miRTarBase - #MIRT450358


—
pre-miRNA Information
pre-miRNA hsa-mir-4699   
Genomic Coordinates chr12: 81158388 - 81158461
Description Homo sapiens miR-4699 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4699-3p
Sequence 46| AAUUUACUCUGCAAUCUUCUCC |67
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN20804631 9 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1419816940 6 dbSNP
rs919201645 9 dbSNP
rs950685323 11 dbSNP
rs985212635 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SETD9   
Synonyms C5orf35
Description SET domain containing 9
Transcript NM_001171990   
Other Transcripts NM_153706   
Expression
Putative miRNA Targets on SETD9
3'UTR of SETD9
(miRNA target sites are highlighted)		 
>SETD9|NM_001171990|3'UTR
   1 CATGACTGTCTACGTAGAAAACTCCAAAGAATCAACAAAAAATCGCCTGTAACTAATAAGCACTTACAGCAAAGTTTCAG
  81 GAGACAAGGTTAATACACAAAAGTCAACTGCTTTCCTATATAACAGCAATGACGATTGAAATTTGAAATTTAAAACACAA
 161 GACCATTTACATTAGCACCCCAAAATTAAAATACTTGGGTATAAATATAACAAAATATATGCAAAATCTGTATGAGAAAA
 241 ACTACCAAACTCTGATTAAAGAAATCAAAGAAGAACTTAACGAAGAAATATTCTATGTTCATGGATAAGAAGACACTTCA
 321 TTGTTAAGACGTCAGTTCTTCCTAGCTTGATCTACCGATTTAGCACAAACCCAATCAAAATCCCAGCAAGTTATTTTGTG
 401 GGTATCAACAAACTAATTTTATATGGAAAGGCAAAATACCCAGAATAGCCAACATAGTATTACGAAAAGATAAAATCAAA
 481 GTACTGACAGTCCCCAACTTCAAGATTTACTATAAAGCTATAGTAATCAAGACAGTATGGTATTGGGGGGGTGGGGAAAG
 561 ACAAATAGATTAAAGGAACAGAAGAGAGAGCCCAGAAATACACCCCACGGGTACAGTCAACTGATCTTTAACCAAAGAAC
 641 AAAGGCAATTCCATGGAGGAAGAATGTCTTTTCCACAAATGATGCTAGTACAACTGGACATCCACATAAAAAAAAAGAGA
 721 AATGAATCTAGACATAGACCTTACTCCTTTCAAAAATTAACTCAAAATGGATTATAGACCTAAATGTAAATGCAAAACTA
 801 TAAAGCTCTTAGAAGACAACAGTAGAAAATCTAGGTGACCTTAGGTTTGGCAATGATTTTTTTAAATAAAATGCTAAAAG
 881 TGTGAACAATCAGATGAAATTCTAAGTTGGACATAATTAAAATTAAAAACTTTTACTCTGCAAACACACTGGCAAGGGAA
 961 TAAAAAGACAAGCCTCAAAATGGAAGAAAATATTTGCAAAACATGTATCTAATAAAGGACTAGAATCCAAAATATACAAA
1041 TAACTCCTTAAACTCAACAAGAATACAAACCACCCAATTAAAATCTGGGCAAAAAATCTGAATGAACACCTGAAAAAAAA
1121 ACACACAAATGGCAAATAAGCATAAGAAAAGATGGTCAACATCATCCTCATGAGGGAATTACAAATTAAAACAAAAAAGA
1201 GATGGCATTAAAAACTATTACAGTGGTGAAATCCAAAACACTGACACCACGAAATGCTGGTGAAGATGTAGAGCAATAGA
1281 ACTCATTCATTACTGCTGGAAATACTAAATGGAAGACAGTTTGGCAGTTTCATGCAAAATAAACACATTTTCACCATTCT
1361 ATCCTGTAATCCTTACTCCTTCGTATTTGGACAAATGAATTGAAAACCTACATCCACATAAAAACCTGCACATGAATATT
1441 TATAGCTTTAATGATAATTGCCAAAACTTGGAAGCAACCAAGGTATCCTCTAACAGGTAAGTGAATAAATACACTGGTAC
1521 ATCCATATAATGGAATACTATTCAGTGATAAAAAAAAGAATGAGCTATCAAGCCTCAAAACAAACACAAACAAACAAAAA
1601 ACCCCATGGTGAAAACTTAAATGCATATTGCTAAGTCAAAGAAGCCAATCTGAAAAGGCTGCATACTGTATAATTCCAAC
1681 TATATGACATTCTGAAATGGCAACAGTACAGACAATAAAAAGATCAATGGCTGCTAGAAGTTGTTAGGGAGGAGGGGGAA
1761 GGGACAGAGGGAAGAATAAAACATGAGATTTTCAGGTCAGTGAAGCTACTCTGTATGATACTGTACTGGTGGATATGTAT
1841 CATTATATATTTGCCAAAATCAATGGAATGTACAACATGAAGAGCGAACCTTAATGTAAACTATGGACTTTAATTAATAA
1921 TAATGTATCAATATTGGCTCATTAATTTTAACAAATGTACCACACTATTAATAATAAAAGATATAATAATAACTATAGGA
2001 GTGGAAGGGACATAAGGCAACTCAATACTTTCTGGTTAACTTTGCTGTAAACCTGAAACTGCTCTAAAAACTAAAGTCCA
2081 TTAGCTTTTATAAAAGCATAAAATACTGAGCTACCCACCAAAATGCTTCAGAACCCTGCCTTCCTTTAGGATGAAAAGAG
2161 GAAATAAACAGAGCATATTTTAATGAGAATTATTCCAAACTATTCTAATGAACATACATATGTATTTTGAATAGACTTTA
2241 GTTTTTAAGAGTAGTTTGAGGTTCACAGCAGAACTGAGCAGAAAGTAGAGAGTTCCTATATATCCTGAAGTTCTACTTTC
2321 AACATCCTACATTGGAGTAGTGTATCTGTTAAAAAAATCAATGTACCTACACTGACACATCAACACGCAAAGACCATGGT
2401 TTACATTAGGGTTTACTCTTGATGATGTACATTCTATGGGTTTTGACAAATGTGTAATTACATGTCTCTATCATTACAGT
2481 ATCATCATACAGGGTAGTTTCATTGCCCTGAAAATGGTCTGTGCTCTGCCTATTCACTTCTCCCTCCTGCCTCGGCCCTG
2561 GCACCAGTGATCTTTTTATTGTTTCCATAGTTTTGCTTTTTTCAGAATATCATATATTTGGAAAGCTACAGTATAGAGTC
2641 TTTTCAGATTGGCTTCCTTCACTTAATAATATGCATTTAGGATTTCACATGTCTCCTTGCGGCTTGTTAGCTCAATTTTT
2721 TTAGTGCTGAATAATAGTCCAGTTCTGGAGGTGCCACACTTTGTTTATCCTTTCACCTCAAAGGACATACAGGTTCCTTC
2801 CAAGTTTTAGCAATTATGATGAAAGCTGCTATAAACACTTTTGTGTGGACATAAGTTTTCAACGCATTTGGGTAAATGCC
2881 AAGGAACAGGATTATTTAATTATACGGTAAGAGTATGGTTGGTATTATAAGAAACTTCCAAGCTATCTTCCAACGTGGCC
2961 ATACCACTTTGCATTCCTACAGGCAATGAATAAGAGTTCCTGTTGCTTCCCATCCTTACCAGCATTTGGTGGTGTTAGAA
3041 TATGTTTCTAGTTGTTTTAGTAACAATGTTTCTTCCTTCAGCAACAGCTACTCTCACTGCTGAAGAGAAATTATTTTGAG
3121 GCCACAAACCTCTGAATGGCTTGATAAGAAAGGAAAGTCAAGGAGAAATGAGAGTGAGACTTCCTAAAAAATACAGTGAG
3201 TCCACTTTCTGTGTCAACTGTTTATGTGAAAAGATATGTGAATATACTATCAGCCATTCCATAAGCAGGCTGTGGCATCT
3281 CTGAGCAAATTAGTCATGTTAGAATGATATCTGAAATGCTATAAGGGAACATTAGTAAGTTGTTCTTTTTTCCTACTTAA
3361 GTGACTTATAAATTAGTTGCTTACATTCACTGTAACTAGTAATTTATCTGTACTAATCTGCCTAATTTACCTTATTCTTC
3441 TGTATAAGATGAAAATCTTTTCCAAAAAGCATGAGTGCATGTTCAAAGCTTCGGCATTCTTCTTCCGTCCATGCAGTCAT
3521 TCCTTCTAAGAAAAATTTTAAAATAAAATTTATGGGCCCCCAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccUCUUCUAA-----CGU---CUCAUUUAa 5'
            | ||| ||     |||   |:|||||| 
Target 5' acATAAGTTTTCAACGCATTTGGGTAAATg 3'
 2849 - 2878 140.00 -5.60
2 
miRNA  3' ccUCUUCUAACGUCUCAUUUAa 5'
            :||| |||    |||||:| 
Target 5' agGGAACATT----AGTAAGTt 3'
 3324 - 3341 138.00 -7.90
3 
miRNA  3' ccUCUUCUAACGUC-UCAUUUAa 5'
            ||||||   ||| || |||| 
Target 5' ttAGAAGACAACAGTAGAAAATc 3'
 809 - 831 136.00 -8.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM8578930 1 COSMIC
COSN26644603 18 COSMIC
COSN17519224 45 COSMIC
COSN28188689 52 COSMIC
COSN9953949 84 COSMIC
COSN26640786 90 COSMIC
COSN9953950 103 COSMIC
COSN20402146 166 COSMIC
COSN30086009 402 COSMIC
COSN17359839 610 COSMIC
COSN22356010 1108 COSMIC
COSN6922542 1396 COSMIC
COSN16864073 1435 COSMIC
COSN16004048 1864 COSMIC
COSN1317339 2853 COSMIC
COSN7947688 2961 COSMIC
COSN24715752 3309 COSMIC
COSM6712778 3438 COSMIC
COSM4702197 3439 COSMIC
COSM1069069 3451 COSMIC
COSM8823979 3467 COSMIC
COSM7634148 3474 COSMIC
COSM6171687 3485 COSMIC
COSM166670 3494 COSMIC
COSM8490005 3504 COSMIC
COSM8354888 3527 COSMIC
rs79354983 375 GWAS
rs11957276 958 GWAS
rs61154548 3558 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1454122010 1 dbSNP
rs1056051760 5 dbSNP
rs1434156247 7 dbSNP
rs555291708 8 dbSNP
rs758158916 9 dbSNP
rs1371614277 12 dbSNP
rs1469719595 14 dbSNP
rs576717850 15 dbSNP
rs1161773915 21 dbSNP
rs977317261 26 dbSNP
rs114930085 34 dbSNP
rs1372443085 37 dbSNP
rs965268565 38 dbSNP
rs1291767294 43 dbSNP
rs976606768 45 dbSNP
rs1387205362 46 dbSNP
rs1187616389 49 dbSNP
rs903341657 64 dbSNP
rs1215705672 67 dbSNP
rs923290096 68 dbSNP
rs1213399607 71 dbSNP
rs191053607 72 dbSNP
rs1316045429 79 dbSNP
rs1290228530 82 dbSNP
rs1298127279 84 dbSNP
rs998915428 87 dbSNP
rs762616444 89 dbSNP
rs796411505 113 dbSNP
rs1050840848 115 dbSNP
rs965358212 120 dbSNP
rs942105673 121 dbSNP
rs1291088709 122 dbSNP
rs997211672 125 dbSNP
rs1274032575 128 dbSNP
rs1164500860 131 dbSNP
rs1426747902 134 dbSNP
rs532609271 135 dbSNP
rs1211829642 136 dbSNP
rs535212313 137 dbSNP
rs1475677292 161 dbSNP
rs1485453811 162 dbSNP
rs1188230144 163 dbSNP
rs1057374332 165 dbSNP
rs702679 166 dbSNP
rs115437106 171 dbSNP
rs1228522581 174 dbSNP
rs1308683938 179 dbSNP
rs183072175 180 dbSNP
rs968537817 195 dbSNP
rs1459552772 200 dbSNP
rs1322263124 204 dbSNP
rs1345298257 206 dbSNP
rs1304159523 222 dbSNP
rs961169010 233 dbSNP
rs1432348572 235 dbSNP
rs547824568 244 dbSNP
rs537296822 247 dbSNP
rs981863690 251 dbSNP
rs1462619933 262 dbSNP
rs557760453 268 dbSNP
rs770751058 268 dbSNP
rs1168299041 269 dbSNP
rs1427820179 270 dbSNP
rs927656596 276 dbSNP
rs1429862906 278 dbSNP
rs569613201 282 dbSNP
rs545767552 283 dbSNP
rs1201346191 288 dbSNP
rs369402621 289 dbSNP
rs776219151 290 dbSNP
rs1489770851 292 dbSNP
rs1267742826 296 dbSNP
rs937741250 297 dbSNP
rs990925952 301 dbSNP
rs761450163 303 dbSNP
rs921206180 304 dbSNP
rs1226004779 313 dbSNP
rs914898939 316 dbSNP
rs1307445156 317 dbSNP
rs530864334 331 dbSNP
rs552071242 332 dbSNP
rs1344020743 350 dbSNP
rs1302835944 353 dbSNP
rs570591765 357 dbSNP
rs909164296 358 dbSNP
rs942132874 373 dbSNP
rs79354983 375 dbSNP
rs1178423197 381 dbSNP
rs1218085334 386 dbSNP
rs1041113606 387 dbSNP
rs1479374463 388 dbSNP
rs919444215 401 dbSNP
rs760126818 403 dbSNP
rs901306995 404 dbSNP
rs554266888 405 dbSNP
rs1247916396 417 dbSNP
rs1194745908 431 dbSNP
rs75529861 433 dbSNP
rs187374670 441 dbSNP
rs1188312622 448 dbSNP
rs1057306718 451 dbSNP
rs1321915472 453 dbSNP
rs139750432 456 dbSNP
rs888437363 464 dbSNP
rs1337778171 465 dbSNP
rs1305066026 484 dbSNP
rs1005893030 486 dbSNP
rs1408318729 493 dbSNP
rs1401935712 498 dbSNP
rs1338686928 501 dbSNP
rs1015484760 512 dbSNP
rs1405208727 519 dbSNP
rs149990871 522 dbSNP
rs576643684 526 dbSNP
rs1455095912 535 dbSNP
rs1361707480 539 dbSNP
rs1180639265 541 dbSNP
rs1031361202 545 dbSNP
rs998631157 545 dbSNP
rs900914568 547 dbSNP
rs758773809 549 dbSNP
rs1206105693 552 dbSNP
rs1028109033 567 dbSNP
rs1259258468 582 dbSNP
rs953988393 583 dbSNP
rs1383687358 584 dbSNP
rs984408381 588 dbSNP
rs1450473825 591 dbSNP
rs867519953 595 dbSNP
rs145206517 600 dbSNP
rs1318807907 601 dbSNP
rs959412874 604 dbSNP
rs1313822939 605 dbSNP
rs990565325 609 dbSNP
rs1413375582 610 dbSNP
rs371051042 615 dbSNP
rs577323762 617 dbSNP
rs192699257 626 dbSNP
rs1351755404 629 dbSNP
rs963685309 633 dbSNP
rs972071244 634 dbSNP
rs919368716 641 dbSNP
rs978992219 646 dbSNP
rs1352843635 664 dbSNP
rs1360461344 673 dbSNP
rs924827164 673 dbSNP
rs1294146769 681 dbSNP
rs117252139 682 dbSNP
rs1355722236 685 dbSNP
rs1270757290 697 dbSNP
rs1259594077 703 dbSNP
rs1484551136 704 dbSNP
rs1186663211 706 dbSNP
rs1233089222 707 dbSNP
rs1317414382 708 dbSNP
rs201015212 708 dbSNP
rs916043063 708 dbSNP
rs1041233063 709 dbSNP
rs901338065 716 dbSNP
rs113513062 718 dbSNP
rs934347826 719 dbSNP
rs1049804513 727 dbSNP
rs75022492 730 dbSNP
rs1005509826 732 dbSNP
rs1371809117 734 dbSNP
rs1193406822 736 dbSNP
rs1490595828 739 dbSNP
rs1174788598 746 dbSNP
rs1220518208 764 dbSNP
rs1451157408 765 dbSNP
rs900966744 775 dbSNP
rs832532 776 dbSNP
rs1277422521 779 dbSNP
rs1333986646 781 dbSNP
rs1336510813 787 dbSNP
rs562310981 793 dbSNP
rs540299112 807 dbSNP
rs1034873571 812 dbSNP
rs1376226612 818 dbSNP
rs781385236 819 dbSNP
rs1435286461 824 dbSNP
rs1235171874 826 dbSNP
rs1330346873 838 dbSNP
rs1407653479 846 dbSNP
rs1005483650 849 dbSNP
rs990990044 851 dbSNP
rs754337300 854 dbSNP
rs961304203 856 dbSNP
rs972093061 857 dbSNP
rs1197585292 864 dbSNP
rs1345718308 871 dbSNP
rs1026317571 876 dbSNP
rs1233617220 881 dbSNP
rs1436086925 883 dbSNP
rs1257421216 885 dbSNP
rs1022012237 895 dbSNP
rs377471469 903 dbSNP
rs960116353 907 dbSNP
rs1439150636 908 dbSNP
rs1373640669 915 dbSNP
rs144165320 925 dbSNP
rs78311630 926 dbSNP
rs1439470664 930 dbSNP
rs200363700 930 dbSNP
rs916094744 931 dbSNP
rs970609162 934 dbSNP
rs547606218 939 dbSNP
rs926228494 950 dbSNP
rs11957276 958 dbSNP
rs1414206522 962 dbSNP
rs114283563 972 dbSNP
rs1179167814 974 dbSNP
rs183309830 982 dbSNP
rs1172319895 994 dbSNP
rs976954813 1000 dbSNP
rs1397686343 1005 dbSNP
rs1462625028 1021 dbSNP
rs922781074 1038 dbSNP
rs932799859 1041 dbSNP
rs1050273015 1051 dbSNP
rs1285978974 1061 dbSNP
rs1049442681 1065 dbSNP
rs1480398261 1070 dbSNP
rs187680175 1078 dbSNP
rs374543625 1083 dbSNP
rs555422995 1091 dbSNP
rs115382349 1097 dbSNP
rs370717251 1099 dbSNP
rs897101981 1108 dbSNP
rs1164324322 1113 dbSNP
rs201465195 1113 dbSNP
rs1037063606 1122 dbSNP
rs551770779 1123 dbSNP
rs1181192529 1127 dbSNP
rs897140340 1129 dbSNP
rs79680734 1143 dbSNP
rs1257023132 1146 dbSNP
rs1291976925 1147 dbSNP
rs1247539156 1158 dbSNP
rs1356639243 1159 dbSNP
rs1468687981 1160 dbSNP
rs959999658 1161 dbSNP
rs1363145079 1168 dbSNP
rs192755859 1176 dbSNP
rs1398492728 1178 dbSNP
rs894980711 1188 dbSNP
rs1023495753 1195 dbSNP
rs832399 1196 dbSNP
rs1366770008 1202 dbSNP
rs1164042867 1227 dbSNP
rs1429079442 1235 dbSNP
rs1022545875 1243 dbSNP
rs967858741 1246 dbSNP
rs1421507363 1251 dbSNP
rs1191252939 1268 dbSNP
rs142214252 1275 dbSNP
rs549653150 1278 dbSNP
rs979374819 1282 dbSNP
rs1489667681 1286 dbSNP
rs541490361 1291 dbSNP
rs1264319446 1293 dbSNP
rs976977716 1296 dbSNP
rs1476593151 1306 dbSNP
rs922837922 1308 dbSNP
rs199689255 1310 dbSNP
rs372101852 1310 dbSNP
rs1340279487 1318 dbSNP
rs954436289 1323 dbSNP
rs985678559 1325 dbSNP
rs747846779 1328 dbSNP
rs956297209 1334 dbSNP
rs754095173 1337 dbSNP
rs941450041 1347 dbSNP
rs1293038779 1361 dbSNP
rs1462508182 1363 dbSNP
rs1037094608 1364 dbSNP
rs918603459 1377 dbSNP
rs771680058 1379 dbSNP
rs563261775 1382 dbSNP
rs78664304 1383 dbSNP
rs115656194 1384 dbSNP
rs1386330032 1385 dbSNP
rs1431129649 1386 dbSNP
rs1266172256 1398 dbSNP
rs1012570005 1401 dbSNP
rs910997081 1410 dbSNP
rs941116096 1412 dbSNP
rs115998761 1426 dbSNP
rs1317732823 1432 dbSNP
rs528422074 1437 dbSNP
rs1225678047 1444 dbSNP
rs1329574642 1445 dbSNP
rs903668052 1447 dbSNP
rs999251515 1448 dbSNP
rs1392103251 1450 dbSNP
rs1375606692 1453 dbSNP
rs1030681002 1459 dbSNP
rs965684581 1474 dbSNP
rs752299002 1476 dbSNP
rs1406682979 1481 dbSNP
rs896954238 1487 dbSNP
rs765783108 1507 dbSNP
rs1376724298 1522 dbSNP
rs145928405 1524 dbSNP
rs561829163 1527 dbSNP
rs1235791420 1539 dbSNP
rs138836485 1549 dbSNP
rs1457727859 1549 dbSNP
rs1335032544 1550 dbSNP
rs1202547624 1551 dbSNP
rs1029065478 1556 dbSNP
rs1343307468 1559 dbSNP
rs1263364693 1564 dbSNP
rs1255687627 1566 dbSNP
rs1487855965 1569 dbSNP
rs1205279109 1576 dbSNP
rs6882657 1577 dbSNP
rs1449251242 1579 dbSNP
rs745603110 1586 dbSNP
rs896387123 1586 dbSNP
rs548652500 1588 dbSNP
rs1446068116 1592 dbSNP
rs1014295300 1596 dbSNP
rs1383459678 1596 dbSNP
rs138962802 1603 dbSNP
rs1017120922 1608 dbSNP
rs962841320 1610 dbSNP
rs751226522 1629 dbSNP
rs972820323 1637 dbSNP
rs80191424 1638 dbSNP
rs918636231 1651 dbSNP
rs1378044273 1654 dbSNP
rs763553193 1659 dbSNP
rs1262955388 1663 dbSNP
rs1157540216 1665 dbSNP
rs992206622 1668 dbSNP
rs916556318 1671 dbSNP
rs1386479210 1672 dbSNP
rs1190205177 1673 dbSNP
rs1167341756 1677 dbSNP
rs184160583 1686 dbSNP
rs1206048882 1704 dbSNP
rs76601122 1705 dbSNP
rs1159277243 1715 dbSNP
rs1284078923 1715 dbSNP
rs956181302 1725 dbSNP
rs988918338 1728 dbSNP
rs1029898300 1731 dbSNP
rs1398075267 1738 dbSNP
rs561071248 1738 dbSNP
rs1318748434 1739 dbSNP
rs1297301423 1740 dbSNP
rs1355831453 1742 dbSNP
rs751953231 1743 dbSNP
rs189876760 1755 dbSNP
rs1310133468 1762 dbSNP
rs901632386 1766 dbSNP
rs997660124 1770 dbSNP
rs1424810189 1772 dbSNP
rs910849142 1774 dbSNP
rs1165551618 1778 dbSNP
rs1472114684 1781 dbSNP
rs58623268 1783 dbSNP
rs1194366839 1789 dbSNP
rs1478970350 1794 dbSNP
rs1028680620 1796 dbSNP
rs973821397 1806 dbSNP
rs1356414221 1812 dbSNP
rs535020230 1813 dbSNP
rs1215109348 1815 dbSNP
rs1292151861 1817 dbSNP
rs918442496 1818 dbSNP
rs888755778 1823 dbSNP
rs1285987104 1824 dbSNP
rs1270627576 1826 dbSNP
rs757594943 1828 dbSNP
rs1220307639 1835 dbSNP
rs1486183788 1836 dbSNP
rs1007154723 1837 dbSNP
rs252897 1838 dbSNP
rs1405145767 1839 dbSNP
rs1423474115 1841 dbSNP
rs114067491 1842 dbSNP
rs757180488 1842 dbSNP
rs972936372 1845 dbSNP
rs1321037859 1848 dbSNP
rs1044795521 1849 dbSNP
rs1365628080 1864 dbSNP
rs1168997218 1865 dbSNP
rs905833536 1866 dbSNP
rs1000704966 1867 dbSNP
rs1417993728 1873 dbSNP
rs1025810099 1875 dbSNP
rs1193340062 1878 dbSNP
rs1480897284 1886 dbSNP
rs960810928 1887 dbSNP
rs992636376 1894 dbSNP
rs1157945488 1915 dbSNP
rs1273698701 1916 dbSNP
rs1033119084 1928 dbSNP
rs891866947 1933 dbSNP
rs1223847556 1944 dbSNP
rs1369304050 1945 dbSNP
rs1272652017 1951 dbSNP
rs1435217890 1954 dbSNP
rs750539765 1957 dbSNP
rs1300882429 1958 dbSNP
rs1377910450 1959 dbSNP
rs13175470 1961 dbSNP
rs1308450735 1962 dbSNP
rs557010156 1964 dbSNP
rs780177796 1965 dbSNP
rs868536824 1972 dbSNP
rs925240239 1977 dbSNP
rs1238839801 1981 dbSNP
rs1470467918 1983 dbSNP
rs575291866 1983 dbSNP
rs141413663 1984 dbSNP
rs749281340 1986 dbSNP
rs985696723 1990 dbSNP
rs1456410311 1991 dbSNP
rs576099380 1991 dbSNP
rs962382435 1991 dbSNP
rs1212613219 1992 dbSNP
rs1204071822 1993 dbSNP
rs1313724302 1997 dbSNP
rs933102779 2007 dbSNP
rs1254633354 2008 dbSNP
rs974129483 2032 dbSNP
rs1483025362 2049 dbSNP
rs557500971 2052 dbSNP
rs918370642 2062 dbSNP
rs1310859600 2066 dbSNP
rs1443856926 2072 dbSNP
rs929706778 2074 dbSNP
rs992033883 2077 dbSNP
rs1240305514 2079 dbSNP
rs1437901960 2080 dbSNP
rs1449304034 2082 dbSNP
rs1361230069 2093 dbSNP
rs888794834 2097 dbSNP
rs572889344 2109 dbSNP
rs1381108909 2112 dbSNP
rs1160536356 2117 dbSNP
rs1437841172 2125 dbSNP
rs1379676229 2127 dbSNP
rs1455538842 2129 dbSNP
rs1173652763 2140 dbSNP
rs540502997 2143 dbSNP
rs1484133455 2145 dbSNP
rs1235496761 2150 dbSNP
rs947977072 2153 dbSNP
rs1015934924 2169 dbSNP
rs1237402727 2170 dbSNP
rs1287650870 2170 dbSNP
rs1358382375 2170 dbSNP
rs561963824 2171 dbSNP
rs1229371810 2172 dbSNP
rs903748120 2176 dbSNP
rs754885614 2192 dbSNP
rs1054376853 2198 dbSNP
rs778718244 2206 dbSNP
rs1300260873 2210 dbSNP
rs1010237214 2216 dbSNP
rs1359942213 2216 dbSNP
rs1029793138 2228 dbSNP
rs1425504538 2239 dbSNP
rs529062052 2240 dbSNP
rs748285006 2241 dbSNP
rs555578765 2242 dbSNP
rs747895817 2242 dbSNP
rs960843340 2243 dbSNP
rs1018552074 2253 dbSNP
rs544121761 2255 dbSNP
rs1299881441 2257 dbSNP
rs115068757 2272 dbSNP
rs1025313878 2279 dbSNP
rs1223076935 2284 dbSNP
rs761942377 2287 dbSNP
rs1228699588 2298 dbSNP
rs371884209 2303 dbSNP
rs951115765 2304 dbSNP
rs1341513477 2308 dbSNP
rs1198019291 2313 dbSNP
rs1398355774 2315 dbSNP
rs969420158 2323 dbSNP
rs1489397373 2330 dbSNP
rs1189371510 2331 dbSNP
rs1424419199 2333 dbSNP
rs1428888719 2334 dbSNP
rs56984944 2336 dbSNP
rs1348116271 2337 dbSNP
rs1163988605 2341 dbSNP
rs925272903 2342 dbSNP
rs252896 2343 dbSNP
rs191484823 2344 dbSNP
rs1191178387 2346 dbSNP
rs570480128 2350 dbSNP
rs1267530038 2351 dbSNP
rs544577286 2351 dbSNP
rs987993668 2365 dbSNP
rs528488656 2373 dbSNP
rs546843494 2387 dbSNP
rs923120036 2388 dbSNP
rs1264269545 2390 dbSNP
rs1221430737 2408 dbSNP
rs1319093343 2409 dbSNP
rs1260417688 2411 dbSNP
rs933115403 2412 dbSNP
rs1317538345 2413 dbSNP
rs773099646 2427 dbSNP
rs936581178 2438 dbSNP
rs1054386677 2452 dbSNP
rs1050185267 2456 dbSNP
rs770417553 2463 dbSNP
rs941781834 2472 dbSNP
rs1168279663 2476 dbSNP
rs1464856587 2478 dbSNP
rs1037402232 2488 dbSNP
rs1177783842 2492 dbSNP
rs1433728831 2494 dbSNP
rs776195818 2498 dbSNP
rs1266023798 2502 dbSNP
rs184500745 2504 dbSNP
rs1178659374 2506 dbSNP
rs1367590930 2508 dbSNP
rs1215465195 2514 dbSNP
rs1458627283 2515 dbSNP
rs868291195 2516 dbSNP
rs1280497948 2518 dbSNP
rs1316254348 2520 dbSNP
rs946147944 2531 dbSNP
rs1218280261 2534 dbSNP
rs1051106153 2543 dbSNP
rs1274099542 2545 dbSNP
rs994441500 2550 dbSNP
rs1007089212 2554 dbSNP
rs1246040539 2555 dbSNP
rs528333809 2562 dbSNP
rs1486160354 2567 dbSNP
rs1195492236 2571 dbSNP
rs896662336 2581 dbSNP
rs34224609 2585 dbSNP
rs1240881972 2587 dbSNP
rs1379040308 2589 dbSNP
rs1329209487 2597 dbSNP
rs1445855562 2606 dbSNP
rs1260802980 2610 dbSNP
rs557298716 2611 dbSNP
rs1040270013 2612 dbSNP
rs898788326 2614 dbSNP
rs1464248342 2615 dbSNP
rs188898952 2630 dbSNP
rs763605872 2631 dbSNP
rs181992604 2635 dbSNP
rs61672419 2635 dbSNP
rs797011862 2635 dbSNP
rs1013237438 2644 dbSNP
rs1024757060 2645 dbSNP
rs1163478964 2650 dbSNP
rs1202506338 2655 dbSNP
rs1349744945 2658 dbSNP
rs557854166 2665 dbSNP
rs1432153125 2667 dbSNP
rs1300388039 2668 dbSNP
rs1355942861 2670 dbSNP
rs1338878638 2681 dbSNP
rs1399819669 2683 dbSNP
rs969902836 2684 dbSNP
rs1381689432 2688 dbSNP
rs1000885926 2691 dbSNP
rs1226617627 2693 dbSNP
rs1289246082 2694 dbSNP
rs1317401590 2695 dbSNP
rs572826066 2697 dbSNP
rs1032321385 2701 dbSNP
rs540239939 2702 dbSNP
rs976707342 2707 dbSNP
rs77088245 2710 dbSNP
rs397963712 2716 dbSNP
rs58477254 2716 dbSNP
rs951708518 2724 dbSNP
rs1298432717 2729 dbSNP
rs988024755 2732 dbSNP
rs562349732 2734 dbSNP
rs987988763 2738 dbSNP
rs1470104177 2745 dbSNP
rs1369485352 2746 dbSNP
rs1238789101 2755 dbSNP
rs1422420332 2760 dbSNP
rs574321469 2760 dbSNP
rs766697333 2760 dbSNP
rs1194615336 2762 dbSNP
rs954646652 2769 dbSNP
rs1489339698 2770 dbSNP
rs1283997371 2771 dbSNP
rs946074422 2775 dbSNP
rs986403358 2784 dbSNP
rs555693433 2790 dbSNP
rs372378559 2818 dbSNP
rs574033066 2823 dbSNP
rs1354554607 2832 dbSNP
rs912682102 2833 dbSNP
rs1401490654 2838 dbSNP
rs1337910055 2839 dbSNP
rs1160945078 2842 dbSNP
rs941800618 2843 dbSNP
rs544374587 2845 dbSNP
rs1419464422 2852 dbSNP
rs762221142 2864 dbSNP
rs1342418259 2865 dbSNP
rs1417562697 2867 dbSNP
rs546474888 2867 dbSNP
rs1446127809 2871 dbSNP
rs1039876577 2873 dbSNP
rs1283623404 2879 dbSNP
rs898627580 2882 dbSNP
rs533168273 2885 dbSNP
rs1192575085 2888 dbSNP
rs767793954 2892 dbSNP
rs1269430294 2896 dbSNP
rs116066025 2899 dbSNP
rs1306972182 2901 dbSNP
rs149445907 2906 dbSNP
rs1025057442 2907 dbSNP
rs896772605 2908 dbSNP
rs1002326765 2912 dbSNP
rs1013822054 2913 dbSNP
rs564244015 2918 dbSNP
rs1269215905 2922 dbSNP
rs1436655642 2925 dbSNP
rs1332286475 2928 dbSNP
rs766417488 2929 dbSNP
rs1385613421 2944 dbSNP
rs1394334200 2951 dbSNP
rs528428830 2956 dbSNP
rs187281153 2961 dbSNP
rs252895 2962 dbSNP
rs1032353929 2977 dbSNP
rs1196800236 2981 dbSNP
rs1441001169 2983 dbSNP
rs986804563 2986 dbSNP
rs1200368110 2988 dbSNP
rs1456275340 2991 dbSNP
rs892469133 2998 dbSNP
rs1271900224 3003 dbSNP
rs1009562131 3006 dbSNP
rs1173485803 3014 dbSNP
rs1030325253 3015 dbSNP
rs10061565 3016 dbSNP
rs1333719009 3018 dbSNP
rs1232835160 3020 dbSNP
rs1401373629 3021 dbSNP
rs1332611053 3024 dbSNP
rs1449522732 3026 dbSNP
rs1449013237 3029 dbSNP
rs13436820 3030 dbSNP
rs1376006486 3033 dbSNP
rs532536569 3036 dbSNP
rs1170908687 3040 dbSNP
rs763670089 3040 dbSNP
rs1047252235 3044 dbSNP
rs1276592318 3045 dbSNP
rs1342569719 3051 dbSNP
rs569322538 3053 dbSNP
rs887396101 3068 dbSNP
rs1210510618 3075 dbSNP
rs1443788586 3076 dbSNP
rs143984113 3093 dbSNP
rs1275990048 3094 dbSNP
rs1273258923 3108 dbSNP
rs949576423 3114 dbSNP
rs1353789864 3122 dbSNP
rs1458826873 3127 dbSNP
rs963215228 3130 dbSNP
rs1046070853 3131 dbSNP
rs904827209 3132 dbSNP
rs1279345336 3134 dbSNP
rs1449137598 3136 dbSNP
rs1361178411 3143 dbSNP
rs1237068985 3145 dbSNP
rs1434228762 3145 dbSNP
rs1361218474 3146 dbSNP
rs1160477395 3159 dbSNP
rs1398913310 3160 dbSNP
rs1001977730 3162 dbSNP
rs551453208 3167 dbSNP
rs1182242636 3170 dbSNP
rs1457674251 3174 dbSNP
rs252894 3177 dbSNP
rs533770155 3192 dbSNP
rs918973065 3193 dbSNP
rs1186739374 3200 dbSNP
rs1477236923 3201 dbSNP
rs1488387026 3207 dbSNP
rs1172374728 3208 dbSNP
rs1213744830 3223 dbSNP
rs190279558 3224 dbSNP
rs1284165813 3235 dbSNP
rs992520078 3243 dbSNP
rs573969152 3246 dbSNP
rs1381757851 3250 dbSNP
rs1467407927 3251 dbSNP
rs1168560334 3254 dbSNP
rs1414417713 3263 dbSNP
rs879224062 3268 dbSNP
rs916900915 3271 dbSNP
rs1300120938 3278 dbSNP
rs1399609793 3283 dbSNP
rs1451644338 3284 dbSNP
rs57383905 3286 dbSNP
rs142181482 3288 dbSNP
rs577718458 3292 dbSNP
rs1307089825 3293 dbSNP
rs954632491 3293 dbSNP
rs1045290694 3316 dbSNP
rs148129981 3318 dbSNP
rs199946992 3322 dbSNP
rs1019627964 3323 dbSNP
rs10684065 3323 dbSNP
rs33912021 3324 dbSNP
rs202205235 3325 dbSNP
rs964369241 3327 dbSNP
rs1242090249 3332 dbSNP
rs180973461 3336 dbSNP
rs1323977380 3341 dbSNP
rs1271695282 3343 dbSNP
rs936802071 3344 dbSNP
rs1278616686 3353 dbSNP
rs1319514229 3354 dbSNP
rs1216438021 3356 dbSNP
rs1257088074 3357 dbSNP
rs1053879558 3361 dbSNP
rs892585148 3371 dbSNP
rs1280319515 3375 dbSNP
rs750266148 3381 dbSNP
rs777281490 3382 dbSNP
rs760078147 3385 dbSNP
rs1227155446 3389 dbSNP
rs765717092 3399 dbSNP
rs1361319567 3402 dbSNP
rs369897045 3407 dbSNP
rs1343736554 3409 dbSNP
rs776041663 3413 dbSNP
rs1294090521 3417 dbSNP
rs1438566882 3422 dbSNP
rs931382070 3438 dbSNP
rs763374939 3444 dbSNP
rs376221710 3462 dbSNP
rs1465935326 3469 dbSNP
rs369237548 3473 dbSNP
rs1188138975 3474 dbSNP
rs949628450 3480 dbSNP
rs755594980 3490 dbSNP
rs111482260 3491 dbSNP
rs765850762 3493 dbSNP
rs753806589 3507 dbSNP
rs1392233404 3508 dbSNP
rs1422867317 3513 dbSNP
rs1164169479 3519 dbSNP
rs754863050 3521 dbSNP
rs368716298 3523 dbSNP
rs1251613603 3525 dbSNP
rs755889936 3528 dbSNP
rs890439770 3529 dbSNP
rs778799987 3536 dbSNP
rs747978329 3540 dbSNP
rs1434055556 3543 dbSNP
rs376916899 3545 dbSNP
rs564237801 3548 dbSNP
rs747186999 3550 dbSNP
rs252893 3552 dbSNP
rs776800831 3553 dbSNP
rs1042211474 3557 dbSNP
rs61154548 3558 dbSNP
rs1259360272 3564 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000285947.2 | 3UTR | UCAAGUAAAUUCAGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
88 hsa-miR-4699-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056239 RAB18 RAB18, member RAS oncogene family 2 2
MIRT080536 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 2
MIRT095600 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT128911 KMT2A lysine methyltransferase 2A 2 2
MIRT161904 FXR1 FMR1 autosomal homolog 1 2 4
MIRT177614 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 4
MIRT231364 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT285164 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT307337 SEC22C SEC22 homolog C, vesicle trafficking protein 2 2
MIRT317083 DEK DEK proto-oncogene 2 2
MIRT347692 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT358438 STC2 stanniocalcin 2 2 2
MIRT362592 PURB purine rich element binding protein B 2 4
MIRT441441 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT445264 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) 2 4
MIRT447097 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT449013 ANKRD17 ankyrin repeat domain 17 2 2
MIRT450358 SETD9 SET domain containing 9 2 2
MIRT454976 MYC MYC proto-oncogene, bHLH transcription factor 2 2
MIRT461922 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT465191 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT467685 SLC38A2 solute carrier family 38 member 2 2 4
MIRT468003 SKI SKI proto-oncogene 2 2
MIRT473127 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT476370 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477067 FAM208B family with sequence similarity 208 member B 2 4
MIRT479950 CBX4 chromobox 4 2 4
MIRT481092 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 2 2
MIRT481932 ANKRD11 ankyrin repeat domain 11 2 12
MIRT482239 AHCY adenosylhomocysteinase 2 2
MIRT485804 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT492026 TWF1 twinfilin actin binding protein 1 2 2
MIRT494389 CALM3 calmodulin 3 2 2
MIRT504115 GPR158 G protein-coupled receptor 158 2 2
MIRT506346 NUP54 nucleoporin 54 2 4
MIRT510081 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 4
MIRT521019 SLC8A1 solute carrier family 8 member A1 2 2
MIRT524709 BTBD3 BTB domain containing 3 2 2
MIRT524989 AGO2 argonaute 2, RISC catalytic component 2 6
MIRT525003 ACVR1B activin A receptor type 1B 2 2
MIRT528064 OLAH oleoyl-ACP hydrolase 2 2
MIRT528865 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT532182 DOCK7 dedicator of cytokinesis 7 2 2
MIRT533592 TOB1 transducer of ERBB2, 1 2 6
MIRT538835 C16orf70 chromosome 16 open reading frame 70 2 2
MIRT539488 ACVR1C activin A receptor type 1C 2 2
MIRT539542 ABCD2 ATP binding cassette subfamily D member 2 2 2
MIRT542123 VENTX VENT homeobox 2 2
MIRT542993 ELOVL5 ELOVL fatty acid elongase 5 2 2
MIRT543067 ATXN7L3B ataxin 7 like 3B 2 2
MIRT543370 CYB5B cytochrome b5 type B 2 2
MIRT545080 TSEN34 tRNA splicing endonuclease subunit 34 2 2
MIRT545258 TRIM36 tripartite motif containing 36 2 4
MIRT549144 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT549403 AKAP1 A-kinase anchoring protein 1 2 2
MIRT552143 MRPL34 mitochondrial ribosomal protein L34 2 2
MIRT554781 RHEBP1 RHEB pseudogene 1 2 4
MIRT555991 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT556425 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT558325 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT561357 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 2
MIRT562240 HMGB1 high mobility group box 1 2 2
MIRT562269 GOLT1B golgi transport 1B 2 2
MIRT564020 FAM103A1 family with sequence similarity 103 member A1 2 2
MIRT564832 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT565350 TMED2 transmembrane p24 trafficking protein 2 2 2
MIRT565678 SET SET nuclear proto-oncogene 2 2
MIRT576547 Txlna taxilin alpha 2 2
MIRT609358 ZNF664 zinc finger protein 664 2 2
MIRT610646 CTGF connective tissue growth factor 2 2
MIRT624681 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT637118 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT639955 PRRC2B proline rich coiled-coil 2B 2 2
MIRT644051 WWC2 WW and C2 domain containing 2 2 2
MIRT650463 SLC35B1 solute carrier family 35 member B1 2 2
MIRT651094 ZNF516 zinc finger protein 516 2 2
MIRT655268 PER2 period circadian clock 2 2 2
MIRT657450 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT692248 POLR3F RNA polymerase III subunit F 2 2
MIRT695239 PBK PDZ binding kinase 2 2
MIRT696024 NDUFS3 NADH:ubiquinone oxidoreductase core subunit S3 2 2
MIRT698486 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT700581 PRSS22 protease, serine 22 2 2
MIRT704540 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT704723 CEP135 centrosomal protein 135 2 2
MIRT705194 BTG1 BTG anti-proliferation factor 1 2 2
MIRT710286 CSNK1G3 casein kinase 1 gamma 3 2 2
MIRT719623 TUBGCP3 tubulin gamma complex associated protein 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4699 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4699-3p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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