miRTarBase - #MIRT449414


—
pre-miRNA Information
pre-miRNA hsa-mir-7161   
Genomic Coordinates chr6: 158609707 - 158609790
Description Homo sapiens miR-7161 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7161-5p
Sequence 1| UAAAGACUGUAGAGGCAACUGGU |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1198027002 1 dbSNP
rs530077902 10 dbSNP
rs1446817450 13 dbSNP
rs774892048 14 dbSNP
rs1438482648 16 dbSNP
rs1167166990 19 dbSNP
rs760372681 19 dbSNP
Putative Targets

Gene Information
Gene Symbol TRIM5   
Synonyms RNF88, TRIM5alpha
Description tripartite motif containing 5
Transcript NM_033092   
Other Transcripts NM_033034 , NM_033093   
Expression
Putative miRNA Targets on TRIM5
3'UTR of TRIM5
(miRNA target sites are highlighted)		 
>TRIM5|NM_033092|3'UTR
   1 CTTCTAAACAAGGTTCCTCCCAGTTTTCTCTCAAGTCTTTATCAAGATTTCTCTCATATCACAAATAAAGTTACATTATA
  81 TCCCTTAGCTGACCTGTTAATTTTTCTACAGTTGATGTGACAGTGGCTCCAAACAACATTTCATGTGCTGTCATTTCTGA
 161 AGATAAGAGACAAGTGAGCTCTCCGAAACCACAGATAATATATGGGGCACGAGGGACAAGATACCAGACATTTGTGAATT
 241 TCAATTATTGTACTGGCATCCTGGGCTCTCAAAGTATCACATCAGGGAAACATTACTGGGAGGTAGACGTGTCCAAGAAA
 321 ACTGCTTGGATCCTGGGGGTATGTGCTGGCTTCCAACCTGATGCAATGTGTAATATTGAAAAAAATGAAAATTATCAACC
 401 TAAATACGGCTACTGGGTTATAGGGTTAGAGGAAGGAGTTAAATGTAGTGCTTTCCAGGATAGTTCCTTCCATACTCCTT
 481 CTGTTCCTTTCATTGTGCCCCTCTCTGTGATTATTTGTCCTGATCGTGTTGGAGTTTTCCTAGACTATGAGGCTTGCACT
 561 GTCTCATTCTTCAATATCACAAACCATGGATTTCTCATCTATAAGTTTTCTCACTGTTCTTTTTCTCAGCCTGTATTTCC
 641 ATATTTAAATCCTAGAAAATGTGGAGTCCCCATGACTCTGTGCTCACCAAGCTCTTGAACCTTCTTACACACTCAGCCCC
 721 TTCTGTACAGCACCTCTTGTCCAGGTGCATCTCATACACCTGAACTCATTTGCATCATTTTAACCATCTTTTCCTTGCTG
 801 TCTCCCTTCTTTCTATTTGAACGTCCTTCACTCATCAGTAAAATGTAATAATTGCCTTGTGCCATATTGTCCCCAATATT
 881 TTATTGACATTTGATAGCAATTTTTTTCATCATTTTCCGTACTCCTAAGGAAAACTGACCTATACCTCATAAAATGAGAC
 961 CGCTATTTAGGTATTACTTCTGCCAGATATTTATCACCCAATTGCCTCTGACACTGACTAAGAAGATGAAGAAAAGCTTT
1041 TCAACAGCCTTTCTATATCATCGTGTGATAATTGTTCACCAATGAATGAGTCCTTAGCCCTGTGTCAGTTTACCCTCGAT
1121 GCCCTTATTTGTGAGTTAAAGAGAAAATATCATAAATGGTATACTCTTAAGTATAGAGGTTTTGTATCTAGAGGATCTCA
1201 GTTCAACTCCTGTCTCTCCATATACCAGCAGTGTAACTGTGAATAACATACTTAAATGGCTGTGCTTATTTCCTTTTCTT
1281 TTCTTTTTTCTTTTTTTTTTTTTTTGAGATGAAGTTTTGCTCTTGTTCCCCAGGCTGGAGTGCAATGGCACGATCTCGGT
1361 TCACTGCAACCTCCACCTCTCAGATTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACC
1441 ACCACCCCTGGCTAAATTTGTATTTTCAGTAGAGACGGGGTTTCCCCATGTTGGTTAGGCTCGTCTAGAACCTCTGACCT
1521 CAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACGGCGCCCAGCCTGTGCTTATTTTC
1601 TTAAAATAATTTTTGTATTAAAAACTTCACATTAAATAAGTGCTAATGTTTTATTGCATAGTAGGGTGACTAGAGTTAAC
1681 AATAACCTATTGCATATATTTTGAAATAGCTAGAAGAGAGGATTTTGAAAGTTCTCAACACAAAGAAATGACACATATTT
1761 GAGGTGATGGATATGCTAATTACCCTGGTTCGGTTATTACGCAATGTATACATGTATCAAAACATCACACTGTACCACAT
1841 AAATATGTATATTTATTATTTGTCAATTAAAAGCAAAATAAAACAAAAAACCTTCATCTAATACTTTGGATCATTGTGAA
1921 AAAATAAATTCCTGAAGTATAAAGCATCTATCTAAGTGTCTTGATCTAATAAGTACTTGTTCTACAAATTATTGAAAAAC
2001 ATAAACTCTGTTAATGTCTCATGGAACAGGTTGTGCCTTCAGGGAAACTAGGATTGGATTTACTAAATTCTCATTTTTTA
2081 GATCTCAGATACTACTGTCAAAATGACTTCAATTCTGCCTTCTATATATAATACACACATATATTTAGGATTTTATTGTA
2161 ATTCTAGTGTTGCTACATATTAGTCTTTATCAAACAAACTGAATTATGTGGGAATCAGTTTATTAATTGTAAAAAATAAT
2241 TATAATAAAATTAGCTGATGTAGTTTTTTAAAAGTTAAACGAGTTTTTTGAATAGCTTCACTCATTTCTAGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugGUCAACGGAGAUGUCAGAAAu 5'
            ||||| :||||  ||||||| 
Target 5' ccCAGTTTTCTCTCAAGTCTTTa 3'
 19 - 41 177.00 -23.50
2 
miRNA  3' ugguCAACGGAG-AU-GUCAGAAAu 5'
              |||||: | || :||||||| 
Target 5' tagtGTTGCTACATATTAGTCTTTa 3'
 2165 - 2189 163.00 -13.90
3 
miRNA  3' uggUCAACGGAGAUGUCAGAAAu 5'
             | | ||:  |::|||:||| 
Target 5' aaaATTAGCTGATGTAGTTTTTt 3'
 2247 - 2269 140.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
768421 652 ClinVar
COSN31577103 8 COSMIC
COSN30158016 28 COSMIC
COSN4891586 32 COSMIC
COSN31560097 46 COSMIC
COSN1134937 72 COSMIC
COSN23021032 79 COSMIC
COSN30486998 82 COSMIC
COSN13331544 84 COSMIC
COSM4749206 134 COSMIC
COSM9709433 142 COSMIC
COSM9461300 145 COSMIC
COSM9337056 154 COSMIC
COSM3791586 178 COSMIC
COSM5093152 181 COSMIC
COSM928512 181 COSMIC
COSM5838814 183 COSMIC
COSM6808359 184 COSMIC
COSM4736131 185 COSMIC
COSM5999437 189 COSMIC
COSM303451 210 COSMIC
COSM5953388 217 COSMIC
COSM7431709 223 COSMIC
COSM1354714 240 COSMIC
COSM4033984 243 COSMIC
COSM9361460 243 COSMIC
COSM429263 268 COSMIC
COSM4457617 268 COSMIC
COSM3449611 278 COSMIC
COSM688447 284 COSMIC
COSM928510 308 COSMIC
COSM5605183 309 COSMIC
COSM8176854 309 COSMIC
COSM3782643 328 COSMIC
COSM4736128 333 COSMIC
COSM8485313 335 COSMIC
COSM7443892 346 COSMIC
COSM928508 349 COSMIC
COSM1746334 360 COSMIC
COSM1354712 378 COSMIC
COSM8553034 379 COSMIC
COSM8921220 381 COSMIC
COSM928506 384 COSMIC
COSM9909503 387 COSMIC
COSM6025112 393 COSMIC
COSM5970211 400 COSMIC
COSM9054908 400 COSMIC
COSM4196956 407 COSMIC
COSM7818350 436 COSMIC
COSM3748528 437 COSMIC
COSM4033982 437 COSMIC
COSM5838811 438 COSMIC
COSM9461695 455 COSMIC
COSM4196954 470 COSMIC
COSM4986376 471 COSMIC
COSM7164482 471 COSMIC
COSM7997221 477 COSMIC
COSM1298194 481 COSMIC
COSM9920857 487 COSMIC
COSM1354710 488 COSMIC
COSM3368429 500 COSMIC
COSM8847718 505 COSMIC
COSM3449609 509 COSMIC
COSM5361025 515 COSMIC
COSM6237753 519 COSMIC
COSM1703473 525 COSMIC
COSM8706609 539 COSMIC
COSM5670991 555 COSMIC
COSM1354708 556 COSMIC
COSM429261 572 COSMIC
COSM8763302 578 COSMIC
COSM1230350 604 COSMIC
COSM4626842 613 COSMIC
COSM3731615 624 COSMIC
COSM4961166 630 COSMIC
COSM5593582 631 COSMIC
COSM5909184 639 COSMIC
COSM9669944 651 COSMIC
COSM4196950 668 COSMIC
COSM9281389 671 COSMIC
COSM1188146 691 COSMIC
COSM688449 697 COSMIC
COSN28189313 713 COSMIC
COSN30461560 734 COSMIC
COSN30147807 741 COSMIC
COSN30137946 744 COSMIC
COSN30448110 744 COSMIC
COSN27000019 747 COSMIC
COSN31549678 777 COSMIC
COSN13331542 788 COSMIC
COSN10089573 794 COSMIC
COSN19384691 919 COSMIC
COSN20092308 1000 COSMIC
COSN20061419 1207 COSMIC
COSN28838637 1227 COSMIC
COSM6217652 1399 COSMIC
COSN18879564 1429 COSMIC
COSN5262339 1477 COSMIC
COSN5307389 1487 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1050755757 4 dbSNP
rs758357932 12 dbSNP
rs750386893 13 dbSNP
rs1316190839 18 dbSNP
rs1220543443 19 dbSNP
rs1259052866 20 dbSNP
rs60053655 30 dbSNP
rs1485925338 31 dbSNP
rs1256725016 34 dbSNP
rs1219926297 35 dbSNP
rs1304918660 40 dbSNP
rs200633445 42 dbSNP
rs753702516 45 dbSNP
rs763732908 46 dbSNP
rs760390429 50 dbSNP
rs940380409 59 dbSNP
rs752244309 61 dbSNP
rs908979031 65 dbSNP
rs1170757694 66 dbSNP
rs1416445762 70 dbSNP
rs557544039 73 dbSNP
rs759009263 74 dbSNP
rs770481571 75 dbSNP
rs539181397 79 dbSNP
rs1413269257 82 dbSNP
rs777138514 99 dbSNP
rs1350272444 108 dbSNP
rs369398827 109 dbSNP
rs747275145 121 dbSNP
rs775530114 122 dbSNP
rs1338700202 123 dbSNP
rs1166385497 126 dbSNP
rs772302576 129 dbSNP
rs1220636363 130 dbSNP
rs1417018210 131 dbSNP
rs746009405 139 dbSNP
rs778963530 141 dbSNP
rs1278925253 143 dbSNP
rs757193703 144 dbSNP
rs1195066276 145 dbSNP
rs952259117 147 dbSNP
rs1480395440 148 dbSNP
rs749169049 161 dbSNP
rs574858103 162 dbSNP
rs755827333 163 dbSNP
rs1292798130 171 dbSNP
rs138877546 174 dbSNP
rs1338108071 178 dbSNP
rs749810281 180 dbSNP
rs754663708 184 dbSNP
rs751182573 185 dbSNP
rs765919035 190 dbSNP
rs1461689319 199 dbSNP
rs762423093 201 dbSNP
rs1162256908 207 dbSNP
rs1236415952 208 dbSNP
rs777226381 209 dbSNP
rs376400046 210 dbSNP
rs145938172 211 dbSNP
rs772253128 212 dbSNP
rs746025761 214 dbSNP
rs758314490 216 dbSNP
rs774431118 217 dbSNP
rs142472523 219 dbSNP
rs777611766 221 dbSNP
rs756056446 223 dbSNP
rs1460611323 227 dbSNP
rs747950258 230 dbSNP
rs781036391 231 dbSNP
rs1334332133 233 dbSNP
rs1397128947 242 dbSNP
rs1306142979 243 dbSNP
rs754680141 244 dbSNP
rs556560739 250 dbSNP
rs1323234902 256 dbSNP
rs766006834 260 dbSNP
rs902650407 262 dbSNP
rs372066955 263 dbSNP
rs1157947635 265 dbSNP
rs745758426 267 dbSNP
rs1396628294 268 dbSNP
rs375450398 270 dbSNP
rs61744034 272 dbSNP
rs1252617958 276 dbSNP
rs981428063 285 dbSNP
rs1196796916 287 dbSNP
rs775724276 291 dbSNP
rs1439525315 292 dbSNP
rs1239982854 293 dbSNP
rs779781685 295 dbSNP
rs756045662 296 dbSNP
rs767815516 302 dbSNP
rs746486829 303 dbSNP
rs774516819 304 dbSNP
rs1346616503 307 dbSNP
rs771111675 308 dbSNP
rs971037423 309 dbSNP
rs763071709 313 dbSNP
rs773329708 316 dbSNP
rs201187247 324 dbSNP
rs1289322398 326 dbSNP
rs138373549 327 dbSNP
rs1237498323 330 dbSNP
rs780862201 332 dbSNP
rs768521085 335 dbSNP
rs1173962210 336 dbSNP
rs370665003 338 dbSNP
rs1394654131 340 dbSNP
rs568025259 341 dbSNP
rs1476537699 342 dbSNP
rs553273809 343 dbSNP
rs749955642 347 dbSNP
rs756596899 349 dbSNP
rs35852130 350 dbSNP
rs753203242 353 dbSNP
rs1381965658 355 dbSNP
rs767901597 362 dbSNP
rs1055380096 366 dbSNP
rs1346586683 367 dbSNP
rs759934279 373 dbSNP
rs1301839376 374 dbSNP
rs751901283 376 dbSNP
rs766648036 381 dbSNP
rs1269064018 385 dbSNP
rs1216260820 386 dbSNP
rs763231561 388 dbSNP
rs1313434668 390 dbSNP
rs956760476 394 dbSNP
rs368129935 397 dbSNP
rs1032376798 399 dbSNP
rs1330727409 402 dbSNP
rs201703981 403 dbSNP
rs761678590 404 dbSNP
rs56397848 407 dbSNP
rs768680263 408 dbSNP
rs1420586021 409 dbSNP
rs570656916 410 dbSNP
rs771859252 413 dbSNP
rs868124836 414 dbSNP
rs778312019 415 dbSNP
rs777548826 420 dbSNP
rs907689247 431 dbSNP
rs1273943772 432 dbSNP
rs1207134913 437 dbSNP
rs1342459183 438 dbSNP
rs1437989204 440 dbSNP
rs1201755451 441 dbSNP
rs1278753149 444 dbSNP
rs756754725 449 dbSNP
rs1377494535 452 dbSNP
rs1196156777 455 dbSNP
rs753256194 457 dbSNP
rs781700358 462 dbSNP
rs755466873 463 dbSNP
rs751989109 466 dbSNP
rs750298966 468 dbSNP
rs766662383 469 dbSNP
rs867858483 469 dbSNP
rs200373739 470 dbSNP
rs28381981 471 dbSNP
rs370992292 472 dbSNP
rs1396745794 473 dbSNP
rs1029046017 476 dbSNP
rs766682949 477 dbSNP
rs201187556 483 dbSNP
rs55825090 484 dbSNP
rs775442429 486 dbSNP
rs887636705 487 dbSNP
rs374446720 492 dbSNP
rs745541073 494 dbSNP
rs1048824466 496 dbSNP
rs1259150496 498 dbSNP
rs199987954 499 dbSNP
rs774093215 500 dbSNP
rs770468397 501 dbSNP
rs1273258319 502 dbSNP
rs748889321 503 dbSNP
rs1211203266 504 dbSNP
rs533415419 506 dbSNP
rs777262222 513 dbSNP
rs750970131 517 dbSNP
rs1224080666 523 dbSNP
rs148933048 524 dbSNP
rs371395081 525 dbSNP
rs758747919 526 dbSNP
rs372681335 529 dbSNP
rs1326592760 530 dbSNP
rs895326121 534 dbSNP
rs765541230 539 dbSNP
rs757404836 542 dbSNP
rs754034434 547 dbSNP
rs918188759 549 dbSNP
rs368166873 552 dbSNP
rs1201335548 556 dbSNP
rs1412037675 558 dbSNP
rs1157293689 559 dbSNP
rs760712704 570 dbSNP
rs775532503 574 dbSNP
rs1237312642 580 dbSNP
rs1192422294 584 dbSNP
rs192854624 586 dbSNP
rs759426076 589 dbSNP
rs774003696 594 dbSNP
rs770685730 596 dbSNP
rs142925424 597 dbSNP
rs1293410158 598 dbSNP
rs149864129 601 dbSNP
rs769243083 610 dbSNP
rs369378333 611 dbSNP
rs780650210 613 dbSNP
rs59218593 616 dbSNP
rs758805513 619 dbSNP
rs141416728 624 dbSNP
rs767654079 625 dbSNP
rs779138207 627 dbSNP
rs757503307 630 dbSNP
rs1437008012 633 dbSNP
rs754067152 637 dbSNP
rs1279546617 640 dbSNP
rs1174883852 642 dbSNP
rs7104422 652 dbSNP
rs774293614 654 dbSNP
rs1421018339 655 dbSNP
rs756307458 663 dbSNP
rs752803589 670 dbSNP
rs767548665 671 dbSNP
rs759389768 672 dbSNP
rs751375845 673 dbSNP
rs1210205773 680 dbSNP
rs766028886 682 dbSNP
rs1232804537 683 dbSNP
rs1310726604 684 dbSNP
rs762613562 685 dbSNP
rs966144470 690 dbSNP
rs1018945226 692 dbSNP
rs772811318 697 dbSNP
rs966324653 705 dbSNP
rs769404815 708 dbSNP
rs761358647 710 dbSNP
rs1376409186 711 dbSNP
rs375316720 712 dbSNP
rs772700323 714 dbSNP
rs746292343 716 dbSNP
rs1170451748 717 dbSNP
rs1477227343 718 dbSNP
rs779359933 719 dbSNP
rs200933626 724 dbSNP
rs369543137 730 dbSNP
rs375270437 731 dbSNP
rs756391552 733 dbSNP
rs752890343 736 dbSNP
rs1253335984 745 dbSNP
rs1205253336 747 dbSNP
rs574997915 757 dbSNP
rs1360213312 759 dbSNP
rs1011165346 764 dbSNP
rs545246063 772 dbSNP
rs1299598754 780 dbSNP
rs1048957414 786 dbSNP
rs1001657620 795 dbSNP
rs895288547 799 dbSNP
rs556499256 813 dbSNP
rs750858491 822 dbSNP
rs1001219526 823 dbSNP
rs1473199476 825 dbSNP
rs188385676 826 dbSNP
rs949734111 830 dbSNP
rs1214787581 836 dbSNP
rs1288390448 845 dbSNP
rs906988675 847 dbSNP
rs1181342316 851 dbSNP
rs912924249 853 dbSNP
rs574421830 855 dbSNP
rs1426078909 857 dbSNP
rs1184708525 863 dbSNP
rs1380099987 881 dbSNP
rs940387804 883 dbSNP
rs1259134062 884 dbSNP
rs1052636097 888 dbSNP
rs764385299 892 dbSNP
rs56203329 895 dbSNP
rs552972278 897 dbSNP
rs61303135 900 dbSNP
rs570521799 911 dbSNP
rs930567416 918 dbSNP
rs55868530 919 dbSNP
rs1227243385 928 dbSNP
rs138903376 938 dbSNP
rs953561631 939 dbSNP
rs1316695578 940 dbSNP
rs922051074 948 dbSNP
rs1317760560 951 dbSNP
rs867485384 960 dbSNP
rs557502262 961 dbSNP
rs548743676 962 dbSNP
rs1331795688 971 dbSNP
rs775454670 977 dbSNP
rs372260179 980 dbSNP
rs978204137 980 dbSNP
rs55912112 982 dbSNP
rs983358121 983 dbSNP
rs1164079088 984 dbSNP
rs1022308168 995 dbSNP
rs1432268978 997 dbSNP
rs757596647 998 dbSNP
rs1378910843 1000 dbSNP
rs539263492 1000 dbSNP
rs185113430 1001 dbSNP
rs905720108 1006 dbSNP
rs1398010783 1007 dbSNP
rs1448829106 1009 dbSNP
rs1024040966 1012 dbSNP
rs531509282 1020 dbSNP
rs1218885877 1022 dbSNP
rs1299438016 1037 dbSNP
rs1325800402 1042 dbSNP
rs1224194275 1046 dbSNP
rs1014462656 1055 dbSNP
rs1201034329 1059 dbSNP
rs1456833156 1059 dbSNP
rs1233843198 1061 dbSNP
rs1033794360 1062 dbSNP
rs1003699764 1063 dbSNP
rs891456926 1069 dbSNP
rs532861368 1073 dbSNP
rs1269015348 1078 dbSNP
rs1487749595 1082 dbSNP
rs1052728766 1088 dbSNP
rs935547858 1089 dbSNP
rs904130422 1092 dbSNP
rs1044253078 1093 dbSNP
rs971115438 1108 dbSNP
rs932154022 1112 dbSNP
rs1420753186 1115 dbSNP
rs1024432683 1117 dbSNP
rs55723753 1118 dbSNP
rs976189806 1124 dbSNP
rs1433988821 1131 dbSNP
rs61047121 1133 dbSNP
rs1347603660 1143 dbSNP
rs1237422555 1151 dbSNP
rs1277648015 1153 dbSNP
rs1048745865 1173 dbSNP
rs907840870 1174 dbSNP
rs1216881283 1184 dbSNP
rs1274290852 1188 dbSNP
rs531827443 1200 dbSNP
rs192879509 1202 dbSNP
rs776766128 1206 dbSNP
rs983452959 1210 dbSNP
rs1219809353 1214 dbSNP
rs1271425615 1220 dbSNP
rs951915876 1222 dbSNP
rs867016827 1226 dbSNP
rs994744232 1230 dbSNP
rs1309608719 1240 dbSNP
rs1027561656 1246 dbSNP
rs1038884443 1249 dbSNP
rs1225252007 1250 dbSNP
rs944484322 1251 dbSNP
rs980450390 1259 dbSNP
rs1403451769 1260 dbSNP
rs1166666130 1264 dbSNP
rs1425561649 1265 dbSNP
rs1292848510 1268 dbSNP
rs1297801058 1272 dbSNP
rs1437130148 1273 dbSNP
rs1367481443 1274 dbSNP
rs1338575023 1277 dbSNP
rs1296422428 1278 dbSNP
rs1419264185 1282 dbSNP
rs796668628 1283 dbSNP
rs1042836387 1289 dbSNP
rs201022812 1290 dbSNP
rs1256277487 1291 dbSNP
rs945499197 1294 dbSNP
rs1283398620 1296 dbSNP
rs1294444475 1296 dbSNP
rs969914692 1296 dbSNP
rs1448295453 1297 dbSNP
rs915208204 1297 dbSNP
rs1284149832 1300 dbSNP
rs1185299904 1306 dbSNP
rs1236320377 1306 dbSNP
rs1471770315 1306 dbSNP
rs372688224 1306 dbSNP
rs386372994 1306 dbSNP
rs58997106 1306 dbSNP
rs757333650 1306 dbSNP
rs958858695 1306 dbSNP
rs1317750022 1307 dbSNP
rs1203863129 1314 dbSNP
rs1337615623 1319 dbSNP
rs1274137916 1320 dbSNP
rs1306698305 1322 dbSNP
rs1034551563 1325 dbSNP
rs1352407609 1331 dbSNP
rs1205281976 1333 dbSNP
rs1277336349 1345 dbSNP
rs1235671128 1346 dbSNP
rs1440176574 1348 dbSNP
rs764295184 1349 dbSNP
rs1356720505 1351 dbSNP
rs55654878 1352 dbSNP
rs55773013 1357 dbSNP
rs1375016008 1358 dbSNP
rs1431542895 1359 dbSNP
rs1298415070 1360 dbSNP
rs1316349709 1362 dbSNP
rs1455528245 1365 dbSNP
rs1365262364 1366 dbSNP
rs1396612871 1367 dbSNP
rs1471300120 1370 dbSNP
rs1024596016 1371 dbSNP
rs1165287512 1376 dbSNP
rs574338738 1388 dbSNP
rs1412800401 1390 dbSNP
rs891551555 1396 dbSNP
rs1407453703 1397 dbSNP
rs1031276005 1401 dbSNP
rs1464815705 1412 dbSNP
rs1329734040 1413 dbSNP
rs999830238 1423 dbSNP
rs1411157210 1424 dbSNP
rs1397497142 1431 dbSNP
rs573386255 1437 dbSNP
rs926915448 1440 dbSNP
rs1224804348 1449 dbSNP
rs1263155349 1450 dbSNP
rs904225250 1451 dbSNP
rs531499509 1468 dbSNP
rs1015783575 1469 dbSNP
rs1043962865 1470 dbSNP
rs1438165522 1473 dbSNP
rs1182846989 1474 dbSNP
rs1246339353 1475 dbSNP
rs932262842 1476 dbSNP
rs112407000 1477 dbSNP
rs540942192 1479 dbSNP
rs1470170408 1482 dbSNP
rs539837778 1484 dbSNP
rs1166612662 1485 dbSNP
rs577606751 1486 dbSNP
rs1027728092 1488 dbSNP
rs1329010446 1490 dbSNP
rs944733123 1493 dbSNP
rs1215342914 1494 dbSNP
rs1316698034 1498 dbSNP
rs571697587 1503 dbSNP
rs1253930263 1508 dbSNP
rs1268430698 1516 dbSNP
rs978976112 1517 dbSNP
rs1252968340 1519 dbSNP
rs1204041697 1523 dbSNP
rs1209002782 1531 dbSNP
rs968962856 1531 dbSNP
rs9919565 1534 dbSNP
rs1256057848 1535 dbSNP
rs1008832055 1537 dbSNP
rs777088878 1539 dbSNP
rs56208572 1540 dbSNP
rs980037029 1541 dbSNP
rs1375275339 1543 dbSNP
rs1462894061 1548 dbSNP
rs1163047585 1554 dbSNP
rs747761151 1567 dbSNP
rs970389820 1568 dbSNP
rs1378705221 1570 dbSNP
rs917051315 1576 dbSNP
rs776432955 1577 dbSNP
rs992640194 1579 dbSNP
rs189922769 1580 dbSNP
rs1053710764 1591 dbSNP
rs937971801 1592 dbSNP
rs1031369025 1593 dbSNP
rs999923544 1595 dbSNP
rs968350183 1598 dbSNP
rs1323755365 1600 dbSNP
rs1225063899 1609 dbSNP
rs536766014 1615 dbSNP
rs982308177 1616 dbSNP
rs971029460 1617 dbSNP
rs1203482092 1627 dbSNP
rs1028440387 1642 dbSNP
rs1263861853 1651 dbSNP
rs996409747 1651 dbSNP
rs546805991 1657 dbSNP
rs1187401435 1664 dbSNP
rs1383833381 1665 dbSNP
rs1446793097 1671 dbSNP
rs1398619425 1686 dbSNP
rs1359480430 1692 dbSNP
rs1170531373 1696 dbSNP
rs908692794 1707 dbSNP
rs778507337 1715 dbSNP
rs528480876 1722 dbSNP
rs900752352 1723 dbSNP
rs1466630236 1733 dbSNP
rs1373082146 1740 dbSNP
rs1395406239 1759 dbSNP
rs1312802462 1763 dbSNP
rs1384773586 1766 dbSNP
rs547772933 1771 dbSNP
rs1308188664 1772 dbSNP
rs1009057676 1776 dbSNP
rs756521555 1779 dbSNP
rs1237105786 1783 dbSNP
rs1262595003 1784 dbSNP
rs1421603378 1785 dbSNP
rs1027368104 1788 dbSNP
rs567591992 1791 dbSNP
rs1047839817 1792 dbSNP
rs61546381 1800 dbSNP
rs1197865802 1801 dbSNP
rs550108605 1803 dbSNP
rs1340008642 1804 dbSNP
rs1009211134 1806 dbSNP
rs760513966 1807 dbSNP
rs1408230884 1808 dbSNP
rs1044795401 1826 dbSNP
rs1321239884 1830 dbSNP
rs55981807 1832 dbSNP
rs917168813 1842 dbSNP
rs1019924401 1845 dbSNP
rs6578672 1850 dbSNP
rs955852564 1871 dbSNP
rs1392416751 1876 dbSNP
rs1204818281 1879 dbSNP
rs1237977733 1889 dbSNP
rs1479849999 1896 dbSNP
rs924484966 1904 dbSNP
rs1053761644 1905 dbSNP
rs1432180079 1909 dbSNP
rs1173644121 1916 dbSNP
rs978472264 1917 dbSNP
rs1162041886 1926 dbSNP
rs878919151 1931 dbSNP
rs1455917005 1939 dbSNP
rs1367408561 1940 dbSNP
rs1169848367 1948 dbSNP
rs968878709 1952 dbSNP
rs905186625 1953 dbSNP
rs762249246 1954 dbSNP
rs1378188848 1955 dbSNP
rs1177761482 1959 dbSNP
rs1566282 1962 dbSNP
rs55975351 1963 dbSNP
rs965102905 1967 dbSNP
rs1347414791 1979 dbSNP
rs1224715080 1982 dbSNP
rs559043001 1987 dbSNP
rs56897889 2001 dbSNP
rs1207082556 2018 dbSNP
rs1252185013 2020 dbSNP
rs1488169270 2029 dbSNP
rs1292629269 2035 dbSNP
rs1270477035 2050 dbSNP
rs35168240 2068 dbSNP
rs76663679 2070 dbSNP
rs920104223 2072 dbSNP
rs1411533084 2073 dbSNP
rs973126590 2080 dbSNP
rs1308872488 2083 dbSNP
rs1009193733 2096 dbSNP
rs1240200191 2097 dbSNP
rs964479868 2099 dbSNP
rs1017267298 2106 dbSNP
rs74051065 2108 dbSNP
rs57911845 2112 dbSNP
rs543772722 2114 dbSNP
rs954783201 2122 dbSNP
rs1047935368 2124 dbSNP
rs1216794075 2126 dbSNP
rs1296769669 2133 dbSNP
rs1359145296 2140 dbSNP
rs1386740235 2150 dbSNP
rs536086572 2158 dbSNP
rs1490387955 2170 dbSNP
rs57900140 2171 dbSNP
rs554823568 2176 dbSNP
rs1032162220 2177 dbSNP
rs1186980916 2180 dbSNP
rs1426069717 2189 dbSNP
rs1378093912 2192 dbSNP
rs1157677379 2202 dbSNP
rs1442512584 2206 dbSNP
rs1470378042 2208 dbSNP
rs58536860 2213 dbSNP
rs1425465890 2216 dbSNP
rs917277865 2217 dbSNP
rs1317762011 2222 dbSNP
rs1056973113 2226 dbSNP
rs1343459999 2227 dbSNP
rs368203234 2229 dbSNP
rs1365344115 2231 dbSNP
rs934610592 2233 dbSNP
rs1382597651 2236 dbSNP
rs1196612416 2243 dbSNP
rs1432528064 2248 dbSNP
rs572511870 2252 dbSNP
rs905322333 2257 dbSNP
rs1046829740 2261 dbSNP
rs1448196749 2278 dbSNP
rs141477452 2280 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uggucaacggagaugUCAGAAAu 5'
                         ||||||| 
Target 5' ------------ucaAGUCUUUa 3'
 		1 - 11
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000396847.3 | 3UTR | UCAAGUCUUUAUCAAGAUUUCUCUCAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-7161-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT131193 INCENP inner centromere protein 2 4
MIRT318016 CENPQ centromere protein Q 2 2
MIRT405275 ZNF678 zinc finger protein 678 2 2
MIRT442570 CCDC59 coiled-coil domain containing 59 2 2
MIRT442611 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT444013 GOLGA8H golgin A8 family member H 2 2
MIRT444024 GOLGA8M golgin A8 family member M 2 2
MIRT444339 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT444611 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT446342 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT446558 GOLGA8J golgin A8 family member J 2 2
MIRT447671 PACSIN2 protein kinase C and casein kinase substrate in neurons 2 2 2
MIRT447975 MSH6 mutS homolog 6 2 2
MIRT448895 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT448936 CHD7 chromodomain helicase DNA binding protein 7 2 2
MIRT449414 TRIM5 tripartite motif containing 5 2 2
MIRT450291 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT454877 PCNA proliferating cell nuclear antigen 2 4
MIRT456615 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT462108 TMEM214 transmembrane protein 214 2 2
MIRT471923 NRAS NRAS proto-oncogene, GTPase 2 4
MIRT474437 KLHL21 kelch like family member 21 2 2
MIRT476600 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT480573 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT483890 IL20RB interleukin 20 receptor subunit beta 2 6
MIRT493363 KIF5B kinesin family member 5B 2 2
MIRT494934 TMEM167A transmembrane protein 167A 2 2
MIRT495915 CLDN1 claudin 1 2 2
MIRT501574 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502193 IGF1R insulin like growth factor 1 receptor 2 4
MIRT502928 CDC42SE1 CDC42 small effector 1 2 4
MIRT506393 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 4
MIRT506570 MNX1 motor neuron and pancreas homeobox 1 2 4
MIRT509478 GNL3L G protein nucleolar 3 like 2 6
MIRT518537 FLCN folliculin 2 6
MIRT519577 ZNFX1 zinc finger NFX1-type containing 1 2 4
MIRT524088 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 4
MIRT524146 LDHD lactate dehydrogenase D 2 4
MIRT524659 C1orf50 chromosome 1 open reading frame 50 2 10
MIRT526324 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526566 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526612 ZNF780A zinc finger protein 780A 2 4
MIRT526889 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT527115 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT528023 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT529589 TMEM220 transmembrane protein 220 2 2
MIRT532797 STYK1 serine/threonine/tyrosine kinase 1 2 2
MIRT537099 GPC6 glypican 6 2 2
MIRT539070 ATP6V1C1 ATPase H+ transporting V1 subunit C1 2 2
MIRT545495 DAPK2 death associated protein kinase 2 2 2
MIRT545814 ZNF608 zinc finger protein 608 2 4
MIRT553533 TMEM185B transmembrane protein 185B 2 4
MIRT557285 HIST2H2BE histone cluster 2 H2B family member e 2 2
MIRT559552 ARGLU1 arginine and glutamate rich 1 2 4
MIRT561069 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT561710 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT561995 LRRC58 leucine rich repeat containing 58 2 2
MIRT565896 NHS NHS actin remodeling regulator 2 2
MIRT567333 HMGB1 high mobility group box 1 2 2
MIRT568042 CLDN12 claudin 12 2 2
MIRT568315 BAG4 BCL2 associated athanogene 4 2 2
MIRT570677 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT571047 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT571359 SFT2D2 SFT2 domain containing 2 2 2
MIRT571935 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT572786 ZNF277 zinc finger protein 277 2 2
MIRT573936 CNTNAP2 contactin associated protein like 2 2 2
MIRT576962 Anxa4 annexin A4 2 3
MIRT608297 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT613342 AFF1 AF4/FMR2 family member 1 2 2
MIRT613529 ANAPC7 anaphase promoting complex subunit 7 2 2
MIRT614705 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT616658 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT624731 ANXA4 annexin A4 2 3
MIRT626525 TSC1 TSC complex subunit 1 2 2
MIRT627647 SCN1A sodium voltage-gated channel alpha subunit 1 2 2
MIRT637423 EPB41L3 erythrocyte membrane protein band 4.1 like 3 2 2
MIRT641059 TCP11L1 t-complex 11 like 1 2 4
MIRT645591 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT646455 ZNF705A zinc finger protein 705A 2 2
MIRT656454 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT676551 TMPPE transmembrane protein with metallophosphoesterase domain 2 4
MIRT682720 KIAA1456 KIAA1456 2 2
MIRT698307 TMEM2 transmembrane protein 2 2 2
MIRT701906 MMGT1 membrane magnesium transporter 1 2 2
MIRT702228 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT708642 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT709326 HMBOX1 homeobox containing 1 2 2
MIRT711400 RANBP2 RAN binding protein 2 2 2
MIRT712130 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT714226 ARMC10 armadillo repeat containing 10 2 2
MIRT716914 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT723060 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT723846 MN1 MN1 proto-oncogene, transcriptional regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-7161-5p Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer cell line (HEYA8)

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