miRTarBase - #MIRT451596


—
pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRPM7   
Synonyms ALSPDC, CHAK, CHAK1, LTRPC7, LTrpC-7, TRP-PLIK
Description transient receptor potential cation channel subfamily M member 7
Transcript NM_017672   
Expression
Putative miRNA Targets on TRPM7
3'UTR of TRPM7
(miRNA target sites are highlighted)		 
>TRPM7|NM_017672|3'UTR
   1 TATTAATATTACTGAATCATTGGTTTTGCCTGCACCTCACAGAAATGTTACTGTGTCACTTTTCCCTCGGGAGGAAATTG
  81 TTTGGTAATATAGAAAGGTGTATGCAAGTTGAATTTGCTGACTCCAGCACAGTTAAAAGGTCAATATTCTTTTGACCTGA
 161 TTAATCAGTCAGAAAGTCCCTATAGGATAGAGCTGGCAGCTGAGAAATTTTAAAGGTAATTGATAATTAGTATTTATAAC
 241 TTTTTAAAGGGCTCTTTGTATAGCAGAGGATCTCATTTGACTTTGTTTTGATGAGGGTGATGCTCTCTCTTATGTGGTAC
 321 AATACCATTAACCAAAGGTAGGTGTCCATGCAGATTTTATTGGCAGCTGTTTTATTGCCATTCAACTAGGGAAATGAAGA
 401 AATCACGCAGCCTTTTGGTTAAATGGCAGTCAAAATTTTCCTCAGTGTATTTAGTGTGTTCAGTGATGATATCACTGGTT
 481 CCCAACTAGATGCTTGTTGGCCACGGGAAGGGAAATGACTTGTTCTAATTCTAGGTTCACAGAGGTATGAGAAGCCTGAA
 561 CTGAAGACCATTTTCAAGAGGGACGGTATTTATGAATCAGGGTTAGGCTCCATATTTAAAGATAGAGCCAGTTTTTTTTT
 641 TTAAATAGAACCCAAATTGTGTAAAAATGTTAATTGGGTTTTTTAAACATTGTTTTATCAAGTCACTGTTAAGTAGAAGA
 721 AAGCCATGGTAAACTGATACATAACCTAAATTATAAAAGCAGAAACCTAACTCACTCGTCAAGGGAAGTTACCTTTTGAG
 801 GAAAGTTAAAGTACTTTTTTCCCTATCTGTATCTATAGCAACAACCCAGAACTTACAAACTTCTCCAAAGATTTTATTGA
 881 TTGTTATATCAAATCAGAATGTAAACATGAACTCTTGCATATATTTAAAATTGTGTTGGAACATTTGAACATGAATGCTG
 961 TTTGTGGTACTTAAGAAATTAATTCAGTTGGATTATCATTATGTGATACTGGCAGATTGCAGTGCAACCTTATGCCAATA
1041 AAATGTAATTTAACAGCCCCAGATATTGTTGAATATTCAACAATAACAAGAAAAGCTTTTCATCTAAGTTTTATGCTTTA
1121 ATTTTTTTTCTTTTTTTTTCTTTTTCTTTTGTTTCCTTGGTACTAATTTTAATTTTTATTTGGAAGGGAGCAGTATAAAG
1201 CTTATTTGTATTTAGTAGTGTATCTCATAGATACAGACAAGGCAAGAGATGATAAGCTGTTTAAATAGTGTTTAATATTG
1281 ATTGGGGGTGGGGAGAAAGAAAAAGTGTATTACTTAAAGATACTATATACGTTTTGTATATCATTAAATCTTTAAAAGAA
1361 ATGAAATAAATTTATTGTTTACAGATGTTTAGTGAGTTTAATCATTCTGAAAAATTATCTGACATTTTCAGGGTGTCAAT
1441 TTGAGTATCAGTTTTTTTAAATGAACCATTTGTATACCTGTGCTTTTGATCTCCTGTCCTGTACAATGTTTAAATTAATA
1521 CTGATTTCTTACTGTCTTCTTAGAAATCTGTTTTTTGTTAGGCCAAAAAAGGGCAATATGGGCTGTCTGTTGATTTTTAA
1601 TTTTATATTGATTATTTTCACAGGATTATAATAGTAGCTATACTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGC
1681 TCTGTTGCTTGGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACCACAACCGCCGCCTTCCGGGTTTAAGTGATTCTCCTG
1761 CCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACACGCCACCATGCCCAGCTAATTTTTATATTTTTAGTAGAGACAGGG
1841 TTTCACTATGTTGGCCAGTGTGGTCACAAACTCCTGACCTTGTGAGCCACCGCACCTGGCTGCTAACACTTATTTAGTGC
1921 CTACTGTGTACCAGACATTACTCTAAGTATTTCACATATATTAACCTACTTAATCCTTATAACAATGTTATAAAGAAATA
2001 GGTGTTATTATCCTGTTTTGCAGATTTGAAAGTCAAGGTGCTAGAGAGGTAAAGTAACGTCCATAAGATTCTTACGTTTA
2081 TTTAATAATAAGTAGCAACGGTAGGATTTGAACCCAGGCTGGCTGCCTTTCATCTATACTGTTTTTGTTTTGTTTTGTTT
2161 TGTTTTGTTTTGTTTTGTTTGTCTTGGTGGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTCGGGAGGCCAAGGCAG
2241 GTGGATCACTTGGGCTCAGGAGTTTGAGACCAGCCTGGGCAACATGGCAAAATCCTATCTCTGCTAAAAAAAAAAATACA
2321 AAAATTAGGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACAAGGTCAGG
2401 AGTTCGAGACCAGCCTGACCAACATAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCATGGCGGTGAG
2481 TGCCTGTAATCCCAGCTACTCAGGAGTCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAG
2561 ATCGTGCCATTGCGCTCCAGCCTGGGCAACAGTGCGAGACTCCGTCAAAAAAAAAAAAATAACTGGATGTGATGGTGTGC
2641 ACCTGTAGTTCCAGCTACTTGGGAGACTGAGGTGGGAGGATCACTTGAGCCTGGGAGACTGAGGCAGCAGTGAGCTGAGA
2721 TCATGCCACTGCTTTCCAACCTGGGCAACAGAGTGAGATCCTGTCTCAGAAAGAAAAAAAAAAAAAAGACAACCTCTTGC
2801 TCTGTTGCCCAGGCTGGAGTGTAGTAGCGTGATCATAGCTCACTGCAGCCGTAAACTCCTGGGCTCAAGCAATCCTCCTG
2881 CCACTGCCTCTTGATTAGGTGGAACCACAGGCATGCACCACCACACGTACCTAATTTTATATATATATTTTTTTATTTTT
2961 CATTTTTATTTATTTTTGTTTTTTTGAGTTGAAGTCTCACTCTGTTGCCCAGGCCGGAGTACAGTGGCACAATCTTGGCT
3041 CACTGCAACCTCTGCCTCCCAAGATCAAGCAATTCTCGTGCTTCAGCCTCCAAAGTAGCTGAGATTACAGGTACCCACCA
3121 TAATGCCTGGCTGATTTTTGTATTTTTCGTAGAGACAAGGTTTCACCTTGTTGGCCAGGCTGATCTCAAACTCCTGACCT
3201 CAAGTGATCCACCTCCCCCGGCTACCCAAAGTACTGGGATTATAGGTGTGAGCCACCATGCCTGGGTAACACCCAACTAA
3281 TTTTAAATATATATTTTGTAGAGATGGGGTCTAGCCTTGTTGCCCACGCTGGTCTCAAATTCCTGGGCTCAAGTGATCCT
3361 CTCGCCTGAGCTTCCCAAAGTGGTAGAATTGCAGGCATGAATTGCTGCACCCAGCCTCATCTGTGCTGTGAATTATGTGC
3441 TGTATTGACTCTCAAGCATGATGACCATTGGTGGTTTCTGTACCATTTCCTGTTACTTTACTGAAACACACCTACTCCAT
3521 TAACTTCTTGGGTTAAGTCTAGAAAGTAACAGTTTACTTGTAAACCACATTTCTTATCCCCAATAAGTATTTTTTTAAGA
3601 TTATTAAAGTTCATTATTACTACCCTATGATGTGAAAGTGTCATTTGCTTAATCTTTTTAATTTTTTATTCTCAACCTCA
3681 TCTTACTGAAGAGAATAAAACTCTTTTACCATATTCTTAAAATGTGGAATTCTCGGCCAGGTGCAGTGGCTCACGCCTGT
3761 AATTCCATCACTTTGGGAGGCCAAGGTGGGTGGATCATCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAA
3841 ACCCCGTCTCTACTAAAAATACAAAAATTATCTGGGTGTGGTGGCGCGTGCCTGTAGGCCCAGCTACTCAGGAGGCTGAG
3921 GCAGGAGAATTGCTTGAACCCAAGAGGTGGAGGTTGCAGTGAGCCTAGATTGCTGCCACTGCACTCCAGCCTGGGTGACA
4001 GCAGAACTCTGTCTCAAAAAAAAGATGTGGAATTCTTTTCTGCAAATGTTCTCTAATAGTATACCTTCTTCAGTCTGTCG
4081 ATATATGTATGCTATTATTTTACAAGTAATACATGTTGATTGTATTGGAAATTATAGAAAAGATTATATTGGATTGTTTA
4161 GAAAATATTTTTAAATGTGAAGAAAAATATAAAAATTACTCCCTTGTTCCACTTTCCCCACTCTCAAGTCAGACTATGTT
4241 GTTTTCATAGTTAGTAGCTAGCAGTCTACCCCACTAGATTATATGCTTCACAGAGGGAAGGGACCCTCAAGACTTCACTG
4321 GATTGAGTAGCACCCAATACCTTGCTTGCTGCCTGGTTTGTGATGGGCATACTGTAAGAAAAAAAAATCTGAATGACAAA
4401 ATGTTTTTCCATAATACCAGACTTCCTCTTGAAGAGATGGGTCGTAATGTTGTAGTCTTACATGCTTACGTAGACAATCA
4481 AAGCAAGAATACTCAATAAATGGCTATTTACCACTTGAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaCAGGGUGGGG-GUGAGGACa 5'
            | |: |:|:|  ||||||| 
Target 5' caGGCTGATCTCAAACTCCTGa 3'
 3176 - 3197 151.00 -17.60
2 
miRNA  3' uaCAGGGUGGGGGUGAGGACa 5'
            ||| ||     ||||||| 
Target 5' tgGTCACA----AACTCCTGa 3'
 1861 - 1877 145.00 -15.10
3 
miRNA  3' uacaggGUGGGGG--UGAGGACa 5'
                || || :  ||||||| 
Target 5' tcactgCAGCCGTAAACTCCTGg 3'
 2840 - 2862 145.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN4762205 29 COSMIC
COSN6275066 69 COSMIC
COSN28884640 105 COSMIC
COSN30178116 126 COSMIC
COSN31569996 149 COSMIC
COSN31481888 202 COSMIC
COSN31530488 204 COSMIC
COSN17520562 240 COSMIC
COSN1678562 249 COSMIC
COSN21945171 293 COSMIC
COSN31550668 302 COSMIC
COSN9625991 343 COSMIC
COSN31545269 407 COSMIC
COSN27312371 631 COSMIC
COSN20112050 632 COSMIC
COSN15980061 688 COSMIC
COSN7047591 726 COSMIC
COSN28699229 821 COSMIC
COSN31547296 870 COSMIC
COSN7047590 886 COSMIC
COSN25262371 894 COSMIC
COSN30165513 897 COSMIC
COSN31521623 1067 COSMIC
COSN31570450 1130 COSMIC
COSN31517482 1149 COSMIC
COSN31607654 1223 COSMIC
COSN31596813 1242 COSMIC
COSN31590649 1330 COSMIC
COSN31548046 1334 COSMIC
COSN26575639 1342 COSMIC
COSN31548884 1350 COSMIC
COSN31516631 1358 COSMIC
COSN6641967 1488 COSMIC
COSN17211401 1493 COSMIC
COSN22816687 1564 COSMIC
COSN8746163 1710 COSMIC
COSN22144482 1797 COSMIC
COSN5173982 2131 COSMIC
COSN23522125 2177 COSMIC
COSN8174366 2413 COSMIC
COSN24358742 3317 COSMIC
COSN23333557 3439 COSMIC
COSN5755105 3649 COSMIC
COSN23511501 3783 COSMIC
COSN8746162 4289 COSMIC
rs200162706 2316 GWAS
rs2414072 3313 GWAS
rs2414073 3317 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1479005977 2 dbSNP
rs1441765860 5 dbSNP
rs1240253918 8 dbSNP
rs767721020 9 dbSNP
rs1191884079 11 dbSNP
rs1490734544 15 dbSNP
rs760962338 20 dbSNP
rs546859077 21 dbSNP
rs202036850 29 dbSNP
rs1435286039 30 dbSNP
rs1305504420 32 dbSNP
rs1269660881 33 dbSNP
rs1201311580 34 dbSNP
rs767616639 35 dbSNP
rs1264206855 36 dbSNP
rs759867233 39 dbSNP
rs774261138 40 dbSNP
rs371056219 45 dbSNP
rs1431597641 49 dbSNP
rs776674613 50 dbSNP
rs1056975909 66 dbSNP
rs956262896 69 dbSNP
rs528336815 79 dbSNP
rs1302103513 86 dbSNP
rs570133767 91 dbSNP
rs1371036226 96 dbSNP
rs1235692907 97 dbSNP
rs1258217713 98 dbSNP
rs757833763 105 dbSNP
rs938386044 122 dbSNP
rs905546544 142 dbSNP
rs551707731 144 dbSNP
rs1366649214 145 dbSNP
rs1459282954 156 dbSNP
rs1212003491 162 dbSNP
rs1252464106 164 dbSNP
rs1044000678 165 dbSNP
rs1201082192 171 dbSNP
rs1021997238 178 dbSNP
rs931096694 196 dbSNP
rs1168320104 208 dbSNP
rs919642138 216 dbSNP
rs62021060 236 dbSNP
rs187001376 241 dbSNP
rs886315391 242 dbSNP
rs150859380 243 dbSNP
rs1420380820 244 dbSNP
rs764246134 249 dbSNP
rs1227304363 253 dbSNP
rs559455772 254 dbSNP
rs930580711 256 dbSNP
rs1231690308 257 dbSNP
rs1272859042 258 dbSNP
rs1469062502 260 dbSNP
rs899147279 262 dbSNP
rs921943905 270 dbSNP
rs1039057633 274 dbSNP
rs1270854054 275 dbSNP
rs1193752942 285 dbSNP
rs142022691 294 dbSNP
rs1184564825 297 dbSNP
rs1163942680 303 dbSNP
rs616256 304 dbSNP
rs541768539 309 dbSNP
rs1217834018 312 dbSNP
rs1286654234 312 dbSNP
rs1383551817 312 dbSNP
rs1331360868 313 dbSNP
rs1261329991 316 dbSNP
rs3803375 320 dbSNP
rs758856314 322 dbSNP
rs1010111213 323 dbSNP
rs1293036037 330 dbSNP
rs182397321 332 dbSNP
rs1247208582 333 dbSNP
rs1259065692 338 dbSNP
rs964865937 342 dbSNP
rs1205653803 344 dbSNP
rs1265337469 349 dbSNP
rs1361643021 350 dbSNP
rs79345642 352 dbSNP
rs1257929712 357 dbSNP
rs1002748599 358 dbSNP
rs146121721 369 dbSNP
rs184784104 374 dbSNP
rs752849608 375 dbSNP
rs192833612 377 dbSNP
rs780062736 380 dbSNP
rs1379038808 388 dbSNP
rs765307772 392 dbSNP
rs1363055277 395 dbSNP
rs73408913 402 dbSNP
rs764880478 402 dbSNP
rs898283036 406 dbSNP
rs1034775967 407 dbSNP
rs371184353 418 dbSNP
rs1305057623 423 dbSNP
rs1262126241 426 dbSNP
rs1003333769 433 dbSNP
rs1288227708 437 dbSNP
rs1345694528 449 dbSNP
rs1210024456 453 dbSNP
rs1280795980 453 dbSNP
rs1175262108 454 dbSNP
rs1249453710 456 dbSNP
rs117702683 462 dbSNP
rs1180010615 463 dbSNP
rs1392675857 465 dbSNP
rs1026180490 468 dbSNP
rs1173501201 469 dbSNP
rs1242388337 470 dbSNP
rs745651899 475 dbSNP
rs568262798 484 dbSNP
rs1296801086 490 dbSNP
rs939752637 496 dbSNP
rs1372934752 502 dbSNP
rs11070795 503 dbSNP
rs899102104 504 dbSNP
rs1324329151 505 dbSNP
rs1039418793 507 dbSNP
rs1051906929 514 dbSNP
rs142905752 517 dbSNP
rs922163453 522 dbSNP
rs148169232 527 dbSNP
rs551792820 529 dbSNP
rs544054061 533 dbSNP
rs1453200576 534 dbSNP
rs1193710160 536 dbSNP
rs373265010 542 dbSNP
rs914698896 544 dbSNP
rs1435408026 547 dbSNP
rs576812337 547 dbSNP
rs916171492 548 dbSNP
rs990849311 549 dbSNP
rs1333531464 551 dbSNP
rs530422108 567 dbSNP
rs1452758779 568 dbSNP
rs1294163154 576 dbSNP
rs1403691838 578 dbSNP
rs1369690357 583 dbSNP
rs144820951 584 dbSNP
rs956086813 585 dbSNP
rs1318257991 596 dbSNP
rs1220095614 599 dbSNP
rs1035505937 600 dbSNP
rs1270959069 619 dbSNP
rs927653038 621 dbSNP
rs1213826222 622 dbSNP
rs981844235 623 dbSNP
rs1489774473 624 dbSNP
rs1373487701 628 dbSNP
rs1026128135 632 dbSNP
rs3837683 632 dbSNP
rs994686805 642 dbSNP
rs1491010144 643 dbSNP
rs370467705 643 dbSNP
rs558320622 643 dbSNP
rs60298843 643 dbSNP
rs796341141 643 dbSNP
rs969977557 645 dbSNP
rs1428566789 646 dbSNP
rs1288146844 661 dbSNP
rs1341051160 667 dbSNP
rs529719876 674 dbSNP
rs1184078825 689 dbSNP
rs1461870704 694 dbSNP
rs1258314218 704 dbSNP
rs995217138 719 dbSNP
rs898161787 730 dbSNP
rs1333755467 735 dbSNP
rs536739845 740 dbSNP
rs557441328 741 dbSNP
rs1252050892 746 dbSNP
rs1051745960 761 dbSNP
rs1231112755 765 dbSNP
rs998879469 768 dbSNP
rs761720538 770 dbSNP
rs1255799971 775 dbSNP
rs1195302431 778 dbSNP
rs890847635 783 dbSNP
rs1416055758 786 dbSNP
rs1399099985 790 dbSNP
rs1158461638 798 dbSNP
rs541598336 804 dbSNP
rs1421410492 810 dbSNP
rs1043170517 811 dbSNP
rs1354536272 813 dbSNP
rs1448324165 814 dbSNP
rs1285525612 820 dbSNP
rs3784299 821 dbSNP
rs900795569 825 dbSNP
rs1355080034 827 dbSNP
rs565574815 829 dbSNP
rs1396770403 835 dbSNP
rs1056042224 845 dbSNP
rs1422542374 847 dbSNP
rs369652291 853 dbSNP
rs1160185373 856 dbSNP
rs1164180980 857 dbSNP
rs3784298 860 dbSNP
rs576371841 867 dbSNP
rs1370332489 868 dbSNP
rs927594582 876 dbSNP
rs1380953914 880 dbSNP
rs1441495785 883 dbSNP
rs1179765785 884 dbSNP
rs1374634293 884 dbSNP
rs914562173 886 dbSNP
rs1414881063 887 dbSNP
rs1335910146 888 dbSNP
rs981790411 900 dbSNP
rs1252839200 906 dbSNP
rs1440969108 907 dbSNP
rs950419611 918 dbSNP
rs1378400301 919 dbSNP
rs1489972967 921 dbSNP
rs554634701 924 dbSNP
rs1291496423 954 dbSNP
rs919018921 960 dbSNP
rs973193935 967 dbSNP
rs756280886 969 dbSNP
rs934759967 978 dbSNP
rs928710685 982 dbSNP
rs867156731 987 dbSNP
rs543130770 991 dbSNP
rs1441553332 999 dbSNP
rs1278220519 1003 dbSNP
rs986055514 1003 dbSNP
rs1478295611 1009 dbSNP
rs1417061457 1010 dbSNP
rs189219916 1010 dbSNP
rs1409024191 1011 dbSNP
rs1331528198 1020 dbSNP
rs796332238 1020 dbSNP
rs1030267088 1022 dbSNP
rs998818821 1027 dbSNP
rs1022762979 1044 dbSNP
rs974399168 1065 dbSNP
rs1337794710 1069 dbSNP
rs1218258923 1071 dbSNP
rs1259026010 1080 dbSNP
rs962634996 1081 dbSNP
rs1289887722 1083 dbSNP
rs1402690956 1093 dbSNP
rs1021658856 1096 dbSNP
rs1452128729 1104 dbSNP
rs1015685810 1110 dbSNP
rs1003866185 1116 dbSNP
rs1240146902 1122 dbSNP
rs890901797 1129 dbSNP
rs1303521093 1130 dbSNP
rs79092927 1130 dbSNP
rs1425390740 1131 dbSNP
rs1459522200 1132 dbSNP
rs1162162491 1135 dbSNP
rs11551655 1140 dbSNP
rs1390766031 1140 dbSNP
rs566094572 1140 dbSNP
rs894629850 1140 dbSNP
rs11551656 1146 dbSNP
rs1399848942 1146 dbSNP
rs572401109 1147 dbSNP
rs1056390819 1149 dbSNP
rs1264948153 1151 dbSNP
rs1453205185 1151 dbSNP
rs1211710943 1159 dbSNP
rs938921805 1160 dbSNP
rs1487908457 1161 dbSNP
rs907465992 1163 dbSNP
rs1029414266 1166 dbSNP
rs997719682 1180 dbSNP
rs1474034388 1181 dbSNP
rs746917759 1189 dbSNP
rs900678408 1191 dbSNP
rs1479569229 1197 dbSNP
rs1459057506 1217 dbSNP
rs1268373406 1218 dbSNP
rs1419582576 1219 dbSNP
rs1299211214 1220 dbSNP
rs1342702661 1231 dbSNP
rs1046063863 1232 dbSNP
rs928959068 1238 dbSNP
rs1039165630 1242 dbSNP
rs1247142232 1248 dbSNP
rs1020976713 1249 dbSNP
rs1453641802 1252 dbSNP
rs1352940222 1257 dbSNP
rs1217187796 1258 dbSNP
rs947648765 1265 dbSNP
rs941807107 1267 dbSNP
rs1199661823 1268 dbSNP
rs910370298 1271 dbSNP
rs1205040038 1275 dbSNP
rs1179084484 1278 dbSNP
rs986388708 1278 dbSNP
rs1439632221 1281 dbSNP
rs1159706788 1282 dbSNP
rs759365808 1286 dbSNP
rs552756817 1287 dbSNP
rs768041498 1296 dbSNP
rs1403230504 1301 dbSNP
rs1269478437 1305 dbSNP
rs548735356 1305 dbSNP
rs977347510 1306 dbSNP
rs1344490346 1307 dbSNP
rs1376180967 1307 dbSNP
rs1240795365 1309 dbSNP
rs1283454297 1309 dbSNP
rs934644512 1311 dbSNP
rs928764410 1312 dbSNP
rs1311462924 1318 dbSNP
rs1345630238 1321 dbSNP
rs1209225970 1323 dbSNP
rs186023312 1330 dbSNP
rs569155348 1331 dbSNP
rs948766003 1336 dbSNP
rs774226972 1338 dbSNP
rs1179956877 1344 dbSNP
rs1382750781 1354 dbSNP
rs1011642721 1361 dbSNP
rs1175837114 1372 dbSNP
rs768611554 1372 dbSNP
rs1389546224 1376 dbSNP
rs894568268 1377 dbSNP
rs1467787424 1385 dbSNP
rs149463399 1386 dbSNP
rs1003461532 1390 dbSNP
rs973901604 1393 dbSNP
rs1333424862 1401 dbSNP
rs1365457475 1405 dbSNP
rs1218522493 1407 dbSNP
rs1301731326 1413 dbSNP
rs962977019 1418 dbSNP
rs1216560606 1419 dbSNP
rs1015490601 1421 dbSNP
rs1428893064 1439 dbSNP
rs1257096491 1443 dbSNP
rs1318137616 1445 dbSNP
rs1200026919 1447 dbSNP
rs1173324351 1451 dbSNP
rs930246781 1456 dbSNP
rs1191065865 1459 dbSNP
rs1268502159 1468 dbSNP
rs1435348608 1476 dbSNP
rs1168968157 1478 dbSNP
rs1479238713 1483 dbSNP
rs73408910 1487 dbSNP
rs955018085 1493 dbSNP
rs1029299853 1498 dbSNP
rs1348137199 1503 dbSNP
rs536680880 1506 dbSNP
rs1294107511 1518 dbSNP
rs1369624628 1520 dbSNP
rs80080401 1522 dbSNP
rs75274477 1523 dbSNP
rs933149275 1529 dbSNP
rs1220038756 1534 dbSNP
rs1287149042 1542 dbSNP
rs1201237429 1545 dbSNP
rs1221659521 1546 dbSNP
rs1266609729 1550 dbSNP
rs1011734173 1552 dbSNP
rs1322165481 1554 dbSNP
rs923141162 1557 dbSNP
rs977293728 1560 dbSNP
rs1220564528 1562 dbSNP
rs1337281072 1563 dbSNP
rs1269363694 1571 dbSNP
rs1196026760 1573 dbSNP
rs1227813475 1576 dbSNP
rs1411888918 1583 dbSNP
rs761389638 1585 dbSNP
rs543257454 1588 dbSNP
rs1450567144 1589 dbSNP
rs565771211 1597 dbSNP
rs999026911 1606 dbSNP
rs1340835761 1607 dbSNP
rs1401468364 1614 dbSNP
rs1282138430 1628 dbSNP
rs990569309 1629 dbSNP
rs907214514 1630 dbSNP
rs1362266640 1633 dbSNP
rs1335153785 1634 dbSNP
rs1034850412 1640 dbSNP
rs1417892273 1642 dbSNP
rs1002998831 1643 dbSNP
rs1167713269 1643 dbSNP
rs1045683247 1645 dbSNP
rs1182550578 1655 dbSNP
rs1415991236 1659 dbSNP
rs35738190 1664 dbSNP
rs1157906247 1666 dbSNP
rs1203802242 1666 dbSNP
rs1304105967 1666 dbSNP
rs1313761831 1666 dbSNP
rs1361087176 1666 dbSNP
rs1421350457 1666 dbSNP
rs1437765150 1666 dbSNP
rs34461633 1666 dbSNP
rs552568828 1666 dbSNP
rs59521058 1666 dbSNP
rs60959053 1666 dbSNP
rs772163126 1666 dbSNP
rs869302184 1666 dbSNP
rs1211016399 1667 dbSNP
rs1245050919 1667 dbSNP
rs1392604510 1667 dbSNP
rs1456553715 1667 dbSNP
rs1491566787 1667 dbSNP
rs1178087293 1668 dbSNP
rs1380896258 1668 dbSNP
rs1182234435 1670 dbSNP
rs1471104168 1670 dbSNP
rs1460516939 1671 dbSNP
rs1335850014 1673 dbSNP
rs181359586 1677 dbSNP
rs1445461670 1678 dbSNP
rs971549925 1679 dbSNP
rs1211872311 1684 dbSNP
rs1378328676 1686 dbSNP
rs948816741 1695 dbSNP
rs1025847665 1697 dbSNP
rs202007318 1700 dbSNP
rs915984853 1701 dbSNP
rs1435730014 1704 dbSNP
rs1344672811 1705 dbSNP
rs574568203 1710 dbSNP
rs532733429 1711 dbSNP
rs1238828507 1714 dbSNP
rs137882655 1718 dbSNP
rs1196591575 1726 dbSNP
rs1246048518 1728 dbSNP
rs550513031 1730 dbSNP
rs531884997 1731 dbSNP
rs553132232 1733 dbSNP
rs188560148 1734 dbSNP
rs1170795260 1737 dbSNP
rs975046391 1740 dbSNP
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rs1328391430 1745 dbSNP
rs1322220157 1747 dbSNP
rs1331020222 1750 dbSNP
rs1285549989 1755 dbSNP
rs1338757145 1757 dbSNP
rs1050588505 1767 dbSNP
rs781661386 1768 dbSNP
rs1022028619 1772 dbSNP
rs1208119383 1773 dbSNP
rs535869463 1773 dbSNP
rs923087432 1775 dbSNP
rs1041549735 1782 dbSNP
rs1477298616 1787 dbSNP
rs1012199743 1795 dbSNP
rs914482189 1796 dbSNP
rs990128510 1799 dbSNP
rs1444547780 1802 dbSNP
rs1415084414 1803 dbSNP
rs957554286 1804 dbSNP
rs1183097046 1808 dbSNP
rs1468118148 1810 dbSNP
rs572540586 1814 dbSNP
rs1231974564 1821 dbSNP
rs560207332 1822 dbSNP
rs1399640042 1827 dbSNP
rs1483938387 1838 dbSNP
rs1328400055 1840 dbSNP
rs1242749557 1841 dbSNP
rs745857764 1844 dbSNP
rs1356990958 1845 dbSNP
rs981512169 1847 dbSNP
rs999079175 1848 dbSNP
rs540854709 1851 dbSNP
rs582587 1854 dbSNP
rs1217050201 1857 dbSNP
rs1263469727 1858 dbSNP
rs1291857941 1863 dbSNP
rs907433702 1879 dbSNP
rs1186267729 1890 dbSNP
rs879090822 1891 dbSNP
rs1225353212 1894 dbSNP
rs1025795461 1895 dbSNP
rs1371214613 1900 dbSNP
rs1012901189 1902 dbSNP
rs1419528807 1905 dbSNP
rs1289783227 1906 dbSNP
rs1410660493 1909 dbSNP
rs894590864 1913 dbSNP
rs962961885 1923 dbSNP
rs1301693354 1927 dbSNP
rs1333607349 1937 dbSNP
rs1038445014 1938 dbSNP
rs1248256560 1944 dbSNP
rs1307070601 1945 dbSNP
rs774221113 1945 dbSNP
rs1351005282 1946 dbSNP
rs1352868988 1946 dbSNP
rs757745882 1950 dbSNP
rs1017600107 1956 dbSNP
rs1262234847 1957 dbSNP
rs1482085324 1959 dbSNP
rs1199472655 1965 dbSNP
rs770859979 1966 dbSNP
rs1167462231 1969 dbSNP
rs184531889 1975 dbSNP
rs558275468 1985 dbSNP
rs1007174435 1987 dbSNP
rs1182540569 2000 dbSNP
rs1473362563 2006 dbSNP
rs1379041055 2008 dbSNP
rs1439575731 2012 dbSNP
rs888765527 2014 dbSNP
rs941409930 2020 dbSNP
rs1160312777 2024 dbSNP
rs1050119629 2032 dbSNP
rs1365849610 2034 dbSNP
rs1198432319 2051 dbSNP
rs908378193 2054 dbSNP
rs1267172410 2055 dbSNP
rs1172280347 2056 dbSNP
rs192168310 2058 dbSNP
rs1315271388 2059 dbSNP
rs1041497036 2061 dbSNP
rs1329362072 2071 dbSNP
rs775566007 2075 dbSNP
rs933909312 2075 dbSNP
rs1232258493 2076 dbSNP
rs1256288882 2088 dbSNP
rs778380499 2092 dbSNP
rs922502154 2092 dbSNP
rs1331489600 2095 dbSNP
rs141225901 2097 dbSNP
rs138698162 2099 dbSNP
rs937304773 2100 dbSNP
rs915010094 2114 dbSNP
rs927268945 2117 dbSNP
rs554591371 2134 dbSNP
rs956634269 2136 dbSNP
rs1279122906 2137 dbSNP
rs535868202 2139 dbSNP
rs145977975 2142 dbSNP
rs57624327 2143 dbSNP
rs1159281665 2147 dbSNP
rs1471056205 2147 dbSNP
rs1458301545 2152 dbSNP
rs972859257 2152 dbSNP
rs1426808009 2161 dbSNP
rs1175204933 2162 dbSNP
rs1433609293 2163 dbSNP
rs1269166721 2165 dbSNP
rs1365395949 2165 dbSNP
rs547502218 2167 dbSNP
rs1485510011 2175 dbSNP
rs538705425 2177 dbSNP
rs1248496084 2179 dbSNP
rs756335257 2180 dbSNP
rs1216340758 2181 dbSNP
rs1307632775 2181 dbSNP
rs1346882831 2181 dbSNP
rs139381412 2181 dbSNP
rs754873959 2181 dbSNP
rs963194443 2181 dbSNP
rs1269998706 2183 dbSNP
rs1024509737 2187 dbSNP
rs1017129052 2191 dbSNP
rs1013366008 2192 dbSNP
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rs28493035 2201 dbSNP
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rs954336746 2206 dbSNP
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rs748241367 2209 dbSNP
rs1397900302 2216 dbSNP
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rs567974930 2996 dbSNP
rs1490887739 3000 dbSNP
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rs555961644 3360 dbSNP
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rs1220701155 3755 dbSNP
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rs550814041 3762 dbSNP
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rs1202581775 3784 dbSNP
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rs529364074 3793 dbSNP
rs1437601973 3805 dbSNP
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rs1414426669 3807 dbSNP
rs1479526386 3810 dbSNP
rs1327352531 3815 dbSNP
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rs1378166401 3823 dbSNP
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rs1403884743 3835 dbSNP
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rs1296252678 3838 dbSNP
rs182873643 3845 dbSNP
rs1309511405 3846 dbSNP
rs1375939279 3846 dbSNP
rs1343225919 3850 dbSNP
rs936683505 3852 dbSNP
rs925406251 3858 dbSNP
rs1350916286 3862 dbSNP
rs1313313444 3875 dbSNP
rs1236151879 3878 dbSNP
rs1019604644 3884 dbSNP
rs1324958804 3885 dbSNP
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rs190977530 3887 dbSNP
rs1410105042 3888 dbSNP
rs1159417858 3905 dbSNP
rs1473474615 3906 dbSNP
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rs1365046651 3993 dbSNP
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rs1045333095 3995 dbSNP
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rs1229237007 4020 dbSNP
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rs1056836478 4028 dbSNP
rs1218937014 4035 dbSNP
rs1165093043 4040 dbSNP
rs765585029 4045 dbSNP
rs1451028337 4050 dbSNP
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rs1300425516 4062 dbSNP
rs1432323869 4065 dbSNP
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rs1185852522 4079 dbSNP
rs1313759466 4080 dbSNP
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rs1455012311 4085 dbSNP
rs951697720 4087 dbSNP
rs1025945904 4094 dbSNP
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rs1008377838 4128 dbSNP
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rs1303749600 4149 dbSNP
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rs778292454 4199 dbSNP
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rs373824124 4215 dbSNP
rs1440433121 4216 dbSNP
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rs1383351474 4221 dbSNP
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rs896758444 4232 dbSNP
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rs1376563335 4238 dbSNP
rs563778387 4245 dbSNP
rs1196657025 4248 dbSNP
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rs1056778671 4254 dbSNP
rs1466405396 4256 dbSNP
rs1173716215 4258 dbSNP
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rs558013644 4272 dbSNP
rs1166702738 4274 dbSNP
rs1004293635 4276 dbSNP
rs1056738654 4281 dbSNP
rs1194030134 4296 dbSNP
rs1437239099 4300 dbSNP
rs937851165 4303 dbSNP
rs150344084 4320 dbSNP
rs1181467176 4331 dbSNP
rs539710207 4337 dbSNP
rs1219867448 4342 dbSNP
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rs1282896283 4360 dbSNP
rs1203384726 4364 dbSNP
rs1342085033 4369 dbSNP
rs951918917 4369 dbSNP
rs1275928548 4370 dbSNP
rs1229007265 4381 dbSNP
rs1319384388 4388 dbSNP
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rs971710232 4389 dbSNP
rs1391231969 4397 dbSNP
rs1451718199 4399 dbSNP
rs1161718076 4403 dbSNP
rs1039532869 4411 dbSNP
rs1311647046 4413 dbSNP
rs943920862 4417 dbSNP
rs1343369629 4420 dbSNP
rs965808231 4422 dbSNP
rs550907707 4423 dbSNP
rs767000959 4425 dbSNP
rs1439648849 4426 dbSNP
rs1243473110 4428 dbSNP
rs1356905694 4437 dbSNP
rs565498060 4441 dbSNP
rs1356563804 4442 dbSNP
rs202214588 4443 dbSNP
rs1408949653 4444 dbSNP
rs1371112715 4447 dbSNP
rs1464041770 4456 dbSNP
rs1028872709 4457 dbSNP
rs1001093412 4461 dbSNP
rs1249159360 4465 dbSNP
rs535588733 4465 dbSNP
rs1185803275 4469 dbSNP
rs979912506 4469 dbSNP
rs1463625975 4470 dbSNP
rs969473793 4475 dbSNP
rs2630 4476 dbSNP
rs1456769738 4477 dbSNP
rs549244151 4487 dbSNP
rs1390685630 4488 dbSNP
rs1450224351 4490 dbSNP
rs1042401159 4491 dbSNP
rs1340712729 4493 dbSNP
rs1246612003 4494 dbSNP
rs1277409240 4496 dbSNP
rs1327914922 4499 dbSNP
rs1009519455 4501 dbSNP
rs1228447176 4506 dbSNP
rs1177656823 4510 dbSNP
rs1269344535 4517 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uacagggUGGGG-GUGAGGACa 5'
                 |:|:|  ||||||| 
Target 5' -------AUCUCAAACUCCUGa 3'
 		1 - 15
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000560955.1 | 3UTR | AUCUCAAACUCCUGACCUCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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