miRTarBase - #MIRT449647


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pre-miRNA Information
pre-miRNA hsa-mir-3650   
Genomic Coordinates chr5: 38557502 - 38557561
Description Homo sapiens miR-3650 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3650
Sequence 4| AGGUGUGUCUGUAGAGUCC |22
Evidence Experimental
Experiments 454
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CASS4   
Synonyms C20orf32, CAS4, HEFL, HEPL
Description Cas scaffolding protein family member 4
Transcript NM_001164114   
Other Transcripts NM_001164115 , NM_001164116 , NM_020356   
Expression
Putative miRNA Targets on CASS4
3'UTR of CASS4
(miRNA target sites are highlighted)		 
>CASS4|NM_001164114|3'UTR
   1 GGACTGTCTACCTCCCTTCCTCCTCTGCTCACCTCTCAGCTTCACACCCACAACTTGTGCAACTCTGCCCTATGGGAAAA
  81 GCCAGCCGGGGCATACACCAATGAGCTGAAACAGACCTGGTGCCCAAAGCTGGTAGTACCAAGTGGCTAAGCAACCCCAG
 161 GGCATTGACTTACCCCGCAGGGGGTCAGGAAAGAGAGTCAGGTATGAGGTAAAGACCTTGTGAAGTTTAGCATATATGGA
 241 GTATGCAGTATCAGCTTGAAGTGACTTCGCAGAAATAATATTTTATATTGATTAAATGTGTGCATGTTTTGTTTGTTTTT
 321 TGAGACAAAGTCTCACTCTGTCACACAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCCGCCTTCTGGGT
 401 TGAAGCAATTCTCCCGCCTCAGCCTCCAGAGTAGCTGGTACTACAGGTGTGCGCCACCATGCCCAGCTAATTTTTGTATT
 481 TTTTTTTAATGAAAGGTCTCACATATTTATTACTGAACCCAGCCAACCAATGCATTCATAACAGATTCAGAAAGAAAAAA
 561 TATATTCCCAATAAAACATGTACAATTCTCCAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccuGAGAUGUC--UGUGUGGa 5'
             |||| |||   |||||| 
Target 5' cacCTCT-CAGCTTCACACCc 3'
 30 - 49 125.00 -15.60
2 
miRNA  3' ccugagaugucUGUGUGGa 5'
                     |:||||| 
Target 5' ccagccggggcATACACCa 3'
 82 - 100 124.00 -9.81
3 
miRNA  3' ccUGAGAUGUCUGUGUgga 5'
            |||||::  |||||   
Target 5' tcACTCTGT-CACACAggc 3'
 333 - 350 116.00 -11.42
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30485378 23 COSMIC
COSN30485403 24 COSMIC
COSN27177463 171 COSMIC
COSN25775738 365 COSMIC
COSN31559341 589 COSMIC
COSN24525733 599 COSMIC
COSN21171750 724 COSMIC
COSN24391030 776 COSMIC
COSN24407471 930 COSMIC
COSN17462659 964 COSMIC
COSN10018556 1116 COSMIC
COSN8899972 1310 COSMIC
COSN9144165 1319 COSMIC
COSN8611144 1364 COSMIC
COSN27666238 1490 COSMIC
COSN13869004 1552 COSMIC
COSN24663939 1568 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1359241049 1 dbSNP
rs201872765 3 dbSNP
rs369536191 5 dbSNP
rs567507715 9 dbSNP
rs1426432340 11 dbSNP
rs149315196 12 dbSNP
rs1050925158 16 dbSNP
rs761469998 20 dbSNP
rs376536924 21 dbSNP
rs1331042884 23 dbSNP
rs762500030 24 dbSNP
rs1449562959 28 dbSNP
rs992637097 31 dbSNP
rs1338177460 33 dbSNP
rs1243492911 38 dbSNP
rs766842414 46 dbSNP
rs1357972295 49 dbSNP
rs4811697 54 dbSNP
rs1156898287 58 dbSNP
rs572594122 64 dbSNP
rs1276474068 71 dbSNP
rs577395858 73 dbSNP
rs1045470676 74 dbSNP
rs1312749008 83 dbSNP
rs1388473629 84 dbSNP
rs899226975 88 dbSNP
rs1454033278 89 dbSNP
rs905215811 93 dbSNP
rs1339097669 94 dbSNP
rs1381091515 98 dbSNP
rs1355878273 100 dbSNP
rs546365362 108 dbSNP
rs1307206456 113 dbSNP
rs1424352129 117 dbSNP
rs760678234 124 dbSNP
rs1166013690 128 dbSNP
rs112185885 140 dbSNP
rs577934006 141 dbSNP
rs1481672858 157 dbSNP
rs993076041 165 dbSNP
rs1222031098 166 dbSNP
rs901412740 171 dbSNP
rs1205559619 175 dbSNP
rs191568729 177 dbSNP
rs137858744 178 dbSNP
rs997145576 190 dbSNP
rs1028386333 193 dbSNP
rs1389123608 201 dbSNP
rs766457723 213 dbSNP
rs980265762 225 dbSNP
rs529507123 226 dbSNP
rs1308186466 232 dbSNP
rs952440566 233 dbSNP
rs1364088121 238 dbSNP
rs1458836884 255 dbSNP
rs1363685345 256 dbSNP
rs925712508 264 dbSNP
rs1157574893 269 dbSNP
rs983763444 270 dbSNP
rs1412879823 273 dbSNP
rs1198951537 274 dbSNP
rs1489936043 279 dbSNP
rs1266474141 285 dbSNP
rs1211374343 288 dbSNP
rs554806136 294 dbSNP
rs1488696276 301 dbSNP
rs1421121772 304 dbSNP
rs377435787 307 dbSNP
rs1260013057 331 dbSNP
rs1236792362 336 dbSNP
rs988443662 338 dbSNP
rs1180089357 342 dbSNP
rs912898067 347 dbSNP
rs1330593859 365 dbSNP
rs933933732 366 dbSNP
rs1222500072 367 dbSNP
rs1343295553 368 dbSNP
rs1015272727 371 dbSNP
rs1470569519 376 dbSNP
rs1051439951 380 dbSNP
rs1384709033 384 dbSNP
rs889682541 390 dbSNP
rs1455859540 391 dbSNP
rs1389447940 397 dbSNP
rs1316475415 401 dbSNP
rs1465822839 415 dbSNP
rs142469486 416 dbSNP
rs1479516902 417 dbSNP
rs1431661130 426 dbSNP
rs1199864348 429 dbSNP
rs1433484285 430 dbSNP
rs1038170685 433 dbSNP
rs899255244 434 dbSNP
rs1203296558 435 dbSNP
rs1389380494 453 dbSNP
rs1202439250 454 dbSNP
rs1287154079 454 dbSNP
rs1320830935 455 dbSNP
rs1276186918 458 dbSNP
rs994916789 461 dbSNP
rs1345642075 462 dbSNP
rs1293941347 471 dbSNP
rs1026356728 478 dbSNP
rs917130194 479 dbSNP
rs970361874 479 dbSNP
rs1336678261 480 dbSNP
rs980072758 490 dbSNP
rs925878186 494 dbSNP
rs1173368297 497 dbSNP
rs1356226819 515 dbSNP
rs936664155 518 dbSNP
rs1461721435 528 dbSNP
rs559492456 529 dbSNP
rs1281254262 530 dbSNP
rs1014541965 532 dbSNP
rs1053791760 539 dbSNP
rs1024988855 540 dbSNP
rs970312005 559 dbSNP
rs1002112535 563 dbSNP
rs868283422 569 dbSNP
rs945476989 580 dbSNP
rs1280198606 581 dbSNP
rs1200655183 584 dbSNP
rs1033146298 589 dbSNP
rs1041230123 590 dbSNP
rs528206656 599 dbSNP
rs879934458 600 dbSNP
rs1366398805 601 dbSNP
rs1203326514 613 dbSNP
rs997492044 629 dbSNP
rs988503097 642 dbSNP
rs760063106 647 dbSNP
rs1480775316 652 dbSNP
rs912929449 653 dbSNP
rs1391008507 657 dbSNP
rs551174709 660 dbSNP
rs1170738886 667 dbSNP
rs1431340749 669 dbSNP
rs571250552 672 dbSNP
rs1015220297 681 dbSNP
rs530414283 685 dbSNP
rs550553860 689 dbSNP
rs1433133295 690 dbSNP
rs1187595829 691 dbSNP
rs1436750253 695 dbSNP
rs567569668 696 dbSNP
rs756812320 697 dbSNP
rs536522768 698 dbSNP
rs751281257 698 dbSNP
rs942600929 700 dbSNP
rs1038647206 709 dbSNP
rs1244388166 730 dbSNP
rs35324103 735 dbSNP
rs1427390961 736 dbSNP
rs919753190 739 dbSNP
rs1307080777 744 dbSNP
rs1013983140 750 dbSNP
rs765855244 759 dbSNP
rs930737423 766 dbSNP
rs1047827098 769 dbSNP
rs765604840 776 dbSNP
rs77584750 777 dbSNP
rs1410731697 785 dbSNP
rs756918541 789 dbSNP
rs867945471 795 dbSNP
rs1302354637 796 dbSNP
rs969890471 803 dbSNP
rs1415818602 804 dbSNP
rs780914643 808 dbSNP
rs1163787259 817 dbSNP
rs1215153315 818 dbSNP
rs1409213289 825 dbSNP
rs1183878812 827 dbSNP
rs1045692974 828 dbSNP
rs906115405 835 dbSNP
rs1268582249 837 dbSNP
rs1220666578 846 dbSNP
rs1305599467 853 dbSNP
rs1001784783 862 dbSNP
rs112634823 863 dbSNP
rs369992632 868 dbSNP
rs182966397 873 dbSNP
rs1224743421 889 dbSNP
rs1229213473 894 dbSNP
rs1010332206 904 dbSNP
rs1345076977 905 dbSNP
rs139719252 909 dbSNP
rs1433962312 909 dbSNP
rs989472425 911 dbSNP
rs374510167 912 dbSNP
rs986882281 913 dbSNP
rs910883615 915 dbSNP
rs987817007 917 dbSNP
rs1160792160 922 dbSNP
rs1168355225 926 dbSNP
rs1385405762 929 dbSNP
rs111416975 935 dbSNP
rs767140530 936 dbSNP
rs1321004013 937 dbSNP
rs932812724 939 dbSNP
rs1348834330 943 dbSNP
rs1431361134 944 dbSNP
rs750106961 961 dbSNP
rs543423808 968 dbSNP
rs755629624 969 dbSNP
rs556892741 970 dbSNP
rs1209389821 973 dbSNP
rs888670240 973 dbSNP
rs1046905131 974 dbSNP
rs907960112 975 dbSNP
rs950127673 978 dbSNP
rs1315488259 985 dbSNP
rs1297431923 987 dbSNP
rs1005798589 1000 dbSNP
rs1362891245 1002 dbSNP
rs1322491635 1005 dbSNP
rs1457254496 1012 dbSNP
rs1046182195 1018 dbSNP
rs905859580 1025 dbSNP
rs773879491 1026 dbSNP
rs558387427 1028 dbSNP
rs1239857415 1050 dbSNP
rs574018259 1053 dbSNP
rs1426274347 1058 dbSNP
rs117271682 1064 dbSNP
rs896855701 1075 dbSNP
rs1287779480 1076 dbSNP
rs1321252407 1082 dbSNP
rs1216620313 1093 dbSNP
rs1460928784 1096 dbSNP
rs1013888686 1102 dbSNP
rs1024037724 1104 dbSNP
rs1463943298 1107 dbSNP
rs796357592 1110 dbSNP
rs6099152 1111 dbSNP
rs528657488 1112 dbSNP
rs1010363541 1125 dbSNP
rs753122603 1126 dbSNP
rs756477164 1128 dbSNP
rs1446044900 1130 dbSNP
rs1161146603 1133 dbSNP
rs1412646818 1134 dbSNP
rs1300610724 1135 dbSNP
rs6099153 1140 dbSNP
rs1169328756 1142 dbSNP
rs1160658621 1148 dbSNP
rs564838197 1149 dbSNP
rs1007976939 1155 dbSNP
rs1218735876 1160 dbSNP
rs1392492810 1167 dbSNP
rs1169772880 1168 dbSNP
rs1018379302 1169 dbSNP
rs530579589 1172 dbSNP
rs150657793 1182 dbSNP
rs567236982 1186 dbSNP
rs529705261 1188 dbSNP
rs530048018 1189 dbSNP
rs1337144302 1194 dbSNP
rs1384775369 1204 dbSNP
rs1450444087 1205 dbSNP
rs1276580928 1207 dbSNP
rs546892945 1211 dbSNP
rs1229480384 1212 dbSNP
rs966669582 1212 dbSNP
rs6099154 1216 dbSNP
rs922671800 1218 dbSNP
rs1297250030 1222 dbSNP
rs6099155 1226 dbSNP
rs1327691120 1227 dbSNP
rs552309903 1233 dbSNP
rs1264119173 1236 dbSNP
rs571656143 1253 dbSNP
rs1367182271 1262 dbSNP
rs1167540292 1265 dbSNP
rs985637659 1266 dbSNP
rs1407434322 1273 dbSNP
rs1462895340 1277 dbSNP
rs982619187 1283 dbSNP
rs755268905 1298 dbSNP
rs1236463743 1304 dbSNP
rs1488043913 1321 dbSNP
rs537122748 1326 dbSNP
rs1251158451 1329 dbSNP
rs556952130 1336 dbSNP
rs917748583 1339 dbSNP
rs1321784372 1340 dbSNP
rs1287220480 1348 dbSNP
rs1178419893 1353 dbSNP
rs375551265 1358 dbSNP
rs1456611757 1362 dbSNP
rs1351902074 1375 dbSNP
rs981537085 1379 dbSNP
rs6099156 1393 dbSNP
rs747250147 1398 dbSNP
rs949684686 1401 dbSNP
rs1054346332 1402 dbSNP
rs1458917364 1412 dbSNP
rs1344663621 1416 dbSNP
rs1156983806 1421 dbSNP
rs371137656 1424 dbSNP
rs1045818703 1429 dbSNP
rs1198973326 1434 dbSNP
rs1432384757 1435 dbSNP
rs770954426 1436 dbSNP
rs753154917 1440 dbSNP
rs893399927 1458 dbSNP
rs1225094828 1465 dbSNP
rs16979949 1467 dbSNP
rs188849803 1469 dbSNP
rs140007394 1477 dbSNP
rs149838989 1481 dbSNP
rs1232159613 1484 dbSNP
rs1227885389 1487 dbSNP
rs1284441758 1499 dbSNP
rs1303927143 1500 dbSNP
rs1387741669 1506 dbSNP
rs1020189298 1513 dbSNP
rs776730452 1520 dbSNP
rs1319147253 1521 dbSNP
rs147878767 1526 dbSNP
rs995172596 1531 dbSNP
rs575259079 1533 dbSNP
rs1199031687 1537 dbSNP
rs1267050907 1540 dbSNP
rs1375695809 1548 dbSNP
rs544305131 1553 dbSNP
rs1200679323 1555 dbSNP
rs1030109257 1557 dbSNP
rs773139710 1562 dbSNP
rs67266356 1563 dbSNP
rs985978168 1565 dbSNP
rs529709024 1566 dbSNP
rs982693008 1567 dbSNP
rs1024836789 1568 dbSNP
rs111689421 1576 dbSNP
rs970600116 1576 dbSNP
rs62209459 1582 dbSNP
rs1296043902 1584 dbSNP
rs878876339 1588 dbSNP
rs1477031786 1592 dbSNP
rs950385870 1610 dbSNP
rs1333643221 1614 dbSNP
rs775917696 1616 dbSNP
rs1396992278 1617 dbSNP
rs1404551536 1619 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ccugAGAUGUCUGUGUGGa 5'
              || | : ||||||| 
Target 5' ----UC-AAGCACACACCa 3'
 		1 - 14
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000371336.3 | 3UTR | UCAAGCACACACCACAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
121 hsa-miR-3650 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075340 SF3B3 splicing factor 3b subunit 3 2 2
MIRT302326 ACP1 acid phosphatase 1, soluble 2 2
MIRT395212 PRKCB protein kinase C beta 2 2
MIRT404446 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT449647 CASS4 Cas scaffolding protein family member 4 2 2
MIRT451262 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452113 IFITM1 interferon induced transmembrane protein 1 2 2
MIRT452723 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 4
MIRT452982 CABP4 calcium binding protein 4 2 2
MIRT453966 ATP13A4 ATPase 13A4 2 6
MIRT454112 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT454343 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454405 AKAP5 A-kinase anchoring protein 5 2 2
MIRT456224 LIX1L limb and CNS expressed 1 like 2 4
MIRT456232 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 6
MIRT458505 GSG2 histone H3 associated protein kinase 2 6
MIRT461653 G6PC glucose-6-phosphatase catalytic subunit 2 2
MIRT461933 TNFSF14 TNF superfamily member 14 2 2
MIRT462734 EFNB1 ephrin B1 2 2
MIRT463817 XKR4 XK related 4 2 2
MIRT463833 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT464928 TXLNA taxilin alpha 2 2
MIRT465874 TMEM43 transmembrane protein 43 2 4
MIRT467753 SLC35F1 solute carrier family 35 member F1 2 4
MIRT468688 SEC22C SEC22 homolog C, vesicle trafficking protein 2 4
MIRT469453 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT471931 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT474715 KIF13A kinesin family member 13A 2 6
MIRT475396 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT475681 HHIPL1 HHIP like 1 2 2
MIRT477016 FAM217B family with sequence similarity 217 member B 2 2
MIRT477073 FAM208A family with sequence similarity 208 member A 2 4
MIRT478172 DENND5B DENN domain containing 5B 2 2
MIRT478995 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479700 CCNT1 cyclin T1 2 2
MIRT482784 STIM1 stromal interaction molecule 1 2 2
MIRT488682 RAD23B RAD23 homolog B, nucleotide excision repair protein 2 2
MIRT493179 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT494243 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT508775 GSG1 germ cell associated 1 2 2
MIRT509555 ACTG1 actin gamma 1 2 4
MIRT510305 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510976 PFN2 profilin 2 2 6
MIRT517860 NCAPD2 non-SMC condensin I complex subunit D2 2 4
MIRT519451 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT521340 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT522478 MIPOL1 mirror-image polydactyly 1 2 4
MIRT522584 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT525629 NUP93 nucleoporin 93 2 4
MIRT529240 PORCN porcupine O-acyltransferase 2 2
MIRT529788 AP4S1 adaptor related protein complex 4 sigma 1 subunit 2 2
MIRT530567 ABHD15 abhydrolase domain containing 15 2 2
MIRT535784 MTRNR2L11 MT-RNR2-like 11 2 6
MIRT536819 HMGA1 high mobility group AT-hook 1 2 2
MIRT541615 C11orf31 selenoprotein H 2 2
MIRT546188 TPD52 tumor protein D52 2 4
MIRT546201 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT547466 MBNL3 muscleblind like splicing regulator 3 2 8
MIRT550570 SLC2A5 solute carrier family 2 member 5 2 2
MIRT550778 DBT dihydrolipoamide branched chain transacylase E2 2 4
MIRT550987 RBM38 RNA binding motif protein 38 2 2
MIRT554735 RHOC ras homolog family member C 2 2
MIRT555390 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556871 IVNS1ABP influenza virus NS1A binding protein 2 2
MIRT557530 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT564850 ZBED3 zinc finger BED-type containing 3 2 2
MIRT569426 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569479 CTSE cathepsin E 2 2
MIRT569653 SLC23A1 solute carrier family 23 member 1 2 2
MIRT570089 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 4
MIRT574074 RNF152 ring finger protein 152 2 2
MIRT575199 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT606929 CDK15 cyclin dependent kinase 15 2 2
MIRT606959 BDH1 3-hydroxybutyrate dehydrogenase 1 2 6
MIRT606968 FAM117B family with sequence similarity 117 member B 2 2
MIRT606975 ONECUT3 one cut homeobox 3 2 2
MIRT607002 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT607129 MARCH4 membrane associated ring-CH-type finger 4 2 2
MIRT607185 SPRY4 sprouty RTK signaling antagonist 4 2 4
MIRT607547 GLI2 GLI family zinc finger 2 2 2
MIRT607617 TMEM130 transmembrane protein 130 2 4
MIRT607638 FAM69C family with sequence similarity 69 member C 2 2
MIRT607690 MAPK10 mitogen-activated protein kinase 10 2 2
MIRT607810 SPATA6 spermatogenesis associated 6 2 2
MIRT607945 SSX2 SSX family member 2 2 4
MIRT608018 CARNS1 carnosine synthase 1 2 2
MIRT608066 SSX2B SSX family member 2B 2 4
MIRT608833 PTCHD1 patched domain containing 1 2 4
MIRT608857 TCTE1 t-complex-associated-testis-expressed 1 2 2
MIRT608863 BCAS1 breast carcinoma amplified sequence 1 2 2
MIRT608871 NR2E1 nuclear receptor subfamily 2 group E member 1 2 2
MIRT608949 CYP7B1 cytochrome P450 family 7 subfamily B member 1 2 2
MIRT608994 PYGO1 pygopus family PHD finger 1 2 2
MIRT609060 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT609066 IGLON5 IgLON family member 5 2 4
MIRT610789 KLK2 kallikrein related peptidase 2 2 2
MIRT620567 WBSCR27 methyltransferase like 27 2 4
MIRT624028 EN2 engrailed homeobox 2 2 2
MIRT626738 TXNL4B thioredoxin like 4B 2 2
MIRT627162 ZNF48 zinc finger protein 48 2 2
MIRT627198 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT631188 TSPAN14 tetraspanin 14 2 2
MIRT631967 YIPF5 Yip1 domain family member 5 2 2
MIRT632888 GINM1 glycoprotein integral membrane 1 2 2
MIRT636752 SLC16A5 solute carrier family 16 member 5 2 2
MIRT637769 PDLIM3 PDZ and LIM domain 3 2 2
MIRT640735 FAM83C family with sequence similarity 83 member C 2 2
MIRT645611 TSPAN6 tetraspanin 6 2 2
MIRT653679 SLC25A36 solute carrier family 25 member 36 2 2
MIRT654119 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT655110 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT662230 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662332 MYLK3 myosin light chain kinase 3 2 2
MIRT662730 LRRC3C leucine rich repeat containing 3C 2 2
MIRT668622 EEA1 early endosome antigen 1 2 2
MIRT687702 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT691171 APOL6 apolipoprotein L6 2 2
MIRT701450 NFIC nuclear factor I C 2 2
MIRT705501 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT706893 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT707402 KCNK12 potassium two pore domain channel subfamily K member 12 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3650 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3650 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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