miRTarBase - #MIRT451739


—
pre-miRNA Information
pre-miRNA hsa-mir-6799   
Genomic Coordinates chr19: 49791866 - 49791934
Description Homo sapiens miR-6799 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6799-5p
Sequence 6| GGGGAGGUGUGCAGGGCUGG |25
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1439869964 1 dbSNP
rs1206286688 3 dbSNP
rs767550469 6 dbSNP
rs1471732220 9 dbSNP
rs986966775 11 dbSNP
rs754316096 12 dbSNP
rs757819623 15 dbSNP
rs1473089544 16 dbSNP
Putative Targets

Gene Information
Gene Symbol CES3   
Synonyms ES31
Description carboxylesterase 3
Transcript NM_001185176   
Other Transcripts NM_001185177 , NM_024922   
Expression
Putative miRNA Targets on CES3
3'UTR of CES3
(miRNA target sites are highlighted)		 
>CES3|NM_001185176|3'UTR
   1 GGCCAGGCCTGAACCTTCTTGGCTGGGGCAAACCACTCTTCAAGTGGTGGCAGAGTCCCAGCACGGCAGCCCGCCTCTCC
  81 CCCTGCTGAGACTTTAATCTCCACCAGCCCTTAAAGTGTCGGCCGCTCTGTGACTGGAGTTATGCTCTTTTGAAATGTCA
 161 CAAGGCCGCCTCCCACCTCTGGGGCATTGTACAAGTTCTTCCCTCTCCCTGAAGTGCCTTTCCTGCTTTCTTCGTGGTAG
 241 GTTCTAGCACATTCCTCTAGCTTCCTGGAGGACTCACTCCCCCAGGAAGCCTTCCCTGCCTTCTCTGGGCTGTGCGGCCC
 321 CGAGTCTGCGTCCATTAGAGCACAGTCCACCCGAGGCTAGCACCGTGTCTGTGTCTGTCTCCCCCTCAGAGGAGCTCTCT
 401 CAAAATGGGGATTAGCCTAACCCCACTCTGTCACCCACACCAGGATCGGGTGGGACCTGGAGCTAGGGGGTGTTTGCTGA
 481 GTGAGTGAGTGAAACACAGAATATGGGAATGGCAGCTGCTGAACTTGAACCCAGAGCCTTCAGGTGCCAAAGCCATACTC
 561 AGGCCCCCACCGACATTGTCCACCCTGGCCAGAAGGGTGCATGCCAATGGCAGAGACCTGGGATGGGAGAAGTCCTGGGG
 641 CGCCAGGGGATCCAGCCTAGAGCAGACCTTAGCCCCTGACTAAGGCCTCAGACTAGGGCGGGAGGGGTCTCCTCCTCTCT
 721 GCTGCCCAGTCCTGGCCCCTGCACAAGACAACAGAATCCATCAGGGCCATGAGTGTCACCCAGACCTGACCCTCACCAAT
 801 TCCAGCCCTGACCCTCAGGACGCTGGATGCCAGCTCCCAGCCCCAGTGCCGGGTCCTCCCTCCCTTCCTGGCTTGGGGAG
 881 ACCAGTTTCTGGGGAGCTTCCAAGAGCACCCACCAAGACACAGCAGGACAGGCCAGGGGAGGGCATCTGGACCAGGGCAT
 961 CCGTCGGGCTATTGTCACAGAGAAAAGAAGAGACCCACCCACTCGGGCTGCAAAAGGTGAAAAGCACCAAGAGGTTTTCA
1041 GATGGAAGTGAGAGGTGACAGTGTGCTGGCAGCCCTCACAGCCCTCGCTTGCTCTCCCTGCCGCCTCTGCCTGGGCTCCC
1121 ACTTTGGCAGCACTTGAGGAGCCCTTCAACCCGCCGCTGCACTGTAGGAGCCCCTTTCTGGGCTGGCCAAGGCCGGAGCC
1201 AGCTCCCTCAGCTTGCGGGGAGGTGCGGAGGGAGAGGGGCGGGCAGGAACCGGGGCTGCGCGCAGCGCTTGCGGGCCAGA
1281 GTGAGTTCCGGGTGGGCGTGGGCTCGGCGGGGCCCCACTCAGAGCAGCTGGCCGGCCCCAGGCAGTGAGGGCCTTAGCAC
1361 CTGGGCCAGCAGCTGCTGTGCTCGATTTCTCGCTGGGCCTTAGCTGCCTCCCCGCGGGGCAGGGCTCGGGACCTGCAGCC
1441 CTCCATGCCTGACCCTCCCCCCACCCCCCGTGGGCTCCTGTGCGGCCGGAGCCTCCCCAAGGAGCGCCGCCCCCTGCTCC
1521 ACAGCGCCCAGTCCCATCGACCACCCAAGGGCTGAGGAGTGCGGGTGCACAGCGCGGGACTGGCAGGCAGCTCCACCTGC
1601 TGCCCCAGTGCTGGATCCACTGGGTGAAGCCAGCTGGGCTCCTGAGTCTGGTGGGGACTTGGAGAACCTTTATGTCTAGC
1681 TAAGGGATTGTAAATACACCGATGGGCACTCTGTATCTAGCTCAAGGTTTGTAAACACACCAATCAGCACCCTGTGTCTA
1761 GCTCAGTGTTTGTGAATGCACCAATCCACACTCTGTATCTGGCTACTCTGGTGGGGACTTGGAGAACCTTTGTGTCCACA
1841 CTCTGTATCTAGCTAATCTAGTGGGGATGTGGAGAACCTTTGTGTCTAGCTCAGGGATCGTAAACGCACCAATCAGCACC
1921 CTGTCAAAACAGACCACTTGACTCTCTGTAAAATGGACCAATCAGCAGGATGTGGGTGGGGCGAGACAAGAGAATAAAAG
2001 CAGGCTGCCTGAGCCAGCAGTGACAACCCCCCTCGGGTCCCCTCCCACGCCGTGGAAGCTTTGTTCTTTCGCTCTTTGCA
2081 ATAAATCTTGCTACTGCCCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggUCGGGA-CGUGUGGAGGGg 5'
            :|||:| || ::|||||| 
Target 5' tgGGCCTTAGC-TGCCTCCCc 3'
 1394 - 1413 141.00 -22.90
2 
miRNA  3' ggUCG-GGACGUG-------UGGAGGGg 5'
            :|| ||||::|       :|||||| 
Target 5' tgGGCTCCTGTGCGGCCGGAGCCTCCCc 3'
 1471 - 1498 134.00 -24.00
3 
miRNA  3' ggucgggaCGUGUGGAGGGg 5'
                  || |:|||||| 
Target 5' gtcacaagGC-CGCCTCCCa 3'
 157 - 175 131.00 -19.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30105619 57 COSMIC
COSN30191223 59 COSMIC
COSN26847126 66 COSMIC
COSN31561314 66 COSMIC
COSN30461017 73 COSMIC
COSN30512525 77 COSMIC
COSN30109929 102 COSMIC
COSN6092240 383 COSMIC
COSN26627504 558 COSMIC
COSN7268569 684 COSMIC
COSN17078438 738 COSMIC
COSN32151659 1087 COSMIC
COSN32151660 1095 COSMIC
COSN9440526 1238 COSMIC
COSN9651337 1393 COSMIC
COSN17980771 1457 COSMIC
COSN2512425 1514 COSMIC
COSN21978335 1550 COSMIC
COSN27652213 1614 COSMIC
rs71649618 701 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs148222712 3 dbSNP
rs1033781081 4 dbSNP
rs1238965799 6 dbSNP
rs377396217 9 dbSNP
rs762389340 10 dbSNP
rs1467629987 13 dbSNP
rs766359203 15 dbSNP
rs1210153020 20 dbSNP
rs1254937057 23 dbSNP
rs1483192378 27 dbSNP
rs1199295797 30 dbSNP
rs373390760 37 dbSNP
rs992780421 41 dbSNP
rs776683069 42 dbSNP
rs1464893116 47 dbSNP
rs1264262463 55 dbSNP
rs1212491840 56 dbSNP
rs1346441940 64 dbSNP
rs989607266 65 dbSNP
rs1464617495 66 dbSNP
rs761191818 73 dbSNP
rs1299622391 74 dbSNP
rs527713380 78 dbSNP
rs924295794 80 dbSNP
rs1250004215 81 dbSNP
rs1334685303 82 dbSNP
rs547832533 83 dbSNP
rs1054217115 84 dbSNP
rs1449215611 86 dbSNP
rs1043048084 87 dbSNP
rs902807133 89 dbSNP
rs1177612930 110 dbSNP
rs938352144 111 dbSNP
rs189762509 118 dbSNP
rs750425660 122 dbSNP
rs1276307750 124 dbSNP
rs141892963 125 dbSNP
rs373223553 126 dbSNP
rs759604750 130 dbSNP
rs899007019 144 dbSNP
rs1246832934 146 dbSNP
rs150652045 147 dbSNP
rs538812654 164 dbSNP
rs139761285 168 dbSNP
rs959498073 169 dbSNP
rs1372689867 177 dbSNP
rs1287505195 179 dbSNP
rs1306352753 188 dbSNP
rs149358201 196 dbSNP
rs1429543686 197 dbSNP
rs954700029 203 dbSNP
rs987426319 215 dbSNP
rs1017599189 219 dbSNP
rs1165522573 234 dbSNP
rs534381729 235 dbSNP
rs554155642 240 dbSNP
rs1186664389 242 dbSNP
rs966967304 243 dbSNP
rs1253564613 245 dbSNP
rs752968701 254 dbSNP
rs758160510 257 dbSNP
rs1317657483 258 dbSNP
rs1290406208 269 dbSNP
rs1229820079 279 dbSNP
rs924242084 282 dbSNP
rs1179195006 284 dbSNP
rs757068577 285 dbSNP
rs1352367531 291 dbSNP
rs1409376419 296 dbSNP
rs1350672240 299 dbSNP
rs569030103 300 dbSNP
rs978332083 312 dbSNP
rs928196437 316 dbSNP
rs538055558 317 dbSNP
rs910298475 323 dbSNP
rs1413459313 327 dbSNP
rs943154029 330 dbSNP
rs777504939 331 dbSNP
rs1160985887 335 dbSNP
rs374404887 340 dbSNP
rs923127445 341 dbSNP
rs746103727 344 dbSNP
rs1056798302 345 dbSNP
rs1408051148 351 dbSNP
rs894174240 353 dbSNP
rs574051083 354 dbSNP
rs1266376806 356 dbSNP
rs1223288343 364 dbSNP
rs1404311135 365 dbSNP
rs948421699 366 dbSNP
rs1037473196 368 dbSNP
rs1276781915 372 dbSNP
rs1434802929 377 dbSNP
rs1330818188 380 dbSNP
rs887740932 382 dbSNP
rs1006186139 383 dbSNP
rs1162095696 385 dbSNP
rs1055082254 386 dbSNP
rs1351487736 393 dbSNP
rs1437131943 397 dbSNP
rs1192526694 400 dbSNP
rs758578847 405 dbSNP
rs751333584 409 dbSNP
rs1307133796 415 dbSNP
rs1466251860 416 dbSNP
rs376845684 417 dbSNP
rs556107326 426 dbSNP
rs71649616 426 dbSNP
rs1408218992 442 dbSNP
rs898959899 444 dbSNP
rs993745285 445 dbSNP
rs1026181905 446 dbSNP
rs1014109810 448 dbSNP
rs890367255 449 dbSNP
rs1008795158 455 dbSNP
rs1287846315 460 dbSNP
rs1437690440 461 dbSNP
rs1025126665 468 dbSNP
rs967291674 473 dbSNP
rs1359167790 482 dbSNP
rs757151662 498 dbSNP
rs781056575 510 dbSNP
rs1169028727 515 dbSNP
rs1451073150 518 dbSNP
rs958312170 520 dbSNP
rs964697955 521 dbSNP
rs910244786 527 dbSNP
rs1208102485 531 dbSNP
rs1485488663 532 dbSNP
rs1274335439 535 dbSNP
rs964482017 538 dbSNP
rs1010924417 565 dbSNP
rs1022806992 567 dbSNP
rs1231098255 568 dbSNP
rs1183888494 571 dbSNP
rs865918532 573 dbSNP
rs1472269005 577 dbSNP
rs978661109 578 dbSNP
rs1381957206 584 dbSNP
rs976250845 587 dbSNP
rs1412350860 592 dbSNP
rs1415370014 593 dbSNP
rs1308218509 602 dbSNP
rs1431404436 603 dbSNP
rs1371069789 608 dbSNP
rs1169468533 612 dbSNP
rs1424393402 621 dbSNP
rs1425186038 627 dbSNP
rs928176436 633 dbSNP
rs960934376 636 dbSNP
rs1180238725 638 dbSNP
rs181363967 639 dbSNP
rs563183992 642 dbSNP
rs71649617 643 dbSNP
rs909125478 646 dbSNP
rs545559114 652 dbSNP
rs1222768510 660 dbSNP
rs941991538 667 dbSNP
rs867704505 669 dbSNP
rs1182534905 675 dbSNP
rs1055030619 676 dbSNP
rs1354196424 679 dbSNP
rs1329312295 684 dbSNP
rs1336532872 686 dbSNP
rs948369773 688 dbSNP
rs1288602369 694 dbSNP
rs949467605 695 dbSNP
rs1393869017 696 dbSNP
rs1046933023 698 dbSNP
rs902639065 699 dbSNP
rs557969769 700 dbSNP
rs71649618 701 dbSNP
rs186785326 702 dbSNP
rs1474926215 709 dbSNP
rs1412729712 710 dbSNP
rs1282473679 712 dbSNP
rs920331418 715 dbSNP
rs1381497936 723 dbSNP
rs1032553989 728 dbSNP
rs527801212 731 dbSNP
rs1192188885 732 dbSNP
rs578165748 759 dbSNP
rs780217899 771 dbSNP
rs1264209729 777 dbSNP
rs1297595403 785 dbSNP
rs745368333 789 dbSNP
rs1330410397 790 dbSNP
rs894046488 792 dbSNP
rs1229663042 800 dbSNP
rs747105899 803 dbSNP
rs1007178654 804 dbSNP
rs1207667413 806 dbSNP
rs1387162350 809 dbSNP
rs547870714 822 dbSNP
rs890325561 823 dbSNP
rs1207633829 835 dbSNP
rs1238689613 841 dbSNP
rs1444788267 842 dbSNP
rs1008741417 851 dbSNP
rs1451695930 851 dbSNP
rs1030503420 852 dbSNP
rs112368636 854 dbSNP
rs1451282481 862 dbSNP
rs1251585586 865 dbSNP
rs1193395340 874 dbSNP
rs765406760 882 dbSNP
rs900474091 892 dbSNP
rs1010852352 897 dbSNP
rs1022332655 901 dbSNP
rs891005127 902 dbSNP
rs909072235 902 dbSNP
rs941939139 906 dbSNP
rs1259784552 908 dbSNP
rs1233453831 909 dbSNP
rs1332506309 934 dbSNP
rs562557014 942 dbSNP
rs990708823 945 dbSNP
rs1453377005 946 dbSNP
rs1322407645 949 dbSNP
rs999643447 949 dbSNP
rs916560464 950 dbSNP
rs1035568703 952 dbSNP
rs1384272610 957 dbSNP
rs17617940 963 dbSNP
rs549842035 964 dbSNP
rs1230300747 967 dbSNP
rs902595201 970 dbSNP
rs916842326 972 dbSNP
rs962989842 983 dbSNP
rs973476646 984 dbSNP
rs1392597522 994 dbSNP
rs748617604 994 dbSNP
rs1191575553 995 dbSNP
rs1444797393 1001 dbSNP
rs78189051 1005 dbSNP
rs929036598 1006 dbSNP
rs893994093 1010 dbSNP
rs1233323026 1016 dbSNP
rs1342560732 1017 dbSNP
rs1047488869 1020 dbSNP
rs1225225646 1025 dbSNP
rs1217113793 1026 dbSNP
rs1280222106 1031 dbSNP
rs1018946281 1032 dbSNP
rs1334975777 1042 dbSNP
rs538530060 1050 dbSNP
rs1402253101 1063 dbSNP
rs1461501863 1066 dbSNP
rs1373890514 1069 dbSNP
rs1312455177 1082 dbSNP
rs1372730325 1087 dbSNP
rs1430804619 1087 dbSNP
rs1207499625 1088 dbSNP
rs900131871 1097 dbSNP
rs879612132 1103 dbSNP
rs944548012 1104 dbSNP
rs1038875809 1111 dbSNP
rs1475875243 1115 dbSNP
rs71649619 1116 dbSNP
rs1209625957 1117 dbSNP
rs1010845348 1119 dbSNP
rs1044103320 1123 dbSNP
rs1274936131 1136 dbSNP
rs1193825185 1142 dbSNP
rs1338720451 1143 dbSNP
rs939957009 1150 dbSNP
rs902524389 1153 dbSNP
rs1247121005 1154 dbSNP
rs191688419 1156 dbSNP
rs1174108431 1163 dbSNP
rs1016020644 1164 dbSNP
rs1431641170 1165 dbSNP
rs1327318850 1172 dbSNP
rs963199159 1175 dbSNP
rs990710902 1182 dbSNP
rs916490954 1184 dbSNP
rs71649620 1195 dbSNP
rs896622384 1196 dbSNP
rs1472737309 1202 dbSNP
rs1234233422 1207 dbSNP
rs1012413596 1208 dbSNP
rs1179422408 1209 dbSNP
rs1436970974 1213 dbSNP
rs1023849544 1217 dbSNP
rs962937845 1218 dbSNP
rs1384396399 1221 dbSNP
rs974380784 1224 dbSNP
rs71649621 1227 dbSNP
rs71649622 1228 dbSNP
rs950433136 1233 dbSNP
rs1441977660 1236 dbSNP
rs1053892066 1237 dbSNP
rs71649623 1241 dbSNP
rs760954926 1242 dbSNP
rs1434692952 1243 dbSNP
rs759297183 1245 dbSNP
rs1323758016 1246 dbSNP
rs1469446428 1248 dbSNP
rs1039907463 1249 dbSNP
rs1195266491 1251 dbSNP
rs1227447880 1252 dbSNP
rs944497000 1253 dbSNP
rs974527346 1255 dbSNP
rs1223374474 1257 dbSNP
rs113848618 1260 dbSNP
rs771468662 1261 dbSNP
rs537033256 1262 dbSNP
rs886118277 1263 dbSNP
rs902472705 1267 dbSNP
rs71649624 1268 dbSNP
rs576695016 1269 dbSNP
rs545342002 1273 dbSNP
rs963145800 1274 dbSNP
rs1269371089 1276 dbSNP
rs559204587 1277 dbSNP
rs1394439899 1286 dbSNP
rs1056512600 1290 dbSNP
rs542607658 1291 dbSNP
rs971040205 1294 dbSNP
rs982065591 1297 dbSNP
rs1282677979 1298 dbSNP
rs541579718 1299 dbSNP
rs1012361506 1304 dbSNP
rs1023797327 1309 dbSNP
rs561352488 1310 dbSNP
rs563216417 1320 dbSNP
rs915321430 1324 dbSNP
rs942839423 1327 dbSNP
rs796077034 1333 dbSNP
rs530069397 1334 dbSNP
rs934206538 1335 dbSNP
rs1432635974 1340 dbSNP
rs1374565130 1341 dbSNP
rs1404128969 1344 dbSNP
rs1430307472 1346 dbSNP
rs374017551 1352 dbSNP
rs1417269434 1353 dbSNP
rs1186024748 1354 dbSNP
rs996139292 1357 dbSNP
rs1305311336 1359 dbSNP
rs181979341 1361 dbSNP
rs950402855 1363 dbSNP
rs886065487 1364 dbSNP
rs1485457467 1367 dbSNP
rs1275879284 1373 dbSNP
rs1004510583 1378 dbSNP
rs1306322122 1380 dbSNP
rs983133002 1384 dbSNP
rs1037361609 1386 dbSNP
rs1294762233 1387 dbSNP
rs898903063 1392 dbSNP
rs1018586764 1393 dbSNP
rs532448085 1395 dbSNP
rs974476403 1404 dbSNP
rs921744466 1407 dbSNP
rs970606668 1412 dbSNP
rs1406037128 1414 dbSNP
rs1216458644 1415 dbSNP
rs552008878 1416 dbSNP
rs1475024867 1417 dbSNP
rs1030931368 1419 dbSNP
rs946572242 1421 dbSNP
rs1222879455 1428 dbSNP
rs979723329 1429 dbSNP
rs923873006 1432 dbSNP
rs186519062 1434 dbSNP
rs1307211935 1440 dbSNP
rs1392923567 1446 dbSNP
rs1179755173 1452 dbSNP
rs1203435806 1457 dbSNP
rs1297377698 1462 dbSNP
rs1249821654 1463 dbSNP
rs1261749118 1464 dbSNP
rs1460944449 1465 dbSNP
rs1161475818 1467 dbSNP
rs377295905 1468 dbSNP
rs1192136402 1470 dbSNP
rs1444688226 1470 dbSNP
rs1182571119 1471 dbSNP
rs1368013588 1472 dbSNP
rs1456824317 1473 dbSNP
rs1166083181 1477 dbSNP
rs1366581339 1484 dbSNP
rs190971332 1485 dbSNP
rs975535548 1488 dbSNP
rs896517937 1489 dbSNP
rs1306070298 1491 dbSNP
rs1398119537 1493 dbSNP
rs1373132741 1496 dbSNP
rs1323766236 1500 dbSNP
rs71649625 1506 dbSNP
rs934176171 1507 dbSNP
rs1338241303 1509 dbSNP
rs1451982956 1510 dbSNP
rs536717472 1511 dbSNP
rs1248062086 1526 dbSNP
rs982960092 1527 dbSNP
rs1341386553 1528 dbSNP
rs1045194043 1529 dbSNP
rs1393810993 1536 dbSNP
rs1193495975 1538 dbSNP
rs898622486 1540 dbSNP
rs1252886443 1541 dbSNP
rs995699840 1543 dbSNP
rs1261898236 1545 dbSNP
rs1481723665 1548 dbSNP
rs908789284 1551 dbSNP
rs370219681 1553 dbSNP
rs1255549660 1556 dbSNP
rs1259729680 1558 dbSNP
rs1211375092 1560 dbSNP
rs887347115 1563 dbSNP
rs1349702566 1574 dbSNP
rs1301181743 1575 dbSNP
rs1233555597 1576 dbSNP
rs1422207781 1577 dbSNP
rs1297869291 1582 dbSNP
rs1380584585 1592 dbSNP
rs1384556095 1602 dbSNP
rs1008460075 1603 dbSNP
rs1185509522 1605 dbSNP
rs1313640837 1612 dbSNP
rs1436983337 1615 dbSNP
rs373637931 1619 dbSNP
rs1374086954 1621 dbSNP
rs1037318815 1623 dbSNP
rs1449415614 1625 dbSNP
rs1194718908 1632 dbSNP
rs532908927 1634 dbSNP
rs1426182840 1638 dbSNP
rs1018534485 1640 dbSNP
rs965700944 1642 dbSNP
rs1375180048 1648 dbSNP
rs1486442856 1652 dbSNP
rs995841907 1655 dbSNP
rs1485002556 1657 dbSNP
rs947772668 1662 dbSNP
rs1028706377 1669 dbSNP
rs1340048115 1674 dbSNP
rs1252954209 1680 dbSNP
rs367663371 1681 dbSNP
rs370725860 1688 dbSNP
rs1044825527 1691 dbSNP
rs1293968520 1694 dbSNP
rs539344370 1698 dbSNP
rs559290443 1701 dbSNP
rs906326254 1702 dbSNP
rs572712114 1704 dbSNP
rs1030880281 1709 dbSNP
rs923794475 1711 dbSNP
rs892370545 1737 dbSNP
rs956637043 1739 dbSNP
rs1422369541 1742 dbSNP
rs992091141 1744 dbSNP
rs917902261 1751 dbSNP
rs1454064403 1753 dbSNP
rs1186607642 1759 dbSNP
rs1438147973 1765 dbSNP
rs1252592061 1768 dbSNP
rs568937001 1784 dbSNP
rs1194062214 1785 dbSNP
rs1336847288 1787 dbSNP
rs1317217633 1788 dbSNP
rs1235185224 1794 dbSNP
rs1273934339 1794 dbSNP
rs1022276142 1802 dbSNP
rs1364321802 1809 dbSNP
rs948039584 1812 dbSNP
rs1045141485 1819 dbSNP
rs1196051211 1828 dbSNP
rs1327256609 1829 dbSNP
rs1029751816 1837 dbSNP
rs920016702 1838 dbSNP
rs1307922700 1839 dbSNP
rs931409311 1841 dbSNP
rs12448417 1845 dbSNP
rs1415257926 1850 dbSNP
rs908745462 1862 dbSNP
rs941588822 1863 dbSNP
rs1365390174 1866 dbSNP
rs887284790 1867 dbSNP
rs1179356865 1871 dbSNP
rs1457296790 1873 dbSNP
rs1255566109 1879 dbSNP
rs1008409541 1883 dbSNP
rs1253491703 1887 dbSNP
rs974317697 1890 dbSNP
rs555173500 1900 dbSNP
rs1289450443 1901 dbSNP
rs1224603873 1903 dbSNP
rs1041283327 1906 dbSNP
rs559945953 1909 dbSNP
rs901488582 1913 dbSNP
rs995786131 1915 dbSNP
rs1029099643 1919 dbSNP
rs1442472403 1924 dbSNP
rs1243852010 1927 dbSNP
rs528905981 1934 dbSNP
rs71649627 1935 dbSNP
rs1400972790 1937 dbSNP
rs574893310 1938 dbSNP
rs1409676174 1941 dbSNP
rs967821239 1942 dbSNP
rs1045163952 1944 dbSNP
rs1185334760 1948 dbSNP
rs906280013 1960 dbSNP
rs1001056218 1962 dbSNP
rs1422077646 1963 dbSNP
rs1452489903 1964 dbSNP
rs1246273283 1973 dbSNP
rs1030799694 1974 dbSNP
rs956747348 1976 dbSNP
rs548668394 1985 dbSNP
rs1282364608 1988 dbSNP
rs1216385902 1993 dbSNP
rs1348967939 1995 dbSNP
rs1306064007 1996 dbSNP
rs1232826007 2003 dbSNP
rs1175803260 2006 dbSNP
rs1367477983 2007 dbSNP
rs1273782797 2008 dbSNP
rs1430755759 2011 dbSNP
rs774021627 2013 dbSNP
rs879309635 2014 dbSNP
rs1315700749 2016 dbSNP
rs992051872 2017 dbSNP
rs1375901789 2018 dbSNP
rs1432833422 2019 dbSNP
rs548479070 2020 dbSNP
rs1187209000 2022 dbSNP
rs563706053 2025 dbSNP
rs1176484664 2027 dbSNP
rs1193147757 2027 dbSNP
rs1387338622 2028 dbSNP
rs1282960631 2029 dbSNP
rs980746979 2030 dbSNP
rs532400828 2031 dbSNP
rs919958039 2032 dbSNP
rs1290632268 2033 dbSNP
rs1362583237 2035 dbSNP
rs545729682 2035 dbSNP
rs1399086827 2040 dbSNP
rs182451529 2042 dbSNP
rs1314545678 2043 dbSNP
rs1047594588 2047 dbSNP
rs1170984072 2048 dbSNP
rs908686935 2049 dbSNP
rs944225022 2050 dbSNP
rs1041226552 2051 dbSNP
rs56387824 2052 dbSNP
rs932944836 2053 dbSNP
rs955465606 2060 dbSNP
rs1050086672 2071 dbSNP
rs903524098 2074 dbSNP
rs1000580779 2084 dbSNP
rs1306268380 2086 dbSNP
rs1015692936 2095 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000543856.1 | 3UTR | ACCUCUGGGGCAUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
495 hsa-miR-6799-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057844 SLC30A7 solute carrier family 30 member 7 2 2
MIRT180622 CRY2 cryptochrome circadian clock 2 2 2
MIRT254627 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT294657 ZNF548 zinc finger protein 548 2 2
MIRT386443 CCL22 C-C motif chemokine ligand 22 2 2
MIRT441466 BEST3 bestrophin 3 2 2
MIRT446753 ZNF491 zinc finger protein 491 2 2
MIRT449226 RAD51B RAD51 paralog B 2 2
MIRT451096 ZNF584 zinc finger protein 584 2 2
MIRT451563 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451685 C1RL complement C1r subcomponent like 2 2
MIRT451739 CES3 carboxylesterase 3 2 2
MIRT451761 ZNF611 zinc finger protein 611 2 6
MIRT452415 QDPR quinoid dihydropteridine reductase 2 2
MIRT452566 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452860 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452925 DISC1 disrupted in schizophrenia 1 2 2
MIRT453051 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453102 HOXC4 homeobox C4 2 2
MIRT453256 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453299 ZNF394 zinc finger protein 394 2 2
MIRT453474 PITPNM3 PITPNM family member 3 2 2
MIRT453542 PRR12 proline rich 12 2 2
MIRT453597 ZNF557 zinc finger protein 557 2 2
MIRT453798 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453939 XRCC6 X-ray repair cross complementing 6 2 6
MIRT453990 CECR1 adenosine deaminase 2 2 2
MIRT454087 TMEM209 transmembrane protein 209 2 2
MIRT454658 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454756 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT454846 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT455122 TBC1D25 TBC1 domain family member 25 2 2
MIRT455164 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455312 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456472 SERAC1 serine active site containing 1 2 2
MIRT456555 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456640 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456721 TMEM239 transmembrane protein 239 2 4
MIRT457155 MXRA7 matrix remodeling associated 7 2 2
MIRT457489 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457689 ZNF587 zinc finger protein 587 2 2
MIRT457787 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT458001 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458133 TLCD2 TLC domain containing 2 2 2
MIRT458494 MARVELD2 MARVEL domain containing 2 2 2
MIRT458929 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459029 ZNF490 zinc finger protein 490 2 4
MIRT459121 FADS6 fatty acid desaturase 6 2 2
MIRT459319 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459363 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459418 FAM83B family with sequence similarity 83 member B 2 2
MIRT459980 RFT1 RFT1 homolog 2 2
MIRT460139 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460208 FGFR4 fibroblast growth factor receptor 4 2 2
MIRT460443 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460484 FAM105A family with sequence similarity 105 member A 2 6
MIRT460589 FEM1A fem-1 homolog A 2 2
MIRT460647 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460924 NOA1 nitric oxide associated 1 2 4
MIRT461077 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461161 SLC11A2 solute carrier family 11 member 2 2 6
MIRT461456 SLC19A3 solute carrier family 19 member 3 2 6
MIRT461570 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT461594 DPH2 DPH2 homolog 2 2
MIRT461858 ZNF317 zinc finger protein 317 2 2
MIRT461950 C3 complement C3 2 4
MIRT462182 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462449 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT462769 ZNF8 zinc finger protein 8 2 2
MIRT463134 ZNF451 zinc finger protein 451 2 8
MIRT463856 WNT7B Wnt family member 7B 2 2
MIRT463984 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT464254 VCL vinculin 2 2
MIRT464315 UST uronyl 2-sulfotransferase 2 2
MIRT464416 UNC13A unc-13 homolog A 2 6
MIRT464820 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465465 TOR2A torsin family 2 member A 2 2
MIRT466079 TMEM184C transmembrane protein 184C 2 2
MIRT466522 TBXA2R thromboxane A2 receptor 2 2
MIRT467005 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467076 SRRD SRR1 domain containing 2 2
MIRT468573 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT469559 RARA retinoic acid receptor alpha 2 2
MIRT469745 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470769 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470881 PLXND1 plexin D1 2 2
MIRT470981 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471221 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471251 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471301 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471470 PDE7B phosphodiesterase 7B 2 2
MIRT471769 NUP43 nucleoporin 43 2 4
MIRT471824 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472816 MTMR10 myotubularin related protein 10 2 6
MIRT473071 MORN4 MORN repeat containing 4 2 2
MIRT473493 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT473509 MAZ MYC associated zinc finger protein 2 2
MIRT473570 MAT2A methionine adenosyltransferase 2A 2 6
MIRT473995 LRRC20 leucine rich repeat containing 20 2 2
MIRT474532 KLHDC8A kelch domain containing 8A 2 2
MIRT474996 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475368 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT475750 HDLBP high density lipoprotein binding protein 2 2
MIRT476796 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477072 FAM208A family with sequence similarity 208 member A 2 6
MIRT477302 EPHB2 EPH receptor B2 2 2
MIRT477947 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478288 DDX19A DEAD-box helicase 19A 2 4
MIRT478314 DDN dendrin 2 2
MIRT478475 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478626 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478839 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479011 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479169 CLSPN claspin 2 2
MIRT479519 CDCA4 cell division cycle associated 4 2 2
MIRT481379 ATG12 autophagy related 12 2 2
MIRT481731 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482387 AEN apoptosis enhancing nuclease 2 2
MIRT482455 ADAR adenosine deaminase, RNA specific 2 4
MIRT483024 KHSRP KH-type splicing regulatory protein 2 4
MIRT483805 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT484338 EPN1 epsin 1 2 4
MIRT486088 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486307 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486651 ZNF28 zinc finger protein 28 2 2
MIRT486887 TSPYL4 TSPY like 4 2 2
MIRT487127 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487548 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487677 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489255 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489279 RBM8A RNA binding motif protein 8A 2 8
MIRT489399 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489502 CRLF3 cytokine receptor like factor 3 2 4
MIRT489695 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT489775 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489919 RTKN rhotekin 2 2
MIRT490174 TMEM63C transmembrane protein 63C 2 2
MIRT490523 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT491202 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491261 DHX40 DEAH-box helicase 40 2 2
MIRT491390 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491550 YAE1D1 Yae1 domain containing 1 2 2
MIRT492724 PHF12 PHD finger protein 12 2 2
MIRT493873 FAM73B mitoguardin 2 2 4
MIRT493891 FAM43A family with sequence similarity 43 member A 2 4
MIRT494464 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT498589 KRT8 keratin 8 2 2
MIRT498728 SNTN sentan, cilia apical structure protein 2 6
MIRT499984 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT501424 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT503419 SLC25A45 solute carrier family 25 member 45 2 6
MIRT504303 ZNF280B zinc finger protein 280B 2 2
MIRT507978 BCL2L13 BCL2 like 13 2 4
MIRT508891 METTL14 methyltransferase like 14 2 2
MIRT509629 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510109 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510140 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510306 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510625 TMEM167A transmembrane protein 167A 2 4
MIRT511022 NRF1 nuclear respiratory factor 1 2 2
MIRT512225 ATXN3 ataxin 3 2 8
MIRT514345 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515018 SUMF2 sulfatase modifying factor 2 2 2
MIRT515136 ZNF799 zinc finger protein 799 2 4
MIRT515251 DUSP28 dual specificity phosphatase 28 2 2
MIRT516209 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516672 ZNF860 zinc finger protein 860 2 4
MIRT516969 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT518379 ZNF250 zinc finger protein 250 2 2
MIRT518939 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519681 ZNF70 zinc finger protein 70 2 2
MIRT519910 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT519949 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520325 UBXN2A UBX domain protein 2A 2 2
MIRT520614 TMEM41B transmembrane protein 41B 2 2
MIRT520667 TMEM11 transmembrane protein 11 2 2
MIRT520857 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521447 RAD51 RAD51 recombinase 2 2
MIRT521562 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT522335 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522913 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523678 FOPNL FGFR1OP N-terminal like 2 2
MIRT523721 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523873 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524054 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524176 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524857 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT524933 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT525684 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT526834 PHC1 polyhomeotic homolog 1 2 2
MIRT540684 BMP3 bone morphogenetic protein 3 2 2
MIRT541759 KLF8 Kruppel like factor 8 2 2
MIRT550715 PMPCA peptidase, mitochondrial processing alpha subunit 2 6
MIRT561754 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562826 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562906 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564456 SLC35E2 solute carrier family 35 member E2 2 5
MIRT565231 TRAF6 TNF receptor associated factor 6 2 2
MIRT569117 ONECUT3 one cut homeobox 3 2 2
MIRT569229 SUSD1 sushi domain containing 1 2 2
MIRT569521 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570280 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570851 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571319 TPCN2 two pore segment channel 2 2 2
MIRT572081 EXOC8 exocyst complex component 8 2 2
MIRT572123 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573489 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573655 HES6 hes family bHLH transcription factor 6 2 2
MIRT574348 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576505 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608044 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT609312 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT613665 KIAA1210 KIAA1210 2 2
MIRT615639 ATF6 activating transcription factor 6 2 2
MIRT618578 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618866 MBL2 mannose binding lectin 2 2 2
MIRT618966 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619177 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620303 AQP6 aquaporin 6 2 2
MIRT620688 RFTN2 raftlin family member 2 2 2
MIRT621643 UBXN2B UBX domain protein 2B 2 2
MIRT622001 STK4 serine/threonine kinase 4 2 2
MIRT622426 NUDT19 nudix hydrolase 19 2 2
MIRT622577 PRRG4 proline rich and Gla domain 4 2 2
MIRT622808 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624790 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624972 ZNF665 zinc finger protein 665 2 4
MIRT625483 SMAD9 SMAD family member 9 2 2
MIRT626601 ACAA2 acetyl-CoA acyltransferase 2 2 2
MIRT626713 TRIM65 tripartite motif containing 65 2 2
MIRT626979 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627491 STRIP2 striatin interacting protein 2 2 2
MIRT628508 ZNF878 zinc finger protein 878 2 2
MIRT628538 ZNF701 zinc finger protein 701 2 2
MIRT628595 TMEM251 transmembrane protein 251 2 2
MIRT628822 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628901 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628963 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629013 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629064 KIF1C kinesin family member 1C 2 2
MIRT629194 PAPOLA poly(A) polymerase alpha 2 2
MIRT629350 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629452 WIZ widely interspaced zinc finger motifs 2 2
MIRT629700 XKR4 XK related 4 2 2
MIRT629742 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629901 SPATA5 spermatogenesis associated 5 2 2
MIRT629958 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630028 MTL5 testis expressed metallothionein like protein 2 2
MIRT630394 MYH9 myosin heavy chain 9 2 4
MIRT631137 SYNJ2 synaptojanin 2 2 2
MIRT631388 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631475 KLHL21 kelch like family member 21 2 2
MIRT631563 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631620 PCDHB11 protocadherin beta 11 2 2
MIRT631939 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632450 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632660 NAV1 neuron navigator 1 2 2
MIRT632745 MED28 mediator complex subunit 28 2 2
MIRT632835 IGF1 insulin like growth factor 1 2 2
MIRT632914 FRRS1 ferric chelate reductase 1 2 2
MIRT633034 DNAL1 dynein axonemal light chain 1 2 2
MIRT633385 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633445 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633868 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT633913 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT633955 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634047 NUP155 nucleoporin 155 2 2
MIRT634271 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634378 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634440 PDE7A phosphodiesterase 7A 2 2
MIRT634577 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT634701 DSEL dermatan sulfate epimerase-like 2 2
MIRT634773 CD3D CD3d molecule 2 2
MIRT635029 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT636075 ZNF280C zinc finger protein 280C 2 2
MIRT636705 ARSK arylsulfatase family member K 2 2
MIRT637444 ZNF324B zinc finger protein 324B 2 2
MIRT637587 PLD6 phospholipase D family member 6 2 2
MIRT637677 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT638358 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638601 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638828 CRTAP cartilage associated protein 2 2
MIRT638882 CEP97 centrosomal protein 97 2 4
MIRT639659 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640264 FANCA Fanconi anemia complementation group A 2 2
MIRT644998 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645064 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646954 UPK3BL uroplakin 3B like 1 2 2
MIRT648304 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649048 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649890 SLFN12L schlafen family member 12 like 2 2
MIRT650201 DOCK7 dedicator of cytokinesis 7 2 2
MIRT652051 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT654794 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655926 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT657717 GPC4 glypican 4 2 2
MIRT659306 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659848 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT661312 CPM carboxypeptidase M 2 2
MIRT661480 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661911 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT661978 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 4
MIRT662071 ZNF284 zinc finger protein 284 2 2
MIRT662497 ANGPT4 angiopoietin 4 2 2
MIRT662666 LRRC47 leucine rich repeat containing 47 2 2
MIRT663171 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663382 ZNF770 zinc finger protein 770 2 4
MIRT663997 WDR75 WD repeat domain 75 2 2
MIRT664164 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT664494 POLR3K RNA polymerase III subunit K 2 2
MIRT665062 CCDC77 coiled-coil domain containing 77 2 2
MIRT665085 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665722 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665927 TBC1D19 TBC1 domain family member 19 2 4
MIRT666094 SSR1 signal sequence receptor subunit 1 2 2
MIRT666847 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667387 MOB1B MOB kinase activator 1B 2 2
MIRT667580 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667901 ING1 inhibitor of growth family member 1 2 2
MIRT667982 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668202 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668283 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668389 FAT3 FAT atypical cadherin 3 2 2
MIRT669002 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669456 ATL3 atlastin GTPase 3 2 2
MIRT669489 ARL4C ADP ribosylation factor like GTPase 4C 2 2
MIRT669664 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669894 KIAA0754 KIAA0754 2 4
MIRT669980 SSR3 signal sequence receptor subunit 3 2 2
MIRT670157 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670242 TRIM13 tripartite motif containing 13 2 2
MIRT670279 CBY3 chibby family member 3 2 2
MIRT670360 ULBP3 UL16 binding protein 3 2 4
MIRT670632 BVES blood vessel epicardial substance 2 2
MIRT670736 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670775 TRIM66 tripartite motif containing 66 2 2
MIRT670918 DESI1 desumoylating isopeptidase 1 2 2
MIRT671221 CLSTN1 calsyntenin 1 2 2
MIRT671370 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT671403 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671433 TOX4 TOX high mobility group box family member 4 2 2
MIRT671658 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT672040 SMTNL2 smoothelin like 2 2 2
MIRT672142 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672403 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672577 RNF24 ring finger protein 24 2 2
MIRT672798 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673204 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673377 ZNF124 zinc finger protein 124 2 2
MIRT673501 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673858 CAPN7 calpain 7 2 2
MIRT673932 ZNF500 zinc finger protein 500 2 2
MIRT673987 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674087 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674129 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674303 THAP5 THAP domain containing 5 2 2
MIRT674375 POLR3D RNA polymerase III subunit D 2 2
MIRT674647 NKRF NFKB repressing factor 2 2
MIRT674668 PLCE1 phospholipase C epsilon 1 2 2
MIRT674784 NPR1 natriuretic peptide receptor 1 2 2
MIRT674898 RASSF9 Ras association domain family member 9 2 2
MIRT675022 SNX1 sorting nexin 1 2 2
MIRT675347 KLHL26 kelch like family member 26 2 2
MIRT675421 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675502 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675742 AHR aryl hydrocarbon receptor 2 2
MIRT675866 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675996 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676218 TMEM91 transmembrane protein 91 2 2
MIRT677304 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677835 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT677873 ABI2 abl interactor 2 2 2
MIRT677971 ITGB3 integrin subunit beta 3 2 2
MIRT678181 CRCP CGRP receptor component 2 2
MIRT678279 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679466 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679518 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679918 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680035 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680251 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680284 AKIP1 A-kinase interacting protein 1 2 2
MIRT680504 PRIM2 DNA primase subunit 2 2 2
MIRT680634 KIAA1456 KIAA1456 2 2
MIRT680824 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680876 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT681003 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681045 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681125 INTS7 integrator complex subunit 7 2 2
MIRT681163 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681225 DUSP19 dual specificity phosphatase 19 2 2
MIRT681308 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681345 BRI3BP BRI3 binding protein 2 2
MIRT681612 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681782 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT682088 ITGA3 integrin subunit alpha 3 2 4
MIRT682141 SMS spermine synthase 2 2
MIRT682167 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682224 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682347 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT682371 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682540 EXOSC2 exosome component 2 2 2
MIRT682625 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683546 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT683647 ZNF695 zinc finger protein 695 2 2
MIRT684446 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684860 ZNF749 zinc finger protein 749 2 2
MIRT684960 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685051 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685099 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685814 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685915 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686669 TMEM120B transmembrane protein 120B 2 2
MIRT686865 SLC25A32 solute carrier family 25 member 32 2 2
MIRT686959 SFT2D2 SFT2 domain containing 2 2 2
MIRT687122 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687743 KIAA1328 KIAA1328 2 2
MIRT688066 GLUL glutamate-ammonia ligase 2 2
MIRT688773 CDH7 cadherin 7 2 2
MIRT689688 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689743 PRR13 proline rich 13 2 2
MIRT689939 MANSC1 MANSC domain containing 1 2 2
MIRT690096 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690194 C5orf45 MRN complex interacting protein 2 2
MIRT690252 CAMLG calcium modulating ligand 2 2
MIRT690423 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT691115 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691235 DFNB59 pejvakin 2 2
MIRT691302 ZNF681 zinc finger protein 681 2 2
MIRT691371 GP5 glycoprotein V platelet 2 2
MIRT691806 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692150 CEP104 centrosomal protein 104 2 2
MIRT692351 AGTRAP angiotensin II receptor associated protein 2 2
MIRT692579 NCMAP non-compact myelin associated protein 2 2
MIRT692653 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692749 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693098 SCNM1 sodium channel modifier 1 2 2
MIRT693300 SYTL3 synaptotagmin like 3 2 2
MIRT693393 ZNF460 zinc finger protein 460 2 2
MIRT693491 MOB3A MOB kinase activator 3A 2 2
MIRT693538 ZNF708 zinc finger protein 708 2 2
MIRT693566 PIGR polymeric immunoglobulin receptor 2 2
MIRT694378 MTA1 metastasis associated 1 2 2
MIRT694493 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694738 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT695076 ZNF17 zinc finger protein 17 2 2
MIRT695402 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695460 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695727 ZNF117 zinc finger protein 117 2 2
MIRT695902 MED16 mediator complex subunit 16 2 2
MIRT696266 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696567 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696649 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696795 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696825 PLLP plasmolipin 2 2
MIRT696969 CCDC80 coiled-coil domain containing 80 2 2
MIRT697089 GPKOW G-patch domain and KOW motifs 2 2
MIRT697167 INMT indolethylamine N-methyltransferase 2 2
MIRT697210 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697336 ZNF641 zinc finger protein 641 2 2
MIRT697586 YME1L1 YME1 like 1 ATPase 2 2
MIRT698623 TES testin LIM domain protein 2 2
MIRT698954 SPAST spastin 2 2
MIRT699088 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699436 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699558 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700330 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700362 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700463 PURB purine rich element binding protein B 2 2
MIRT701684 MYADM myeloid associated differentiation marker 2 2
MIRT701762 MSL2 MSL complex subunit 2 2 2
MIRT703183 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703210 GOLGA3 golgin A3 2 2
MIRT703366 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703430 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703606 FBXO45 F-box protein 45 2 2
MIRT703705 FAM134A reticulophagy regulator family member 2 2 2
MIRT703815 EVI5 ecotropic viral integration site 5 2 2
MIRT703919 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704239 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704650 CLCC1 chloride channel CLIC like 1 2 2
MIRT705165 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705535 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705665 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706148 ZNF674 zinc finger protein 674 2 2
MIRT706477 SNX27 sorting nexin family member 27 2 2
MIRT706646 SMIM19 small integral membrane protein 19 2 2
MIRT708259 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708842 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710442 BTNL3 butyrophilin like 3 2 2
MIRT711331 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT712438 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT714990 TSPAN11 tetraspanin 11 2 2
MIRT717405 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT722229 ZNF503 zinc finger protein 503 2 2
MIRT725389 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6799-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6799-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6799-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6799-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6799-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-6799-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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