miRTarBase - #MIRT450403


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pre-miRNA Information
pre-miRNA hsa-mir-3123   
Genomic Coordinates chr1: 241132272 - 241132346
Description Homo sapiens miR-3123 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3123
Sequence 49| CAGAGAAUUGUUUAAUC |65
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 + 241132323 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1453759221 1 dbSNP
rs968575171 5 dbSNP
rs979407933 9 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM47   
Synonyms BCMP1, TM4SF10, VAB-9
Description transmembrane protein 47
Transcript NM_031442   
Expression
Putative miRNA Targets on TMEM47
3'UTR of TMEM47
(miRNA target sites are highlighted)		 
>TMEM47|NM_031442|3'UTR
   1 AACCAATAGTCTCAAAGTAAAAACAACCACCACCATCCAACAAAAGGATTACGTCTGCATCTTTTCTAACTTACTATTTT
  81 CTAAAACACTTGTGGAGCATCAAGCAGTTTGCTCAGTTGATTTAATCTTTTTTGCCTTTTGGCTGTCAACATCATAACCA
 161 GCTTTTACATCCATTTTAGAAATCTGCACAAATTAAGAGAGCTGATTAGACATAGGCAAATGCTGCAAACTTCCAATATG
 241 TTCATATCGTTTTTCTTGACAAATGAAGGGTCTATATGACAGCAACCATTGTGAGAAACTAGTTGGAATGAGATTTGCCT
 321 CAATCTCCTATTGCCTGCAGGGGAGCAGTTGGCATAAGCAACATTTAGAAGTTCCTTTGCGCTGACAAGGATTCCACTGT
 401 TAGAGCCCTTACCGCCTGCTTATCCTACCCAATGACTACATTGGCTGTTGGTTATTTGCTTGAGTGAGCCCTTGAAAAAT
 481 GAACTGCCCTTCAGCATCTAATGGGAGTTGTGAATGTAACTGGTTAATGATACACATTCCACCTTCAGGAACACTCTTTT
 561 TAATGGGAGGTTATGCTTTGGCAATCAGCGTCTCCCTGGGAAGAGAGTCAAGACTTGGAGACATGTGCTTCTCATTATGT
 641 GGTTAGAAATTGGTGCCTCAGCCCTATCTAGACTGGGGAAAAATTGAGGATCTCTGTTTTTCCTGGGGCAAACAGAAAGA
 721 AATCTGCATGAGTTGCTTTTGTACCCTTTAAATCATTTGCCAAACATTGCAGCAAACAAGTGTGCGTATGTAACAAGCTT
 801 CACTGTTTTTATAGAAGGTGAACCATTAGTATAAATGGTAATAAGTTGTTCCCTAACCCTCCACATACATTTGCCTATCA
 881 CACGTAAAATTAATATTTACTCTAGTGAAGTGGTTTGAGCACTAACCTTGTACACATTGTTAAGAGGCTTAGATTGGTAT
 961 TCATACTTATTTACCATACAAAAGTATGGTACCTTAAAGCTTTTGCTCTATGTTCTTTACTGTTTCACTGGAAAGTGTCA
1041 ATAGAGTTGCCTAAGAATAAAAATTGAAATGGTGTTAATCTGAAAATTAATGATTCTCTGTAAGCACTGTAGTTGAAAAG
1121 AGAGTAGCAATTAGGATGATCATTTTGTGTAAAATTCATTAAAATAGAAGGCTGCTATTTTTTGCAAGTATTTTAAATGT
1201 CTTCATTTTTTTAAGAAAGGAATAGCGATAGATTTATATAAATATCTAAATGTCTCAGTAGAGGAGTAGAATTCATCTGG
1281 TTATCACCTGGTCCTCTGAAGTTAACTGATGGGCTAACCGATTTGTGCACACACTTAGGATGGATTTATGTTAAGGGAAT
1361 TACTTACTGACTGTTCAATGGAAGGAAGTATTAATAATAGGGAATAAGTTTGCAACTAATCTCATGCTGCAAACTTGTGT
1441 TAATTCTGTTTAATATACAAATTTGGATAGCTTAATTATAAACATATTTTTATATCAAATATACAGTTCTAATATAAAAG
1521 TTATAAATAATTATTTTTGTTAACAAAGACACTAAAACAGTATGTTCTGGTTTTGGCCCTCTTGCAGAAAGAAGCATTAG
1601 AAAAATTACTTTAAAAGTAGCTATATGTTACTGTATTGCAAAATCTGTTAAGAGCAGGACCACATCGATAGTATTTAATA
1681 ATTTGTTTTACCTCCCAAAACACAGTTCTTCTTTCAGCTTGTCTTAAGAATGGTTGCCAAAAACAACAGCCAAAAAAAAA
1761 AAACCTATTTTATTATCCAAATGCTAGAAAACACACATGAATTTTCTATAAAATCACGAATATGAAGTACCAGGTTTAGT
1841 CTTACTTTAGCAATGATAGACAAAAGCGAATAAATACATCACAGACAGAAACCTTTATAAAAATATATGATTCTATAAAG
1921 AATCATTAGAAATTATGAGTGGAAATTCTCCAGAAAGATAGTATTATAGAGTCTTTTGAAGCAATTTTTTGAGAAATAGT
2001 AAAATCTGGGGCAGAGTGTCTTGCAGTTAATTGCATATTGTCAGAGCAGCATGAGAAATATGATATTTGGATAGGGATTT
2081 CAGCAACTAAACATTCTCTGTTCTGAGATCTCTTTATTCCTGAATAATGAAAGAATAGTACTTTGGTGCTGACACCAATG
2161 AGGCACTTCTCTTGGTCCTAGTAGAGGATGCAGTGTACTGTTAAACCAATATCATCACATCTCGAGTCTTATCAAGTTTT
2241 CATTCTCTGTCAATATGACAAGCTCAAAGTGACAGAATATGTTATAGGTTGAAGCACACATATTTGCAGTTTACTGAAAA
2321 GTAGATTTCTTATGTGACTTTTTTCCCTTCTCAGCAAAGAGCCCTACACTAGATTTCTACCATCACTAATATTTGGAAGT
2401 ATTTCATTACTAACAATCTCAGTACAACATGAAAATTGTTGCTTCTCATCTAAAATACAATTTTGTCTATCAGAATAAAC
2481 ACAAGTGAAATTTTCACCTACATTAACATTATGTCTTTGCAGCTTTAGGTTTGTTAGATGTGTTCTTAAGCATAATTTTT
2561 AGCCACAAACCCATTGTTAGATAGATATCTATGGATATAGATCTACATCTATAGATATAGATATACACACATATATATAC
2641 TCACACACATATAGCATAAAATACTCAGCAGGGCTAGTTATTCCGATTTCTTGCACAATTATTTAGCTTTTTGTAAGTTC
2721 AACATGTAAATTTTAAAGACATAAATATAGAGAGACTTATGTGTTTGAATATAAATGATATATATGGATTAGCATGTACC
2801 TGTATATTATTAAACATGCAATGAACTGACTGGTAAGTGACGTCTAATTGTATGGCTAGCAATGTAATTTATTCAGACTG
2881 TATTTTTGTACAGAGCAGTGCACTCTAACCTATGCCTCTGTGTCCTCTTTAATGCCTAAAGCTGTGCCTAGAAATTTCAT
2961 CTGTCTTAAAAGTAAAATATACTTCATGCTGTTTATGCTATTAGTTTCTGTACTGCTATTCTATATTTATTATTTTTAAA
3041 TATATGACATGTTTACTACTTAAACATGAATTCATGGTATCCTGGTTATTTTTTTTAAGTCATCTGGGGGAAAACCTGTT
3121 TATCACTCCAGTGATTTTGAGTTTGCAGTTTCACAATCAGTTCTTCATTTCATGATTTTTGTAGTTGACATGAAGTCATC
3201 TATGTGGAAAAAAATAAAAATAAAAGTGATTTCACGGATGTGGTTTGAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuaAUUUGUUAAGAGAc 5'
             ||||| ||||||| 
Target 5' aacTAAAC-ATTCTCTg 3'
 2085 - 2100 157.00 -12.40
2 
miRNA  3' cuaAUUUGUUAAGAGAc 5'
             | ||::||||||| 
Target 5' aaaTTAATGATTCTCTg 3'
 1084 - 1100 154.00 -10.70
3 
miRNA  3' cuaauuuguUAAGAGAc 5'
                   ||||||| 
Target 5' caagttttcATTCTCTg 3'
 2233 - 2249 140.00 -9.30
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1469727207 3 dbSNP
rs747973639 4 dbSNP
rs780786653 14 dbSNP
rs1416204445 22 dbSNP
rs1360936971 24 dbSNP
rs755261595 26 dbSNP
rs1170718911 39 dbSNP
rs1255885485 45 dbSNP
rs1196665771 47 dbSNP
rs1481741058 48 dbSNP
rs142819183 52 dbSNP
rs1490655744 53 dbSNP
rs779067552 65 dbSNP
rs1219704047 70 dbSNP
rs138224316 73 dbSNP
rs180967771 76 dbSNP
rs576987212 93 dbSNP
rs1251913278 99 dbSNP
rs1483799377 101 dbSNP
rs1196913343 105 dbSNP
rs1427636920 107 dbSNP
rs1339684474 111 dbSNP
rs762109598 117 dbSNP
rs774807524 127 dbSNP
rs923542398 130 dbSNP
rs1408750385 142 dbSNP
rs769011157 144 dbSNP
rs10522027 150 dbSNP
rs1330238565 170 dbSNP
rs140561828 188 dbSNP
rs1344609291 191 dbSNP
rs1436870004 192 dbSNP
rs1299109264 201 dbSNP
rs1276427825 211 dbSNP
rs188063566 215 dbSNP
rs1213930451 217 dbSNP
rs908053638 222 dbSNP
rs979583564 226 dbSNP
rs754696715 239 dbSNP
rs946916418 243 dbSNP
rs1199980977 244 dbSNP
rs916829144 248 dbSNP
rs1307547696 249 dbSNP
rs751284785 274 dbSNP
rs952165994 275 dbSNP
rs1390827666 287 dbSNP
rs184200841 299 dbSNP
rs1161770690 317 dbSNP
rs1023674999 330 dbSNP
rs1372671119 332 dbSNP
rs1012688408 334 dbSNP
rs960729173 342 dbSNP
rs1387567274 360 dbSNP
rs5973217 362 dbSNP
rs1002809036 366 dbSNP
rs1429935546 370 dbSNP
rs1465862401 380 dbSNP
rs1017098426 381 dbSNP
rs1290445769 391 dbSNP
rs189414232 396 dbSNP
rs1211283721 407 dbSNP
rs1292461413 412 dbSNP
rs903061482 413 dbSNP
rs1041579837 414 dbSNP
rs1181757935 419 dbSNP
rs1367978620 426 dbSNP
rs1251689936 438 dbSNP
rs1180866944 442 dbSNP
rs1382474172 446 dbSNP
rs1399946231 448 dbSNP
rs1321006407 458 dbSNP
rs1390698018 462 dbSNP
rs1011405694 470 dbSNP
rs764721955 478 dbSNP
rs1450365529 487 dbSNP
rs1313668639 489 dbSNP
rs892929359 492 dbSNP
rs1050164333 494 dbSNP
rs1277457132 496 dbSNP
rs185301832 509 dbSNP
rs192152943 523 dbSNP
rs1343845452 528 dbSNP
rs1466592701 529 dbSNP
rs901108930 546 dbSNP
rs1255554497 551 dbSNP
rs1040405464 563 dbSNP
rs1254084289 569 dbSNP
rs1424514281 570 dbSNP
rs1189854329 573 dbSNP
rs1225093062 576 dbSNP
rs940956290 583 dbSNP
rs767524834 589 dbSNP
rs1472406365 590 dbSNP
rs908127437 599 dbSNP
rs984964590 613 dbSNP
rs952198086 623 dbSNP
rs1287600212 626 dbSNP
rs999934472 641 dbSNP
rs745372724 646 dbSNP
rs759566066 656 dbSNP
rs916682456 666 dbSNP
rs1044235285 676 dbSNP
rs1326314057 679 dbSNP
rs1334736162 684 dbSNP
rs990935202 687 dbSNP
rs1289361373 696 dbSNP
rs1331741022 704 dbSNP
rs961049144 718 dbSNP
rs1329621971 719 dbSNP
rs1035028159 724 dbSNP
rs774571615 725 dbSNP
rs771073066 730 dbSNP
rs978051397 732 dbSNP
rs1255974307 733 dbSNP
rs188060762 737 dbSNP
rs967320622 738 dbSNP
rs1020208613 755 dbSNP
rs780933172 759 dbSNP
rs1470485033 762 dbSNP
rs1482820588 765 dbSNP
rs892961804 785 dbSNP
rs972388482 786 dbSNP
rs772869158 792 dbSNP
rs1479359714 799 dbSNP
rs1175115716 817 dbSNP
rs1471326400 861 dbSNP
rs1029214243 864 dbSNP
rs961368353 874 dbSNP
rs1234178859 882 dbSNP
rs909619638 883 dbSNP
rs1369462200 884 dbSNP
rs1410049964 886 dbSNP
rs1441534287 894 dbSNP
rs984300371 894 dbSNP
rs1352691595 895 dbSNP
rs1403441238 900 dbSNP
rs1301055126 907 dbSNP
rs1313233630 910 dbSNP
rs1253602564 911 dbSNP
rs995942170 946 dbSNP
rs1249677867 949 dbSNP
rs1341632942 952 dbSNP
rs1205360264 954 dbSNP
rs901556583 959 dbSNP
rs1028082890 981 dbSNP
rs151307752 988 dbSNP
rs940359501 990 dbSNP
rs1226575150 992 dbSNP
rs886717035 992 dbSNP
rs1352737202 994 dbSNP
rs748001214 997 dbSNP
rs1267804920 998 dbSNP
rs1244118716 1002 dbSNP
rs1338959054 1003 dbSNP
rs781140513 1008 dbSNP
rs1429890782 1009 dbSNP
rs930870684 1010 dbSNP
rs1453853744 1029 dbSNP
rs916770021 1034 dbSNP
rs1388279915 1035 dbSNP
rs1457101400 1036 dbSNP
rs991354665 1040 dbSNP
rs1368820238 1044 dbSNP
rs1127632 1055 dbSNP
rs1389035308 1061 dbSNP
rs1296100702 1072 dbSNP
rs1365124884 1073 dbSNP
rs1229177072 1074 dbSNP
rs1276866136 1085 dbSNP
rs939457238 1086 dbSNP
rs928029312 1092 dbSNP
rs978125266 1093 dbSNP
rs1489379950 1108 dbSNP
rs377283098 1122 dbSNP
rs1158680475 1125 dbSNP
rs1450009109 1133 dbSNP
rs1189890606 1136 dbSNP
rs758112166 1147 dbSNP
rs1422854367 1157 dbSNP
rs183327083 1173 dbSNP
rs751300791 1177 dbSNP
rs1184985596 1184 dbSNP
rs1459720457 1186 dbSNP
rs1318971718 1188 dbSNP
rs1444865247 1206 dbSNP
rs990078793 1206 dbSNP
rs764338929 1213 dbSNP
rs80156780 1213 dbSNP
rs999527357 1213 dbSNP
rs1043801441 1218 dbSNP
rs1206568983 1226 dbSNP
rs1011386684 1227 dbSNP
rs1313775972 1243 dbSNP
rs1448706171 1250 dbSNP
rs1213305478 1251 dbSNP
rs895245194 1257 dbSNP
rs1267292457 1266 dbSNP
rs1465251757 1287 dbSNP
rs1284820944 1295 dbSNP
rs756461665 1320 dbSNP
rs1240689841 1330 dbSNP
rs939503265 1338 dbSNP
rs1182068034 1349 dbSNP
rs753167840 1350 dbSNP
rs1028834239 1352 dbSNP
rs1416976177 1353 dbSNP
rs1157337929 1369 dbSNP
rs1037718735 1376 dbSNP
rs996405651 1388 dbSNP
rs1458203025 1399 dbSNP
rs768012989 1421 dbSNP
rs1357489685 1422 dbSNP
rs1447312147 1429 dbSNP
rs909514319 1431 dbSNP
rs1019093479 1432 dbSNP
rs1433284571 1435 dbSNP
rs983814916 1436 dbSNP
rs866031292 1444 dbSNP
rs886121524 1446 dbSNP
rs1230144392 1448 dbSNP
rs1323415531 1452 dbSNP
rs1441780007 1455 dbSNP
rs1210165607 1458 dbSNP
rs1238727620 1469 dbSNP
rs1479442789 1470 dbSNP
rs759619188 1484 dbSNP
rs1404251674 1488 dbSNP
rs1456008923 1492 dbSNP
rs1251543779 1497 dbSNP
rs1473157045 1503 dbSNP
rs1161843533 1512 dbSNP
rs1363248940 1516 dbSNP
rs1423599822 1520 dbSNP
rs1414429578 1524 dbSNP
rs774408874 1529 dbSNP
rs1361015518 1539 dbSNP
rs1164926221 1547 dbSNP
rs953761707 1549 dbSNP
rs1350868241 1562 dbSNP
rs1411364763 1567 dbSNP
rs1272894867 1569 dbSNP
rs1444918037 1570 dbSNP
rs1389139360 1581 dbSNP
rs1219795402 1587 dbSNP
rs1048689671 1596 dbSNP
rs1476243948 1603 dbSNP
rs1203986478 1614 dbSNP
rs191548043 1616 dbSNP
rs965220010 1620 dbSNP
rs1245364954 1621 dbSNP
rs1477974965 1623 dbSNP
rs1192323737 1624 dbSNP
rs1031576659 1635 dbSNP
rs769503882 1643 dbSNP
rs777665329 1644 dbSNP
rs895351097 1660 dbSNP
rs1168047929 1665 dbSNP
rs16991441 1666 dbSNP
rs1431889401 1667 dbSNP
rs1321317197 1672 dbSNP
rs1330344456 1679 dbSNP
rs187918746 1682 dbSNP
rs1276606800 1685 dbSNP
rs1362962524 1692 dbSNP
rs768645567 1700 dbSNP
rs1223287504 1717 dbSNP
rs1341766728 1738 dbSNP
rs1343794973 1739 dbSNP
rs1272702233 1744 dbSNP
rs1216707389 1747 dbSNP
rs1363018048 1750 dbSNP
rs1274629751 1751 dbSNP
rs746579110 1759 dbSNP
rs1165929115 1760 dbSNP
rs1187954305 1761 dbSNP
rs779691932 1762 dbSNP
rs758169154 1763 dbSNP
rs112736796 1764 dbSNP
rs1161748195 1764 dbSNP
rs781635473 1764 dbSNP
rs945413541 1766 dbSNP
rs1297667324 1768 dbSNP
rs1366786757 1786 dbSNP
rs1242153560 1796 dbSNP
rs1283293354 1817 dbSNP
rs1304476421 1818 dbSNP
rs915263262 1830 dbSNP
rs182373634 1856 dbSNP
rs1275470516 1866 dbSNP
rs957345062 1867 dbSNP
rs921842417 1868 dbSNP
rs1208699047 1870 dbSNP
rs974628608 1885 dbSNP
rs1248722728 1890 dbSNP
rs966259698 1892 dbSNP
rs1448875282 1894 dbSNP
rs1018706623 1903 dbSNP
rs1004610308 1921 dbSNP
rs1473267292 1922 dbSNP
rs1166764299 1925 dbSNP
rs1171769153 1926 dbSNP
rs191427448 1941 dbSNP
rs1456610383 1943 dbSNP
rs756449828 1956 dbSNP
rs186330127 1958 dbSNP
rs1390183996 1962 dbSNP
rs1027282589 1963 dbSNP
rs371791196 1964 dbSNP
rs1482740320 1976 dbSNP
rs906722823 1980 dbSNP
rs41309595 1983 dbSNP
rs1037219406 1984 dbSNP
rs1295472849 1987 dbSNP
rs1228308114 1991 dbSNP
rs1327610787 1991 dbSNP
rs1269257117 1993 dbSNP
rs895437505 2005 dbSNP
rs1055765886 2008 dbSNP
rs940237739 2009 dbSNP
rs1198762534 2035 dbSNP
rs1255586955 2049 dbSNP
rs768628603 2051 dbSNP
rs1231406608 2053 dbSNP
rs1206804194 2056 dbSNP
rs1003742205 2074 dbSNP
rs1249340886 2081 dbSNP
rs1472174726 2096 dbSNP
rs1159645840 2105 dbSNP
rs1365398024 2106 dbSNP
rs906707497 2110 dbSNP
rs1171463871 2125 dbSNP
rs1402352602 2136 dbSNP
rs1416241397 2137 dbSNP
rs1305863582 2144 dbSNP
rs1349511092 2156 dbSNP
rs1042556548 2158 dbSNP
rs1289406634 2159 dbSNP
rs1338001671 2171 dbSNP
rs1217804641 2177 dbSNP
rs1326325349 2178 dbSNP
rs1255457683 2186 dbSNP
rs1048493453 2187 dbSNP
rs1213271095 2188 dbSNP
rs183025143 2198 dbSNP
rs932356907 2217 dbSNP
rs1284434950 2224 dbSNP
rs1405046333 2229 dbSNP
rs1349264323 2230 dbSNP
rs1295942924 2232 dbSNP
rs1182577307 2236 dbSNP
rs921003316 2237 dbSNP
rs41311509 2241 dbSNP
rs766414652 2249 dbSNP
rs915321499 2252 dbSNP
rs1354730900 2253 dbSNP
rs943857161 2269 dbSNP
rs1053827660 2271 dbSNP
rs932626741 2273 dbSNP
rs1166180406 2284 dbSNP
rs1467997926 2287 dbSNP
rs924418690 2291 dbSNP
rs977296279 2304 dbSNP
rs756123329 2314 dbSNP
rs1299080496 2320 dbSNP
rs1431377996 2324 dbSNP
rs1399129722 2333 dbSNP
rs1385589790 2339 dbSNP
rs73465223 2351 dbSNP
rs975079963 2354 dbSNP
rs1472306431 2362 dbSNP
rs750628812 2366 dbSNP
rs1332191447 2367 dbSNP
rs965968682 2379 dbSNP
rs969007236 2386 dbSNP
rs911732012 2399 dbSNP
rs1295534849 2411 dbSNP
rs1341658341 2416 dbSNP
rs371561959 2430 dbSNP
rs1252853366 2436 dbSNP
rs1487417795 2439 dbSNP
rs1209039573 2447 dbSNP
rs1179005001 2460 dbSNP
rs950503170 2467 dbSNP
rs1481107700 2468 dbSNP
rs1450667869 2473 dbSNP
rs1267894419 2475 dbSNP
rs1455558071 2477 dbSNP
rs750518862 2481 dbSNP
rs989480486 2502 dbSNP
rs1389068881 2513 dbSNP
rs1449664524 2513 dbSNP
rs959395360 2552 dbSNP
rs1027355698 2563 dbSNP
rs1456658055 2570 dbSNP
rs12837282 2577 dbSNP
rs1033745368 2585 dbSNP
rs1395801932 2587 dbSNP
rs1443776658 2588 dbSNP
rs1266675248 2592 dbSNP
rs761515128 2602 dbSNP
rs1202196240 2608 dbSNP
rs1462889522 2611 dbSNP
rs1320150878 2612 dbSNP
rs1243745860 2614 dbSNP
rs959283500 2615 dbSNP
rs1228393844 2618 dbSNP
rs1033322355 2623 dbSNP
rs1016140958 2627 dbSNP
rs1053310431 2628 dbSNP
rs767680347 2640 dbSNP
rs888691994 2640 dbSNP
rs906744397 2645 dbSNP
rs1411093225 2652 dbSNP
rs1224936014 2658 dbSNP
rs1422908426 2665 dbSNP
rs1419089382 2681 dbSNP
rs776476783 2683 dbSNP
rs768766166 2685 dbSNP
rs1042612672 2687 dbSNP
rs1373645616 2688 dbSNP
rs760662806 2688 dbSNP
rs762059937 2691 dbSNP
rs1377190357 2695 dbSNP
rs1040707276 2696 dbSNP
rs943763515 2703 dbSNP
rs775532386 2705 dbSNP
rs1054266150 2710 dbSNP
rs1226482312 2712 dbSNP
rs1267362900 2713 dbSNP
rs1329780237 2722 dbSNP
rs977619519 2724 dbSNP
rs1482710507 2725 dbSNP
rs947282332 2726 dbSNP
rs1258644490 2744 dbSNP
rs914467469 2777 dbSNP
rs991427817 2781 dbSNP
rs1411826593 2798 dbSNP
rs958628952 2804 dbSNP
rs1337139522 2817 dbSNP
rs926582492 2819 dbSNP
rs1479153539 2825 dbSNP
rs982117232 2835 dbSNP
rs932721341 2841 dbSNP
rs1343334315 2845 dbSNP
rs1161419178 2861 dbSNP
rs367913227 2862 dbSNP
rs1287522629 2877 dbSNP
rs1373901432 2881 dbSNP
rs1413364708 2888 dbSNP
rs771730774 2902 dbSNP
rs1015714863 2912 dbSNP
rs1004779733 2918 dbSNP
rs1210999439 2921 dbSNP
rs1281941872 2930 dbSNP
rs1481889126 2932 dbSNP
rs1180410118 2938 dbSNP
rs1251610302 2939 dbSNP
rs1470781806 2950 dbSNP
rs1446668534 2955 dbSNP
rs952936191 2957 dbSNP
rs1041008596 2962 dbSNP
rs1244197405 2974 dbSNP
rs1027177601 2977 dbSNP
rs1432605387 2978 dbSNP
rs1174344492 2986 dbSNP
rs1377461990 2989 dbSNP
rs997033133 3015 dbSNP
rs1208472466 3019 dbSNP
rs944630973 3023 dbSNP
rs1307151680 3028 dbSNP
rs1354934199 3031 dbSNP
rs1262974201 3038 dbSNP
rs1444284598 3050 dbSNP
rs1272946451 3051 dbSNP
rs911804262 3051 dbSNP
rs1316924894 3055 dbSNP
rs1305024779 3057 dbSNP
rs1313926795 3066 dbSNP
rs1204053409 3073 dbSNP
rs774554321 3076 dbSNP
rs537169297 3079 dbSNP
rs1272739932 3087 dbSNP
rs745325397 3097 dbSNP
rs983288894 3103 dbSNP
rs1207080595 3111 dbSNP
rs778436613 3114 dbSNP
rs1245419271 3115 dbSNP
rs1040656014 3132 dbSNP
rs1194285855 3140 dbSNP
rs1397015998 3141 dbSNP
rs1447850317 3171 dbSNP
rs1007851499 3176 dbSNP
rs1419945902 3182 dbSNP
rs1411385929 3184 dbSNP
rs1321380324 3200 dbSNP
rs902928943 3215 dbSNP
rs1441610848 3221 dbSNP
rs1315521581 3222 dbSNP
rs770614141 3222 dbSNP
rs748518363 3223 dbSNP
rs781512761 3224 dbSNP
rs1434042566 3226 dbSNP
rs1041503076 3235 dbSNP
rs755517796 3236 dbSNP
rs374610705 3237 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_031442 | 3UTR | CAAUAUCAUCACAUCUCGAGUCUUAUCAAGUUUUCAUUCUCUGUCAAUAUGACAAGCUCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_031442 | 3UTR | UAUCAAGUUUUCAUUCUCUGUCAAUAUGACAAGCUCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_031442 | 3UTR | CAAGUUUUCAUUCUCUGUCAAUAUGACAAGCUCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_031442 | 3UTR | UCGAGUCUUAUCAAGUUUUCAUUCUCUGUCAAUAUGACAAGCUCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000275954.3 | 3UTR | UCAAGUUUUCAUUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
113 hsa-miR-3123 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058369 TBCEL tubulin folding cofactor E like 2 4
MIRT059816 EFNA1 ephrin A1 2 2
MIRT066850 TMEM19 transmembrane protein 19 2 2
MIRT071503 CALM1 calmodulin 1 2 6
MIRT073758 NUBP1 nucleotide binding protein 1 2 2
MIRT074324 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT094805 LMNB1 lamin B1 2 2
MIRT099173 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT099545 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT122643 E2F3 E2F transcription factor 3 2 2
MIRT180918 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 8
MIRT192844 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT224984 BAG4 BCL2 associated athanogene 4 2 2
MIRT246065 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT357085 PRRC1 proline rich coiled-coil 1 2 2
MIRT378170 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT441636 KDM5A lysine demethylase 5A 2 2
MIRT441802 BCAS1 breast carcinoma amplified sequence 1 2 2
MIRT443019 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443445 SERPINB4 serpin family B member 4 2 2
MIRT443661 SERPINB3 serpin family B member 3 2 2
MIRT443776 STS steroid sulfatase 2 2
MIRT444663 TSPAN14 tetraspanin 14 2 2
MIRT444924 KIAA1522 KIAA1522 2 2
MIRT445378 FOXO1 forkhead box O1 2 2
MIRT447920 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT449202 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT449713 TSPYL1 TSPY like 1 2 2
MIRT450403 TMEM47 transmembrane protein 47 2 2
MIRT450787 PAPOLG poly(A) polymerase gamma 2 2
MIRT451381 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT452507 WDR1 WD repeat domain 1 2 2
MIRT453264 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT454642 FAM83H family with sequence similarity 83 member H 2 2
MIRT455513 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT456709 LDB1 LIM domain binding 1 2 2
MIRT457231 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT459235 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT460553 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT461424 CTSL2 cathepsin V 2 3
MIRT462869 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT467178 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT469233 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT474125 LIPC lipase C, hepatic type 2 2
MIRT475509 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT478134 DHX36 DEAH-box helicase 36 2 2
MIRT481326 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT482003 AMOTL2 angiomotin like 2 2 2
MIRT482230 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT483436 RHOXF2B Rhox homeobox family member 2B 2 2
MIRT483824 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT492051 TNFSF9 TNF superfamily member 9 2 2
MIRT494114 DLX6 distal-less homeobox 6 2 2
MIRT498882 ZNF12 zinc finger protein 12 2 10
MIRT499674 NPHP3 nephrocystin 3 2 2
MIRT506932 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT509461 ZNF587 zinc finger protein 587 2 6
MIRT510048 AKR1B10 aldo-keto reductase family 1 member B10 2 4
MIRT514807 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT515217 CRCP CGRP receptor component 2 2
MIRT515486 INCENP inner centromere protein 2 4
MIRT517765 ZNF366 zinc finger protein 366 2 4
MIRT518216 TRMT10B tRNA methyltransferase 10B 2 2
MIRT519602 ZNF805 zinc finger protein 805 2 2
MIRT523570 GGCX gamma-glutamyl carboxylase 2 4
MIRT525795 SOD2 superoxide dismutase 2 2 2
MIRT533055 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT534218 SLC37A3 solute carrier family 37 member 3 2 4
MIRT535633 NR2E1 nuclear receptor subfamily 2 group E member 1 2 2
MIRT535863 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT536344 LEFTY1 left-right determination factor 1 2 2
MIRT537923 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT543114 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT544717 ZNF529 zinc finger protein 529 2 2
MIRT544847 BASP1 brain abundant membrane attached signal protein 1 2 4
MIRT545536 ARF3 ADP ribosylation factor 3 2 2
MIRT547124 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT548070 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548446 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548626 DAZAP1 DAZ associated protein 1 2 4
MIRT550259 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT551940 AKAP8 A-kinase anchoring protein 8 2 4
MIRT552511 ZIK1 zinc finger protein interacting with K protein 1 2 4
MIRT554015 SPIRE1 spire type actin nucleation factor 1 2 2
MIRT556647 KPNA2 karyopherin subunit alpha 2 2 4
MIRT559744 ACOX1 acyl-CoA oxidase 1 2 2
MIRT560393 TMEM254 transmembrane protein 254 2 2
MIRT562234 HMGB2 high mobility group box 2 2 2
MIRT563325 ORC4 origin recognition complex subunit 4 2 2
MIRT563697 RPS26 ribosomal protein S26 2 2
MIRT565066 USP25 ubiquitin specific peptidase 25 2 2
MIRT565349 TMED2 transmembrane p24 trafficking protein 2 2 2
MIRT565624 SLC31A1 solute carrier family 31 member 1 2 2
MIRT566379 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT567575 FEM1C fem-1 homolog C 2 2
MIRT569383 DDX20 DEAD-box helicase 20 2 2
MIRT570037 FAM228A family with sequence similarity 228 member A 2 2
MIRT573269 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT573912 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT620034 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT635606 ZWILCH zwilch kinetochore protein 2 2
MIRT644413 FRMD6 FERM domain containing 6 2 2
MIRT652528 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT656238 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT661373 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662530 PNPLA4 patatin like phospholipase domain containing 4 2 2
MIRT675551 MALL mal, T-cell differentiation protein like 2 2
MIRT693650 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT696348 SLC35D2 solute carrier family 35 member D2 2 2
MIRT705815 AKNA AT-hook transcription factor 2 2
MIRT707632 TARDBP TAR DNA binding protein 2 2
MIRT717902 COPS8 COP9 signalosome subunit 8 2 2
MIRT723626 SOBP sine oculis binding protein homolog 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3123 Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-mir-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3123 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3123 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)

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