miRTarBase - #MIRT450240


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pre-miRNA Information
pre-miRNA hsa-mir-4677   
Genomic Coordinates chr1: 243346176 - 243346255
Description Homo sapiens miR-4677 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4677-5p
Sequence 13| UUGUUCUUUGGUCUUUCAGCCA |34
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN10045564 8 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1050583047 19 dbSNP
rs1425855779 21 dbSNP
Putative Targets

Gene Information
Gene Symbol TRIM66   
Synonyms C11orf29, TIF1D, TIF1DELTA
Description tripartite motif containing 66
Transcript NM_014818   
Expression
Putative miRNA Targets on TRIM66
3'UTR of TRIM66
(miRNA target sites are highlighted)		 
>TRIM66|NM_014818|3'UTR
   1 GAGCCAAAAGGAGACTGGGCACTCTGGCAGCTGTTGTCCCATACTGTCGACCATTCCTCCCCATCTTGCAGCTTATCCTC
  81 TTCAGAGTGTGGATGGTAGATGAGTCTTGTTGAACTGTGTAGTGCTCTTCTTTGCCATTTGCATCTACAGCATTTATTTG
 161 GGAGCCGTAGTACATCCACTACAGAGAAGATTTCAGTAATAAACAGGAAAGAGGAAGGTATTTATTATTACCAGAGTAAT
 241 CAGATGTATAGGCTCCACTTGACAAGACCACACCTGGTTAGGCTCGGGAAAACCTACTTTCCTTGGTGAATTTTTTTCTG
 321 CCTGGGAAAGCAGACCCGTCTAACCTTTTAGTGTCCAGGGCTCAGGAGCCATGTATACATCTGAACTCCTCCTGGGCTCA
 401 GAAGTGGGTAAAAGAAGGGAGAGAGGTTTAGACATATGGCAGGACTGTGATCCCTGGCCCAGCACAGCCAAAGACTGTCA
 481 CTGTTTGCCTTTGCTTGTCCTGTCTGGATAGAGGCACCTGCCATGTGCAGACTAGTGGAGGCTTCTAGAGGCCATAGGTC
 561 TCAATTTGTGCCTATTTGGGTTCTAACGGTTTTCAGGGTATTTGTTTTGCATAGTCACTTTCCTGATGTTGACATAGGTG
 641 GCTGCTGTGAAAATGCTGTGGATGGTGTGACATTCTTGACTGAGCTGGGTGGCTGTGGAGAGACCACTTAAATCTTCTGG
 721 TTCAGATTTCACTTACAGACTTAGTAAGATGTCCACTTCAGAGCCCGCCCTCTGTGCTACTTACTCTGGGCTAATCACAC
 801 TTCTTTAGGGTGAGAACCTGCCTTCCTAGAAGTGACTGTTGGTGCTTGTCAGTGGCCATACCCTTCATCATCCTCATTCA
 881 GAGGTATGGATCGTGAGTTCTGCTTGTGAATACTGTGAGACAGCTGCTGTCTGCTTCAGGTCCAGAGTTCCATGGGTGGA
 961 GAGAGTAACCCACAACCAGCTCACTCCTCTGGGCCTCTCCTCCTGCTTAAAGATTCTAGTTCTCAACCTCTCCAAGTTCA
1041 TGAGCCAAAGATCAGAAGTGAGTCTTCTGACCAGCCCGCCTCCAGGCTGTCTACAGCCCCAAAAAAGCCAACACTTTTCT
1121 GGCAGCCCTTTTTGTTGGAGGTTAGAGAAGGCCTCAGGGACCAACAGGGGCCAGATCTAGACATTCCTGGGGGAAGTTTG
1201 TCTAAGGTGGACAGGGGGAAAAATCAAGAGGCAAAAAGCCAGTGTCCTTTGGTGACCATGAAGCAACCTCAGAGCCTTAG
1281 TTCTCCTAGAATGCAGAGAGAAGCATTCTGGAAGCCATGGGAACAGGAGCTCGAGGCTGCATCCTGAATGCATCTGCATG
1361 GCCCTCGCAGGGTGTTTGTGAGGATACTGGAGGTCAGGCTACCTCCCAAGCAAGGGCTTGGTTGAGAAGGAACCCATTGC
1441 TCATATTGTTGGGGGAGCTATGAACCTGACATGTCAGTGGCCAGGACTGAGACAGCTCTCCCTGGTCCTGTCATTGCATG
1521 GCTAATTTCAGGGGAGTCTGAGGTCATGGCTTTATTTTTGCTAACAGATGAAGTTCAAGGATGTTCTTGTTTGTAGGGCC
1601 TTTGCTAATGAGCAGTTTTTTAATTAGAAAACATTTCTTCTCTCTTTGTGAGTTGATGGTATTGCTCATTTCCTTCTCTA
1681 CCCAACCTGAGAGATCATCTTCACTTTAAAGCAAACCATGCCCCTTGGCTTGCCATTCTTTCAGCAGCACATGCCACGTT
1761 CTAAGCAGATGGGCTTCCGTGATCCCGTTTTCTAGTTTGGGGTAACTGAGTCTTGAATGCTTTACTAGTCCGGCAATCTT
1841 TGGACTTAGGCTTCTGCCCTTTGAGACTCACATGACTTTCTGGTTTGGGGTCTGGTCATTTCCCTTTCAATTTTTGAATC
1921 TCCTTCTCTGTTCAGTTGGCTTGGCAAAGTACCCTCTGTTCTCATGTCACTAATTCCTGCTCTAGGTCATCTTTCCTTTG
2001 TGCAGCCCACATTCCCACCATCCTGTGAACTTTGTTGTACTTGGTGTTGGGCAACTGGTGAGTGTTGTGACAGGCTCAGA
2081 CCTGATCCTTCCTCAGGAGCAATTGGAGACCACAAATTTAAAGCAGAAATACCTGTTAAAAGCTTGGCTTTCCTTATATG
2161 AGTGAGGCTCCCAGCTTGGGTGTGGCCTCCTGGGCTCACGGATCAGCTTGCTGGGCCAGAGGGGGTCTTAGTAATGTGCT
2241 AGAGAGACACATGCTCCCTTCTCATCGTAGAGAGCCTGCATGCTGAGAGGCTCCCTTTACACACCTGCCTCTCGCTGGCT
2321 TTTCCTTTAGACCTAGCCACCAGTGTTTTGAATCATGGTTTTGTTTTGTTTTTGCATGCAAAAACCAGAACATGACTTAG
2401 AAATTAAAAAAAAAAAAATCCTACTAGCCAAGTGACTGCCTGCAGAGGCTCTTCATTAACATTTGGGCTGATCCTGCTTT
2481 TGACTTATTCCCATAATGGCCCAGTTTTGAAGTCAGCCAAGTCCTTTTGTCCTTGACAACATCATGCAGTGGAAATACGG
2561 TGAGTTCTAGATTCTTATGGGACAGCATGCAGCCCTAGAGGAAAAATTGACTTCTTGGGTATGCTGAGAAATAAGACAGT
2641 AAAATGGCTTCAGTTGATGCAAGGGGATTTTAGTTAAAAATTGGTTCAGGATTTTTAAATTTTATTTTATTTTTTGGCTG
2721 GGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTAAGGACAGCAGTTCGAGAC
2801 CAGCCTGGCCAACATAGTGAAACCCTGTCTCTACTAAAAATACAAATATCAGCCAGGTGTGATGGCACATGCCTGTAATC
2881 CCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAATCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATCATGCCATT
2961 GCATTCCAGCCTGGGCAACAGAACGAGACTCCGTCTCAAAAAAAAAAAAATTGGTTCAGGATGAACTTGCAGAGCACTCT
3041 TCCACAGAACATGGTTAGGTTAGCCCTGCCTGACTTCTAGCAATTGCTAACTATACACCTTGCCTGCCTCTAGGACCCCT
3121 ACCTGAGTGGCAACCATACCTTCCATATGCTCTGTTCCATGGCAGTCCCTGCCATCCCCCACCAGCGGACTCTGGCTCCC
3201 TCCCTGTACCCATTTCTAGCAACAGCTCCTTGCCTGGCTGCTAAGACGGAGGCGCCTCCTTGTTTGTTCCTGGGCTCTGT
3281 TCTGCTCCCTCTCTCACTCCATGGAGTCACTTATAGTCTTCCTTTCTGAACGCCAGAATTGAGCCTTTGCTCCTTCTGGA
3361 TCACCCCTTCCTGGGCTTCTTCTCCATCCCTCAGTACTGCTAAAATTGCCCTGCTCCTTTAGTCCATTTCCATGACCTCA
3441 GCCCTCTCTCTCCTCTCCTTGTCTTTTAACTTTCTCCTGGACTTCTTCCTCTCCCCAGCATGAACCCAGAGCCTATCACA
3521 CACTGATGTTTTTGTCAGCATCCTGAACTTTCTCATGCCCTTCAACTTTATTTATTTATTTATTTATTTATTTTTTATTT
3601 TTTGAGAGAGAGAGTCTCACTCTGTCATGCAGGCTGGAGTGCAGTGGTATGATGTCGGCTCATTGCAACCTCTGCCTTCT
3681 GGGCTCAGGTGATCCTCCCATCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCATGCCACCATGCCTGGCTAATTTTTC
3761 TACTTTAGGTAGAGATGGAGTTTCGCCATGTTGCTCAAGCTGGTATCAACACTCCTGGGCTCAAGCAGTCTGCTTCCCTT
3841 GGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCAGGCGTATCCCCTTCAATTTTGCTGAAACTATCAGCC
3921 ATTCTCCATTTTCGGCATCATCATATTTGCTGCTTCCACCTCCTGGGCTGCTATGCATGACAGATTCACAGTTGGCAGCC
4001 TCAGTTGAGCTCTCAGTGTTGACTGGAAATTCTTTAACTTGTTGTGATCCCTTTTTTTTTCCCCACCCATGCCTCCATCT
4081 TTGTCCTCCACAAATGACTGAGCTCACTGTCTACTTCACAGAAGACAGCCCCTAAAGCAAGAGCTTCCTTGCCTGCTGTT
4161 CCTCTCTCCCCTCTCATTCATCTGTGTCTGTAACTCTCCCCAACCCCTCCATTCTTGCTCCTATTTAATTCTCTATATCT
4241 TGAATCCTGTTGTATGTCCTCCAAGACTGCTCCCTCGCTTACTCCACTGCTCCCACTCCCTGGAGTCTCCAGCCTCTGTC
4321 TCCACTGGTTACCTCCACACAGCCTGCAAACAAGTTCTCCACAAGATTAAAACAGCATTTCTCAGAGTCTGTTACCCCTT
4401 ACACATTTTCCTTGTTAACCAAGTTACTTTTAAAAAGATCCTTTTTAAACTGATTCTTCCTCAGCTGTTCTTCAGCCCTC
4481 TATACTTTTTCATAAAAGTCACCAGTGACTGCCCAGTTGCCAAATAGAATGAATACCTTTCAGTGCTCAGCTGTCTTGAC
4561 CTCTCCGCAGCATTTCACACCACCCACCAACCCTCAGTGAAACAACCTCCTCCCTTAGCTTTTATGACACCACAAGTCTC
4641 TGGATTCTCAGAGAATCCAGAAAAACAAGTCTCTGGATTCTCTCCTCTTACCTCTCAGCCCACACAGGCTGAGCTGTCCT
4721 TGAAACCTAGATGGGGGAAATGTCTGTGGCTGTCTGTGGTCTCTTCTTTTCAGGAGTTGGGTAGGGAGGAAGAATCACAG
4801 CTGCTCCTGCTTCCTCTGTCTGTCTCTCTATTTCCTGAGTCCCTTCCTTTTCCTGAACTCAGTTCTCCTCATGCCAACCA
4881 TGTTTATGAGCTCCTGCTGGGAGGACAGCATCTGTGAGTCCTTCCCTCTGTCTCTCCCAGACAACACAGAGGTTTTAGCC
4961 TGTTTGCTAAGAGACCCCATCTAAGTCAGCCCAAGGGTGTGGATTAGGTTTTACAGCATCCAGGCCGCAGTCTGGCTAAA
5041 CTGGATTACCAGGCTGGTGGGCAGCTCCTCACCATGATCCTGCACCAGTTAGAGCCTGCTGTAGTTGGGAAGGAGCCTGG
5121 GATTGTGGTAAGATGTGTTTCCGTGCATGTCAGTGCTGCTAACCAGGAGGAGAACCTGGCAGGGTGGGTGCCTGCTGCTG
5201 ATAACATTCGGATGGAGGGAGACTAGGGAGCGCGGTGGCTGCTCCCTTGCTGGGGCTCAGCTGGAGTCAGCATGACTCCT
5281 TATATCAGGGCCTTTCCCACCTGTGCTGATCACCACCACCTGCTTGCTCCAGTTGTTTCTGGAGTTGGAGGCAGCTATTG
5361 GTTGCTTTCTTGGAGGTAAGGAGGTATATACTAGAAAGATATCTGATTTGAGAGTCTGAACACCAAAATTTTTGGCTCTT
5441 TCCATTATGAGCTGTGTAACCTTGGATACAGTTTCCTCATCTATAAAGTTGTGGTGGGAGAATGGCTGAGAACAGTGATC
5521 TCTCAGCTCTCCAGCTGTAAAGATGTTAATTATGATTTTAACTCTCAAGATCAGGCCACATAAGGAACAGGGGAATTCCA
5601 GGGGTGGGACACAGCTGGGGGAGTCCAGACCAGGGCAGGGAAAGGAGACTCACAAGCCAAACAGAGCTGCTTTGGGGAAA
5681 GTTCTTATCAGCTGGTGCTGCTTCCTGAGCCATATGCCCATTCCTCAAGCTGTACCCCTTTCTTGGCTATGTAGGATGAG
5761 TTCCTCCTAGGCCCTTGTTAGGAGTGGCTATTGGATTCTAAGCGGTTGGGGCATGAGGGAGGATATTTTAAAGGGAAGTA
5841 TAGCTGATTTTAAAAGAACCTATACATTCAAGAACAAATAAAAAACAGCACTTTTCTTTACCAAGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' accGACUUUCUGGUUUCUUGUu 5'
             || | | |:: ||||||| 
Target 5' aacCT-ATACATTCAAGAACAa 3'
 5857 - 5877 150.00 -7.80
2 
miRNA  3' acCGACUUUCUGGUUUCUUGUu 5'
            | ||:|  ||| |||:||| 
Target 5' tgGGTGGATCACCTAAGGACAg 3'
 2768 - 2789 148.00 -19.70
3 
miRNA  3' acCGACUUUCU---GGUUUCUUGUu 5'
            | ||::|||    | :|||||| 
Target 5' gtGGTGGGAGAATGGCTGAGAACAg 3'
 5491 - 5515 140.00 -16.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN5264131 28 COSMIC
COSN28885592 34 COSMIC
COSN30126217 49 COSMIC
COSN20869201 64 COSMIC
COSN30538766 77 COSMIC
COSN19734513 112 COSMIC
COSN30622521 151 COSMIC
COSN28737345 160 COSMIC
COSN19672263 166 COSMIC
COSN20329420 285 COSMIC
COSN32055836 291 COSMIC
COSN8876405 439 COSMIC
COSN8285192 550 COSMIC
COSN21078550 714 COSMIC
COSN32057356 721 COSMIC
COSN16329715 892 COSMIC
COSN25589131 1268 COSMIC
COSN5311134 1348 COSMIC
COSN1547541 2314 COSMIC
COSN27205141 2405 COSMIC
COSN27265360 2406 COSMIC
COSN4897904 2735 COSMIC
COSN19080339 2747 COSMIC
COSN25854510 2991 COSMIC
COSN27512113 2997 COSMIC
COSN32064481 3333 COSMIC
COSN27707945 4524 COSMIC
COSN5311127 4563 COSMIC
COSN8876398 5170 COSMIC
COSN21319541 5388 COSMIC
rs4929923 291 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1040562168 4 dbSNP
rs1333032487 6 dbSNP
rs1410030632 7 dbSNP
rs1395075041 8 dbSNP
rs1243290437 11 dbSNP
rs1425024085 12 dbSNP
rs925236090 17 dbSNP
rs1165658833 19 dbSNP
rs1292900765 22 dbSNP
rs753440295 23 dbSNP
rs1386430777 24 dbSNP
rs777219345 25 dbSNP
rs574648291 28 dbSNP
rs555144426 29 dbSNP
rs548705102 35 dbSNP
rs1437477145 38 dbSNP
rs1049171480 39 dbSNP
rs1211737496 41 dbSNP
rs930741883 43 dbSNP
rs1358353725 44 dbSNP
rs774490226 48 dbSNP
rs966537520 49 dbSNP
rs1403064511 51 dbSNP
rs769040693 57 dbSNP
rs992234942 63 dbSNP
rs1326384291 75 dbSNP
rs960738629 84 dbSNP
rs1280493176 85 dbSNP
rs1358807158 88 dbSNP
rs1263731744 92 dbSNP
rs1232797032 93 dbSNP
rs1329968497 105 dbSNP
rs927289077 114 dbSNP
rs1034060383 123 dbSNP
rs149149890 125 dbSNP
rs898715917 127 dbSNP
rs572119198 134 dbSNP
rs1408555646 135 dbSNP
rs971283887 137 dbSNP
rs917196086 141 dbSNP
rs1378460477 146 dbSNP
rs988589661 148 dbSNP
rs145239621 152 dbSNP
rs62622852 160 dbSNP
rs4929924 166 dbSNP
rs1039080735 167 dbSNP
rs999919018 177 dbSNP
rs1344071403 178 dbSNP
rs1163798237 179 dbSNP
rs1457263320 185 dbSNP
rs1313610043 188 dbSNP
rs1236352072 194 dbSNP
rs1413548744 200 dbSNP
rs1259707051 210 dbSNP
rs1156777081 218 dbSNP
rs943067071 222 dbSNP
rs1472260510 224 dbSNP
rs113534582 231 dbSNP
rs1490154947 232 dbSNP
rs1043651932 238 dbSNP
rs945201213 242 dbSNP
rs1027953413 249 dbSNP
rs997891415 251 dbSNP
rs1200793176 255 dbSNP
rs913774056 256 dbSNP
rs1265489471 271 dbSNP
rs150017121 272 dbSNP
rs770247549 281 dbSNP
rs1404825682 282 dbSNP
rs1294501175 285 dbSNP
rs536559809 286 dbSNP
rs886588243 287 dbSNP
rs4929923 291 dbSNP
rs1241725603 296 dbSNP
rs962767441 297 dbSNP
rs1275790053 301 dbSNP
rs930712759 304 dbSNP
rs1479527759 314 dbSNP
rs905994334 315 dbSNP
rs547592630 318 dbSNP
rs1004502071 337 dbSNP
rs527526354 338 dbSNP
rs917143751 341 dbSNP
rs988664994 342 dbSNP
rs1383397094 345 dbSNP
rs562299403 347 dbSNP
rs925773714 357 dbSNP
rs1318017543 358 dbSNP
rs979004476 369 dbSNP
rs1400016536 370 dbSNP
rs953818461 371 dbSNP
rs1460762758 376 dbSNP
rs111998125 378 dbSNP
rs1377212824 379 dbSNP
rs976403135 386 dbSNP
rs901564920 394 dbSNP
rs1312287266 397 dbSNP
rs965066731 412 dbSNP
rs756757385 423 dbSNP
rs1228875706 427 dbSNP
rs751284915 428 dbSNP
rs1005107092 430 dbSNP
rs1305590577 432 dbSNP
rs1203594259 434 dbSNP
rs886700256 437 dbSNP
rs1458392629 441 dbSNP
rs1193173976 450 dbSNP
rs1200683520 459 dbSNP
rs1038805617 469 dbSNP
rs1171167791 473 dbSNP
rs1472498320 477 dbSNP
rs1007622997 479 dbSNP
rs184059365 482 dbSNP
rs1027818551 484 dbSNP
rs1170207761 486 dbSNP
rs995447033 489 dbSNP
rs1466925841 497 dbSNP
rs905940559 499 dbSNP
rs1448079692 501 dbSNP
rs1044481240 515 dbSNP
rs1056199406 517 dbSNP
rs1279892989 523 dbSNP
rs1359808634 531 dbSNP
rs1213860616 535 dbSNP
rs1278611959 554 dbSNP
rs950155925 555 dbSNP
rs939218440 559 dbSNP
rs895792947 568 dbSNP
rs1442019570 570 dbSNP
rs1210944638 571 dbSNP
rs980909552 572 dbSNP
rs1485183221 573 dbSNP
rs1193573805 580 dbSNP
rs532362046 585 dbSNP
rs371415508 587 dbSNP
rs963026421 588 dbSNP
rs1424063416 594 dbSNP
rs1228661126 600 dbSNP
rs777514623 611 dbSNP
rs1366972376 614 dbSNP
rs191548060 615 dbSNP
rs1414632371 616 dbSNP
rs186745011 625 dbSNP
rs909923976 629 dbSNP
rs112469751 633 dbSNP
rs982788898 634 dbSNP
rs934555587 638 dbSNP
rs951580558 652 dbSNP
rs561288147 661 dbSNP
rs541599361 665 dbSNP
rs1221494838 671 dbSNP
rs978610824 684 dbSNP
rs1430412173 686 dbSNP
rs1282344834 687 dbSNP
rs1344602108 693 dbSNP
rs1219970058 705 dbSNP
rs998741732 710 dbSNP
rs1359263105 715 dbSNP
rs932501362 725 dbSNP
rs1412696203 726 dbSNP
rs572581293 732 dbSNP
rs1489531956 736 dbSNP
rs920997209 737 dbSNP
rs1197736375 750 dbSNP
rs1246431815 760 dbSNP
rs1017762219 764 dbSNP
rs976476565 766 dbSNP
rs1007346274 767 dbSNP
rs1405227866 769 dbSNP
rs1418528894 770 dbSNP
rs903612929 772 dbSNP
rs965139926 774 dbSNP
rs558619182 777 dbSNP
rs1402968693 789 dbSNP
rs1392303061 791 dbSNP
rs1331471984 805 dbSNP
rs1437531174 811 dbSNP
rs1185032799 816 dbSNP
rs185075363 818 dbSNP
rs576066792 820 dbSNP
rs1238129387 821 dbSNP
rs1009203810 830 dbSNP
rs950987562 833 dbSNP
rs892361623 838 dbSNP
rs375626594 845 dbSNP
rs1206361419 848 dbSNP
rs758101614 852 dbSNP
rs1289697463 853 dbSNP
rs1056409515 857 dbSNP
rs994996245 863 dbSNP
rs1230853562 864 dbSNP
rs1438642912 872 dbSNP
rs970174365 873 dbSNP
rs1379182128 876 dbSNP
rs1285518587 881 dbSNP
rs1422744440 882 dbSNP
rs1162576775 885 dbSNP
rs1391251089 890 dbSNP
rs1445714352 891 dbSNP
rs536523110 892 dbSNP
rs1326558278 893 dbSNP
rs377472421 913 dbSNP
rs752474920 914 dbSNP
rs1354797384 916 dbSNP
rs1308377570 940 dbSNP
rs1379203731 948 dbSNP
rs1411388419 950 dbSNP
rs193251020 952 dbSNP
rs1284094835 954 dbSNP
rs895905987 956 dbSNP
rs1357623992 961 dbSNP
rs1053121930 968 dbSNP
rs1457048479 971 dbSNP
rs909981182 972 dbSNP
rs1239528320 975 dbSNP
rs982757793 980 dbSNP
rs1168518076 981 dbSNP
rs533985462 983 dbSNP
rs999296276 987 dbSNP
rs904427268 997 dbSNP
rs571391708 999 dbSNP
rs1414609689 1002 dbSNP
rs765075260 1016 dbSNP
rs566819355 1017 dbSNP
rs1473706839 1020 dbSNP
rs921072388 1024 dbSNP
rs552212501 1026 dbSNP
rs1257379244 1028 dbSNP
rs147921300 1050 dbSNP
rs1484209791 1054 dbSNP
rs1040910261 1061 dbSNP
rs943731996 1062 dbSNP
rs1203372920 1063 dbSNP
rs1322013951 1068 dbSNP
rs1394397386 1071 dbSNP
rs1018403000 1073 dbSNP
rs569683420 1077 dbSNP
rs1333563063 1078 dbSNP
rs1218920778 1085 dbSNP
rs967745408 1091 dbSNP
rs753753140 1093 dbSNP
rs1022019991 1096 dbSNP
rs1199408159 1101 dbSNP
rs1009171244 1107 dbSNP
rs1444066434 1107 dbSNP
rs1190930394 1111 dbSNP
rs781498101 1119 dbSNP
rs115153237 1125 dbSNP
rs1478012075 1141 dbSNP
rs773564107 1144 dbSNP
rs1426079391 1147 dbSNP
rs1464681611 1149 dbSNP
rs1172072850 1151 dbSNP
rs952505164 1156 dbSNP
rs1403001250 1161 dbSNP
rs1297449846 1168 dbSNP
rs1398369858 1177 dbSNP
rs1441716666 1187 dbSNP
rs1350722298 1193 dbSNP
rs1325809273 1200 dbSNP
rs919619014 1207 dbSNP
rs1459894466 1215 dbSNP
rs144825557 1218 dbSNP
rs1256144755 1219 dbSNP
rs1203367128 1224 dbSNP
rs1346489431 1224 dbSNP
rs970290488 1226 dbSNP
rs1023049746 1233 dbSNP
rs1488548803 1238 dbSNP
rs1014414801 1241 dbSNP
rs561606899 1242 dbSNP
rs1473898537 1246 dbSNP
rs1175614931 1258 dbSNP
rs767590415 1263 dbSNP
rs1378333711 1275 dbSNP
rs541411431 1276 dbSNP
rs1156890320 1277 dbSNP
rs1360471965 1283 dbSNP
rs1420778476 1285 dbSNP
rs1300433538 1288 dbSNP
rs998850356 1291 dbSNP
rs1385928878 1294 dbSNP
rs1301511884 1302 dbSNP
rs1332357298 1302 dbSNP
rs1237361194 1309 dbSNP
rs761841453 1310 dbSNP
rs774582234 1315 dbSNP
rs1044875678 1317 dbSNP
rs768139895 1318 dbSNP
rs1177040333 1319 dbSNP
rs941192199 1332 dbSNP
rs1263521138 1336 dbSNP
rs1488025053 1343 dbSNP
rs1190873685 1366 dbSNP
rs1268360855 1372 dbSNP
rs1488585927 1377 dbSNP
rs1176869102 1387 dbSNP
rs1379694281 1390 dbSNP
rs1440916656 1392 dbSNP
rs527879430 1399 dbSNP
rs1348552003 1406 dbSNP
rs904499884 1407 dbSNP
rs565347495 1416 dbSNP
rs1043076953 1417 dbSNP
rs1047207131 1420 dbSNP
rs996733489 1421 dbSNP
rs1230137243 1425 dbSNP
rs1315107145 1431 dbSNP
rs1305981168 1435 dbSNP
rs545077778 1436 dbSNP
rs1376978461 1442 dbSNP
rs1040898927 1443 dbSNP
rs1242295498 1445 dbSNP
rs977158465 1448 dbSNP
rs1219544377 1456 dbSNP
rs943879209 1460 dbSNP
rs1276769602 1464 dbSNP
rs1266927328 1465 dbSNP
rs1469994836 1469 dbSNP
rs1196975249 1471 dbSNP
rs911477931 1475 dbSNP
rs908265542 1495 dbSNP
rs1440371836 1500 dbSNP
rs1179503655 1503 dbSNP
rs1412301450 1507 dbSNP
rs1423691581 1510 dbSNP
rs1438993148 1527 dbSNP
rs1047227627 1534 dbSNP
rs978878038 1551 dbSNP
rs968884566 1553 dbSNP
rs1400447690 1557 dbSNP
rs1321374187 1564 dbSNP
rs10769933 1565 dbSNP
rs1300520354 1568 dbSNP
rs556161771 1592 dbSNP
rs956371581 1598 dbSNP
rs1314684568 1599 dbSNP
rs1034653134 1604 dbSNP
rs980406832 1608 dbSNP
rs1159058699 1615 dbSNP
rs969307685 1616 dbSNP
rs1206741225 1621 dbSNP
rs1235741967 1622 dbSNP
rs542622544 1626 dbSNP
rs1182937165 1630 dbSNP
rs188593976 1633 dbSNP
rs775787502 1639 dbSNP
rs1170365551 1640 dbSNP
rs770135870 1642 dbSNP
rs1173345130 1647 dbSNP
rs1210093215 1655 dbSNP
rs1358062945 1658 dbSNP
rs1448737571 1659 dbSNP
rs1304487861 1663 dbSNP
rs1031858122 1676 dbSNP
rs147336691 1679 dbSNP
rs968840159 1682 dbSNP
rs533854214 1683 dbSNP
rs1216545920 1684 dbSNP
rs1276661333 1696 dbSNP
rs749468800 1699 dbSNP
rs994211943 1711 dbSNP
rs1022007679 1722 dbSNP
rs1211491594 1723 dbSNP
rs996891733 1725 dbSNP
rs1260020258 1728 dbSNP
rs1210742395 1729 dbSNP
rs1197191091 1731 dbSNP
rs1193415274 1741 dbSNP
rs781692308 1743 dbSNP
rs1313669379 1751 dbSNP
rs901260490 1752 dbSNP
rs1189084848 1754 dbSNP
rs373180119 1756 dbSNP
rs546188248 1757 dbSNP
rs1423912656 1758 dbSNP
rs899735828 1766 dbSNP
rs1174927186 1778 dbSNP
rs1232359253 1779 dbSNP
rs1370599092 1781 dbSNP
rs1358573151 1785 dbSNP
rs1041019886 1786 dbSNP
rs1019564559 1787 dbSNP
rs373773844 1789 dbSNP
rs1359983559 1810 dbSNP
rs1298653442 1830 dbSNP
rs141142252 1831 dbSNP
rs911463297 1832 dbSNP
rs1273269703 1836 dbSNP
rs886911303 1843 dbSNP
rs1043321688 1845 dbSNP
rs183717821 1849 dbSNP
rs191437808 1854 dbSNP
rs1352162440 1857 dbSNP
rs1216510267 1859 dbSNP
rs1287257724 1872 dbSNP
rs988942815 1894 dbSNP
rs898284575 1896 dbSNP
rs569797516 1902 dbSNP
rs1433681752 1903 dbSNP
rs1194970233 1905 dbSNP
rs1377875433 1906 dbSNP
rs1390356943 1908 dbSNP
rs79809900 1909 dbSNP
rs187087336 1910 dbSNP
rs981780946 1918 dbSNP
rs993018003 1922 dbSNP
rs969488792 1923 dbSNP
rs938960811 1930 dbSNP
rs770690674 1935 dbSNP
rs1349534316 1941 dbSNP
rs924741298 1943 dbSNP
rs78793382 1946 dbSNP
rs1305802166 1947 dbSNP
rs548031699 1953 dbSNP
rs527981389 1954 dbSNP
rs1310587970 1956 dbSNP
rs1353418411 1960 dbSNP
rs1208452534 1967 dbSNP
rs1289539700 1968 dbSNP
rs746566946 1969 dbSNP
rs1209948674 1974 dbSNP
rs1235881309 1982 dbSNP
rs952607020 1983 dbSNP
rs570539272 1984 dbSNP
rs565451461 1985 dbSNP
rs1025447055 1989 dbSNP
rs1365491384 1991 dbSNP
rs1471738272 1995 dbSNP
rs1162441449 2000 dbSNP
rs143882371 2006 dbSNP
rs964014217 2010 dbSNP
rs1275561332 2014 dbSNP
rs531977209 2015 dbSNP
rs1019638294 2017 dbSNP
rs1229906815 2023 dbSNP
rs1008527221 2031 dbSNP
rs887032360 2033 dbSNP
rs550719915 2037 dbSNP
rs149474547 2044 dbSNP
rs1243169258 2045 dbSNP
rs1311621213 2046 dbSNP
rs1284043829 2049 dbSNP
rs758189796 2065 dbSNP
rs1371571209 2067 dbSNP
rs1255795939 2070 dbSNP
rs1316868120 2074 dbSNP
rs137940346 2077 dbSNP
rs1300435599 2082 dbSNP
rs573540629 2087 dbSNP
rs559895126 2088 dbSNP
rs1460213415 2092 dbSNP
rs1371987637 2095 dbSNP
rs1237887020 2098 dbSNP
rs34023476 2107 dbSNP
rs1043287692 2108 dbSNP
rs1168218244 2113 dbSNP
rs898225511 2125 dbSNP
rs530998983 2132 dbSNP
rs947826261 2133 dbSNP
rs1255275681 2138 dbSNP
rs1053188573 2140 dbSNP
rs1394852267 2152 dbSNP
rs1334049088 2155 dbSNP
rs938871692 2163 dbSNP
rs896128343 2170 dbSNP
rs1339455865 2182 dbSNP
rs1056065969 2189 dbSNP
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rs1252618417 2192 dbSNP
rs938894783 2194 dbSNP
rs114812342 2199 dbSNP
rs1199838213 2200 dbSNP
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rs977987318 2210 dbSNP
rs1294492102 2215 dbSNP
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rs577872496 2224 dbSNP
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rs182452408 2241 dbSNP
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rs907403378 2392 dbSNP
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rs79286915 2997 dbSNP
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rs1215023656 3011 dbSNP
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rs879158409 3011 dbSNP
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rs1345728140 3210 dbSNP
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rs11042013 3379 dbSNP
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rs1259791922 4210 dbSNP
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rs1345898338 5414 dbSNP
rs1202321857 5416 dbSNP
rs926934337 5426 dbSNP
rs372637366 5429 dbSNP
rs1046981462 5430 dbSNP
rs949606688 5436 dbSNP
rs752857910 5437 dbSNP
rs548183833 5441 dbSNP
rs1475801535 5442 dbSNP
rs958109845 5443 dbSNP
rs534355261 5444 dbSNP
rs1015136130 5454 dbSNP
rs1478798442 5456 dbSNP
rs986172581 5460 dbSNP
rs1387234900 5465 dbSNP
rs565939351 5470 dbSNP
rs1457272427 5471 dbSNP
rs953401812 5478 dbSNP
rs1388418662 5494 dbSNP
rs1386014074 5498 dbSNP
rs954935316 5500 dbSNP
rs1030397816 5515 dbSNP
rs765227928 5516 dbSNP
rs1484507544 5525 dbSNP
rs1286577584 5527 dbSNP
rs997856747 5531 dbSNP
rs1229017065 5536 dbSNP
rs1195819119 5537 dbSNP
rs961882361 5555 dbSNP
rs1340875891 5557 dbSNP
rs1268278200 5560 dbSNP
rs1218008679 5562 dbSNP
rs1453012716 5580 dbSNP
rs1179604297 5583 dbSNP
rs1410708393 5585 dbSNP
rs1472641806 5586 dbSNP
rs112589900 5591 dbSNP
rs1014713290 5592 dbSNP
rs1005893667 5593 dbSNP
rs1366716572 5595 dbSNP
rs887562379 5598 dbSNP
rs1055385052 5602 dbSNP
rs147915507 5603 dbSNP
rs1294955869 5609 dbSNP
rs1416824002 5611 dbSNP
rs1350029551 5616 dbSNP
rs1357604784 5617 dbSNP
rs1333785337 5628 dbSNP
rs755284791 5633 dbSNP
rs1046613548 5642 dbSNP
rs754054650 5644 dbSNP
rs1362068067 5657 dbSNP
rs1203386198 5662 dbSNP
rs949685476 5668 dbSNP
rs914032734 5671 dbSNP
rs1483176546 5678 dbSNP
rs1253440425 5688 dbSNP
rs192174520 5688 dbSNP
rs144813266 5689 dbSNP
rs1398736718 5691 dbSNP
rs1187996753 5693 dbSNP
rs936729085 5696 dbSNP
rs1370072077 5702 dbSNP
rs551050027 5713 dbSNP
rs1167720219 5715 dbSNP
rs1370249067 5716 dbSNP
rs1430615960 5717 dbSNP
rs1013774941 5719 dbSNP
rs1377109590 5720 dbSNP
rs766853136 5735 dbSNP
rs1395476005 5744 dbSNP
rs1169163797 5748 dbSNP
rs1314083303 5748 dbSNP
rs895539849 5756 dbSNP
rs759692501 5764 dbSNP
rs1056935776 5767 dbSNP
rs1418985301 5782 dbSNP
rs925384957 5787 dbSNP
rs1342498788 5790 dbSNP
rs936987286 5797 dbSNP
rs561902710 5803 dbSNP
rs953378288 5804 dbSNP
rs1204782125 5808 dbSNP
rs923284528 5810 dbSNP
rs542194782 5813 dbSNP
rs941915002 5817 dbSNP
rs1187748250 5822 dbSNP
rs1390524116 5827 dbSNP
rs1451054930 5837 dbSNP
rs1172832089 5839 dbSNP
rs1357584521 5840 dbSNP
rs1270342804 5847 dbSNP
rs1303495593 5852 dbSNP
rs962277946 5855 dbSNP
rs1014703103 5859 dbSNP
rs907804258 5861 dbSNP
rs77813967 5863 dbSNP
rs951780157 5870 dbSNP
rs983672081 5887 dbSNP
rs1366418865 5895 dbSNP
rs115811045 5899 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' accgacuuucugguUUCUUGUu 5'
                        ||||||| 
Target 5' ------------ucAAGAACAa 3'
 		1 - 10
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000299550.6 | 3UTR | UCAAGAACAAAUAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
84 hsa-miR-4677-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080553 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 2
MIRT089446 STAMBP STAM binding protein 2 2
MIRT135057 ADSS adenylosuccinate synthase 2 4
MIRT263519 RPS24 ribosomal protein S24 2 2
MIRT357966 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT384298 GOLT1B golgi transport 1B 2 2
MIRT407003 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT442312 UBE2Q1 ubiquitin conjugating enzyme E2 Q1 2 2
MIRT443782 ST13 ST13, Hsp70 interacting protein 2 2
MIRT446864 NBPF3 NBPF member 3 2 2
MIRT447642 RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 2 2
MIRT448464 SLC45A4 solute carrier family 45 member 4 2 2
MIRT449117 XRRA1 X-ray radiation resistance associated 1 2 2
MIRT450240 TRIM66 tripartite motif containing 66 2 2
MIRT450265 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450682 RPN2 ribophorin II 2 2
MIRT465594 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT481118 AZIN1 antizyme inhibitor 1 2 4
MIRT497203 CDH7 cadherin 7 2 4
MIRT502954 CCNT2 cyclin T2 2 2
MIRT506337 NUP54 nucleoporin 54 2 4
MIRT509224 KIF14 kinesin family member 14 2 6
MIRT514595 NDUFA12 NADH:ubiquinone oxidoreductase subunit A12 2 4
MIRT515392 ARHGAP21 Rho GTPase activating protein 21 2 4
MIRT525555 MTRNR2L7 MT-RNR2-like 7 2 6
MIRT525604 MTRNR2L3 MT-RNR2-like 3 2 4
MIRT533249 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT535778 MTRNR2L11 MT-RNR2-like 11 2 6
MIRT535799 MTRNR2L10 MT-RNR2-like 10 2 4
MIRT552784 YAF2 YY1 associated factor 2 2 2
MIRT556213 MB21D2 Mab-21 domain containing 2 2 2
MIRT558192 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT565809 SDCCAG3 serologically defined colon cancer antigen 3 2 2
MIRT566341 POLDIP2 DNA polymerase delta interacting protein 2 2 2
MIRT567792 DEK DEK proto-oncogene 2 2
MIRT572455 ZNF516 zinc finger protein 516 2 2
MIRT572582 HGFAC HGF activator 2 2
MIRT573357 PDE3A phosphodiesterase 3A 2 2
MIRT574649 LMAN2 lectin, mannose binding 2 2 2
MIRT608164 ERBB2 erb-b2 receptor tyrosine kinase 2 2 2
MIRT610690 FAM89A family with sequence similarity 89 member A 2 2
MIRT618457 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT621924 SYAP1 synapse associated protein 1 2 4
MIRT622279 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT624610 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT631040 TAS2R30 taste 2 receptor member 30 2 2
MIRT636153 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT638255 SIX1 SIX homeobox 1 2 2
MIRT638330 RCAN1 regulator of calcineurin 1 2 2
MIRT641621 KIAA1244 ARFGEF family member 3 3 3
MIRT644556 SPOP speckle type BTB/POZ protein 2 2
MIRT645900 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT649115 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT652244 TPI1 triosephosphate isomerase 1 2 2
MIRT657249 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT659857 CAPRIN1 cell cycle associated protein 1 2 4
MIRT665369 XIAP X-linked inhibitor of apoptosis 2 2
MIRT669214 CAND1 cullin associated and neddylation dissociated 1 2 2
MIRT682579 CPA4 carboxypeptidase A4 2 2
MIRT698725 STX6 syntaxin 6 2 4
MIRT699788 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT700290 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT710374 LMBR1 limb development membrane protein 1 2 2
MIRT710407 YTHDC1 YTH domain containing 1 2 2
MIRT710569 TNPO1 transportin 1 2 2
MIRT711384 PLEKHG4B pleckstrin homology and RhoGEF domain containing G4B 2 2
MIRT712042 STYK1 serine/threonine/tyrosine kinase 1 2 2
MIRT712717 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713288 ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 2 2
MIRT715649 USP6NL USP6 N-terminal like 2 2
MIRT716167 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716756 TRABD2A TraB domain containing 2A 2 2
MIRT718209 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT718361 SOX1 SRY-box 1 2 2
MIRT718806 SLC25A33 solute carrier family 25 member 33 2 2
MIRT719339 VGLL4 vestigial like family member 4 2 2
MIRT719671 SPDYE1 speedy/RINGO cell cycle regulator family member E1 2 2
MIRT720827 C1orf52 chromosome 1 open reading frame 52 2 2
MIRT722184 DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 2 2
MIRT722398 BCAS2 BCAS2, pre-mRNA processing factor 2 2
MIRT723460 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 2 2
MIRT724072 NCKAP1L NCK associated protein 1 like 2 2
MIRT724594 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT725234 PDE1B phosphodiesterase 1B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4677 Doxorubicin 31703 NSC123127 approved resistant High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-mir-4677 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-4677 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-4677-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4677-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4677-5p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4677-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-4677-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)

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