 dbSNP
rs1422366927 727 dbSNP
rs778332341 728 dbSNP
rs1457143698 729 dbSNP
rs558146052 733 dbSNP
rs1157833840 742 dbSNP
rs545341922 743 dbSNP
rs184787807 745 dbSNP
rs1302997320 752 dbSNP
rs953528626 760 dbSNP
rs1309214020 763 dbSNP
rs921914491 769 dbSNP
rs1139638 784 dbSNP
rs63539261 785 dbSNP
rs199765553 786 dbSNP
rs370214594 786 dbSNP
rs374684023 786 dbSNP
rs879670384 786 dbSNP
rs567450883 790 dbSNP
rs1004486563 791 dbSNP
rs1204553445 795 dbSNP
rs192522012 800 dbSNP
rs556665923 801 dbSNP
rs1438265929 810 dbSNP
rs1392663272 816 dbSNP
rs1293332942 819 dbSNP
rs1197965480 826 dbSNP
rs1251655792 831 dbSNP
rs1027338756 835 dbSNP
rs960223750 836 dbSNP
rs1035929868 839 dbSNP
rs188905365 843 dbSNP
rs1409133977 849 dbSNP
rs1462908626 866 dbSNP
rs1356829220 867 dbSNP
rs995410461 869 dbSNP
rs570933063 872 dbSNP
rs1376783077 877 dbSNP
rs1002233778 891 dbSNP
rs970078131 894 dbSNP
rs138942234 895 dbSNP
rs1044716381 907 dbSNP
rs1395919053 912 dbSNP
rs1013346589 920 dbSNP
rs1306038891 922 dbSNP
rs896277938 924 dbSNP
rs765425253 929 dbSNP
rs1011628902 930 dbSNP
rs1300637214 933 dbSNP
rs1266354159 936 dbSNP
rs528793253 938 dbSNP
rs1177602547 943 dbSNP
rs1481557849 944 dbSNP
rs114449405 947 dbSNP
rs574248517 956 dbSNP
rs925457780 960 dbSNP
rs1203796024 963 dbSNP
rs1252287876 973 dbSNP
rs185326079 974 dbSNP
rs932207939 981 dbSNP
rs890992092 985 dbSNP
rs1049658452 990 dbSNP
rs932568979 991 dbSNP
rs898119583 995 dbSNP
rs1423830557 1024 dbSNP
rs1431118796 1037 dbSNP
rs1172040494 1040 dbSNP
rs1392381019 1044 dbSNP
rs1376146379 1045 dbSNP
rs370111848 1051 dbSNP
rs764203290 1073 dbSNP
rs567072402 1079 dbSNP
rs976093012 1079 dbSNP
rs1437078107 1080 dbSNP
rs1293035108 1095 dbSNP
rs939743640 1099 dbSNP
rs1384137966 1102 dbSNP
rs1297029521 1108 dbSNP
rs944701532 1108 dbSNP
rs908284877 1110 dbSNP
rs554716997 1113 dbSNP
rs753388642 1114 dbSNP
rs1175631791 1116 dbSNP
rs192905651 1126 dbSNP
rs928832669 1133 dbSNP
rs1439401481 1135 dbSNP
rs1026788796 1136 dbSNP
rs1248323663 1137 dbSNP
rs1159534908 1140 dbSNP
rs974402411 1145 dbSNP
rs969257505 1172 dbSNP
rs1386803425 1184 dbSNP
rs1405909727 1188 dbSNP
rs1163904454 1189 dbSNP
rs1348219401 1198 dbSNP
rs1248324457 1199 dbSNP
rs1321293144 1201 dbSNP
rs1023556820 1206 dbSNP
rs1433144798 1213 dbSNP
rs1013293221 1214 dbSNP
rs1273438315 1226 dbSNP
rs1380301233 1228 dbSNP
rs1228260103 1232 dbSNP
rs188090277 1233 dbSNP
rs1288283154 1237 dbSNP
rs896142017 1240 dbSNP
rs1268179498 1243 dbSNP
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rs1031192972 1256 dbSNP
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rs12747 1269 dbSNP
rs1472969611 1270 dbSNP
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rs1021603905 1279 dbSNP
rs1258955493 1282 dbSNP
rs1208154452 1283 dbSNP
rs990163319 1290 dbSNP
rs956054737 1295 dbSNP
rs1360127703 1296 dbSNP
rs932148736 1299 dbSNP
rs1031757628 1301 dbSNP
rs1008349364 1302 dbSNP
rs1040590218 1316 dbSNP
rs890927745 1317 dbSNP
rs1280369274 1319 dbSNP
rs1442638420 1325 dbSNP
rs1235500974 1343 dbSNP
rs1481588468 1350 dbSNP
rs1240198881 1356 dbSNP
rs1182766435 1363 dbSNP
rs1319031806 1364 dbSNP
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rs1286865698 1370 dbSNP
rs1028576346 1371 dbSNP
rs546914510 1372 dbSNP
rs1414094536 1379 dbSNP
rs772599868 1390 dbSNP
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rs117533033 1397 dbSNP
rs533434055 1401 dbSNP
rs1038277661 1404 dbSNP
rs564474386 1409 dbSNP
rs1276076027 1419 dbSNP
rs1345339362 1424 dbSNP
rs541395647 1425 dbSNP
rs1276284513 1426 dbSNP
rs1483876420 1430 dbSNP
rs1205806210 1440 dbSNP
rs1358967023 1457 dbSNP
rs919755044 1459 dbSNP
rs1201148387 1461 dbSNP
rs1247311960 1466 dbSNP
rs1413067009 1468 dbSNP
rs572394273 1476 dbSNP
rs1170968203 1483 dbSNP
rs553038131 1489 dbSNP
rs1470947336 1501 dbSNP
rs1168345775 1507 dbSNP
rs7747 1521 dbSNP
rs1324980780 1527 dbSNP
rs1331142151 1535 dbSNP
rs939108227 1541 dbSNP
rs150281545 1558 dbSNP
rs980695829 1559 dbSNP
rs143402499 1563 dbSNP
rs1228959730 1564 dbSNP
rs567911621 1568 dbSNP
rs990439682 1569 dbSNP
rs1211520172 1570 dbSNP
rs1158186232 1576 dbSNP
rs536752984 1577 dbSNP
rs1196825794 1583 dbSNP
rs1250207396 1584 dbSNP
rs999690583 1593 dbSNP
rs570970149 1594 dbSNP
rs1031684250 1603 dbSNP
rs1185137253 1606 dbSNP
rs879461725 1607 dbSNP
rs778181712 1618 dbSNP
rs1164278829 1634 dbSNP
rs1390844448 1635 dbSNP
rs1404309432 1636 dbSNP
rs1321011209 1646 dbSNP
rs1366970914 1647 dbSNP
rs11557907 1662 dbSNP
rs113322831 1663 dbSNP
rs1296632719 1665 dbSNP
rs556675735 1666 dbSNP
rs1484703874 1667 dbSNP
rs2760 1671 dbSNP
rs1028125821 1677 dbSNP
rs997069362 1679 dbSNP
rs1208174748 1680 dbSNP
rs962595800 1682 dbSNP
rs1016806162 1686 dbSNP
rs553406947 1687 dbSNP
rs760021544 1692 dbSNP
rs1246580039 1693 dbSNP
rs1040621722 1702 dbSNP
rs1004120602 1705 dbSNP
rs879611513 1709 dbSNP
rs1242695893 1723 dbSNP
rs1162235603 1733 dbSNP
rs1390145847 1733 dbSNP
rs1457442975 1733 dbSNP
rs1472080121 1733 dbSNP
rs944929225 1735 dbSNP
rs886743274 1737 dbSNP
rs137934897 1738 dbSNP
rs754431400 1743 dbSNP
rs565233339 1747 dbSNP
rs930638728 1748 dbSNP
rs1319087890 1750 dbSNP
rs1003271402 1756 dbSNP
rs1384094880 1759 dbSNP
rs1329860701 1793 dbSNP
rs577404985 1795 dbSNP
rs1266538143 1796 dbSNP
rs1044487240 1806 dbSNP
rs1201431332 1808 dbSNP
rs1255883714 1817 dbSNP
rs1441220121 1821 dbSNP
rs549449056 1828 dbSNP
rs916394583 1829 dbSNP
rs1472664516 1836 dbSNP
rs904954931 1852 dbSNP
rs182770575 1855 dbSNP
rs1396585372 1856 dbSNP
rs1361743971 1862 dbSNP
rs992091188 1863 dbSNP
rs570282651 1868 dbSNP
rs1467240187 1870 dbSNP
rs550348630 1886 dbSNP
rs1440646288 1901 dbSNP
rs1162617402 1902 dbSNP
rs1401185266 1910 dbSNP
rs1412863870 1913 dbSNP
rs1309713361 1915 dbSNP
rs1044850395 1920 dbSNP
rs1227936688 1925 dbSNP
rs1472432764 1925 dbSNP
rs1286500844 1938 dbSNP
rs923605835 1944 dbSNP
rs867329751 1955 dbSNP
rs533472774 1958 dbSNP
rs746980234 1966 dbSNP
rs1255807166 1976 dbSNP
rs191146988 1991 dbSNP
rs1343238066 1996 dbSNP
rs1207720677 2002 dbSNP
rs968104841 2004 dbSNP
rs1482995808 2011 dbSNP
rs114278305 2013 dbSNP
rs1434575690 2021 dbSNP
rs1247083012 2030 dbSNP
rs1208482639 2031 dbSNP
rs1432693584 2032 dbSNP
rs1469244121 2035 dbSNP
rs1170249893 2039 dbSNP
rs1275448570 2042 dbSNP
rs1409116067 2043 dbSNP
rs1296549449 2044 dbSNP
rs527711894 2052 dbSNP
rs562098721 2058 dbSNP
rs934903096 2060 dbSNP
rs542578819 2081 dbSNP
rs780006188 2098 dbSNP
rs987217257 2102 dbSNP
rs955427519 2103 dbSNP
rs921329672 2105 dbSNP
rs758307828 2126 dbSNP
rs975561585 2129 dbSNP
rs1203580469 2130 dbSNP
rs1249118525 2131 dbSNP
rs1489142228 2134 dbSNP
rs573552975 2135 dbSNP
rs1127250 2138 dbSNP
rs1266317389 2145 dbSNP
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rs1190330305 2151 dbSNP
rs751638077 2153 dbSNP
rs750241053 2155 dbSNP
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rs1168156350 2175 dbSNP
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rs1044519123 2187 dbSNP
rs1321371111 2189 dbSNP
rs1292980497 2202 dbSNP
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rs563152250 2208 dbSNP
rs543254931 2225 dbSNP
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rs1264328217 2237 dbSNP
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rs978394899 2284 dbSNP
rs967757310 2286 dbSNP
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rs773364823 2361 dbSNP
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rs1181172120 2382 dbSNP
rs1010662099 2390 dbSNP
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rs1411199964 2441 dbSNP
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rs4371564 2677 dbSNP
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rs1482372032 2684 dbSNP
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rs1390353083 2888 dbSNP
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rs747774025 2996 dbSNP
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rs183078579 3214 dbSNP
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rs202076062 3312 dbSNP
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rs906604326 3986 dbSNP
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rs947908133 4027 dbSNP
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rs1177954322 4096 dbSNP
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rs1018311635 4119 dbSNP
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rs781724360 4345 dbSNP
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rs564126587 4393 dbSNP
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rs199645652 4703 dbSNP
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rs397702828 4703 dbSNP
rs1225308966 4720 dbSNP
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rs751970477 4841 dbSNP
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rs1218737676 4872 dbSNP
rs1355657610 4880 dbSNP
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rs577426061 4883 dbSNP
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rs1205422681 4909 dbSNP
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rs1171520916 4954 dbSNP
rs553032678 4956 dbSNP
rs987297132 4972 dbSNP
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rs934050580 4979 dbSNP
rs991215656 4982 dbSNP
rs959384158 4986 dbSNP
rs1032425008 4991 dbSNP
rs1000986784 4992 dbSNP
rs1309354306 5001 dbSNP
rs918664622 5003 dbSNP
rs1327604758 5006 dbSNP
rs1371649624 5007 dbSNP
rs768353631 5011 dbSNP
rs1021211703 5016 dbSNP
rs1273173106 5019 dbSNP
rs971956541 5022 dbSNP
rs997420852 5029 dbSNP
rs1257740758 5031 dbSNP
rs962170920 5040 dbSNP
rs1215955919 5044 dbSNP
rs901743155 5045 dbSNP
rs866159449 5050 dbSNP
rs760314383 5070 dbSNP
rs1274125100 5078 dbSNP
rs1389223997 5082 dbSNP
rs1451560522 5083 dbSNP
rs774986955 5085 dbSNP
rs943033809 5086 dbSNP
rs1193743383 5087 dbSNP
rs537623408 5087 dbSNP
rs750567886 5089 dbSNP
rs887478523 5096 dbSNP
rs1033984225 5097 dbSNP
rs771554359 5108 dbSNP
rs1048764793 5118 dbSNP
rs1404524095 5131 dbSNP
rs1321545073 5138 dbSNP
rs1328124047 5140 dbSNP
rs971212263 5142 dbSNP
rs1020446099 5157 dbSNP
rs1338715124 5168 dbSNP
rs536487129 5174 dbSNP
rs535146201 5176 dbSNP
rs1356141643 5183 dbSNP
rs929059220 5184 dbSNP
rs918738795 5189 dbSNP
rs1208426741 5197 dbSNP
rs893288701 5198 dbSNP
rs1448027217 5207 dbSNP
rs1482189231 5214 dbSNP
rs1216714112 5216 dbSNP
rs192983822 5223 dbSNP
rs1476647143 5224 dbSNP
rs1189685202 5226 dbSNP
rs1007061249 5229 dbSNP
rs1346792095 5232 dbSNP
rs949608471 5233 dbSNP
rs1232391393 5237 dbSNP
rs1401148905 5238 dbSNP
rs1351074609 5251 dbSNP
rs918145447 5252 dbSNP
rs889785656 5254 dbSNP
rs1051142228 5263 dbSNP
rs1479298879 5268 dbSNP
rs775231972 5272 dbSNP
rs933977274 5273 dbSNP
rs1340083261 5275 dbSNP
rs534452397 5276 dbSNP
rs1243091009 5284 dbSNP
rs1281573915 5289 dbSNP
rs145084000 5299 dbSNP
rs1239998470 5314 dbSNP
rs1284472294 5317 dbSNP
rs959355047 5336 dbSNP
rs555082739 5338 dbSNP
rs918706063 5344 dbSNP
rs149966906 5346 dbSNP
rs979475122 5363 dbSNP
rs1369557743 5386 dbSNP
rs1334332376 5393 dbSNP
rs966804192 5396 dbSNP
rs1185147241 5398 dbSNP
rs1365282934 5411 dbSNP
rs1021066374 5419 dbSNP
rs997738764 5423 dbSNP
rs568935269 5425 dbSNP
rs745816668 5426 dbSNP
rs1436728351 5428 dbSNP
rs1303446569 5430 dbSNP
rs778870337 5440 dbSNP
rs887404788 5448 dbSNP
rs770746675 5451 dbSNP
rs993176887 5461 dbSNP
rs1480382727 5469 dbSNP
rs897558551 5485 dbSNP
rs771721344 5487 dbSNP
rs1270757955 5491 dbSNP
rs759393642 5494 dbSNP
rs552104041 5497 dbSNP
rs1471611980 5498 dbSNP
rs918126525 5508 dbSNP
rs1055354419 5517 dbSNP
rs938249647 5518 dbSNP
rs749147651 5520 dbSNP
rs979442494 5521 dbSNP
rs927201999 5524 dbSNP
rs533063623 5525 dbSNP
rs777700684 5527 dbSNP
rs1343890672 5531 dbSNP
rs1198321263 5540 dbSNP
rs1252193100 5544 dbSNP
rs114779758 5547 dbSNP
rs976224184 5548 dbSNP
rs966236475 5553 dbSNP
rs1010378528 5557 dbSNP
rs957548180 5565 dbSNP
rs1033099871 5566 dbSNP
rs1176927249 5584 dbSNP
rs1377093523 5585 dbSNP
rs1464592915 5593 dbSNP
rs4331719 5602 dbSNP
rs752906051 5605 dbSNP
rs1329653657 5611 dbSNP
rs1373833673 5613 dbSNP
rs1442229019 5614 dbSNP
rs951975473 5625 dbSNP
rs1330045423 5626 dbSNP
rs1230435565 5628 dbSNP
rs1252763061 5630 dbSNP
rs1027558174 5645 dbSNP
rs1318102940 5650 dbSNP
rs993106435 5653 dbSNP
rs527507438 5655 dbSNP
rs897529051 5662 dbSNP
rs1045882360 5668 dbSNP
rs998218766 5670 dbSNP
rs781150419 5672 dbSNP
rs755041415 5677 dbSNP
rs113909336 5679 dbSNP
rs561715924 5681 dbSNP
rs1431576671 5682 dbSNP
rs1014014618 5690 dbSNP
rs896610496 5698 dbSNP
rs1424617697 5700 dbSNP
rs865813635 5701 dbSNP
rs1397076838 5704 dbSNP
rs938216868 5707 dbSNP
rs1469668527 5712 dbSNP
rs1213686651 5715 dbSNP
rs1293528218 5717 dbSNP
rs904085494 5718 dbSNP
rs1389847773 5719 dbSNP
rs1037130027 5731 dbSNP
rs1279469183 5735 dbSNP
rs1340781300 5750 dbSNP
rs1217586628 5755 dbSNP
rs1275890964 5758 dbSNP
rs541962244 5761 dbSNP
rs1222020874 5768 dbSNP
rs1407298408 5770 dbSNP
rs1487429366 5771 dbSNP
rs1206975965 5772 dbSNP
rs1263946767 5776 dbSNP
rs1477629916 5781 dbSNP
rs1182562355 5782 dbSNP
rs945360414 5794 dbSNP
rs1420289535 5795 dbSNP
rs913908915 5806 dbSNP
rs1048965881 5809 dbSNP
rs1164449388 5815 dbSNP
rs1348652284 5832 dbSNP
rs1455772475 5834 dbSNP
rs1299526008 5840 dbSNP
rs1360666375 5842 dbSNP
rs1236006475 5844 dbSNP
rs937152427 5845 dbSNP
rs1228682679 5846 dbSNP
rs1311659284 5847 dbSNP
rs531406678 5848 dbSNP
rs1242168364 5849 dbSNP
rs1488026419 5849 dbSNP
rs1214524214 5850 dbSNP
rs981748452 5851 dbSNP
rs949766377 5853 dbSNP
rs912862336 5855 dbSNP
rs1159832072 5856 dbSNP
rs1412017868 5856 dbSNP
rs1421231369 5856 dbSNP
rs1328438044 5870 dbSNP
rs1344096658 5876 dbSNP
rs562477508 5880 dbSNP
rs1418621966 5881 dbSNP
rs944827307 5888 dbSNP
rs1360540466 5890 dbSNP
rs1229592175 5891 dbSNP
rs910356673 5892 dbSNP
rs557691514 5895 dbSNP
rs1448679415 5906 dbSNP
rs140014122 5907 dbSNP
rs576761044 5913 dbSNP
rs954334146 5926 dbSNP
rs1366319363 5927 dbSNP
rs1029931395 5931 dbSNP
rs1209745236 5937 dbSNP
rs1235917995 5938 dbSNP
rs1481865219 5941 dbSNP
rs998813727 5944 dbSNP
rs972040270 5948 dbSNP
rs770910264 5953 dbSNP
rs1023978698 5960 dbSNP
rs1426598177 5961 dbSNP
rs1414519153 5976 dbSNP
rs1345171752 5980 dbSNP
rs1015972842 5983 dbSNP
rs1165559488 5984 dbSNP
rs190274687 5988 dbSNP
rs537713506 5998 dbSNP
rs1163110995 6004 dbSNP
rs1055203883 6007 dbSNP
rs571682315 6008 dbSNP
rs1249626338 6010 dbSNP
rs1186493686 6012 dbSNP
rs1276524811 6023 dbSNP
rs1485493702 6031 dbSNP
rs1247284922 6034 dbSNP
rs905669568 6035 dbSNP
rs1034130539 6038 dbSNP
rs1276848812 6058 dbSNP
rs1002368307 6059 dbSNP
rs1199663468 6067 dbSNP
rs1223676087 6069 dbSNP
rs1319341982 6073 dbSNP
rs1288553015 6083 dbSNP
rs1228633737 6084 dbSNP
rs540557527 6094 dbSNP
rs1043966213 6095 dbSNP
rs926541281 6096 dbSNP
rs539549940 6097 dbSNP
rs949975589 6097 dbSNP
rs4690124 6099 dbSNP
rs1422628366 6100 dbSNP
rs531103553 6101 dbSNP
rs1286642812 6102 dbSNP
rs765520573 6102 dbSNP
rs944732466 6107 dbSNP
rs988470228 6109 dbSNP
rs554717553 6110 dbSNP
rs910618970 6120 dbSNP
rs1399339732 6124 dbSNP
rs935655728 6130 dbSNP
rs184558830 6132 dbSNP
rs13134108 6146 dbSNP
rs985149514 6150 dbSNP
rs146536271 6151 dbSNP
rs1361867902 6152 dbSNP
rs1435860704 6157 dbSNP
rs191767154 6160 dbSNP
rs1439241503 6162 dbSNP
rs954248140 6170 dbSNP
rs558618750 6175 dbSNP
rs977032738 6184 dbSNP
rs1316485816 6188 dbSNP
rs1211997708 6193 dbSNP
rs1291295454 6195 dbSNP
rs528464445 6202 dbSNP
rs1220228116 6209 dbSNP
rs566732672 6235 dbSNP
rs1488973057 6239 dbSNP
rs1193990601 6244 dbSNP
rs1422469146 6245 dbSNP
rs920436698 6247 dbSNP
rs1392318083 6256 dbSNP
rs1414448598 6268 dbSNP
rs547704828 6276 dbSNP
rs1427632466 6277 dbSNP
rs1362588508 6278 dbSNP
rs1425624892 6283 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000403729.2 | 3UTR | UCAAGAUCUACUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
126 hsa-miR-4672 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060585 CCND1 cyclin D1 2 2
MIRT063968 ZNF678 zinc finger protein 678 2 2
MIRT078062 PCTP phosphatidylcholine transfer protein 2 2
MIRT084370 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT095611 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT096511 BRIX1 BRX1, biogenesis of ribosomes 2 4
MIRT121793 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT129470 CHEK1 checkpoint kinase 1 2 4
MIRT149009 PKN2 protein kinase N2 2 2
MIRT169592 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT177382 WAC WW domain containing adaptor with coiled-coil 2 4
MIRT214659 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT322680 BAG4 BCL2 associated athanogene 4 2 4
MIRT332490 CD81 CD81 molecule 2 6
MIRT338986 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT353814 PCBP1 poly(rC) binding protein 1 2 2
MIRT449368 ANTXR2 anthrax toxin receptor 2 2 2
MIRT459867 KIAA1191 KIAA1191 2 2
MIRT466272 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT467049 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT469925 PTPRJ protein tyrosine phosphatase, receptor type J 2 6
MIRT470361 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT471076 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472472 NAP1L1 nucleosome assembly protein 1 like 1 2 4
MIRT478137 DHX33 DEAH-box helicase 33 2 2
MIRT479414 CDKN1B cyclin dependent kinase inhibitor 1B 2 4
MIRT496523 ID2 inhibitor of DNA binding 2, HLH protein 2 2
MIRT510371 ZNF703 zinc finger protein 703 2 6
MIRT512861 TESK2 testis-specific kinase 2 2 2
MIRT512974 PPP1R14C protein phosphatase 1 regulatory inhibitor subunit 14C 2 4
MIRT513313 ASB6 ankyrin repeat and SOCS box containing 6 2 4
MIRT521882 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 4
MIRT522184 NR2C2 nuclear receptor subfamily 2 group C member 2 2 4
MIRT528381 TRAF3IP1 TRAF3 interacting protein 1 2 2
MIRT532412 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT533027 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT533438 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533919 TATDN2 TatD DNase domain containing 2 2 2
MIRT537568 ESYT2 extended synaptotagmin 2 2 2
MIRT538955 BMP2K BMP2 inducible kinase 2 2
MIRT539042 ATXN1L ataxin 1 like 2 4
MIRT539626 CD19 CD19 molecule 2 8
MIRT545720 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT546013 WDR26 WD repeat domain 26 2 4
MIRT549703 RBM23 RNA binding motif protein 23 2 4
MIRT551162 UBTF upstream binding transcription factor, RNA polymerase I 2 4
MIRT552078 MESDC2 mesoderm development LRP chaperone 2 4
MIRT552530 ZIC5 Zic family member 5 2 2
MIRT552670 YY1 YY1 transcription factor 2 4
MIRT554225 SLC24A2 solute carrier family 24 member 2 2 2
MIRT554356 SFXN5 sideroflexin 5 2 4
MIRT555279 PPTC7 PTC7 protein phosphatase homolog 2 4
MIRT555642 PHF13 PHD finger protein 13 2 2
MIRT558365 DIDO1 death inducer-obliterator 1 2 4
MIRT558630 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT559238 BEND4 BEN domain containing 4 2 2
MIRT559556 ARF6 ADP ribosylation factor 6 2 2
MIRT561686 RAB1A RAB1A, member RAS oncogene family 2 2
MIRT562668 ANKRD40 ankyrin repeat domain 40 2 2
MIRT565689 SESN3 sestrin 3 2 2
MIRT566238 PTBP3 polypyrimidine tract binding protein 3 2 2
MIRT567699 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT573858 C9orf78 chromosome 9 open reading frame 78 2 2
MIRT574156 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT575869 Kif5c kinesin family member 5C 2 3
MIRT576180 Muc15 mucin 15 2 5
MIRT606886 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 6
MIRT606908 ZBTB20 zinc finger and BTB domain containing 20 2 4
MIRT606914 MUC15 mucin 15, cell surface associated 2 7
MIRT607250 FAM216B family with sequence similarity 216 member B 2 4
MIRT607562 KIF5C kinesin family member 5C 2 3
MIRT609075 SMIM15 small integral membrane protein 15 2 6
MIRT609160 ZNF415 zinc finger protein 415 2 4
MIRT609360 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT609799 ZDHHC17 zinc finger DHHC-type containing 17 2 2
MIRT610368 GRIPAP1 GRIP1 associated protein 1 2 2
MIRT611341 KIAA2018 upstream transcription factor family member 3 2 4
MIRT611732 PRSS23 protease, serine 23 2 4
MIRT611826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT611906 NNT nicotinamide nucleotide transhydrogenase 2 2
MIRT612377 TFCP2 transcription factor CP2 2 4
MIRT613482 LYRM7 LYR motif containing 7 2 2
MIRT613641 DUSP18 dual specificity phosphatase 18 2 4
MIRT613822 LANCL3 LanC like 3 2 4
MIRT613863 CBY3 chibby family member 3 2 4
MIRT613871 TMEM51 transmembrane protein 51 2 2
MIRT614688 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT615044 DCP2 decapping mRNA 2 2 2
MIRT616872 ARPC1B actin related protein 2/3 complex subunit 1B 2 4
MIRT617012 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT618524 CCDC174 coiled-coil domain containing 174 2 2
MIRT621827 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT622108 SPRY4 sprouty RTK signaling antagonist 4 2 6
MIRT623111 NFATC2 nuclear factor of activated T-cells 2 2 2
MIRT626102 GNAI1 G protein subunit alpha i1 2 4
MIRT626416 ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 2 2
MIRT627656 RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component 2 2
MIRT628333 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2 2
MIRT629334 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT630426 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT630707 GDNF glial cell derived neurotrophic factor 2 2
MIRT632568 POLQ DNA polymerase theta 2 2
MIRT632798 KIAA2022 neurite extension and migration factor 2 2
MIRT634125 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT634299 SP1 Sp1 transcription factor 2 2
MIRT634406 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT636827 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT638270 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT643060 CCDC149 coiled-coil domain containing 149 2 2
MIRT646160 SLC22A1 solute carrier family 22 member 1 2 2
MIRT648243 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 2 2
MIRT663402 SYT17 synaptotagmin 17 2 6
MIRT666042 STON2 stonin 2 2 2
MIRT670698 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT672337 TMEM79 transmembrane protein 79 2 4
MIRT672628 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT685229 F2RL1 F2R like trypsin receptor 1 2 2
MIRT693225 KIAA0907 KIAA0907 2 4
MIRT696142 RAB11FIP3 RAB11 family interacting protein 3 2 2
MIRT697908 TXNRD1 thioredoxin reductase 1 2 2
MIRT705315 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT712264 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT714080 ZNF532 zinc finger protein 532 2 2
MIRT715104 SORBS3 sorbin and SH3 domain containing 3 2 2
MIRT722237 RBM41 RNA binding motif protein 41 2 2
MIRT725113 SYNRG synergin gamma 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4672 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4672 Paclitaxel 36314 NSC125973 approved sensitive High Endometrial Serous Carcinoma cell line (USPC1)
hsa-miR-4672 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-mir-4672 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-4672 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4672 Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4672 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (HCT116)
hsa-miR-4672 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4672 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4672 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4672 Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-4672 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-4672 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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