pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PRPF4   
Synonyms HPRP4, HPRP4P, PRP4, Prp4p, RP70, SNRNP60
Description pre-mRNA processing factor 4
Transcript NM_004697   
Expression
Putative miRNA Targets on PRPF4
3'UTR of PRPF4
(miRNA target sites are highlighted)
>PRPF4|NM_004697|3'UTR
   1 ATGACAATGGGAAAAGGACTTGAACCTCAAGCTCTCTCTAAGGAGCTGTTTTCCTCAAACGAGAAGAATTGAAGTGTTTA
  81 GTTCTATCATGTTTTCTGCCAATTACCATGCATAGACCCTCAGTAGAATTGGATTTCCATGTCAGCCCCCACTCCAGGAA
 161 GGCAGCCCAATCCCTAGGTGATGGGGAACCCCTCTCACGGTTGAAAATTTATTACCTTTTTACGCCCTGCCACGAACTGT
 241 GTAGACATTGTTTTTATTAATCTTTTGTTTGGCCGGGCGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGA
 321 GGTGGGTAGATCGCTTGAGCTCAGGAGTTCAAGACGAGCCTGGGCAACATGGCAAATGCCGTCTCTGCAAAAAAATACTA
 401 AAATTAGCTGGTCGCGGTGGCTTCTGCCTGTGATTCCGGCTACTTGGGAGGCTGAGGTGGGAGGGATTGCTTAAGCCTGG
 481 GAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTCTAGCCTGTGTGACAGAGCAAGACCCTGTCTCAAAAAAA
 561 AAAAAAATTTGTTCGAATGCCTTATAGCCTTCCTCACAGCACCCAGGATTGTGACTGACTCTGCATTTTTAATTCTTGAA
 641 ACTTGGCTTTCCATAACATGGTACATGCTTCAGGACTACATATGACCCAGAGAGCAAGGTGGCTGAACTATAGTCTGGAA
 721 GCCCTCAGGTAAAGAGGCACATCTCACCACTCATTGGTTAAACAATGCATCATAGCGAGCACTTTTCCTTTCCCTGGAGA
 801 ATGGGATGTGAAGCAGTAGACCGCAGCCACGCCGATGGTTATACAGTGAAGAAGACTTCACCTCTTCCTATTGAGTTTGC
 881 TTGGAATGCTGACAGCATCAGGCAACTCTGAACTGAACATTTGCTTTGTCAGAAAATATCTTTTTTTTTACTTTGAAGTT
 961 TGGCAACCTTCATGTTACCCCAAAGCAAAACCATTGTGTCAGGAGTCAAACAAATGTTTAGAAAGCAAACATGACGTCTC
1041 TATTGTACAACCTCCTTTCTCTTGGCTGTTTAAAGGATGTACTTCGTGTATTAAAGGGTACTTTATGTTGAAGTAACGAA
1121 AAAACCCTAATGGGTGTTCCTAAACCTAAACCTTTTCTTTATTCCACATTTGCTACGGTAAAATCCTGTTACAAAACTAC
1201 CCTATAAAGAATTATTTTCTATAGTTAAGCATTTTCTGAATCCTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCGUUCUGGGGCAGAGAUUu 5'
            ||||||||||:||||| || 
Target 5' agAGCAAGACCCTGTCTCAAAa 3'
536 - 557 164.00 -33.80
2
miRNA  3' ucucGUUCUGGGGCAGAGAUUu 5'
              ||||  |:| ||||||| 
Target 5' acctCAAG--CTC-TCTCTAAg 3'
24 - 42 153.00 -13.10
3
miRNA  3' ucUCGUUCUGGG--GCAGAGAUuu 5'
            ||||| || :  ||||||||  
Target 5' aaAGCAA-ACATGACGTCTCTAtt 3'
1022 - 1044 145.00 -16.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30480731 17 COSMIC
COSN31555565 29 COSMIC
COSN14366449 61 COSMIC
COSN30512487 70 COSMIC
COSN21866546 82 COSMIC
COSN31530622 85 COSMIC
COSN31593110 90 COSMIC
COSN15819858 113 COSMIC
COSN24839463 120 COSMIC
COSN9696024 276 COSMIC
COSN4924712 303 COSMIC
COSN8118672 322 COSMIC
COSN26663338 524 COSMIC
COSN6376446 1176 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs375210850 5 dbSNP
rs192925243 8 dbSNP
rs749505605 9 dbSNP
rs771197676 12 dbSNP
rs573626543 21 dbSNP
rs1340395536 22 dbSNP
rs527672381 32 dbSNP
rs1302711214 33 dbSNP
rs1364750622 34 dbSNP
rs1433281710 36 dbSNP
rs183649449 37 dbSNP
rs368336819 40 dbSNP
rs979983577 46 dbSNP
rs571221790 49 dbSNP
rs1396783715 59 dbSNP
rs750421815 61 dbSNP
rs1186919140 62 dbSNP
rs1316091425 62 dbSNP
rs1476252012 63 dbSNP
rs1244667234 75 dbSNP
rs1222286034 82 dbSNP
rs111527853 85 dbSNP
rs756049124 86 dbSNP
rs779724801 87 dbSNP
rs973222830 90 dbSNP
rs1317874655 91 dbSNP
rs2418249 101 dbSNP
rs552150384 106 dbSNP
rs1221784208 107 dbSNP
rs1274554438 109 dbSNP
rs952720436 110 dbSNP
rs1437464153 112 dbSNP
rs1252855613 113 dbSNP
rs1481767148 114 dbSNP
rs565394445 115 dbSNP
rs530945489 116 dbSNP
rs1171029976 119 dbSNP
rs754655198 120 dbSNP
rs550669772 125 dbSNP
rs1424755598 130 dbSNP
rs1043550999 133 dbSNP
rs911485153 139 dbSNP
rs1176287585 140 dbSNP
rs567771283 149 dbSNP
rs1039922693 152 dbSNP
rs1207241658 165 dbSNP
rs942920472 167 dbSNP
rs1278378060 178 dbSNP
rs1041238859 179 dbSNP
rs901470319 182 dbSNP
rs998298600 185 dbSNP
rs1025784364 189 dbSNP
rs1298742838 194 dbSNP
rs774831354 197 dbSNP
rs922746663 199 dbSNP
rs188349748 200 dbSNP
rs1396565411 201 dbSNP
rs1156448108 210 dbSNP
rs1408080637 215 dbSNP
rs1178372718 222 dbSNP
rs565582618 224 dbSNP
rs1237371347 225 dbSNP
rs80045325 229 dbSNP
rs1212093886 234 dbSNP
rs1486844304 235 dbSNP
rs1422235739 236 dbSNP
rs778594452 240 dbSNP
rs891511953 247 dbSNP
rs1354596455 248 dbSNP
rs1011254596 263 dbSNP
rs1296077065 266 dbSNP
rs1042721795 273 dbSNP
rs1372428707 274 dbSNP
rs1228605450 275 dbSNP
rs747380120 276 dbSNP
rs1001845953 278 dbSNP
rs771347959 280 dbSNP
rs1296044961 284 dbSNP
rs1418729797 285 dbSNP
rs1345365490 287 dbSNP
rs781496297 291 dbSNP
rs1421509426 294 dbSNP
rs1413762941 296 dbSNP
rs868273053 297 dbSNP
rs895637698 306 dbSNP
rs117673249 307 dbSNP
rs1275510890 308 dbSNP
rs1486326977 308 dbSNP
rs1262687001 311 dbSNP
rs1025693582 313 dbSNP
rs796113074 317 dbSNP
rs952767644 319 dbSNP
rs770224704 320 dbSNP
rs945871558 325 dbSNP
rs1233830396 326 dbSNP
rs1357226715 327 dbSNP
rs775602246 333 dbSNP
rs1018211502 334 dbSNP
rs1385270406 337 dbSNP
rs35653096 340 dbSNP
rs1483792356 341 dbSNP
rs964354034 347 dbSNP
rs977400292 353 dbSNP
rs922833015 356 dbSNP
rs577825574 357 dbSNP
rs988274847 369 dbSNP
rs537071974 376 dbSNP
rs947101814 377 dbSNP
rs1193451987 379 dbSNP
rs1042773491 381 dbSNP
rs1167879822 382 dbSNP
rs1264201161 389 dbSNP
rs1353500043 390 dbSNP
rs1453147856 395 dbSNP
rs1273907766 400 dbSNP
rs1338506708 408 dbSNP
rs905519217 414 dbSNP
rs1047766880 415 dbSNP
rs181834643 416 dbSNP
rs116421819 417 dbSNP
rs1057421680 435 dbSNP
rs1006169326 438 dbSNP
rs1016013052 442 dbSNP
rs1212823475 451 dbSNP
rs542786196 497 dbSNP
rs1183400703 503 dbSNP
rs898939584 506 dbSNP
rs1033987506 507 dbSNP
rs115864367 511 dbSNP
rs1170582258 513 dbSNP
rs1021904814 520 dbSNP
rs993977476 522 dbSNP
rs1025407033 526 dbSNP
rs992718015 527 dbSNP
rs1205772327 528 dbSNP
rs1261713936 531 dbSNP
rs1253822400 537 dbSNP
rs888552383 538 dbSNP
rs1020627520 554 dbSNP
rs1420530312 554 dbSNP
rs80113344 554 dbSNP
rs879861650 554 dbSNP
rs78376128 555 dbSNP
rs79538417 556 dbSNP
rs967227150 561 dbSNP
rs1005577780 563 dbSNP
rs1461136202 564 dbSNP
rs979040332 565 dbSNP
rs1189849057 566 dbSNP
rs1303667212 570 dbSNP
rs926018584 571 dbSNP
rs573482359 575 dbSNP
rs1184205271 576 dbSNP
rs1018307918 582 dbSNP
rs942761476 589 dbSNP
rs1465829368 591 dbSNP
rs1395971661 597 dbSNP
rs1470043213 604 dbSNP
rs1178132084 606 dbSNP
rs975489536 606 dbSNP
rs768812863 607 dbSNP
rs1156447178 614 dbSNP
rs545579052 617 dbSNP
rs933995194 619 dbSNP
rs565590250 629 dbSNP
rs976739538 632 dbSNP
rs138083977 633 dbSNP
rs1428757547 636 dbSNP
rs1280687862 637 dbSNP
rs1236051734 639 dbSNP
rs956948772 641 dbSNP
rs1350982809 642 dbSNP
rs1269713797 643 dbSNP
rs1038578072 659 dbSNP
rs1338089268 666 dbSNP
rs866403573 670 dbSNP
rs1044110 676 dbSNP
rs371701784 679 dbSNP
rs1414613797 684 dbSNP
rs1001261078 695 dbSNP
rs1315096683 700 dbSNP
rs1225643973 709 dbSNP
rs915399982 712 dbSNP
rs947155620 714 dbSNP
rs551237681 715 dbSNP
rs978506453 719 dbSNP
rs1471180130 722 dbSNP
rs149034913 723 dbSNP
rs937013703 726 dbSNP
rs1185329789 741 dbSNP
rs1020196264 742 dbSNP
rs967720380 747 dbSNP
rs1212694082 758 dbSNP
rs978602602 761 dbSNP
rs1056773405 765 dbSNP
rs1032785315 766 dbSNP
rs774660042 767 dbSNP
rs1445817097 777 dbSNP
rs375986552 778 dbSNP
rs1356595815 782 dbSNP
rs1241076545 789 dbSNP
rs145714590 794 dbSNP
rs955399541 795 dbSNP
rs1480478312 796 dbSNP
rs1402593538 816 dbSNP
rs1388677790 817 dbSNP
rs566585301 823 dbSNP
rs369630939 824 dbSNP
rs983213408 825 dbSNP
rs1189850086 835 dbSNP
rs1426702376 839 dbSNP
rs908780536 846 dbSNP
rs1193446952 847 dbSNP
rs1448302699 848 dbSNP
rs534523701 871 dbSNP
rs1212468125 880 dbSNP
rs1336145352 890 dbSNP
rs186373014 892 dbSNP
rs1158892265 898 dbSNP
rs1005630164 903 dbSNP
rs138744603 907 dbSNP
rs1317536190 924 dbSNP
rs1366341265 936 dbSNP
rs1329516125 941 dbSNP
rs926739191 941 dbSNP
rs1040194460 950 dbSNP
rs761905590 951 dbSNP
rs1395194989 952 dbSNP
rs1055543206 956 dbSNP
rs1408066698 960 dbSNP
rs998607298 968 dbSNP
rs534354204 981 dbSNP
rs767425303 985 dbSNP
rs1250706225 1002 dbSNP
rs561682674 1008 dbSNP
rs1348970498 1009 dbSNP
rs76280577 1010 dbSNP
rs1255506188 1014 dbSNP
rs3183794 1032 dbSNP
rs1223782606 1036 dbSNP
rs760754714 1037 dbSNP
rs766417599 1041 dbSNP
rs189605685 1052 dbSNP
rs570714797 1062 dbSNP
rs757441409 1076 dbSNP
rs1291134999 1079 dbSNP
rs1274180441 1082 dbSNP
rs375276606 1083 dbSNP
rs557213116 1086 dbSNP
rs1022511108 1087 dbSNP
rs968211991 1091 dbSNP
rs1329320152 1107 dbSNP
rs111808368 1110 dbSNP
rs1000033229 1116 dbSNP
rs1224013707 1118 dbSNP
rs1266373144 1119 dbSNP
rs1490095365 1121 dbSNP
rs1411414929 1127 dbSNP
rs1392931599 1128 dbSNP
rs10117320 1135 dbSNP
rs11789755 1137 dbSNP
rs181711662 1140 dbSNP
rs1174926501 1146 dbSNP
rs1029685318 1158 dbSNP
rs955671670 1160 dbSNP
rs572942090 1161 dbSNP
rs982900757 1166 dbSNP
rs908514734 1169 dbSNP
rs1385724464 1176 dbSNP
rs544885071 1177 dbSNP
rs1211872551 1178 dbSNP
rs1350249667 1193 dbSNP
rs916905834 1213 dbSNP
rs974287064 1222 dbSNP
rs929928093 1223 dbSNP
rs1301326486 1225 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucucGUUCUGGGGCAGAGAUUu 5'
              ||||  |:| ||||||| 
Target 5' ---uCAAG--CUC-UCUCUAAg 3'
1 - 16
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_004697 | 3UTR | CUCAAGCUCUCUCUAAGGAGCUGUUUUCCUCAAACGAGAAGAAUUGAAGUGUUUAGUUCUAUCAUGUUUUCUGCCAAUUACCAUGCAUAGACCCUCAGUAGAAUUGGAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_004697 | 3UTR | UGAACCUCAAGCUCUCUCUAAGGAGCUGUUUUCCUCAAACGAGAAGAAUUGAAGUGUUUAGUUCUAUCAUGUUUUCUGCCAAUUACCAUGCAUAGACCCUCAGUAGAAUUGGAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_004697 | 3UTR | CUCAAGCUCUCUCUAAGGAGCUGUUUUCCUCAAACGAGAAGAAUUGAAGUGUUUAGUUCUAUCAUGUUUUCUGCCAAUUACCAUGCAUAGACCCUCAGUAGAAUUGGAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_004697 | 3UTR | CUCUAAGGAGCUGUUUUCCUCAAACGAGAAGAAUUGAAGUGUUUAGUUCUAUCAUGUUUUCUGCCAAUUACCAUGCAUAGACCCUCAGUAGAAUUGGAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_004697 | 3UTR | AGCUCUCUCUAAGGAGCUGUUUUCCUCAAACGAGAAGAAUUGAAGUGUUUAGUUCUAUCAUGUUUUCUGCCAAUUACCAUGCAUAGACCCUCAGUAGAAUUGGAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_004697 | 3UTR | CUCUAAGGAGCUGUUUUCCUCAAACGAGAAGAAUUGAAGUGUUUAGUUCUAUCAUGUUUUCUGCCAAUUACCAUGCAUAGACCCUCAGUAGAAUUGGAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000374199.4 | 3UTR | UCAAGCUCUCUCUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells 0.471 1.2e-2 0.501 7.4e-3 23 Click to see details
GSE26953 Aortic valvular endothelial cells 0.219 1.5e-1 0.082 3.5e-1 24 Click to see details
GSE28544 Breast cancer 0.216 1.6e-1 0.219 1.5e-1 24 Click to see details
GSE32688 Pancreatic cancer -0.151 2.0e-1 -0.010 4.8e-1 32 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.159 2.2e-1 0.143 2.5e-1 25 Click to see details
GSE38226 Liver fibrosis 0.16 2.4e-1 0.003 4.9e-1 21 Click to see details
GSE28260 Renal cortex and medulla -0.131 3.3e-1 -0.236 2.2e-1 13 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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