miRTarBase - #MIRT450026


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pre-miRNA Information
pre-miRNA hsa-mir-1299   
Genomic Coordinates chr9: 40929010 - 40929092
Synonyms MIRN1299, hsa-mir-1299, MIR1299
Description Homo sapiens miR-1299 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1299
Sequence 62| UUCUGGAAUUCUGUGUGAGGGA |83
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1042551075 4 dbSNP
rs747216379 19 dbSNP
rs1009712608 20 dbSNP
rs796108267 21 dbSNP
rs796728500 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol EHD3   
Synonyms PAST3
Description EH domain containing 3
Transcript NM_014600   
Expression
Putative miRNA Targets on EHD3
3'UTR of EHD3
(miRNA target sites are highlighted)		 
>EHD3|NM_014600|3'UTR
   1 TGGGGTGGGGGGACATTCAGACGGGCAGTGTTAGAGGAGGAGATGGGAGCGGTGACTACACACACACACACACACACACA
  81 CACACACACAAACATGCACACACACATATGCATATCTTGACATTGCTCTGTAGGTGAGAGAGGACCATGACGCCCATGTT
 161 TGCAGCTGATACTTGTTTGGGCACACCTCCAAGTTCTCGGGATTAGAAGGACAAGAGCACTCCCAGGCCCCAGAGTCTAA
 241 GCCTAAGTCTCTATCGCTCTTCCCCTCTCCTCGGCCACTCCCCAGATACCAGACCTGAGGCAATTCACTTGCCAGCACAG
 321 ATGGCCAACCCACCTCCAGATTCCCCAGTGCTTCCACACCCGGGCTCTGAGCAAATGGAAAAGACTTTTCATTTAGTAGA
 401 CAATTCACTTCTTTTTCTGTGCTTCCCCTATCTGCTTTGGCTTCCTAATAAGAAATCCATTCAAGAGCTAGGAGATCTGA
 481 GGGCAGGCGGGCAGCTGCAGGGAGGAGAGGTGAGAAAGGAAGCGTCTTCTAGAGACATTGGCCCAGGAGCTCTGTTCTTT
 561 CCTAATCTAAGCCTCTGTCTTCTTCGGCAAACCTTGCTTTGAACTCTGCCAGTATTTCATTTTAAAGAATCCCAGAGCGG
 641 GAGAGAGAAGAGAAAAAAATTGATAAGAGTGAGGAAATTGTCCTGTAGTCTATTGAAAACCAGTCAAGGTGGTTTTAGTT
 721 CATAGATTTTGTTAGATGTTCTTTCCACCTGGCCTATGATGTTTAGATGTTCATACTTGACTCACATTTACCCAGCCCCT
 801 CCTGCGTACCAGGAGCTGTGTTAGGCACTTTATATACATTATTCTATGTGGCCCTCACTGATGCCCCAGGGAAGTATGCA
 881 TTAGCCTTCCCATTTTGCAGTTGAGGAGGCTGAGTAGCCTCAGAAGGGTTTAGGCGACCTTCTGAAACTCACAGAAGTCA
 961 CGTGATGGAGAGAGGATTCAAAGCCAGGGCCTCAGACCCTCACACACTTGTCTGTGCTATGATGTATGCAGGATCCCAGC
1041 ATTGATACCCAATGACAAACTATGGAGAACAAGCAAAGTATGCAGGCCCCCTGCAGCCTCCCAGGACAGGCTGGCAAGGG
1121 AGGAGGGCCGGCCAGCATTTGGTGGCCCATCAGTCTGGCCATCTGTCACGTCACAGAAGCAAACCGTGCCTTCTGGCTCT
1201 GCGCCCCATATTCCCAGCATCATAGACATCCAACAGCACCAGCAGGAGAGTGGGCTAGCCTGCTGGATGCTGTTCGTGCC
1281 TGTCCCTGCTCTGCCTCCCACCCAGTTGCCTGAATCATCCCAGCTCAGATGCAGCCACTGTCTCTTGTCAAGTGGGACCT
1361 CATACTATTCTCAGAAGGCTAACTTGAGAGGTTTGGGGCCTTGTTCCCCAGAGGGTCCCCAGGGACTCTGCAGTGTCCTT
1441 GGCAAATCCCCACTGTACTCAATGCCCTACATTCTCTTCTGTGGTCTCTCCCCTGGCTTGCTTCATGGCCACTGAACCAA
1521 TCACTTTGTATGCTATGCTCCTACTGTGATGGAAAACAAAATGAGTATAACTTATTTTATATCCATATTCAGACTATATA
1601 GAGAATATTCTATGCATCTATGACGTGCTTACTACTGCAGTGCATTTGTCATTAGTCTTCATGTTAATACAGTACATTTA
1681 TTCTTTGGTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agGGAGUGUGUCUUAAGGUCUu 5'
            | |: :| ||||| ||||| 
Target 5' ttCATTTTAAAGAATCCCAGAg 3'
 616 - 637 136.00 -14.50
2 
miRNA  3' agGGAGUGUGUCUUAAG-GUCUu 5'
            |||||:||   |||| |||| 
Target 5' gaCCTCATAC--TATTCTCAGAa 3'
 1356 - 1376 136.00 -20.40
3 
miRNA  3' aggGAGUGUGUCUUAAGGUCUu 5'
             ||| | ||| || ||||| 
Target 5' ccaCTC-CCCAG-ATACCAGAc 3'
 275 - 294 129.00 -14.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30460285 3 COSMIC
COSN30470068 12 COSMIC
COSN26974693 13 COSMIC
COSN30157914 21 COSMIC
COSN20074542 33 COSMIC
COSN31488535 41 COSMIC
COSN28201495 86 COSMIC
COSN28843333 88 COSMIC
COSN23220536 90 COSMIC
COSN27360771 91 COSMIC
COSN31594542 145 COSMIC
COSN23240489 184 COSMIC
COSN31532786 185 COSMIC
COSN1237666 428 COSMIC
COSN22704399 503 COSMIC
COSN9998804 787 COSMIC
COSN8609102 891 COSMIC
COSN31579568 909 COSMIC
COSN30177175 913 COSMIC
COSN9370319 918 COSMIC
COSN31564490 936 COSMIC
COSN31571052 1036 COSMIC
COSN7244795 1262 COSMIC
COSN19508657 1422 COSMIC
COSN22709707 1444 COSMIC
COSN31486661 1489 COSMIC
COSN31515191 1611 COSMIC
COSN16475966 1614 COSMIC
COSN31540172 1616 COSMIC
COSN31585400 1650 COSMIC
COSN31517832 1684 COSMIC
COSN22278770 2262 COSMIC
COSN21741434 2480 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs965709531 2 dbSNP
rs1227046703 3 dbSNP
rs1391706737 5 dbSNP
rs77999318 6 dbSNP
rs374806899 8 dbSNP
rs1373122767 11 dbSNP
rs777410186 13 dbSNP
rs200698516 14 dbSNP
rs372095794 15 dbSNP
rs757832265 19 dbSNP
rs779821173 23 dbSNP
rs746607553 24 dbSNP
rs770239969 25 dbSNP
rs1278410940 34 dbSNP
rs201820295 35 dbSNP
rs367596478 38 dbSNP
rs749601475 41 dbSNP
rs1279251386 45 dbSNP
rs771581623 51 dbSNP
rs1213457764 52 dbSNP
rs774988428 53 dbSNP
rs1023317840 57 dbSNP
rs1175629179 58 dbSNP
rs1187169836 58 dbSNP
rs1429666919 58 dbSNP
rs1479375030 58 dbSNP
rs1485692512 58 dbSNP
rs370001880 58 dbSNP
rs375673528 58 dbSNP
rs541464935 58 dbSNP
rs67643147 58 dbSNP
rs752027133 58 dbSNP
rs766594592 58 dbSNP
rs869043033 58 dbSNP
rs878890799 58 dbSNP
rs878957323 58 dbSNP
rs1343874794 61 dbSNP
rs1223087555 62 dbSNP
rs879167307 62 dbSNP
rs1307822928 67 dbSNP
rs1318786551 68 dbSNP
rs538388340 73 dbSNP
rs756180065 73 dbSNP
rs762993184 73 dbSNP
rs1258889151 74 dbSNP
rs1462057572 78 dbSNP
rs3031889 80 dbSNP
rs1262838449 82 dbSNP
rs1487873395 83 dbSNP
rs1202403131 85 dbSNP
rs1309771339 85 dbSNP
rs1214618088 86 dbSNP
rs1297166431 86 dbSNP
rs1222972588 87 dbSNP
rs1360615854 87 dbSNP
rs1037315084 88 dbSNP
rs1270694770 88 dbSNP
rs1479271087 90 dbSNP
rs60629834 90 dbSNP
rs1190225645 91 dbSNP
rs3209660 92 dbSNP
rs546891895 94 dbSNP
rs567122967 98 dbSNP
rs1157645792 102 dbSNP
rs1428020454 103 dbSNP
rs1360462236 105 dbSNP
rs961890359 106 dbSNP
rs975888686 108 dbSNP
rs1425769220 110 dbSNP
rs895195763 124 dbSNP
rs553843907 127 dbSNP
rs535776415 139 dbSNP
rs1436085603 152 dbSNP
rs144078061 153 dbSNP
rs188280370 154 dbSNP
rs644926 158 dbSNP
rs1042031877 159 dbSNP
rs1222130000 160 dbSNP
rs924861066 161 dbSNP
rs1030918366 168 dbSNP
rs1352905169 173 dbSNP
rs965678087 173 dbSNP
rs868772924 176 dbSNP
rs557816559 187 dbSNP
rs73925220 188 dbSNP
rs1461363653 193 dbSNP
rs1057314080 194 dbSNP
rs1165533995 195 dbSNP
rs1425594976 197 dbSNP
rs150263934 199 dbSNP
rs984961496 200 dbSNP
rs192848173 205 dbSNP
rs962893406 206 dbSNP
rs1418041329 210 dbSNP
rs1045200500 215 dbSNP
rs1479938897 216 dbSNP
rs17011170 229 dbSNP
rs138946477 233 dbSNP
rs1481364148 238 dbSNP
rs562011219 239 dbSNP
rs1290618951 242 dbSNP
rs1242089671 245 dbSNP
rs116661208 249 dbSNP
rs1445788242 250 dbSNP
rs1056437140 252 dbSNP
rs1390808232 253 dbSNP
rs1348536269 256 dbSNP
rs644503 257 dbSNP
rs1364987983 259 dbSNP
rs948131710 268 dbSNP
rs1044226456 273 dbSNP
rs576454724 274 dbSNP
rs761877345 275 dbSNP
rs999351371 276 dbSNP
rs550905779 290 dbSNP
rs1417905015 304 dbSNP
rs1432043797 309 dbSNP
rs1440210704 312 dbSNP
rs1490376678 314 dbSNP
rs1267474840 324 dbSNP
rs1207770089 329 dbSNP
rs1486635667 337 dbSNP
rs1457570819 339 dbSNP
rs116343866 340 dbSNP
rs1238027535 348 dbSNP
rs771662952 356 dbSNP
rs866132267 360 dbSNP
rs772865368 361 dbSNP
rs547125375 362 dbSNP
rs566961454 363 dbSNP
rs529485679 366 dbSNP
rs1453352702 368 dbSNP
rs185349547 372 dbSNP
rs1321663190 377 dbSNP
rs1384188978 379 dbSNP
rs997406867 383 dbSNP
rs1357101937 384 dbSNP
rs1288695986 386 dbSNP
rs766051913 389 dbSNP
rs977427545 397 dbSNP
rs543621218 398 dbSNP
rs1376633283 399 dbSNP
rs938933464 405 dbSNP
rs1429975694 408 dbSNP
rs113736496 409 dbSNP
rs916109254 412 dbSNP
rs1463390363 413 dbSNP
rs1201942059 419 dbSNP
rs189204216 420 dbSNP
rs962862681 422 dbSNP
rs1461351824 428 dbSNP
rs1322708720 430 dbSNP
rs750061440 433 dbSNP
rs1382645314 442 dbSNP
rs972862441 448 dbSNP
rs1044858783 457 dbSNP
rs1295152667 461 dbSNP
rs1433094227 477 dbSNP
rs79433802 489 dbSNP
rs557751600 490 dbSNP
rs1400653219 494 dbSNP
rs1422046364 495 dbSNP
rs1408455166 502 dbSNP
rs887529542 505 dbSNP
rs941747915 506 dbSNP
rs1035997574 511 dbSNP
rs1373097126 519 dbSNP
rs571668759 524 dbSNP
rs534046068 525 dbSNP
rs1244803788 531 dbSNP
rs1470996678 534 dbSNP
rs997473491 547 dbSNP
rs1460843860 550 dbSNP
rs1276456072 555 dbSNP
rs916570421 558 dbSNP
rs1197434940 568 dbSNP
rs1250763774 569 dbSNP
rs948091177 572 dbSNP
rs558822619 574 dbSNP
rs1043811504 576 dbSNP
rs576983359 578 dbSNP
rs1452413072 584 dbSNP
rs758023120 586 dbSNP
rs1331481036 589 dbSNP
rs554284714 598 dbSNP
rs73925221 607 dbSNP
rs1216452628 608 dbSNP
rs764472546 609 dbSNP
rs968803270 612 dbSNP
rs752012797 613 dbSNP
rs1392130116 614 dbSNP
rs977481222 615 dbSNP
rs1386671550 616 dbSNP
rs1163780311 620 dbSNP
rs368476721 632 dbSNP
rs1050797185 633 dbSNP
rs555683172 636 dbSNP
rs575622755 639 dbSNP
rs544196690 640 dbSNP
rs1438312214 646 dbSNP
rs563925912 648 dbSNP
rs1474614897 650 dbSNP
rs1251237318 651 dbSNP
rs1015939191 653 dbSNP
rs916145674 653 dbSNP
rs897539786 654 dbSNP
rs993262343 664 dbSNP
rs1193304915 665 dbSNP
rs577627084 665 dbSNP
rs1292812200 669 dbSNP
rs539941685 681 dbSNP
rs1489269683 689 dbSNP
rs948958043 690 dbSNP
rs1281638633 695 dbSNP
rs1443629316 708 dbSNP
rs1335657888 709 dbSNP
rs560239127 710 dbSNP
rs1407486651 711 dbSNP
rs1366838804 713 dbSNP
rs910022513 720 dbSNP
rs960893419 724 dbSNP
rs992403141 726 dbSNP
rs1024342601 727 dbSNP
rs1470495205 735 dbSNP
rs111257388 737 dbSNP
rs1413884531 739 dbSNP
rs979803212 745 dbSNP
rs925307483 747 dbSNP
rs1490865560 750 dbSNP
rs932979861 753 dbSNP
rs1221204104 755 dbSNP
rs1450066009 763 dbSNP
rs1286836687 765 dbSNP
rs935392330 768 dbSNP
rs549183250 770 dbSNP
rs149234667 778 dbSNP
rs1224926509 782 dbSNP
rs988215960 784 dbSNP
rs923090740 793 dbSNP
rs933187523 797 dbSNP
rs1050355545 806 dbSNP
rs371975595 807 dbSNP
rs781180631 809 dbSNP
rs1347725164 811 dbSNP
rs1319838934 812 dbSNP
rs144464395 828 dbSNP
rs571544372 832 dbSNP
rs1387566515 835 dbSNP
rs1031751395 838 dbSNP
rs993232824 847 dbSNP
rs1190658165 851 dbSNP
rs960106309 853 dbSNP
rs1244088133 864 dbSNP
rs1216705161 865 dbSNP
rs1464739439 877 dbSNP
rs1269972174 886 dbSNP
rs1206196876 888 dbSNP
rs1035460979 890 dbSNP
rs896648891 902 dbSNP
rs1377190683 907 dbSNP
rs993238452 916 dbSNP
rs139198929 917 dbSNP
rs78608057 924 dbSNP
rs1218163896 927 dbSNP
rs1159145367 936 dbSNP
rs567783386 937 dbSNP
rs75342395 946 dbSNP
rs749508881 954 dbSNP
rs1430928865 960 dbSNP
rs530001729 962 dbSNP
rs753280163 963 dbSNP
rs555620299 966 dbSNP
rs956730085 969 dbSNP
rs961520428 971 dbSNP
rs1321150017 973 dbSNP
rs372831513 976 dbSNP
rs1239128514 977 dbSNP
rs971828687 980 dbSNP
rs919011579 990 dbSNP
rs1449085991 1000 dbSNP
rs538147242 1007 dbSNP
rs954823504 1011 dbSNP
rs1462015270 1012 dbSNP
rs1051882194 1014 dbSNP
rs192449006 1020 dbSNP
rs943306015 1034 dbSNP
rs754766404 1046 dbSNP
rs1390946345 1047 dbSNP
rs1042981202 1048 dbSNP
rs142487916 1049 dbSNP
rs998685449 1053 dbSNP
rs1454401759 1059 dbSNP
rs1379560486 1061 dbSNP
rs1302203182 1063 dbSNP
rs540250387 1064 dbSNP
rs1490937603 1068 dbSNP
rs1171207519 1073 dbSNP
rs185096888 1076 dbSNP
rs188245932 1079 dbSNP
rs1445634748 1081 dbSNP
rs1255830997 1087 dbSNP
rs1180697949 1088 dbSNP
rs1023403911 1089 dbSNP
rs116045601 1090 dbSNP
rs1005793753 1091 dbSNP
rs1340791356 1092 dbSNP
rs145995809 1105 dbSNP
rs531135740 1112 dbSNP
rs1272067153 1123 dbSNP
rs1247640794 1127 dbSNP
rs1311737695 1129 dbSNP
rs1056826723 1130 dbSNP
rs772143473 1131 dbSNP
rs1012687550 1133 dbSNP
rs1231200520 1134 dbSNP
rs972884206 1136 dbSNP
rs1368723883 1146 dbSNP
rs1437784103 1146 dbSNP
rs630359 1147 dbSNP
rs905390793 1148 dbSNP
rs1421443720 1153 dbSNP
rs1409388304 1158 dbSNP
rs1426299804 1159 dbSNP
rs1161162168 1160 dbSNP
rs1182023589 1166 dbSNP
rs1001508859 1170 dbSNP
rs1032597400 1171 dbSNP
rs1488594827 1179 dbSNP
rs910238829 1180 dbSNP
rs1330329213 1186 dbSNP
rs1219070946 1187 dbSNP
rs771970516 1189 dbSNP
rs1446764191 1195 dbSNP
rs956696121 1203 dbSNP
rs1009487042 1204 dbSNP
rs1030289848 1207 dbSNP
rs925862366 1216 dbSNP
rs1390254989 1217 dbSNP
rs1265170875 1218 dbSNP
rs934528989 1220 dbSNP
rs954932078 1222 dbSNP
rs1159077602 1223 dbSNP
rs531828935 1227 dbSNP
rs1409201783 1228 dbSNP
rs1052951551 1234 dbSNP
rs895625618 1235 dbSNP
rs986245442 1244 dbSNP
rs910363054 1253 dbSNP
rs963266419 1270 dbSNP
rs1207640791 1274 dbSNP
rs1044479800 1276 dbSNP
rs770396924 1277 dbSNP
rs1208094852 1278 dbSNP
rs919142876 1279 dbSNP
rs929210991 1285 dbSNP
rs1236476014 1296 dbSNP
rs1326970294 1297 dbSNP
rs1265126516 1301 dbSNP
rs551785674 1305 dbSNP
rs1330541302 1310 dbSNP
rs755541409 1313 dbSNP
rs570919438 1314 dbSNP
rs1299478265 1318 dbSNP
rs1384067887 1321 dbSNP
rs1366456393 1322 dbSNP
rs1320289184 1335 dbSNP
rs1456159180 1337 dbSNP
rs1408900523 1341 dbSNP
rs916935125 1342 dbSNP
rs1173630055 1347 dbSNP
rs1243669854 1353 dbSNP
rs535879078 1354 dbSNP
rs948464720 1360 dbSNP
rs1425412362 1362 dbSNP
rs1376510905 1363 dbSNP
rs1196389575 1366 dbSNP
rs776316420 1370 dbSNP
rs905899950 1379 dbSNP
rs1016859004 1382 dbSNP
rs1244912489 1388 dbSNP
rs1367621758 1389 dbSNP
rs565602327 1392 dbSNP
rs905358665 1399 dbSNP
rs755866072 1404 dbSNP
rs1297375712 1411 dbSNP
rs1030267924 1413 dbSNP
rs777385891 1421 dbSNP
rs1053887574 1430 dbSNP
rs1335457483 1434 dbSNP
rs1397575398 1436 dbSNP
rs1464647231 1441 dbSNP
rs892678844 1454 dbSNP
rs569387841 1456 dbSNP
rs1395953471 1459 dbSNP
rs777565180 1463 dbSNP
rs987659155 1470 dbSNP
rs1017350410 1471 dbSNP
rs1431299007 1474 dbSNP
rs1390441777 1475 dbSNP
rs867342802 1477 dbSNP
rs964418382 1479 dbSNP
rs1447445505 1480 dbSNP
rs374099795 1482 dbSNP
rs1327357536 1491 dbSNP
rs954761951 1497 dbSNP
rs759132037 1503 dbSNP
rs1441753279 1505 dbSNP
rs13377 1506 dbSNP
rs1483399958 1520 dbSNP
rs1017727118 1536 dbSNP
rs1204388959 1549 dbSNP
rs1226373398 1563 dbSNP
rs963534666 1568 dbSNP
rs536764683 1569 dbSNP
rs973195437 1571 dbSNP
rs1331410453 1572 dbSNP
rs1411144863 1574 dbSNP
rs1370578656 1575 dbSNP
rs567732274 1579 dbSNP
rs1484205572 1580 dbSNP
rs762230283 1581 dbSNP
rs1415772057 1586 dbSNP
rs950584937 1589 dbSNP
rs536745064 1590 dbSNP
rs76044618 1597 dbSNP
rs1366679537 1599 dbSNP
rs139901819 1604 dbSNP
rs1044584587 1612 dbSNP
rs565810901 1613 dbSNP
rs948454676 1615 dbSNP
rs980252468 1616 dbSNP
rs1195486480 1617 dbSNP
rs1291084351 1619 dbSNP
rs15056 1621 dbSNP
rs7597843 1625 dbSNP
rs3731589 1626 dbSNP
rs186152589 1628 dbSNP
rs533527413 1629 dbSNP
rs1465018376 1632 dbSNP
rs553733464 1635 dbSNP
rs1407668910 1649 dbSNP
rs573360580 1659 dbSNP
rs1029905552 1667 dbSNP
rs1404575224 1675 dbSNP
rs142176692 1675 dbSNP
rs1388238290 1689 dbSNP
rs1386202491 1692 dbSNP
rs1457691495 1699 dbSNP
rs1007061576 1703 dbSNP
rs1018825024 1704 dbSNP
rs189922370 1718 dbSNP
rs1340132228 1720 dbSNP
rs554635405 1725 dbSNP
rs755267618 1727 dbSNP
rs1450237681 1728 dbSNP
rs978481802 1729 dbSNP
rs1285305084 1731 dbSNP
rs1329057172 1735 dbSNP
rs558584550 1745 dbSNP
rs1032701232 1746 dbSNP
rs1226074917 1747 dbSNP
rs551943939 1750 dbSNP
rs1255339370 1751 dbSNP
rs113027259 1753 dbSNP
rs1218539887 1761 dbSNP
rs3731588 1768 dbSNP
rs994936331 1776 dbSNP
rs747954613 1778 dbSNP
rs1457740072 1786 dbSNP
rs1387852994 1787 dbSNP
rs949975898 1788 dbSNP
rs758328653 1790 dbSNP
rs1416250673 1795 dbSNP
rs979975149 1801 dbSNP
rs57885891 1803 dbSNP
rs992743672 1808 dbSNP
rs1250350391 1814 dbSNP
rs1252143290 1816 dbSNP
rs1024261986 1829 dbSNP
rs1246753283 1832 dbSNP
rs1176058027 1834 dbSNP
rs369654104 1841 dbSNP
rs1278698195 1845 dbSNP
rs1218328012 1849 dbSNP
rs1345253859 1854 dbSNP
rs932598007 1858 dbSNP
rs1364882482 1878 dbSNP
rs1364116698 1879 dbSNP
rs373150239 1879 dbSNP
rs1318461793 1886 dbSNP
rs1296758483 1888 dbSNP
rs925626020 1889 dbSNP
rs1360238151 1891 dbSNP
rs1405820739 1892 dbSNP
rs1305175486 1896 dbSNP
rs1333570872 1896 dbSNP
rs650742 1899 dbSNP
rs1392291804 1900 dbSNP
rs1169414326 1903 dbSNP
rs891385302 1917 dbSNP
rs988547219 1919 dbSNP
rs1218727516 1925 dbSNP
rs1483851445 1928 dbSNP
rs1039889838 1929 dbSNP
rs1208852216 1930 dbSNP
rs1484374883 1953 dbSNP
rs1228594207 1958 dbSNP
rs1276347960 1958 dbSNP
rs914053632 1963 dbSNP
rs1307723471 1964 dbSNP
rs1293166385 1966 dbSNP
rs1317471693 1975 dbSNP
rs770080158 1980 dbSNP
rs945587371 1987 dbSNP
rs1052438301 1988 dbSNP
rs890678219 1989 dbSNP
rs149768883 1991 dbSNP
rs770425945 1993 dbSNP
rs899194197 2002 dbSNP
rs994905198 2003 dbSNP
rs530157299 2004 dbSNP
rs886267724 2010 dbSNP
rs1167308797 2014 dbSNP
rs1024365348 2015 dbSNP
rs1487262172 2024 dbSNP
rs763198081 2026 dbSNP
rs971359566 2030 dbSNP
rs79890496 2033 dbSNP
rs969976502 2034 dbSNP
rs1482513735 2036 dbSNP
rs1249448361 2037 dbSNP
rs974165841 2042 dbSNP
rs918672548 2046 dbSNP
rs1442116326 2047 dbSNP
rs1352478803 2052 dbSNP
rs1157346350 2058 dbSNP
rs1371490263 2060 dbSNP
rs678404 2060 dbSNP
rs1295456237 2063 dbSNP
rs145733213 2086 dbSNP
rs1349591033 2091 dbSNP
rs1163366699 2094 dbSNP
rs566954673 2110 dbSNP
rs1032625164 2111 dbSNP
rs912527779 2116 dbSNP
rs551576307 2117 dbSNP
rs678829 2121 dbSNP
rs913016148 2125 dbSNP
rs1248010162 2127 dbSNP
rs1167269169 2128 dbSNP
rs1488688776 2128 dbSNP
rs1264634777 2134 dbSNP
rs181423302 2139 dbSNP
rs1348376265 2140 dbSNP
rs1331093844 2144 dbSNP
rs185793545 2146 dbSNP
rs1227883113 2151 dbSNP
rs566923114 2152 dbSNP
rs1333995784 2158 dbSNP
rs775178739 2164 dbSNP
rs1387558321 2166 dbSNP
rs1367410019 2180 dbSNP
rs891567542 2186 dbSNP
rs1437956240 2187 dbSNP
rs1379169455 2190 dbSNP
rs1010380085 2191 dbSNP
rs1159016621 2194 dbSNP
rs1452448021 2195 dbSNP
rs535875022 2207 dbSNP
rs1023998132 2210 dbSNP
rs943621381 2212 dbSNP
rs1448971678 2213 dbSNP
rs115835303 2214 dbSNP
rs1191547487 2219 dbSNP
rs141625357 2223 dbSNP
rs1034227806 2229 dbSNP
rs930667351 2234 dbSNP
rs1291686301 2235 dbSNP
rs1207955703 2238 dbSNP
rs545241599 2239 dbSNP
rs79138395 2240 dbSNP
rs1234299672 2256 dbSNP
rs773724261 2260 dbSNP
rs1301479247 2268 dbSNP
rs1458695731 2274 dbSNP
rs886485498 2276 dbSNP
rs541698449 2279 dbSNP
rs1320482655 2285 dbSNP
rs951514247 2286 dbSNP
rs1238111837 2296 dbSNP
rs1014771442 2304 dbSNP
rs1045538654 2306 dbSNP
rs1304058599 2319 dbSNP
rs147071220 2324 dbSNP
rs761112456 2330 dbSNP
rs530095346 2336 dbSNP
rs1032929284 2337 dbSNP
rs957027309 2339 dbSNP
rs766428478 2341 dbSNP
rs925535096 2345 dbSNP
rs1187912819 2350 dbSNP
rs1405032354 2355 dbSNP
rs936880083 2357 dbSNP
rs1201143542 2360 dbSNP
rs1482942056 2366 dbSNP
rs1278476574 2382 dbSNP
rs753870940 2385 dbSNP
rs1343403600 2398 dbSNP
rs1464127241 2421 dbSNP
rs1342814046 2428 dbSNP
rs1314001358 2433 dbSNP
rs955123056 2436 dbSNP
rs1396118592 2438 dbSNP
rs543869769 2439 dbSNP
rs912045679 2440 dbSNP
rs1045883782 2443 dbSNP
rs1370988179 2454 dbSNP
rs965286678 2455 dbSNP
rs1167071370 2457 dbSNP
rs975016461 2468 dbSNP
rs1001610275 2469 dbSNP
rs906907809 2469 dbSNP
rs1285762213 2477 dbSNP
rs1033941512 2493 dbSNP
rs1255486927 2507 dbSNP
rs1207635591 2514 dbSNP
rs920815902 2517 dbSNP
rs1274423185 2523 dbSNP
rs1194459979 2527 dbSNP
rs563547502 2531 dbSNP
rs1358837737 2532 dbSNP
rs376510211 2534 dbSNP
rs1266552026 2535 dbSNP
rs1244693185 2542 dbSNP
rs1354332524 2543 dbSNP
rs147697531 2545 dbSNP
rs551247553 2547 dbSNP
rs995360053 2560 dbSNP
rs1327712644 2561 dbSNP
rs1295846435 2566 dbSNP
rs571411307 2567 dbSNP
rs1319484173 2570 dbSNP
rs1163840595 2576 dbSNP
rs1047735052 2581 dbSNP
rs1196225663 2590 dbSNP
rs1256819463 2595 dbSNP
rs1460847724 2596 dbSNP
rs1025453110 2600 dbSNP
rs190690715 2606 dbSNP
rs907886983 2609 dbSNP
rs1184401424 2611 dbSNP
rs553182856 2618 dbSNP
rs1472930437 2621 dbSNP
rs950148579 2633 dbSNP
rs527540507 2638 dbSNP
rs1236137151 2640 dbSNP
rs1472667466 2646 dbSNP
rs1046255362 2650 dbSNP
rs986936934 2654 dbSNP
rs867347037 2664 dbSNP
rs183211700 2666 dbSNP
rs1426054798 2667 dbSNP
rs1229725792 2668 dbSNP
rs1329174082 2670 dbSNP
rs1278599932 2682 dbSNP
rs1439570195 2683 dbSNP
rs2180542 2691 dbSNP
rs1440133593 2699 dbSNP
rs964128737 2700 dbSNP
rs1161210893 2704 dbSNP
rs545984523 2707 dbSNP
rs975426425 2713 dbSNP
rs376965281 2717 dbSNP
rs936933108 2732 dbSNP
rs1479114558 2733 dbSNP
rs1415009298 2734 dbSNP
rs1247692858 2740 dbSNP
rs988379274 2747 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agggagugugucuuaAGGUCuu 5'
                         |||||  
Target 5' -----ucaagcugucUCCAG-- 3'
 		1 - 15
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000322054.5 | 3UTR | UCAAGCUGUCUCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.331 5.7e-2 0.482 8.5e-3 24 Click to see details
GSE32688 Pancreatic cancer -0.16 1.9e-1 -0.252 8.2e-2 32 Click to see details
GSE38226 Liver fibrosis -0.191 2.0e-1 -0.041 4.3e-1 21 Click to see details
GSE26953 Aortic valvular endothelial cells -0.16 2.3e-1 -0.078 3.6e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.082 3.5e-1 0.114 2.9e-1 25 Click to see details
GSE42095 Differentiated embryonic stem cells 0.047 4.2e-1 0.053 4.1e-1 23 Click to see details
GSE28260 Renal cortex and medulla 0.052 4.3e-1 0.033 4.6e-1 13 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-1299 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT079552 VAMP3 vesicle associated membrane protein 3 2 2
MIRT154885 GNAS GNAS complex locus 2 4
MIRT275056 SESN2 sestrin 2 2 4
MIRT303051 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 2 4
MIRT319158 CCDC71L coiled-coil domain containing 71 like 2 2
MIRT339620 TMPO thymopoietin 2 2
MIRT441961 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT445113 DCAF4 DDB1 and CUL4 associated factor 4 2 2
MIRT445290 CD274 CD274 molecule 2 2
MIRT446037 HMCN1 hemicentin 1 2 2
MIRT446162 C8A complement C8 alpha chain 2 2
MIRT446175 ZNF37A zinc finger protein 37A 2 4
MIRT446414 OCA2 OCA2 melanosomal transmembrane protein 2 2
MIRT446884 TRIM25 tripartite motif containing 25 2 2
MIRT449789 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT450026 EHD3 EH domain containing 3 2 2
MIRT450367 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT479739 CCND1 cyclin D1 2 2
MIRT484809 ZNFX1 zinc finger NFX1-type containing 1 2 2
MIRT485892 ZFP36 ZFP36 ring finger protein 2 2
MIRT486036 UBBP4 ubiquitin B pseudogene 4 2 2
MIRT488295 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT497377 METTL8 methyltransferase like 8 2 2
MIRT508219 ZNF850 zinc finger protein 850 2 6
MIRT510923 PRRX1 paired related homeobox 1 2 4
MIRT512661 STEAP3 STEAP3 metalloreductase 2 2
MIRT520031 YOD1 YOD1 deubiquitinase 2 6
MIRT528490 AGTR2 angiotensin II receptor type 2 2 2
MIRT530083 PAGR1 PAXIP1 associated glutamate rich protein 1 2 4
MIRT531086 CCDC140 coiled-coil domain containing 140 2 2
MIRT535363 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT535595 NUDT21 nudix hydrolase 21 2 2
MIRT538613 CCT5 chaperonin containing TCP1 subunit 5 2 4
MIRT539002 AVL9 AVL9 cell migration associated 2 2
MIRT545918 ZC3H4 zinc finger CCCH-type containing 4 2 2
MIRT548482 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT555088 PURB purine rich element binding protein B 2 2
MIRT561421 TRIB3 tribbles pseudokinase 3 2 2
MIRT564965 WTAP WT1 associated protein 2 2
MIRT571686 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT574656 KLHL15 kelch like family member 15 2 2
MIRT610037 CNOT6 CCR4-NOT transcription complex subunit 6 2 6
MIRT612436 SMOC2 SPARC related modular calcium binding 2 2 2
MIRT614349 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT615304 CCDC158 coiled-coil domain containing 158 2 2
MIRT615771 FSD2 fibronectin type III and SPRY domain containing 2 2 2
MIRT615889 MT1A metallothionein 1A 2 2
MIRT619147 ZNF326 zinc finger protein 326 2 2
MIRT622042 SSBP2 single stranded DNA binding protein 2 2 2
MIRT637385 R3HDM2 R3H domain containing 2 2 2
MIRT640739 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT644418 PIGS phosphatidylinositol glycan anchor biosynthesis class S 2 2
MIRT647638 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT654305 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT654367 RBM23 RNA binding motif protein 23 2 2
MIRT655944 NDST1 N-deacetylase and N-sulfotransferase 1 2 2
MIRT655990 MYRF myelin regulatory factor 2 2
MIRT659692 CD226 CD226 molecule 2 2
MIRT665868 TIAF1 TGFB1-induced anti-apoptotic factor 1 2 2
MIRT667317 MYO18A myosin XVIIIA 2 2
MIRT684312 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT694138 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT698529 TFRC transferrin receptor 2 2
MIRT698834 SSR2 signal sequence receptor subunit 2 2 2
MIRT700657 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT705377 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT707314 TMEM184B transmembrane protein 184B 2 2
MIRT709027 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT716032 TMPRSS4 transmembrane protease, serine 4 2 2
MIRT718228 LCE1A late cornified envelope 1A 2 2
MIRT718475 TMEM151A transmembrane protein 151A 2 2
MIRT722333 BEND6 BEN domain containing 6 2 2
MIRT734096 TUG1 taurine up-regulated 1 (non-protein coding) 3 0
MIRT734099 NOTCH3 notch 3 3 0
MIRT755871 LIF LIF, interleukin 6 family cytokine 4 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-1299 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1299 Doxorubicin 31703 NSC123127 approved resistant High Hepatocellular Carcinoma tissue and cell line (HepG2)
hsa-miR-1299 Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-1299 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-1299 Bromocriptine 31101 NSC169774 approved resistant Low Prolactinoma tissue
hsa-miR-1299 Bromocriptine 31101 NSC169774 approved resistant High Prolactinoma tissue
hsa-miR-1299 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-1299 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM43)
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1299 Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-1299 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-1299 4-Hydroxytamoxifen+Tamoxifen resistant cell line (LY2)
hsa-miR-1299 Ethanol+Tamoxifen resistant cell line (LY2)
hsa-miR-1299 Pegylated interferon alpha+Ribavirin resistant tissue (chronic hepatitis C)
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1299 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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