miRTarBase - #MIRT449602


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pre-miRNA Information
pre-miRNA hsa-mir-655   
Genomic Coordinates chr14: 101049550 - 101049646
Synonyms MIRN655, hsa-mir-655, MIR655
Description Homo sapiens miR-655 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-655-5p
Sequence 23| AGAGGUUAUCCGUGUUAUGUUC |44
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs766575622 4 dbSNP
rs754023562 5 dbSNP
rs757713353 10 dbSNP
rs369862924 11 dbSNP
rs552601004 12 dbSNP
rs753191773 14 dbSNP
rs569206109 15 dbSNP
rs373094888 18 dbSNP
rs778280798 22 dbSNP
Putative Targets

Gene Information
Gene Symbol INIP   
Synonyms C9orf80, HSPC043, MISE, SOSSC, SSBIP1, hSSBIP1
Description INTS3 and NABP interacting protein
Transcript NM_021218   
Expression
Putative miRNA Targets on INIP
3'UTR of INIP
(miRNA target sites are highlighted)		 
>INIP|NM_021218|3'UTR
   1 AGAAAACATTTGCGATGGAAAAGTGACTTTGTAATATCAAATGCCAAAGCTACTATCATTCAGTGCTACATGAACTGTGA
  81 CTTTAAGAATTTTGGTGAACTTTGATATTTTTTGTTTGTCTGAAAGAAAGGAATGTGTAAGTGAAAGCTGAAAGAAGAAT
 161 AACCAGGATGATGAGAGCTGTGGAAGCTGTATCGTCCAAGGAATTGATTATGTACCGTGACTGTAACTTTTTTGTAATGC
 241 TGTTTAACTCTCAATCAGACTGTGAACTGGATGGTCACGAAGTCATTCCCCAACTCCTAGCAAGTTTGACTGAATATATC
 321 ATGTCCACAGTAGATTTTCAAGAATCATTTATAGTACTTAACTTTAAAGAAACAAGGCTGCTTTTAAAAAATGAACTAAT
 401 AGGCTTAAATCAATTGCATCCATATTTGCTGTTTATAGGATTGCTATCAGTATACCTTTTGCGTTTATAGTCAACATGTA
 481 TCATCCTGAAATATTCTTTCTGGACTTATAACTACTTCCCCCTTTTTCACTTTAAAACAAACCTCAAGAATAAATTACTA
 561 ACCAGTCTTAACCATCTTTTATAAACATATGCTCTTATAAATGTTGTGACTAGATGCAATTAAAAATAATAGGGAATGTG
 641 GTAGGTTTTTAATTTGTACATCCTCTTATTTAGTGTTACCACATAAATGATGAGTTTGTGTGGTTCTGTTTTCCATTTTT
 721 GTTCTAACTGAAAACTTTTTGGCTGGGCACGGTGCCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGA
 801 TCACTTGAGATCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAGTATAAAAAATTAGCC
 881 ATGTGTGGTGGCACACGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGGGG
 961 TTGCAGTGAGCTGAGACGGTGTCACTGCACTCCAGCCTGGGTGACAGTGAGTCTTTGTCTCAAAGAAAAAAAGAAAAAGA
1041 AAACTTATGCAAGTCGAGCTCCTTTTTAATTAAGTAGGAAGGGATTAGGTTAAGAAAGTCTCTCAACATGACCCATCTTT
1121 AGCAGTATCTGGGGTGCTTATTTAAGTATGCAGTCCCACTACCCTACCCTAGTCCTACAGAATTAGAATCTGATTCAAAA
1201 TAAAGTCTGAAAACCATGAGATAGAGAATTCTATGAAATATCTTGTACAGATTTTCGTGATATATTTATACACGCATGGG
1281 TTTGTAGATCCCTGAAACTTAGAGGTCATTTAGCTAAAATCTACATTTTTTTTAACTTTTAATAGGATTGAAATGATATT
1361 TTACACTGTATCACAGATACAGTATTTTATATAACTTTTTGTAACTGACCTTATCTTGGCCTTGAGTCCCATCCTCTCTG
1441 GTGGTAGCGTAAAACTGAAAATTCCAGTTTGGGTCAATATTTAGTGAAAGTTCTACTTTCTTTTCAGAGAGTTTGTTCCC
1521 CCCTTTCTTCCTTAGATGTTTTCAAACACACAGCCCCATCCTACTCAAACCAAGTGAAGCAAGAGTGGACAATTCTAGAA
1601 TTGGCTGTGCCATGTAGGTTTTTTTTAGAATTTGAACTGATTTCCTTCATTTTGATGAGGTGGCAACTGTCCCCATTGTA
1681 ATGGTCACCATTGCAGCGAGGATAGCCTTACTTCTGCGGCGCAGAGCTCCTCAGGGGGCCTCTGGCTCCTGTCCTTCCTC
1761 AGGTCCATCCAACTACTCCTTGGGCCTCCTTATGGTAGCCCTCATTGTCTTGAGTTGATTTCACTAGGTTTCTGTTCTCT
1841 GTCATCTGCAACATAACTGACATGGTTCTAAATCTGTCTCTAAGGAGATAACACATTAGTATATTTTCTACACTATTGAA
1921 GCCTCTACCTAATGTATGACTTTTGTAGCTCAGGTAAAGAGATCTTTTTACCAGTGTTATCGTTTCTAGTCTGTTTGTTA
2001 GTCTTCTTTTAAATAGATATGGCCTAAATCCTGTATTCCTGGCTAGGAAGCACTTCTCTCCACCCCTCTGCTTTGAGTTA
2081 CAAATTCAATTCAATTTCCTATGTATTTATTAATACCTACAGATAAAGTACTGTGCTTTGGGGGACACAAAGGTGACTGG
2161 TACCTGCTCTTTTAGGAGGTCACCGTGCAGAGGATCCTATTCTGGTACACCAATAGTTATAAAGCAAGCCACAGCCTAGG
2241 CAACATAGTGAGACCCCTGTCTCTACTAAAAAATTAAAAAAAAAAAAAAAAGATTGGCTAGGTGTGCTGGTGCATGCATA
2321 GAGTCCCAGCCACTCGGGAGGCTGAGGTGGGAGGATTGCTTGAGCCTGGGAGGTTGAGGCTGCAGTGGGCCATGATTGCA
2401 CAACTTGGCAACAGAGTGAGACCCTGTCTCTAAATCAATCAATCAAGCGAGCCAGAATGCAGTAGTGGCCTGAGAGAGGC
2481 ATCCTGGAACGCAGTGCGGTCTGGCTAGGCTTAGAAGTATTCATGTGATTTTTACCTGACAAGGGAAGGAAGAGCTGCTC
2561 CACGTGCAGAGCAAGGTTTCAGAATGAGAGGAGAAGAGCAGGCACTGCAGAGGGTGAGGGAAAGGGCAGCAGTGGACTGG
2641 GAAGCCCTCAGGTGGAGGTCAGCATTGCTTCCCTCAGATCATGGGTGAATTTGAGGAACTCAGTTAATATCTTTGTATGT
2721 TCCTCCCTCCATAAGGTGAGAACAAGCACATGCTCTGCCCATGTCAGAAATTGTCTAGACTAGTGTTTTTCAAAGTGCAA
2801 AAGCCTCAACCCATTACTGAGTTGAGAAGCCAACTTAATGGTTTAACAGGATTGACCAGCATTTTTTCCGAAAAAATCAA
2881 AAACATCTGAGTGTACTGCATATAGAAATAGGTGGTTTTGCCTCATGAATATTCTGTTTCTGTGTGTTCCTATATTTTAC
2961 TTTGTATTGTGTTGGTTTTTTAAGAGACAGTCCTGCTCTGTCATCCAGGCTGGAGTGCAGTGGTATAATCATAGCTCACT
3041 GCAAGACTCCTTGAATCCCTGGGCTCAAGCAATCCTCAACCCTTAGCCTCCCAAGTAGCTGAGACTACAGGCACATGCCA
3121 CCATGCCCAGCTAATTTTTTTTTTTTTTTAATTTTTGTAGAGACAGCATCTTGCTATGTTGCCCAGGCTGGTCTTGAACT
3201 CTTGGCCTCAAGCAGTCCTCTCGATCCTCCCACCTTGGCCTCCTAAAGTGCTGAGATTACAGGTGTGAGCCACTGCATCT
3281 GGCTTACTTATTTTGTCTATTGTCTGTTCCACTAGTATGTAAAGTCTTAGAGAGCAAGAATTTTTGTTTATTTCTTTCTC
3361 TTCCTCCTTTCCTTTCTTCCTCTTTTACTTCGTTCACTACTGTATTCCACATAAAATATATTTGGCATATAGTAGGTGTT
3441 CAATATGTTGAAGGAATGAAAGAATTTATAGACTTGAGTTGCAATATAAAATGTATTTTTTTTTACTGTGAGTTATGGCA
3521 AAAAAAGTTTTGAAAGCCGCTTCTAAATAATGCAGATGTCAGTGCTTTGACCCTGGAATAAAAACTGAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuuGUA---UUGUGCCUAUUGGAGa 5'
             |||   |:|: |||||:|||: 
Target 5' cacCATTGCAGCGAGGATAGCCTTa 3'
 1686 - 1710 135.00 -14.60
2 
miRNA  3' cuuguaUUGUGCCUAUUGGAGa 5'
                ||| |   ||:|||| 
Target 5' atcctcAACCC--TTAGCCTCc 3'
 3072 - 3091 128.00 -7.60
3 
miRNA  3' cuuGUAUUGUG-CCUAUUG-GAGa 5'
             ::|||::| |  |||| ||| 
Target 5' tttTGTAATGCTGTTTAACTCTCa 3'
 230 - 253 123.00 -5.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM6685904 12 COSMIC
COSM8169688 13 COSMIC
COSM6685905 16 COSMIC
COSN5118235 55 COSMIC
COSN30147037 61 COSMIC
COSN28710186 252 COSMIC
COSN30531245 254 COSMIC
COSN6376313 506 COSMIC
COSN4924703 755 COSMIC
COSN17854402 1619 COSMIC
COSN9695871 1698 COSMIC
COSN26383711 1764 COSMIC
COSN22561616 1801 COSMIC
COSN9461628 1877 COSMIC
COSN17560913 1964 COSMIC
COSN17214935 2329 COSMIC
COSN6602734 2726 COSMIC
COSN14895844 2853 COSMIC
COSN21851558 3227 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs200377309 1 dbSNP
rs746742474 2 dbSNP
rs1404211504 6 dbSNP
rs1419673603 12 dbSNP
rs753204371 13 dbSNP
rs758525818 14 dbSNP
rs750570977 23 dbSNP
rs1367749394 27 dbSNP
rs369116300 29 dbSNP
rs757893139 31 dbSNP
rs1374813752 33 dbSNP
rs1255085845 35 dbSNP
rs1212105775 40 dbSNP
rs752683964 44 dbSNP
rs182168041 51 dbSNP
rs1221625664 52 dbSNP
rs754406239 55 dbSNP
rs764439079 64 dbSNP
rs1337957308 65 dbSNP
rs761130344 66 dbSNP
rs1235434130 69 dbSNP
rs752984201 70 dbSNP
rs1323453186 72 dbSNP
rs766098900 75 dbSNP
rs1012394514 78 dbSNP
rs1354608229 79 dbSNP
rs1485226286 90 dbSNP
rs959122411 107 dbSNP
rs1303634791 113 dbSNP
rs1234557057 114 dbSNP
rs770229733 122 dbSNP
rs1176729738 129 dbSNP
rs557640511 136 dbSNP
rs537660052 147 dbSNP
rs555119345 150 dbSNP
rs1038831511 157 dbSNP
rs943199679 160 dbSNP
rs190287731 163 dbSNP
rs1430826949 166 dbSNP
rs1197028776 167 dbSNP
rs1353305976 193 dbSNP
rs755323124 194 dbSNP
rs1297158073 199 dbSNP
rs950369991 204 dbSNP
rs918962622 206 dbSNP
rs1008169998 211 dbSNP
rs891109421 216 dbSNP
rs1214998854 217 dbSNP
rs754221331 219 dbSNP
rs537156612 225 dbSNP
rs1049766221 232 dbSNP
rs1436077444 240 dbSNP
rs1432605351 252 dbSNP
rs1253642295 253 dbSNP
rs79679349 255 dbSNP
rs1191929653 258 dbSNP
rs1202175354 259 dbSNP
rs786969 262 dbSNP
rs1170069951 265 dbSNP
rs1263163663 267 dbSNP
rs1217796858 268 dbSNP
rs866617188 273 dbSNP
rs1353381669 278 dbSNP
rs1394526918 281 dbSNP
rs960287173 285 dbSNP
rs1036357475 289 dbSNP
rs1369846715 293 dbSNP
rs1262058485 310 dbSNP
rs1431194742 317 dbSNP
rs1054521178 321 dbSNP
rs1337222907 324 dbSNP
rs1001689650 330 dbSNP
rs1213855360 334 dbSNP
rs565589363 335 dbSNP
rs1230630381 342 dbSNP
rs970645166 346 dbSNP
rs548957009 348 dbSNP
rs1406290887 352 dbSNP
rs1011690797 353 dbSNP
rs1211941348 357 dbSNP
rs1338313537 357 dbSNP
rs1297575532 390 dbSNP
rs1447856791 392 dbSNP
rs761504305 393 dbSNP
rs773772557 413 dbSNP
rs1195616713 420 dbSNP
rs891796830 421 dbSNP
rs1053141953 422 dbSNP
rs1382508749 423 dbSNP
rs997525377 430 dbSNP
rs924819041 444 dbSNP
rs901720062 445 dbSNP
rs1462530258 449 dbSNP
rs1162258590 450 dbSNP
rs1386885277 450 dbSNP
rs1170989805 456 dbSNP
rs1400871774 459 dbSNP
rs763552684 462 dbSNP
rs917544415 463 dbSNP
rs551420713 467 dbSNP
rs528821548 468 dbSNP
rs1231515125 472 dbSNP
rs959071376 474 dbSNP
rs1351497985 486 dbSNP
rs909063210 501 dbSNP
rs1423538679 509 dbSNP
rs1446764803 514 dbSNP
rs973857787 523 dbSNP
rs1260223560 542 dbSNP
rs1449044000 558 dbSNP
rs1048795718 562 dbSNP
rs1470229102 565 dbSNP
rs775349214 574 dbSNP
rs1015457697 575 dbSNP
rs1382372324 581 dbSNP
rs1200278105 582 dbSNP
rs1418857879 584 dbSNP
rs1313316533 590 dbSNP
rs1008534061 591 dbSNP
rs569617501 611 dbSNP
rs1311960724 614 dbSNP
rs919014906 615 dbSNP
rs549636829 627 dbSNP
rs1315535852 634 dbSNP
rs1277419978 643 dbSNP
rs1228091512 646 dbSNP
rs991747839 651 dbSNP
rs1327941013 662 dbSNP
rs960672434 679 dbSNP
rs532977432 694 dbSNP
rs199597686 698 dbSNP
rs1395291784 700 dbSNP
rs769581611 702 dbSNP
rs970231867 707 dbSNP
rs786968 708 dbSNP
rs1361687439 721 dbSNP
rs776477055 723 dbSNP
rs1438630545 724 dbSNP
rs1173881108 727 dbSNP
rs1396619346 740 dbSNP
rs1432652003 741 dbSNP
rs1054465244 743 dbSNP
rs1397177650 744 dbSNP
rs1464072873 750 dbSNP
rs1327000637 751 dbSNP
rs1376277040 756 dbSNP
rs528576596 760 dbSNP
rs1132085 767 dbSNP
rs1132086 768 dbSNP
rs879805817 769 dbSNP
rs1305940835 794 dbSNP
rs1346113045 797 dbSNP
rs956072706 799 dbSNP
rs1423028404 804 dbSNP
rs771110485 810 dbSNP
rs1194595397 812 dbSNP
rs1476655760 813 dbSNP
rs1247722747 814 dbSNP
rs997502749 822 dbSNP
rs1456954443 835 dbSNP
rs1193822847 839 dbSNP
rs559548285 840 dbSNP
rs1187261217 848 dbSNP
rs764886198 852 dbSNP
rs761835487 864 dbSNP
rs1175180157 865 dbSNP
rs543010269 867 dbSNP
rs1243300710 877 dbSNP
rs1007928803 882 dbSNP
rs887605108 887 dbSNP
rs1048846787 888 dbSNP
rs1045910847 893 dbSNP
rs1456033462 894 dbSNP
rs929146377 896 dbSNP
rs897557658 897 dbSNP
rs1341361236 898 dbSNP
rs141836969 901 dbSNP
rs939018434 906 dbSNP
rs916166618 907 dbSNP
rs1258002775 910 dbSNP
rs1316721734 911 dbSNP
rs557699893 917 dbSNP
rs1274659570 932 dbSNP
rs1466906138 934 dbSNP
rs786967 939 dbSNP
rs1317357624 951 dbSNP
rs949019461 954 dbSNP
rs578231505 959 dbSNP
rs1444875269 961 dbSNP
rs558329270 970 dbSNP
rs990277788 977 dbSNP
rs549988063 978 dbSNP
rs956209889 981 dbSNP
rs1031731492 988 dbSNP
rs1411781405 992 dbSNP
rs534462561 1002 dbSNP
rs531503176 1004 dbSNP
rs976601290 1007 dbSNP
rs961131068 1014 dbSNP
rs565780013 1016 dbSNP
rs966071365 1018 dbSNP
rs1278091585 1023 dbSNP
rs1015821388 1031 dbSNP
rs986655986 1033 dbSNP
rs1185008960 1039 dbSNP
rs955437049 1043 dbSNP
rs1028235460 1044 dbSNP
rs1018057383 1048 dbSNP
rs1260971757 1048 dbSNP
rs1007566810 1049 dbSNP
rs887656177 1055 dbSNP
rs185375510 1056 dbSNP
rs758492479 1058 dbSNP
rs748666221 1070 dbSNP
rs1321136164 1073 dbSNP
rs547755987 1075 dbSNP
rs1262367107 1077 dbSNP
rs1475459228 1082 dbSNP
rs1189983659 1083 dbSNP
rs1415715327 1084 dbSNP
rs1033005078 1088 dbSNP
rs561263750 1094 dbSNP
rs1160072711 1104 dbSNP
rs897693429 1104 dbSNP
rs1298037813 1108 dbSNP
rs779626162 1109 dbSNP
rs535102946 1110 dbSNP
rs569276886 1113 dbSNP
rs1227292607 1116 dbSNP
rs1307228578 1125 dbSNP
rs755528352 1127 dbSNP
rs144681899 1129 dbSNP
rs904847580 1133 dbSNP
rs1284956169 1134 dbSNP
rs763639929 1158 dbSNP
rs1485892428 1163 dbSNP
rs1212873120 1174 dbSNP
rs1235713328 1192 dbSNP
rs1045090310 1198 dbSNP
rs1177920896 1210 dbSNP
rs1410424899 1213 dbSNP
rs946403638 1216 dbSNP
rs1293715561 1222 dbSNP
rs1237748772 1224 dbSNP
rs1396030785 1226 dbSNP
rs1014433607 1233 dbSNP
rs914803150 1237 dbSNP
rs1376420193 1240 dbSNP
rs760161083 1241 dbSNP
rs1444379430 1245 dbSNP
rs111416471 1253 dbSNP
rs930910645 1256 dbSNP
rs369142401 1257 dbSNP
rs529075745 1259 dbSNP
rs751177574 1263 dbSNP
rs570594298 1265 dbSNP
rs976186342 1266 dbSNP
rs966490876 1268 dbSNP
rs910639924 1269 dbSNP
rs1456528158 1271 dbSNP
rs1157210173 1273 dbSNP
rs1393310647 1274 dbSNP
rs986516239 1282 dbSNP
rs1455833619 1284 dbSNP
rs986986998 1285 dbSNP
rs547578276 1312 dbSNP
rs1158794632 1316 dbSNP
rs1173196844 1319 dbSNP
rs527447195 1333 dbSNP
rs957298988 1334 dbSNP
rs975290110 1334 dbSNP
rs1027517238 1344 dbSNP
rs561923155 1348 dbSNP
rs1272803095 1353 dbSNP
rs763609212 1356 dbSNP
rs1271034110 1358 dbSNP
rs1275059269 1358 dbSNP
rs998815852 1377 dbSNP
rs182119308 1378 dbSNP
rs1274038766 1379 dbSNP
rs1024386375 1389 dbSNP
rs1197027106 1391 dbSNP
rs34738642 1401 dbSNP
rs1246445738 1410 dbSNP
rs752198430 1411 dbSNP
rs1035298016 1413 dbSNP
rs1422158231 1419 dbSNP
rs765221388 1420 dbSNP
rs549461835 1425 dbSNP
rs1169409467 1426 dbSNP
rs1342908490 1448 dbSNP
rs759499633 1449 dbSNP
rs1321211470 1455 dbSNP
rs1003384108 1460 dbSNP
rs1405679657 1465 dbSNP
rs1347927464 1469 dbSNP
rs776333738 1472 dbSNP
rs1296960361 1475 dbSNP
rs1044838738 1476 dbSNP
rs786966 1477 dbSNP
rs1346177051 1509 dbSNP
rs760817805 1522 dbSNP
rs1289490810 1523 dbSNP
rs1447908256 1527 dbSNP
rs902753772 1530 dbSNP
rs773498191 1535 dbSNP
rs934934570 1542 dbSNP
rs1261636886 1543 dbSNP
rs899416540 1552 dbSNP
rs1175067556 1576 dbSNP
rs1473507343 1585 dbSNP
rs1480515170 1585 dbSNP
rs1038006529 1592 dbSNP
rs1389618811 1604 dbSNP
rs191642726 1613 dbSNP
rs1401074797 1619 dbSNP
rs939692450 1622 dbSNP
rs786965 1623 dbSNP
rs1399274923 1625 dbSNP
rs35088108 1627 dbSNP
rs1040904518 1640 dbSNP
rs944911872 1641 dbSNP
rs1217725096 1642 dbSNP
rs1357420862 1645 dbSNP
rs138951850 1648 dbSNP
rs786964 1651 dbSNP
rs1224200786 1652 dbSNP
rs1225696523 1665 dbSNP
rs952030881 1667 dbSNP
rs921079881 1672 dbSNP
rs975237134 1681 dbSNP
rs1488186598 1686 dbSNP
rs572146795 1690 dbSNP
rs769082735 1697 dbSNP
rs541619508 1698 dbSNP
rs1367522291 1706 dbSNP
rs1470277446 1709 dbSNP
rs1160115144 1710 dbSNP
rs1378192818 1714 dbSNP
rs961899867 1717 dbSNP
rs572519769 1718 dbSNP
rs555456252 1720 dbSNP
rs749762549 1721 dbSNP
rs1023791830 1726 dbSNP
rs554038892 1733 dbSNP
rs1449227829 1739 dbSNP
rs1307377142 1758 dbSNP
rs1353412681 1761 dbSNP
rs1235531630 1769 dbSNP
rs1034477182 1772 dbSNP
rs893473144 1773 dbSNP
rs995010329 1779 dbSNP
rs899363929 1780 dbSNP
rs1180097674 1785 dbSNP
rs1236019260 1786 dbSNP
rs1168399809 1789 dbSNP
rs1427816779 1791 dbSNP
rs1194089722 1792 dbSNP
rs1420197881 1797 dbSNP
rs542510840 1803 dbSNP
rs999194080 1806 dbSNP
rs1005567437 1814 dbSNP
rs886766597 1821 dbSNP
rs1467293821 1827 dbSNP
rs1329526852 1837 dbSNP
rs1376531242 1840 dbSNP
rs1442086168 1845 dbSNP
rs1303794146 1851 dbSNP
rs1329718774 1852 dbSNP
rs903410063 1853 dbSNP
rs77466035 1854 dbSNP
rs78931835 1857 dbSNP
rs1200052574 1859 dbSNP
rs556479777 1869 dbSNP
rs186858851 1871 dbSNP
rs1456996537 1874 dbSNP
rs786963 1883 dbSNP
rs758033681 1884 dbSNP
rs1269152830 1894 dbSNP
rs1462674371 1899 dbSNP
rs925828746 1899 dbSNP
rs1373615991 1908 dbSNP
rs1478842178 1915 dbSNP
rs1168694671 1916 dbSNP
rs1399666549 1933 dbSNP
rs1462105091 1935 dbSNP
rs1295523977 1938 dbSNP
rs1256276304 1945 dbSNP
rs1203966373 1946 dbSNP
rs752257514 1959 dbSNP
rs920686713 1963 dbSNP
rs971997176 1969 dbSNP
rs940712194 1980 dbSNP
rs1342996938 1981 dbSNP
rs570728046 1982 dbSNP
rs927841270 1996 dbSNP
rs182138559 1999 dbSNP
rs1221784751 2000 dbSNP
rs200937591 2004 dbSNP
rs993238714 2006 dbSNP
rs146784304 2009 dbSNP
rs374183877 2009 dbSNP
rs1209092515 2010 dbSNP
rs1262332509 2014 dbSNP
rs764698929 2020 dbSNP
rs1191428719 2024 dbSNP
rs73551271 2043 dbSNP
rs1384595090 2051 dbSNP
rs183946656 2064 dbSNP
rs1461096381 2081 dbSNP
rs1355035580 2086 dbSNP
rs1457706268 2087 dbSNP
rs1172454395 2095 dbSNP
rs1403334006 2097 dbSNP
rs1362848162 2099 dbSNP
rs372022820 2101 dbSNP
rs1298144251 2102 dbSNP
rs180876704 2117 dbSNP
rs1030774589 2127 dbSNP
rs550644929 2128 dbSNP
rs999162956 2130 dbSNP
rs1446642374 2140 dbSNP
rs1243630421 2149 dbSNP
rs1236636235 2150 dbSNP
rs1489168858 2155 dbSNP
rs890723146 2163 dbSNP
rs1176682009 2167 dbSNP
rs1481000707 2174 dbSNP
rs900867796 2185 dbSNP
rs1272776931 2193 dbSNP
rs1423395407 2199 dbSNP
rs188793522 2203 dbSNP
rs1382503250 2214 dbSNP
rs1418309022 2217 dbSNP
rs998268956 2219 dbSNP
rs1019599313 2220 dbSNP
rs753763233 2233 dbSNP
rs1292919300 2236 dbSNP
rs74963836 2239 dbSNP
rs756320068 2244 dbSNP
rs1309567795 2248 dbSNP
rs550210133 2254 dbSNP
rs1237769560 2266 dbSNP
rs1390244154 2267 dbSNP
rs1373447334 2268 dbSNP
rs76607714 2274 dbSNP
rs1299767091 2275 dbSNP
rs935776881 2275 dbSNP
rs1179470360 2276 dbSNP
rs1482979520 2276 dbSNP
rs1403064263 2277 dbSNP
rs77792170 2278 dbSNP
rs1364930386 2279 dbSNP
rs1438220059 2279 dbSNP
rs1041960518 2284 dbSNP
rs1178475382 2292 dbSNP
rs552019338 2292 dbSNP
rs79939849 2292 dbSNP
rs899229658 2293 dbSNP
rs1036416010 2299 dbSNP
rs533131314 2300 dbSNP
rs938052050 2303 dbSNP
rs1444139125 2310 dbSNP
rs1308171589 2334 dbSNP
rs564826607 2335 dbSNP
rs62575233 2336 dbSNP
rs572634895 2344 dbSNP
rs974055801 2348 dbSNP
rs982433870 2356 dbSNP
rs1252789024 2359 dbSNP
rs1260222595 2365 dbSNP
rs948029090 2370 dbSNP
rs1189584439 2378 dbSNP
rs916505065 2391 dbSNP
rs973468907 2392 dbSNP
rs963472294 2393 dbSNP
rs1479223916 2396 dbSNP
rs1490322831 2401 dbSNP
rs989289029 2403 dbSNP
rs1479814589 2408 dbSNP
rs1170699135 2409 dbSNP
rs561926117 2416 dbSNP
rs1225180929 2429 dbSNP
rs202190581 2434 dbSNP
rs145092522 2436 dbSNP
rs954951558 2442 dbSNP
rs1030993440 2447 dbSNP
rs759926064 2447 dbSNP
rs996481996 2448 dbSNP
rs1030745235 2449 dbSNP
rs1316180636 2452 dbSNP
rs142983403 2458 dbSNP
rs1017924638 2463 dbSNP
rs1221209807 2465 dbSNP
rs1344793430 2471 dbSNP
rs1219895846 2485 dbSNP
rs781358332 2490 dbSNP
rs555793040 2493 dbSNP
rs10981478 2495 dbSNP
rs116141096 2497 dbSNP
rs1382534233 2498 dbSNP
rs576729055 2506 dbSNP
rs554066175 2508 dbSNP
rs1406873720 2510 dbSNP
rs1288467077 2514 dbSNP
rs1041517694 2517 dbSNP
rs1010476595 2521 dbSNP
rs895688009 2522 dbSNP
rs1057411958 2524 dbSNP
rs533822005 2526 dbSNP
rs1400479062 2532 dbSNP
rs1299993820 2534 dbSNP
rs937268398 2537 dbSNP
rs138576518 2538 dbSNP
rs1006973637 2540 dbSNP
rs1358660610 2548 dbSNP
rs1226838639 2549 dbSNP
rs1037725926 2552 dbSNP
rs1365812776 2561 dbSNP
rs889332911 2563 dbSNP
rs1029216492 2564 dbSNP
rs1174349905 2575 dbSNP
rs1191931868 2579 dbSNP
rs755245538 2594 dbSNP
rs1430526630 2596 dbSNP
rs534152324 2603 dbSNP
rs1473541455 2606 dbSNP
rs554796697 2609 dbSNP
rs994934240 2612 dbSNP
rs1202244661 2613 dbSNP
rs1384334051 2614 dbSNP
rs537999977 2624 dbSNP
rs1036386501 2634 dbSNP
rs1358605834 2638 dbSNP
rs940824329 2644 dbSNP
rs1381589502 2651 dbSNP
rs1261513603 2654 dbSNP
rs1206137448 2662 dbSNP
rs1446043393 2675 dbSNP
rs772471149 2676 dbSNP
rs1435053668 2678 dbSNP
rs906519322 2681 dbSNP
rs1283866064 2687 dbSNP
rs1485979746 2700 dbSNP
rs1262189862 2705 dbSNP
rs1387143787 2706 dbSNP
rs1046355215 2708 dbSNP
rs1242841383 2711 dbSNP
rs1284499100 2715 dbSNP
rs948068755 2722 dbSNP
rs955042645 2731 dbSNP
rs923488866 2736 dbSNP
rs1278651001 2743 dbSNP
rs974953217 2751 dbSNP
rs1283788340 2753 dbSNP
rs570167898 2755 dbSNP
rs1324655975 2759 dbSNP
rs548474270 2761 dbSNP
rs1180210283 2764 dbSNP
rs866149526 2767 dbSNP
rs999825573 2769 dbSNP
rs936474066 2771 dbSNP
rs550271215 2772 dbSNP
rs1412889326 2773 dbSNP
rs1020449314 2785 dbSNP
rs1401384546 2786 dbSNP
rs1469304776 2824 dbSNP
rs1449284919 2827 dbSNP
rs533380930 2839 dbSNP
rs184696332 2849 dbSNP
rs539433122 2850 dbSNP
rs1307455368 2852 dbSNP
rs1135178 2853 dbSNP
rs1234553112 2856 dbSNP
rs895624392 2860 dbSNP
rs1056976776 2866 dbSNP
rs192849821 2869 dbSNP
rs144714803 2870 dbSNP
rs1194336657 2875 dbSNP
rs985118669 2878 dbSNP
rs953724641 2880 dbSNP
rs942004061 2881 dbSNP
rs1430737222 2885 dbSNP
rs1236096022 2888 dbSNP
rs1418328159 2892 dbSNP
rs1199464372 2903 dbSNP
rs1263325883 2908 dbSNP
rs1379359430 2909 dbSNP
rs907909078 2920 dbSNP
rs189990722 2924 dbSNP
rs1401140779 2929 dbSNP
rs1467331720 2939 dbSNP
rs531760109 2942 dbSNP
rs150918723 2946 dbSNP
rs1387754190 2954 dbSNP
rs545565339 2963 dbSNP
rs974884574 2967 dbSNP
rs964897733 2987 dbSNP
rs1318043267 2996 dbSNP
rs1220057358 3015 dbSNP
rs1205068338 3020 dbSNP
rs1015079579 3023 dbSNP
rs1337351238 3029 dbSNP
rs1250757428 3031 dbSNP
rs1269208572 3032 dbSNP
rs1449739594 3034 dbSNP
rs576799527 3034 dbSNP
rs553484149 3035 dbSNP
rs1479098275 3042 dbSNP
rs1478865890 3044 dbSNP
rs1168763555 3047 dbSNP
rs1372776682 3058 dbSNP
rs1046931353 3061 dbSNP
rs1313127576 3066 dbSNP
rs540559458 3074 dbSNP
rs574794875 3075 dbSNP
rs1389058040 3094 dbSNP
rs1012236681 3100 dbSNP
rs988935541 3103 dbSNP
rs959832776 3108 dbSNP
rs895173596 3109 dbSNP
rs1053702908 3110 dbSNP
rs936609922 3118 dbSNP
rs1401371913 3124 dbSNP
rs923864066 3126 dbSNP
rs1383854862 3129 dbSNP
rs1035485364 3131 dbSNP
rs76193882 3133 dbSNP
rs1245083438 3134 dbSNP
rs79746708 3135 dbSNP
rs1378008311 3144 dbSNP
rs1001379040 3148 dbSNP
rs554858147 3149 dbSNP
rs1187651136 3150 dbSNP
rs1191677367 3150 dbSNP
rs777606686 3150 dbSNP
rs1408341297 3151 dbSNP
rs1261130524 3155 dbSNP
rs1424569633 3157 dbSNP
rs1167217871 3163 dbSNP
rs756976719 3179 dbSNP
rs1367057628 3181 dbSNP
rs943885960 3193 dbSNP
rs912283624 3196 dbSNP
rs1159769736 3200 dbSNP
rs1396410619 3201 dbSNP
rs985641333 3202 dbSNP
rs1169005510 3203 dbSNP
rs953694166 3208 dbSNP
rs1383807826 3215 dbSNP
rs1183406617 3221 dbSNP
rs1443603818 3222 dbSNP
rs1243435585 3223 dbSNP
rs1380274852 3223 dbSNP
rs11545358 3232 dbSNP
rs538061347 3234 dbSNP
rs1245044397 3236 dbSNP
rs753827325 3240 dbSNP
rs1355677659 3242 dbSNP
rs1213571852 3243 dbSNP
rs1260182316 3248 dbSNP
rs919631634 3253 dbSNP
rs1483645198 3255 dbSNP
rs973617972 3256 dbSNP
rs1444397232 3263 dbSNP
rs780544105 3267 dbSNP
rs11545357 3268 dbSNP
rs1016188730 3274 dbSNP
rs1006167027 3288 dbSNP
rs1438329324 3291 dbSNP
rs1159057153 3295 dbSNP
rs963563146 3297 dbSNP
rs1344059356 3302 dbSNP
rs1466146834 3303 dbSNP
rs770198583 3305 dbSNP
rs1015610524 3306 dbSNP
rs1403528166 3317 dbSNP
rs1005023439 3321 dbSNP
rs1196333439 3330 dbSNP
rs77633222 3332 dbSNP
rs1047736204 3335 dbSNP
rs192655501 3338 dbSNP
rs1025041790 3350 dbSNP
rs1306265799 3350 dbSNP
rs1012786043 3354 dbSNP
rs1212418425 3354 dbSNP
rs1289286948 3360 dbSNP
rs1460994482 3360 dbSNP
rs895142168 3364 dbSNP
rs901934120 3372 dbSNP
rs1240371685 3375 dbSNP
rs1360424010 3379 dbSNP
rs1053755825 3388 dbSNP
rs1177112087 3391 dbSNP
rs2173196 3392 dbSNP
rs943536180 3405 dbSNP
rs925476637 3406 dbSNP
rs1335265329 3411 dbSNP
rs979639666 3412 dbSNP
rs1330091674 3416 dbSNP
rs1393612427 3429 dbSNP
rs1468917536 3430 dbSNP
rs372522096 3438 dbSNP
rs1402176184 3443 dbSNP
rs570872993 3450 dbSNP
rs1249870295 3452 dbSNP
rs945658906 3462 dbSNP
rs1297537076 3463 dbSNP
rs1368136346 3464 dbSNP
rs1220886230 3475 dbSNP
rs1281402488 3476 dbSNP
rs1322957669 3494 dbSNP
rs1260288449 3495 dbSNP
rs547467834 3501 dbSNP
rs1436418000 3505 dbSNP
rs201027908 3505 dbSNP
rs187740579 3507 dbSNP
rs1489718085 3516 dbSNP
rs902406087 3525 dbSNP
rs182289034 3531 dbSNP
rs1385399783 3532 dbSNP
rs1479854631 3536 dbSNP
rs1164650924 3537 dbSNP
rs943872117 3538 dbSNP
rs548437653 3539 dbSNP
rs979889267 3543 dbSNP
rs1049489444 3555 dbSNP
rs1438473119 3558 dbSNP
rs932436827 3560 dbSNP
rs17741539 3567 dbSNP
rs61175939 3568 dbSNP
rs35869165 3569 dbSNP
rs5900011 3570 dbSNP
rs1400750182 3575 dbSNP
rs919684595 3578 dbSNP
rs1337615279 3579 dbSNP
rs1483983542 3579 dbSNP
rs1214215800 3581 dbSNP
rs1266760151 3586 dbSNP
rs1290970503 3586 dbSNP
rs531817821 3612 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000374242.4 | 3UTR | UCAAGAAUAAAUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-655-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080691 KIAA1468 KIAA1468 2 2
MIRT095086 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT122450 SMIM13 small integral membrane protein 13 2 2
MIRT214635 SMAD5 SMAD family member 5 2 4
MIRT268267 CCND1 cyclin D1 2 2
MIRT312418 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT329008 DSTN destrin, actin depolymerizing factor 2 2
MIRT329824 PDCD4 programmed cell death 4 2 4
MIRT389635 LRRC58 leucine rich repeat containing 58 2 6
MIRT443969 FAM198B family with sequence similarity 198 member B 2 2
MIRT444080 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT444886 TMEM196 transmembrane protein 196 2 2
MIRT445506 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 4
MIRT446292 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446462 THAP1 THAP domain containing 1 2 2
MIRT446472 THUMPD3 THUMP domain containing 3 2 2
MIRT447413 MED21 mediator complex subunit 21 2 2
MIRT447491 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT448965 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT449602 INIP INTS3 and NABP interacting protein 2 2
MIRT449607 PRPF4 pre-mRNA processing factor 4 2 2
MIRT449737 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT451668 KRT8 keratin 8 2 4
MIRT452424 QDPR quinoid dihydropteridine reductase 2 2
MIRT455187 AGTRAP angiotensin II receptor associated protein 2 2
MIRT456059 SLC25A28 solute carrier family 25 member 28 2 2
MIRT456488 SERAC1 serine active site containing 1 2 2
MIRT456631 ARMCX6 armadillo repeat containing, X-linked 6 2 2
MIRT459621 SLC25A33 solute carrier family 25 member 33 2 2
MIRT461162 SLC11A2 solute carrier family 11 member 2 2 4
MIRT461990 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT463149 ZNF385A zinc finger protein 385A 2 4
MIRT463465 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463801 XPOT exportin for tRNA 2 2
MIRT464010 WDR26 WD repeat domain 26 2 2
MIRT465302 TRIB1 tribbles pseudokinase 1 2 2
MIRT468837 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT469132 RNF126 ring finger protein 126 2 2
MIRT469244 RHOB ras homolog family member B 2 2
MIRT472414 NCKAP1 NCK associated protein 1 2 2
MIRT472432 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT472808 MTMR12 myotubularin related protein 12 2 2
MIRT477893 DVL3 dishevelled segment polarity protein 3 2 4
MIRT477963 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT479258 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479718 CCNF cyclin F 2 2
MIRT480231 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT482600 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483096 TFPI tissue factor pathway inhibitor 2 2
MIRT484644 TBC1D5 TBC1 domain family member 5 2 4
MIRT488899 CLDND1 claudin domain containing 1 2 2
MIRT491954 VPS52 VPS52, GARP complex subunit 2 2
MIRT496937 LBR lamin B receptor 2 2
MIRT498546 TMEM30B transmembrane protein 30B 2 2
MIRT501778 NRBF2 nuclear receptor binding factor 2 2 6
MIRT516286 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT516351 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT516751 ZNF100 zinc finger protein 100 2 2
MIRT517939 ZNF431 zinc finger protein 431 2 4
MIRT518295 ZNF514 zinc finger protein 514 2 4
MIRT518515 CASP10 caspase 10 2 2
MIRT519017 NOA1 nitric oxide associated 1 2 2
MIRT519171 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519470 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT521029 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521251 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT521682 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT529386 SKP1 S-phase kinase associated protein 1 2 2
MIRT545507 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT549655 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT551041 CTSB cathepsin B 2 4
MIRT551441 ZNF490 zinc finger protein 490 2 4
MIRT554778 RHEBP1 RHEB pseudogene 1 2 4
MIRT565793 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT566727 MSL2 MSL complex subunit 2 2 2
MIRT574668 HNRNPDL heterogeneous nuclear ribonucleoprotein D like 2 2
MIRT610128 DENND5B DENN domain containing 5B 2 2
MIRT624919 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT641830 TRIM71 tripartite motif containing 71 2 2
MIRT662165 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT667150 NRXN3 neurexin 3 2 2
MIRT689085 ADNP2 ADNP homeobox 2 2 2
MIRT696322 DCAF15 DDB1 and CUL4 associated factor 15 2 2
MIRT699062 SNX4 sorting nexin 4 2 2
MIRT703229 GOLGA1 golgin A1 2 2
MIRT705743 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT706087 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT709288 MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 2 2
MIRT711457 RNF145 ring finger protein 145 2 2
MIRT714708 PPP3CC protein phosphatase 3 catalytic subunit gamma 2 2
MIRT719871 CYP4F11 cytochrome P450 family 4 subfamily F member 11 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-655 Gefitinib approved 123631 Quantitative real-time PCR lung adenocarcinoma cells 24258346 2014 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-655 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-655 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-655 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-655-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-655-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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