miRTarBase - #MIRT452000


—
pre-miRNA Information
pre-miRNA hsa-mir-6127   
Genomic Coordinates chr1: 22633258 - 22633366
Description Homo sapiens miR-6127 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6127
Sequence 21| UGAGGGAGUGGGUGGGAGG |39
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 17 1 - 22633330 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1235631264 1 dbSNP
rs1456508376 2 dbSNP
rs961421537 3 dbSNP
rs1017317298 4 dbSNP
rs1188516918 10 dbSNP
rs564733534 16 dbSNP
rs777916911 18 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FKBP5   
Synonyms AIG6, FKBP51, FKBP54, P54, PPIase, Ptg-10
Description FK506 binding protein 5
Transcript NM_001145777   
Other Transcripts NM_001145776 , NM_001145775 , NM_004117   
Expression
Putative miRNA Targets on FKBP5
3'UTR of FKBP5
(miRNA target sites are highlighted)		 
>FKBP5|NM_001145777|3'UTR
   1 ATTGTGCTGATATTCCCTACTCTGAATTTTGTCAACACTGCTTGGTAAGAATAAGCTGCAATTTTTATAAATCTGTCATT
  81 TTCAATATGAAAAATGGTGAGAAAACAATCATGTGGAAAAAAAAAAAAGTACAGATTCCTCTTTTACACATTCTGCTCTA
 161 GATTGTAACCTTCCATACAGGCAGACCAGGTCTGGCATCCCCACCCACCACAGTATCACTCACTCCTAAAGCATCTTGCT
 241 TGGTACATAGTTGGCACTCAACAAGTGTTTTTGGAATGAAAAAAGAATGAATAGAATAATTGTTAGCAAAGAATGGAATT
 321 CATAAGGGTAAGTTTCACATCATTTTTCTTTCTTCCTTTTTTTTTTTTTGTATGAGAGACAGGGTCTCCCTTTCTTTCCC
 401 AGGCTGGTCTCAAACTTCTAGCCTCAAGCAATCCTCCCACCTCAGCTTCCCAAAGTGCTGAGATTACAGGCGTGAGCCAC
 481 TGCACCGGGCCCATCTTCCTTTAGACTGTCTTGATGAAGTCACTAGAGCATATGATAAAAGGAGAGAGGACATGCACAAA
 561 TTTCAAAACAAACTGACAGGAGAGTATTGATTGCTTCTAATGGCCAAGATGATTCCTGCACACTTGCTTTTATGAGGAAT
 641 CTCCGGATATTCCTGAATGATATTCATCATAAATTGCTTCTCAGAAACCCTTCTTGGAGCAACTAGGAGTGTGATATTTT
 721 CTCACTTAGATCTTAAACCTCTAGATGTAAGAAAAAAAGAAACCGCCCTTCATTCTGTTTTAATCAGTGTTCTACCCATT
 801 GCTTCCCCACCCCAAATATATGCCTTCTCCATGTCAAGCAGAAAGGGCTTAGTGATGAGAATTAGAGGGAGAATGGGAGT
 881 TCTGTCAAGGTTTCTTTCGTTTTCTGCCACTGCAATACAGAAATTAGATGTTTTTCAGCAGTATAAAGCAGTGAGGCATA
 961 AGTGTACTTTAACAAGTCTTTATGGGGCATCTGCTATAAGACATGCTATTATTAAGTTACAACCTTGTCAGGAGGGAGGA
1041 GTGGCAATGTTAATCCAAATGAAACAACTAGAGAATTATGTAAGAATATATAATCAACCCAAAATTAACACAGCCAGAGG
1121 GCACCATGTGTTTTCAGAATTTGAGCTGAGACAATATTGGGTCATGAAATCAGTTTTGTGGAAGTGTATTGCAATATGTT
1201 ATAAGGATCAGTTTTGTTGCATAAAACTTTGCTTGTGTATGAGTAAGTACTGGATTGCATATTTCTTACTGTGGGTGGTA
1281 TTCAAACAAATTTTAAATCATGGGTTTAGATAAGTATAAATATATAAATATGTTATTTATCATTATTTACTATGTATACT
1361 AAACTCTTATGGATCACCAGAAAGCATGGGGGTATGATAGAATAAGCTCAGAATTGGGAAAAATGGGCTTTATTGCTCTT
1441 CAAATGATTTAGTCATTTAAGGTCCAAAGAGGTTATATTTTCAAGTGAAAAATAGGGGAGTTAGATGTTCCCCAAGTTTC
1521 TTTCCAGCCTGAATTTCTGTGAGTTTCTAAACTCTCAAGAACAAGTGTTATTTTTTTGGTTTTGTTTTGTTTTTAATTCT
1601 AATTGAGGTATATTGGATACTTCTAAACTATTCAAGTAAGATTCCAAGTGGGTTATTTGTATATCCAAATACATAATACA
1681 CTAGAGGGAAAAATGTTTCTACAAAATTTCTTAAGATCGTGAGTCCTTAACAGTATTTTCTATATTTCCGAAGTCCATAA
1761 AAATCCTTAACTATATTTTATATATTTCCTCAATACTTCCAAATAGAATATTAACAGTTTGGGAAGATTTGAGGCTTTTG
1841 GCCTTTGACTAGAATTATATCGATTCAGTGTAGTAAAACAGCTCAGCTATTCAGAGGCTCTAATCGGTGCTATGATACAG
1921 AATTTTGGAGAACATTATTGGTAATGAAATAATGTTATGAAGCCATCTGTCATATAGCTGTGTTCTGAATATATACAGAG
2001 AGATGGCCAGAATTAGTGATCAGTAGCAGAAAGCAATGAGTGTCTGTACAGTTACTTAACTTTGTTGCTTATCAGCATCA
2081 CAACTGCAAGAGTGATACTATTATGAACCTACTTAAAATTACCAATCTTTGGATAAAATCTGGATCAGCAGTCACACACA
2161 TGGAAAAAATTATTTTTAACATGGAATTTGATAGGCAAAATTTTTCAAAACATTAGTCCATTGGGGAAAAATTAATGAAA
2241 GGTTCAAAACCACTGACCTGAGACTTTTCTCCCAGAATGTCTCTGAACATTTTGTACCACTAAAAACTTCCCTGGAGGCA
2321 CCTTTATAATTATAGGTAAAAGATCCCAGCAGTAGTCCTAGCGTTAGCTGTAAAACTTCAAAATGGTTAGTAGATAGTTT
2401 CCTGTACATATTCCCTTCCCAACTCAGGGCAGGTTTCAATCTGCCATACTGCCCTCCCGGGCCTTGTCTTTCCAGGGTGT
2481 CTGACTTGGCATGTTATGCATTTGCACAGAGTCCAGATGTGTAGGTGAGAGCAGAGATGGGCTGAACTAAAGATCTGTAT
2561 TTCATGCCATCTGCATATTGGAATTCTGTTTCCATTGATCTGTTGGTTTGGTTTATACCTAAATGGGTAAAGCCTCTCTC
2641 CTGAGTAGGATTGAATTGTACTCAGCTTTTAAGTGGGAATGATTTTGCCATTGAAGATGTAAAGTCCTCATTTCAACCTC
2721 TGAATACTAAAGAGAAGAAAAATAGAGAACTCTATTTGGCTCTGAAAATAATTATTAAGTACAGGTAACAGCATAATATT
2801 AAGCCAGGCATTGTGCAAGCGAGTTAAACAGACACGATTTTTGCCCTCATAGCTGACAGTGTTCTGCAGGACAGGAGCAT
2881 TAACTCACACCTGGTCAGTGTTTTTCTTTTTTCTGACTTGGCAGCAGAGTGGCAAGAAGGCTAAGAACACTGAAGTGATG
2961 TGGGATTCTTGCGCCCCCTTGTGCTTCTCCTGGGAAGAAAGCATTTCTAAAACAAACTAGTTGAGGAGAATTGTTCAACC
3041 TCTAAACTCTTCAGATAAATCGGGCTTTGCTATATTTTCACCACCCTTGCTGTTCCAAGATACCAGTAATGTGATTTAGA
3121 AACAAGCCGTTTATGACTCTAGGATTTGATGTTTTAAAAAAAATTCCTAAGAAGAGTCCACCCTGTCTTTCATCTCTTTC
3201 CTTTAGTGCAGAATTTTTCAACCTCAGTACTATCAACATTTGGAGTGGGATAATTCTTGATTGTGTGGGGCTGTCTTGTG
3281 CATTGTAGAATATTTAGCAGCATTCCTGGCCTCTGCCCATTAGATGCCAGTAGCATCCTACCCAGTTATGACAACTAAAA
3361 ATGCCTCCAGACCTGCCAGGTGTTCCCTGGGGGGCAAAATCACCCCCCAGTTGAGAACTGCTTTAGTACCTCAGAAGCAG
3441 GGAGTACAAGACAGACTTTTCGCTAATTGGAAGTTGAAGTCTAAATAAAGTTACATGATATATATGCAAGAGCTTTCAAA
3521 AAATTAAAATGCCCTATGTGAAGGAACTATTAAGAAGTCTAATACCTGTTTTTTGTGTTTTGTTTTGTTTTACCATGGCC
3601 TTCTACCATTCTGATTATTCAGAACTTATTGAAATGTTAAGATCTAGGTTTTTGTCCTCCCTGGCTCTTCTTTTCTTTCC
3681 CTATACAATATATTAGGAGATAATCAGAAAAGTTAAGTTAATCAATGCATTAGAGAGGGAGGAGGAGAGAGGATGAAGAA
3761 ATGAGGCATGACAGGGGAAATGCCTGTCCTTCCTATCTCATCTCAGTGAAACAACACTTTTCATTTCCACCCACACATTT
3841 TTTGCTCCCAATGATAGCAAAAGGTTTTGTTGTTGGTATTGTTTTTAGAGAGAGAGGGTCTTACTCTGTCACCCAGGCTG
3921 GAGTGCAGTGGCACAAGCATAGCTAACTGCAGCTTCGAACTCCTGGACTTAAGAGATCCTCCTGCCTCAGCTTCCCAAAG
4001 TGCTGGGACTATAGGCGTGAGCCACCACACCACTTTAGAAAAAGTCTTGATTCCATATTTACATTCCTTTGATTTCAATA
4081 TTTACTCAACAAACCTTTATTAAAGACCTCTTGGTGCTAAACCCTGAATATTCCAAAAGGGAGAGGACAATGCTGCCTGT
4161 CCTCAAAGACCAGCAAGAGAAAAGGCAGTGACAGAAAGAAAATGCCGACCTGAAACTGGTGAGGACTTTATTCTTTTTTT
4241 TTTGTAGCATCCAAAAAAGGAGTGGTAGGCCTAAGACTATGACAAAATTTAAGTATTGTCTTAGCTTGGGCTGCCACAGT
4321 AAAATACCATACACTGGGTGGCTTCAACAACAGGAATTTACTTCTGGAGACTGTAAGTCCCAGATCAAGGTGTTAGCAGG
4401 ATCAGTGTCTGGGGAGGGCCTCTCCTCTGGTTCCTTGTAGCTCCCTTCTTGCTGTGTTCTCACATGGCCTTTCCACATGC
4481 ATGTGAGTGGAGAGAGGGCAGAGGGCAGCAAGCACCCGAGTTTCTTCTTATAAAGGCTCTAATCCCATCATGAGGCCCCA
4561 CCCTCATGACCACATCTAACCTAATTCCCTCCCCAAATGCTCCATCTGCAAATATCACATTCGGGGTGAGGGCTTCAACA
4641 TAGGAATTTAGGATGGGGGACACAATTCAGTCCATAGCAAATCTAATTTCCTCAAGAATTTCAGCATTTAAAATAAAATG
4721 CCCTGGTTTCGTGTTCTTATGAATGACCTGTATCACACACTTCTGAGGCAGAGAGGGTGACAGACTTTGATTTTAGTGCC
4801 AGTCTTCCCTCTCCTAAGTGAGTGACTTGGGAAGAAGGATGTTCGAGGGATGTAGCCTGGCCCTCATTCACACCCAGGCC
4881 CTCCAGCTGGAACAGGTCTGCCCCATCTTCATCACCAGAAAATCCACACCAGGGCTTCCTTTCTACAGGCAGAGCTCGTT
4961 TCTTACATCACCCACTTGAAGTCCTGTATCACAGGCATGTCCTCTTAGACCTGCTCTATGGTTTTTCTCTTACTCAGACT
5041 CCTTGGGTGAGGGTTGGAGTATTTGTGGGGAGAGACAACTCGGCAGTGAGATGTACGCGCTGCTTGGGCTGTGGTAAATC
5121 CTAGTAACATGGTCTTAACACTGTTGGTCAGGCATTGAATTTAATGTCCTAATAGGTCTGGCTGCTCCTCTGCCATCTGG
5201 CAGGATGTATCATCTGTGGTTTTGAGCTTATCACCTCCTCAAAGGAGAATCCCCACTTGTACTCCTGTTTCTATTTGCGT
5281 ATTTACCAGCGATTCCCCAGTGCTTTCATTTACCTTAAAATCACAGTGGACACATTGTCTCAGCCCTGGAGGGGTTTTGT
5361 TTTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGGC
5441 TCACTGCAACCTCTGCCTCTTAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCTAAGTAGCCGGGATTACAGGCATATGCC
5521 ACCATGCCTGGCTCATTTTTGTATTTTTAGTAGAGACGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTG
5601 TCTCGGCCTCCAAAGTGCTGGGATTACAGGTATGAGCCACTGTGCTCAGCCCCCAGCGTTTCTCATATGAGCATGTATAT
5681 ATATATATATTATATATATATTATATATGTTTATATTTATATATATTATATATAACTGACAGACCTTTCTGATGTATATT
5761 GTTTTATAGTTGTTATTTATGTTGTATGCTACTATCCAACTATTCATATTCCCATTGCCTATAGATCAGGGGTCAGCAAA
5841 CTACAGTTTGCTGGCCAAATCTGGTCCCTGCCTGTTTTTGTAAGTACAGTTTAACTGAAACACAGCTGCACCCATTGATT
5921 TACATACTGTCTAGAGCAGCTTTTGCACTACAAATGATAAGAATTTAGTAGTTGCAACAGAGACTGGTTCAAATAGGATT
6001 GGCTGTGTTTGGAACTAGCACTTGCCAGAATGTAATATTTGCTGTGAAGTGCTGAAAAGAAAAGTAACTTCCTTTTCATT
6081 TTTTTAGTGGCATAGTCTAAAACTGCTCACAATCCTTTTGAAAGACTAAAGAATAGGCCAGGTGTGGTGGCTCATGCCTG
6161 TAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAA
6241 CGCTGTCTCTACTAAAAATACAAAAAAAAATAGCTGGGCTTGGTGGCGGCCACCTGTAGTCCCCAGCTACTCGGGAGGCT
6321 GAGGCAGGAGAATCGCTGGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATGGCGCCATTGCACTCCAGCCCTGGAGA
6401 CAGTGCGAGACTGTGTCTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggAGGGUGGG-UGAGGGAGu 5'
            ||: |||: |:|||||| 
Target 5' caTCTAACCTAATTCCCTCc 3'
 4573 - 4592 145.00 -17.40
2 
miRNA  3' ggAGGGUGGGUGAGGGAGu 5'
            | ||| :| :|||||| 
Target 5' agTGCCAGTC-TTCCCTCt 3'
 4795 - 4812 136.00 -17.00
3 
miRNA  3' ggAGGGUGGGUGAGGGAGu 5'
            |||:  : :||||||: 
Target 5' gtTCCTTGTAGCTCCCTTc 3'
 4430 - 4448 133.00 -16.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30152213 15 COSMIC
COSN31558750 73 COSMIC
COSN30500904 76 COSMIC
COSN29461253 77 COSMIC
COSN30477038 89 COSMIC
COSN27440941 116 COSMIC
COSN31584834 116 COSMIC
COSN1332280 117 COSMIC
COSN1332281 117 COSMIC
COSN31603407 117 COSMIC
COSN30168418 139 COSMIC
COSN31573848 141 COSMIC
COSN26486037 455 COSMIC
COSN29921662 1066 COSMIC
COSN15767205 1297 COSMIC
COSN9906445 1817 COSMIC
COSN19468408 2103 COSMIC
COSN8797223 2195 COSMIC
COSN29644126 2247 COSMIC
COSN9781465 2389 COSMIC
COSN7871491 2451 COSMIC
COSN29805374 2931 COSMIC
COSN20333181 3225 COSMIC
COSN19567463 3387 COSMIC
COSN24793590 3461 COSMIC
COSN6319350 3527 COSMIC
COSN2160524 3787 COSMIC
COSN18950979 3890 COSMIC
COSN19532320 3983 COSMIC
COSN17183180 4336 COSMIC
COSN2160523 4811 COSMIC
COSN2160522 4891 COSMIC
COSN2160521 4906 COSMIC
COSN20102758 5354 COSMIC
COSN20449549 5786 COSMIC
COSN6319349 5945 COSMIC
rs77612799 487 GWAS
rs140664762 682 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs777554963 9 dbSNP
rs1230874702 13 dbSNP
rs758199563 14 dbSNP
rs920596601 19 dbSNP
rs867678720 22 dbSNP
rs751959645 31 dbSNP
rs752578223 31 dbSNP
rs778848997 33 dbSNP
rs754465981 35 dbSNP
rs753450440 38 dbSNP
rs1180135709 39 dbSNP
rs1278263333 40 dbSNP
rs1439983895 42 dbSNP
rs765946412 45 dbSNP
rs755728554 48 dbSNP
rs112426834 50 dbSNP
rs1258482206 62 dbSNP
rs938275147 70 dbSNP
rs759206098 71 dbSNP
rs907664472 73 dbSNP
rs1364922259 103 dbSNP
rs928130563 106 dbSNP
rs1259025718 109 dbSNP
rs1218081907 110 dbSNP
rs1171267363 112 dbSNP
rs111643517 113 dbSNP
rs761235200 113 dbSNP
rs1434730106 115 dbSNP
rs1304264176 116 dbSNP
rs1393813622 117 dbSNP
rs201661401 117 dbSNP
rs574855911 117 dbSNP
rs112376611 129 dbSNP
rs1309725153 129 dbSNP
rs1347282238 148 dbSNP
rs1233996403 161 dbSNP
rs933013209 165 dbSNP
rs866742263 174 dbSNP
rs556532224 176 dbSNP
rs1479761753 181 dbSNP
rs189354406 187 dbSNP
rs974788013 195 dbSNP
rs1459326415 201 dbSNP
rs1378113728 210 dbSNP
rs1192317523 217 dbSNP
rs574372197 229 dbSNP
rs1300843744 232 dbSNP
rs1252879656 233 dbSNP
rs1454353252 236 dbSNP
rs1177579862 250 dbSNP
rs1444160201 255 dbSNP
rs1371049905 262 dbSNP
rs1461158605 265 dbSNP
rs1168072966 266 dbSNP
rs1402197335 280 dbSNP
rs536272966 285 dbSNP
rs1438389676 307 dbSNP
rs1400567657 308 dbSNP
rs1325163351 314 dbSNP
rs964658939 320 dbSNP
rs1032637269 321 dbSNP
rs1387465127 322 dbSNP
rs369811718 328 dbSNP
rs535106135 334 dbSNP
rs1320487934 338 dbSNP
rs989227537 339 dbSNP
rs1273167465 342 dbSNP
rs957660378 343 dbSNP
rs1192483067 344 dbSNP
rs1259069317 357 dbSNP
rs74806583 369 dbSNP
rs1319725627 370 dbSNP
rs1427334874 370 dbSNP
rs77612745 370 dbSNP
rs1395212840 372 dbSNP
rs1419390815 373 dbSNP
rs1167475558 374 dbSNP
rs1424922071 377 dbSNP
rs752277700 383 dbSNP
rs1384360681 389 dbSNP
rs531603772 392 dbSNP
rs918686532 394 dbSNP
rs1279109715 398 dbSNP
rs965657766 399 dbSNP
rs1272928408 401 dbSNP
rs1322635979 402 dbSNP
rs1224431678 403 dbSNP
rs966530308 415 dbSNP
rs751386199 416 dbSNP
rs1004447340 418 dbSNP
rs1216675245 421 dbSNP
rs1264930179 424 dbSNP
rs1474018159 426 dbSNP
rs766580913 431 dbSNP
rs1414276664 436 dbSNP
rs1425265422 441 dbSNP
rs534489465 445 dbSNP
rs1156877280 447 dbSNP
rs1013662102 451 dbSNP
rs994931309 453 dbSNP
rs899136917 456 dbSNP
rs1198259150 461 dbSNP
rs1362768576 466 dbSNP
rs1413179585 467 dbSNP
rs1292826752 470 dbSNP
rs1055148295 471 dbSNP
rs577270368 472 dbSNP
rs763216335 484 dbSNP
rs1316811954 486 dbSNP
rs77612799 487 dbSNP
rs1287522904 488 dbSNP
rs1046678123 489 dbSNP
rs1209715201 490 dbSNP
rs945532189 492 dbSNP
rs1002575726 493 dbSNP
rs1484125987 501 dbSNP
rs1175248616 505 dbSNP
rs548958583 508 dbSNP
rs72913418 510 dbSNP
rs776954032 514 dbSNP
rs1432895604 516 dbSNP
rs879202523 537 dbSNP
rs192638020 543 dbSNP
rs1333776597 561 dbSNP
rs1359940732 569 dbSNP
rs1450684795 570 dbSNP
rs1296803445 575 dbSNP
rs1373318592 580 dbSNP
rs1420272007 581 dbSNP
rs1241525847 583 dbSNP
rs1312016613 583 dbSNP
rs921037830 586 dbSNP
rs144936910 594 dbSNP
rs1047500045 600 dbSNP
rs78996577 601 dbSNP
rs1444158812 604 dbSNP
rs1202268539 607 dbSNP
rs1232081849 615 dbSNP
rs922993104 616 dbSNP
rs1457992107 617 dbSNP
rs560373411 621 dbSNP
rs540077440 623 dbSNP
rs943019747 626 dbSNP
rs1452708728 627 dbSNP
rs1004136318 628 dbSNP
rs1293578719 634 dbSNP
rs1416367057 639 dbSNP
rs925262247 644 dbSNP
rs951160767 645 dbSNP
rs577733938 647 dbSNP
rs1447932839 654 dbSNP
rs1333979808 658 dbSNP
rs1369401831 660 dbSNP
rs780634724 661 dbSNP
rs994898737 662 dbSNP
rs1274927932 664 dbSNP
rs770696193 666 dbSNP
rs140664762 682 dbSNP
rs1271799585 683 dbSNP
rs1318356354 694 dbSNP
rs188850580 703 dbSNP
rs1441862849 705 dbSNP
rs1271238931 707 dbSNP
rs1381352580 712 dbSNP
rs1055244624 713 dbSNP
rs1178209250 714 dbSNP
rs1198317692 714 dbSNP
rs960783287 723 dbSNP
rs1034146967 724 dbSNP
rs1247377808 739 dbSNP
rs1479011720 747 dbSNP
rs532552526 751 dbSNP
rs1438042876 759 dbSNP
rs763451382 763 dbSNP
rs766262012 763 dbSNP
rs564220398 764 dbSNP
rs898488403 765 dbSNP
rs906571482 775 dbSNP
rs1405280359 777 dbSNP
rs1324722402 787 dbSNP
rs1332345635 791 dbSNP
rs1269790520 802 dbSNP
rs1427975064 805 dbSNP
rs1047044655 806 dbSNP
rs1340710841 811 dbSNP
rs1210502844 819 dbSNP
rs945655424 821 dbSNP
rs1488230269 824 dbSNP
rs1333807359 825 dbSNP
rs892604836 827 dbSNP
rs1053865088 830 dbSNP
rs184239935 863 dbSNP
rs1017211322 874 dbSNP
rs921006867 878 dbSNP
rs373444502 879 dbSNP
rs777386533 883 dbSNP
rs1196371009 887 dbSNP
rs887333498 897 dbSNP
rs1051225098 898 dbSNP
rs562976340 899 dbSNP
rs369639938 909 dbSNP
rs934124959 914 dbSNP
rs1398488019 924 dbSNP
rs1332430438 925 dbSNP
rs866319200 927 dbSNP
rs912237770 929 dbSNP
rs1401478327 949 dbSNP
rs151049717 956 dbSNP
rs983077991 957 dbSNP
rs1310625701 958 dbSNP
rs1339690201 967 dbSNP
rs951295995 982 dbSNP
rs375586260 987 dbSNP
rs943071700 996 dbSNP
rs1348417368 997 dbSNP
rs1238152848 998 dbSNP
rs1285385026 1002 dbSNP
rs879410706 1006 dbSNP
rs1219084274 1013 dbSNP
rs1292256433 1020 dbSNP
rs924926315 1023 dbSNP
rs1422085889 1025 dbSNP
rs1361794285 1026 dbSNP
rs559335987 1027 dbSNP
rs752277454 1039 dbSNP
rs973887212 1040 dbSNP
rs1379574435 1045 dbSNP
rs1380380378 1047 dbSNP
rs541228825 1050 dbSNP
rs142867235 1052 dbSNP
rs945293912 1059 dbSNP
rs958561842 1068 dbSNP
rs544367417 1070 dbSNP
rs558714374 1072 dbSNP
rs1265397866 1073 dbSNP
rs1335934136 1079 dbSNP
rs1333969794 1080 dbSNP
rs1034176690 1092 dbSNP
rs1002293410 1114 dbSNP
rs1488561705 1117 dbSNP
rs913780263 1119 dbSNP
rs537570519 1120 dbSNP
rs1024986416 1122 dbSNP
rs1344570014 1125 dbSNP
rs892708392 1128 dbSNP
rs192134490 1137 dbSNP
rs926767613 1153 dbSNP
rs780935956 1154 dbSNP
rs1239269506 1161 dbSNP
rs371997643 1178 dbSNP
rs1232123445 1188 dbSNP
rs148543545 1190 dbSNP
rs981246766 1192 dbSNP
rs186838711 1194 dbSNP
rs1054000240 1201 dbSNP
rs1173911408 1203 dbSNP
rs962772691 1206 dbSNP
rs1394080212 1221 dbSNP
rs936841560 1230 dbSNP
rs1017364377 1234 dbSNP
rs900014567 1237 dbSNP
rs1279516085 1240 dbSNP
rs1400124303 1243 dbSNP
rs762902750 1255 dbSNP
rs1299264670 1257 dbSNP
rs184966226 1259 dbSNP
rs1234242038 1269 dbSNP
rs1398476636 1269 dbSNP
rs750198345 1270 dbSNP
rs192697060 1276 dbSNP
rs776137514 1291 dbSNP
rs1198386214 1302 dbSNP
rs1029860299 1304 dbSNP
rs1459480835 1309 dbSNP
rs1173335488 1313 dbSNP
rs57155120 1314 dbSNP
rs1376180071 1320 dbSNP
rs1433197213 1325 dbSNP
rs899979640 1329 dbSNP
rs1038810377 1333 dbSNP
rs1007734004 1334 dbSNP
rs1191428550 1342 dbSNP
rs1171116515 1349 dbSNP
rs1443893123 1353 dbSNP
rs1402443735 1358 dbSNP
rs974024617 1359 dbSNP
rs1445170947 1364 dbSNP
rs1292802519 1368 dbSNP
rs958486907 1370 dbSNP
rs1387376046 1379 dbSNP
rs903577591 1386 dbSNP
rs1256627370 1389 dbSNP
rs1043415136 1392 dbSNP
rs1342400677 1397 dbSNP
rs73746493 1408 dbSNP
rs73746492 1409 dbSNP
rs386700141 1410 dbSNP
rs144537644 1414 dbSNP
rs751296615 1421 dbSNP
rs1265335301 1427 dbSNP
rs1032518943 1428 dbSNP
rs1211073335 1439 dbSNP
rs1001081775 1444 dbSNP
rs1477281697 1448 dbSNP
rs939223190 1454 dbSNP
rs1425510470 1456 dbSNP
rs1395845892 1460 dbSNP
rs867374345 1461 dbSNP
rs1333682600 1464 dbSNP
rs1368963581 1466 dbSNP
rs1458511676 1478 dbSNP
rs1466148758 1505 dbSNP
rs1358931431 1511 dbSNP
rs1399645514 1520 dbSNP
rs980603543 1527 dbSNP
rs547784218 1546 dbSNP
rs1423048062 1549 dbSNP
rs1342812484 1554 dbSNP
rs1312701713 1556 dbSNP
rs1322842209 1570 dbSNP
rs529601883 1570 dbSNP
rs13203798 1577 dbSNP
rs963140974 1583 dbSNP
rs1168390195 1584 dbSNP
rs1283277273 1601 dbSNP
rs909932370 1607 dbSNP
rs1473726548 1610 dbSNP
rs1216925031 1612 dbSNP
rs1039893091 1618 dbSNP
rs559291040 1620 dbSNP
rs982778313 1622 dbSNP
rs951378608 1642 dbSNP
rs1029891833 1652 dbSNP
rs1181037349 1653 dbSNP
rs1256861057 1657 dbSNP
rs77781474 1664 dbSNP
rs577045284 1675 dbSNP
rs1046880398 1684 dbSNP
rs1419132089 1687 dbSNP
rs1440547048 1694 dbSNP
rs1239554521 1698 dbSNP
rs1159501119 1701 dbSNP
rs141713011 1702 dbSNP
rs1446362935 1704 dbSNP
rs1456898465 1713 dbSNP
rs919595052 1716 dbSNP
rs1380272072 1719 dbSNP
rs1398307277 1729 dbSNP
rs543609327 1731 dbSNP
rs1211163443 1732 dbSNP
rs139926608 1742 dbSNP
rs1352363154 1745 dbSNP
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rs1209235329 1764 dbSNP
rs555054999 1766 dbSNP
rs971672557 1780 dbSNP
rs918007208 1782 dbSNP
rs1237444242 1793 dbSNP
rs1439220887 1799 dbSNP
rs1179306649 1814 dbSNP
rs1410506113 1816 dbSNP
rs1311690263 1817 dbSNP
rs1175540993 1820 dbSNP
rs1447824398 1830 dbSNP
rs1271386084 1832 dbSNP
rs988189973 1842 dbSNP
rs956674169 1848 dbSNP
rs190932974 1849 dbSNP
rs1326905812 1855 dbSNP
rs1376770904 1859 dbSNP
rs1009276990 1861 dbSNP
rs1407221644 1861 dbSNP
rs1364809299 1862 dbSNP
rs892118755 1879 dbSNP
rs1278844079 1885 dbSNP
rs1313764447 1889 dbSNP
rs1196507542 1894 dbSNP
rs1056424712 1898 dbSNP
rs1162605567 1900 dbSNP
rs1458144566 1902 dbSNP
rs1224656217 1903 dbSNP
rs1234675035 1905 dbSNP
rs1442475247 1906 dbSNP
rs774448321 1908 dbSNP
rs964309743 1912 dbSNP
rs1426106279 1919 dbSNP
rs1381970408 1933 dbSNP
rs1481646226 1937 dbSNP
rs1178810388 1939 dbSNP
rs939279995 1941 dbSNP
rs146017105 1973 dbSNP
rs1466614979 1977 dbSNP
rs1331385369 1978 dbSNP
rs1347645813 1980 dbSNP
rs368140274 1982 dbSNP
rs1275127629 1989 dbSNP
rs1008386055 1998 dbSNP
rs1291143068 2003 dbSNP
rs1209803502 2005 dbSNP
rs554135742 2007 dbSNP
rs1318245569 2021 dbSNP
rs891326990 2024 dbSNP
rs142665575 2036 dbSNP
rs771363810 2040 dbSNP
rs941171672 2042 dbSNP
rs761740144 2046 dbSNP
rs187968321 2055 dbSNP
rs1449987511 2058 dbSNP
rs1220889045 2063 dbSNP
rs982809403 2065 dbSNP
rs930005255 2071 dbSNP
rs922616930 2072 dbSNP
rs571872483 2086 dbSNP
rs1191705920 2110 dbSNP
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rs1423362370 2121 dbSNP
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rs1018493128 2132 dbSNP
rs979373131 2133 dbSNP
rs937025175 2143 dbSNP
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rs1284155857 5557 dbSNP
rs867172669 5557 dbSNP
rs71002573 5558 dbSNP
rs371160630 5560 dbSNP
rs1404525464 5564 dbSNP
rs1324191553 5568 dbSNP
rs1036352133 5572 dbSNP
rs1428470976 5573 dbSNP
rs1409705545 5575 dbSNP
rs1318648015 5576 dbSNP
rs1004547925 5581 dbSNP
rs557078419 5581 dbSNP
rs940685250 5582 dbSNP
rs192764708 5592 dbSNP
rs1228105905 5597 dbSNP
rs188357910 5604 dbSNP
rs1158963978 5605 dbSNP
rs1214208972 5606 dbSNP
rs557934508 5611 dbSNP
rs1464929523 5617 dbSNP
rs1481666317 5632 dbSNP
rs895088063 5633 dbSNP
rs1251777488 5636 dbSNP
rs1056214621 5639 dbSNP
rs1203760626 5649 dbSNP
rs757914551 5650 dbSNP
rs1158292980 5651 dbSNP
rs375714916 5658 dbSNP
rs1291723831 5665 dbSNP
rs922097512 5668 dbSNP
rs928720544 5669 dbSNP
rs1338934009 5673 dbSNP
rs1447505529 5673 dbSNP
rs1285176507 5675 dbSNP
rs539217881 5677 dbSNP
rs542114806 5679 dbSNP
rs957122116 5679 dbSNP
rs1032748838 5681 dbSNP
rs764560737 5683 dbSNP
rs998949515 5685 dbSNP
rs1358273195 5689 dbSNP
rs1312486403 5690 dbSNP
rs1416748915 5691 dbSNP
rs569024949 5691 dbSNP
rs763393400 5691 dbSNP
rs990395245 5691 dbSNP
rs550694743 5692 dbSNP
rs976238044 5693 dbSNP
rs1014178213 5697 dbSNP
rs966237302 5697 dbSNP
rs1408371603 5699 dbSNP
rs1014641693 5702 dbSNP
rs1288341478 5702 dbSNP
rs1351645665 5702 dbSNP
rs1004642681 5707 dbSNP
rs529323962 5707 dbSNP
rs1280282336 5709 dbSNP
rs1357340292 5709 dbSNP
rs887420548 5709 dbSNP
rs1299189741 5712 dbSNP
rs7452832 5717 dbSNP
rs1027751310 5723 dbSNP
rs1473547547 5723 dbSNP
rs1011943913 5728 dbSNP
rs1353307260 5730 dbSNP
rs1376032784 5732 dbSNP
rs1165856340 5734 dbSNP
rs1173432381 5735 dbSNP
rs1477725675 5735 dbSNP
rs1404612692 5741 dbSNP
rs895049400 5742 dbSNP
rs1307823606 5745 dbSNP
rs1371505421 5751 dbSNP
rs1412270265 5753 dbSNP
rs568486943 5754 dbSNP
rs1056346945 5767 dbSNP
rs1003292122 5770 dbSNP
rs1276043126 5772 dbSNP
rs777997521 5776 dbSNP
rs143704979 5786 dbSNP
rs1227155233 5790 dbSNP
rs994619036 5810 dbSNP
rs1483894156 5824 dbSNP
rs528787593 5827 dbSNP
rs1036404421 5830 dbSNP
rs113393774 5831 dbSNP
rs564598442 5844 dbSNP
rs1251311612 5854 dbSNP
rs1447914539 5864 dbSNP
rs940721867 5866 dbSNP
rs1168152138 5879 dbSNP
rs911906798 5882 dbSNP
rs1176732292 5885 dbSNP
rs1432001508 5893 dbSNP
rs946143249 5905 dbSNP
rs868161744 5906 dbSNP
rs1052159992 5907 dbSNP
rs546437790 5911 dbSNP
rs1479616268 5915 dbSNP
rs1387800556 5923 dbSNP
rs1271041101 5934 dbSNP
rs781483081 5937 dbSNP
rs989676532 5946 dbSNP
rs932033759 5948 dbSNP
rs1297844728 5952 dbSNP
rs1344116526 5954 dbSNP
rs1242331451 5955 dbSNP
rs922173341 5959 dbSNP
rs976334420 5975 dbSNP
rs1490127773 5985 dbSNP
rs1289085302 6005 dbSNP
rs966794806 6011 dbSNP
rs1317192619 6012 dbSNP
rs958173663 6024 dbSNP
rs908054326 6030 dbSNP
rs1463582933 6032 dbSNP
rs1221640983 6043 dbSNP
rs925731771 6059 dbSNP
rs983175020 6066 dbSNP
rs1430457833 6068 dbSNP
rs1163140441 6069 dbSNP
rs1368210878 6072 dbSNP
rs80241415 6074 dbSNP
rs1027441231 6077 dbSNP
rs1012323975 6078 dbSNP
rs1456232547 6078 dbSNP
rs1320888015 6081 dbSNP
rs967496254 6083 dbSNP
rs750378210 6092 dbSNP
rs778960893 6107 dbSNP
rs1003431136 6112 dbSNP
rs1340803963 6122 dbSNP
rs563851791 6126 dbSNP
rs1246952315 6134 dbSNP
rs1014312101 6137 dbSNP
rs902333110 6142 dbSNP
rs1266152419 6147 dbSNP
rs139892530 6153 dbSNP
rs1208192142 6156 dbSNP
rs555409238 6160 dbSNP
rs1486986487 6165 dbSNP
rs1364669101 6169 dbSNP
rs1180298841 6170 dbSNP
rs1158464044 6192 dbSNP
rs146012831 6193 dbSNP
rs1431268125 6197 dbSNP
rs757218944 6201 dbSNP
rs1410390350 6206 dbSNP
rs1472510975 6218 dbSNP
rs1200105542 6223 dbSNP
rs1390138598 6224 dbSNP
rs763316325 6233 dbSNP
rs1490110014 6236 dbSNP
rs555352563 6241 dbSNP
rs574179822 6242 dbSNP
rs1349812859 6247 dbSNP
rs1228882997 6250 dbSNP
rs144144179 6251 dbSNP
rs1318782126 6258 dbSNP
rs1259841052 6259 dbSNP
rs1208349823 6260 dbSNP
rs1212963500 6261 dbSNP
rs557262245 6271 dbSNP
rs1285693161 6272 dbSNP
rs1249991678 6285 dbSNP
rs1472562938 6287 dbSNP
rs1224640394 6288 dbSNP
rs535491709 6289 dbSNP
rs1299642602 6294 dbSNP
rs112118866 6295 dbSNP
rs944956704 6298 dbSNP
rs760375808 6312 dbSNP
rs1051785917 6313 dbSNP
rs931962194 6317 dbSNP
rs908147372 6318 dbSNP
rs1369675959 6323 dbSNP
rs1288519606 6334 dbSNP
rs566903078 6335 dbSNP
rs771612395 6344 dbSNP
rs111674784 6345 dbSNP
rs369955665 6347 dbSNP
rs774296685 6349 dbSNP
rs568739144 6351 dbSNP
rs540937546 6352 dbSNP
rs1482915383 6356 dbSNP
rs763923234 6359 dbSNP
rs1206564420 6360 dbSNP
rs1235098892 6367 dbSNP
rs1487753557 6376 dbSNP
rs1190138502 6381 dbSNP
rs1267381385 6384 dbSNP
rs1455333099 6396 dbSNP
rs1166301180 6397 dbSNP
rs1389382022 6403 dbSNP
rs1195043019 6406 dbSNP
rs1428909436 6407 dbSNP
rs1348049157 6415 dbSNP
rs1435598555 6417 dbSNP
rs1293038463 6419 dbSNP
rs945832906 6420 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ggaggguggguGAGGGAGu 5'
                     ||||||| 
Target 5' --------uuuCUCCCUCc 3'
 		1 - 11
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000536438.1 | 3UTR | UUUCUCCCUCCUCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
224 hsa-miR-6127 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT083286 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT113617 ATXN7L3B ataxin 7 like 3B 2 2
MIRT134910 CCND2 cyclin D2 2 2
MIRT177172 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT179548 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 2 2
MIRT180881 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT197052 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 2
MIRT197845 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT267391 TMEM138 transmembrane protein 138 2 2
MIRT312620 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT350379 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT366859 ZXDB zinc finger, X-linked, duplicated B 2 4
MIRT374545 AK2 adenylate kinase 2 2 2
MIRT402072 ATP6V1F ATPase H+ transporting V1 subunit F 2 4
MIRT442348 RAB6B RAB6B, member RAS oncogene family 2 2
MIRT442506 OSBP oxysterol binding protein 2 2
MIRT443823 SH3BP5L SH3 binding domain protein 5 like 2 2
MIRT444970 CDH7 cadherin 7 2 2
MIRT445064 C16orf87 chromosome 16 open reading frame 87 2 2
MIRT445323 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT446216 SLC25A44 solute carrier family 25 member 44 2 2
MIRT448107 TCN2 transcobalamin 2 2 2
MIRT448289 ZDHHC3 zinc finger DHHC-type containing 3 2 2
MIRT450258 MED30 mediator complex subunit 30 2 2
MIRT451022 MYH14 myosin heavy chain 14 2 8
MIRT451425 TJP3 tight junction protein 3 2 4
MIRT451930 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT452000 FKBP5 FK506 binding protein 5 2 2
MIRT452359 DLX6 distal-less homeobox 6 2 8
MIRT452462 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT453119 HOXC4 homeobox C4 2 2
MIRT453342 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT453485 PITPNM3 PITPNM family member 3 2 2
MIRT453520 C14orf144 chromosome 14 open reading frame 144 2 2
MIRT453553 PRR12 proline rich 12 2 2
MIRT454220 HLA-A major histocompatibility complex, class I, A 2 2
MIRT454302 ZNF134 zinc finger protein 134 2 2
MIRT454394 NRG4 neuregulin 4 2 2
MIRT454486 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 2 2
MIRT454695 KIAA1644 KIAA1644 2 2
MIRT454955 TPM2 tropomyosin 2 2 2
MIRT455021 UBA1 ubiquitin like modifier activating enzyme 1 2 2
MIRT455137 TBC1D25 TBC1 domain family member 25 2 2
MIRT455294 BCL2L1 BCL2 like 1 2 2
MIRT456535 TMEM63A transmembrane protein 63A 2 2
MIRT457109 DCX doublecortin 2 2
MIRT457438 NOL10 nucleolar protein 10 2 2
MIRT457774 ZC3H12B zinc finger CCCH-type containing 12B 2 4
MIRT458605 KCTD2 potassium channel tetramerization domain containing 2 2 2
MIRT459452 TMEM37 transmembrane protein 37 2 2
MIRT459580 NLGN2 neuroligin 2 2 2
MIRT459929 HHIP hedgehog interacting protein 2 8
MIRT460150 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460659 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460693 RNF157 ring finger protein 157 2 2
MIRT460892 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461550 ACTR3B ARP3 actin related protein 3 homolog B 2 6
MIRT462035 FAAH fatty acid amide hydrolase 2 2
MIRT462460 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT462806 NTN1 netrin 1 2 2
MIRT463002 ZNF740 zinc finger protein 740 2 2
MIRT463920 WNT3 Wnt family member 3 2 2
MIRT464597 UBN2 ubinuclein 2 2 2
MIRT464656 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 4
MIRT464999 TUBB2A tubulin beta 2A class IIa 2 10
MIRT465022 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT465368 TPM3 tropomyosin 3 2 6
MIRT465426 TP53 tumor protein p53 2 2
MIRT465919 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 4
MIRT465999 TMEM189 transmembrane protein 189 2 4
MIRT467355 SP2 Sp2 transcription factor 2 2
MIRT467775 SLC2A4 solute carrier family 2 member 4 2 2
MIRT467883 SLC22A23 solute carrier family 22 member 23 2 2
MIRT468303 SFT2D2 SFT2 domain containing 2 2 2
MIRT469153 RNF121 ring finger protein 121 2 2
MIRT469170 RNF111 ring finger protein 111 2 2
MIRT469568 RARA retinoic acid receptor alpha 2 2
MIRT469677 RAB5B RAB5B, member RAS oncogene family 2 4
MIRT470152 PSME3 proteasome activator subunit 3 2 2
MIRT470176 PSMD11 proteasome 26S subunit, non-ATPase 11 2 4
MIRT470780 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT471536 PAX5 paired box 5 2 2
MIRT472072 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT472186 NHP2L1 small nuclear ribonucleoprotein 13 2 2
MIRT472303 NFAT5 nuclear factor of activated T-cells 5 2 2
MIRT472701 MYBL1 MYB proto-oncogene like 1 2 2
MIRT473108 MLXIP MLX interacting protein 2 2
MIRT474786 KIAA0895L KIAA0895 like 2 2
MIRT475143 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT475216 IL2RB interleukin 2 receptor subunit beta 2 2
MIRT475441 HYOU1 hypoxia up-regulated 1 2 2
MIRT475636 HMGA1 high mobility group AT-hook 1 2 2
MIRT475767 HDLBP high density lipoprotein binding protein 2 2
MIRT476091 GRB2 growth factor receptor bound protein 2 2 2
MIRT476509 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT477048 FAM210A family with sequence similarity 210 member A 2 2
MIRT477390 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 2 2
MIRT477416 EN2 engrailed homeobox 2 2 2
MIRT478602 CTDSP2 CTD small phosphatase 2 2 2
MIRT478893 CREB3L2 cAMP responsive element binding protein 3 like 2 2 4
MIRT479128 CNBP CCHC-type zinc finger nucleic acid binding protein 2 4
MIRT479246 CHTF8 chromosome transmission fidelity factor 8 2 2
MIRT482311 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT482774 ANKHD1-EIF4EBP3 ANKHD1-EIF4EBP3 readthrough 2 4
MIRT482822 TRAF6 TNF receptor associated factor 6 2 2
MIRT483320 SLC35C2 solute carrier family 35 member C2 2 4
MIRT483343 CHRDL1 chordin like 1 2 8
MIRT483447 ARHGEF6 Rac/Cdc42 guanine nucleotide exchange factor 6 2 6
MIRT483630 NAV2 neuron navigator 2 2 2
MIRT484076 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 4
MIRT484100 EIF4EBP3 eukaryotic translation initiation factor 4E binding protein 3 2 4
MIRT484219 SUMO1 small ubiquitin-like modifier 1 2 6
MIRT484291 AIP aryl hydrocarbon receptor interacting protein 2 4
MIRT484368 GATA6 GATA binding protein 6 2 12
MIRT484388 ZNF710 zinc finger protein 710 2 4
MIRT484440 RAB7A RAB7A, member RAS oncogene family 2 4
MIRT484586 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT484620 SIX3 SIX homeobox 3 2 6
MIRT484854 ZNF70 zinc finger protein 70 2 4
MIRT485005 TNRC6B trinucleotide repeat containing 6B 2 4
MIRT485837 ARF3 ADP ribosylation factor 3 2 2
MIRT486164 TLE3 transducin like enhancer of split 3 2 2
MIRT486440 NDUFA5 NADH:ubiquinone oxidoreductase subunit A5 2 2
MIRT486578 ZNF619 zinc finger protein 619 2 2
MIRT486636 GFRA1 GDNF family receptor alpha 1 2 2
MIRT486696 GLYR1 glyoxylate reductase 1 homolog 2 2
MIRT486799 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT486870 DPF1 double PHD fingers 1 2 2
MIRT486904 TSPYL4 TSPY like 4 2 4
MIRT487053 C10orf55 chromosome 10 open reading frame 55 2 2
MIRT487141 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487247 KHSRP KH-type splicing regulatory protein 2 2
MIRT487618 C20orf96 chromosome 20 open reading frame 96 2 2
MIRT487705 CDK14 cyclin dependent kinase 14 2 2
MIRT487842 CLSTN1 calsyntenin 1 2 4
MIRT487915 FBXO44 F-box protein 44 2 2
MIRT487965 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT488131 GPR107 G protein-coupled receptor 107 2 2
MIRT488200 MAT1A methionine adenosyltransferase 1A 2 2
MIRT488247 DNLZ DNL-type zinc finger 2 4
MIRT488518 CD3E CD3e molecule 2 2
MIRT488889 ASTN2 astrotactin 2 2 4
MIRT488981 REXO2 RNA exonuclease 2 2 2
MIRT489063 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT489125 PPFIA3 PTPRF interacting protein alpha 3 2 2
MIRT489539 MRE11A MRE11 homolog, double strand break repair nuclease 2 14
MIRT489628 ALS2CL ALS2 C-terminal like 2 2
MIRT489861 ATP2A3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 2 2
MIRT490305 HOXB13 homeobox B13 2 2
MIRT490664 NKD1 naked cuticle homolog 1 2 6
MIRT490760 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT490839 ADD2 adducin 2 2 2
MIRT491236 KCNA5 potassium voltage-gated channel subfamily A member 5 2 2
MIRT491450 HOXB5 homeobox B5 2 2
MIRT491562 YAE1D1 Yae1 domain containing 1 2 2
MIRT491827 ZBTB7B zinc finger and BTB domain containing 7B 2 2
MIRT492800 PDE4A phosphodiesterase 4A 2 4
MIRT492887 NFIX nuclear factor I X 2 4
MIRT493404 KIAA0513 KIAA0513 2 2
MIRT493682 HAP1 huntingtin associated protein 1 2 2
MIRT493945 EPB41L1 erythrocyte membrane protein band 4.1 like 1 2 2
MIRT494042 DUSP7 dual specificity phosphatase 7 2 4
MIRT494183 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 2
MIRT494713 ARHGAP31 Rho GTPase activating protein 31 2 2
MIRT494903 UCP2 uncoupling protein 2 2 2
MIRT496600 TAGLN transgelin 2 2
MIRT497050 DYRK1B dual specificity tyrosine phosphorylation regulated kinase 1B 2 2
MIRT497289 TMEM119 transmembrane protein 119 2 2
MIRT498945 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT499011 CCDC50 coiled-coil domain containing 50 2 2
MIRT499027 MAG myelin associated glycoprotein 2 2
MIRT499525 SBK1 SH3 domain binding kinase 1 2 6
MIRT499568 CCDC88A coiled-coil domain containing 88A 2 2
MIRT499810 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT500176 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT502241 HOXC6 homeobox C6 2 2
MIRT502323 GIGYF1 GRB10 interacting GYF protein 1 2 4
MIRT503638 POLR2F RNA polymerase II subunit F 2 4
MIRT510642 TMEM167A transmembrane protein 167A 2 4
MIRT511034 NRF1 nuclear respiratory factor 1 2 2
MIRT512917 UBL4A ubiquitin like 4A 2 2
MIRT520184 WBP2 WW domain binding protein 2 2 2
MIRT527099 VSTM5 V-set and transmembrane domain containing 5 2 2
MIRT529299 AGK acylglycerol kinase 2 2
MIRT532910 ZNF385A zinc finger protein 385A 2 2
MIRT537881 EDA2R ectodysplasin A2 receptor 2 2
MIRT543762 UBXN2B UBX domain protein 2B 2 2
MIRT546668 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT550080 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT560282 HRH2 histamine receptor H2 2 2
MIRT560778 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT564299 MED26 mediator complex subunit 26 2 2
MIRT568820 TRIM67 tripartite motif containing 67 2 2
MIRT568907 ATP6V1B1 ATPase H+ transporting V1 subunit B1 2 2
MIRT569193 LRRC3C leucine rich repeat containing 3C 2 2
MIRT569696 FMNL3 formin like 3 2 2
MIRT569735 GPR173 G protein-coupled receptor 173 2 2
MIRT569775 SAMD14 sterile alpha motif domain containing 14 2 2
MIRT570218 SLC27A1 solute carrier family 27 member 1 2 2
MIRT570313 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT570536 RPH3A rabphilin 3A 2 2
MIRT570580 OTUD7B OTU deubiquitinase 7B 2 2
MIRT571304 TPCN2 two pore segment channel 2 2 2
MIRT571584 TOB2 transducer of ERBB2, 2 2 2
MIRT573278 NCAPH non-SMC condensin I complex subunit H 2 2
MIRT573669 HES6 hes family bHLH transcription factor 6 2 2
MIRT574435 SLC7A5 solute carrier family 7 member 5 2 2
MIRT608005 BTBD9 BTB domain containing 9 2 2
MIRT621341 SLC11A1 solute carrier family 11 member 1 2 2
MIRT636387 NAV1 neuron navigator 1 2 4
MIRT645810 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT649925 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT654189 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT661224 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT661448 MORC4 MORC family CW-type zinc finger 4 2 2
MIRT683122 MED28 mediator complex subunit 28 2 2
MIRT688013 GSN gelsolin 2 2
MIRT702788 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT710928 ING5 inhibitor of growth family member 5 2 2
MIRT713049 IFRD1 interferon related developmental regulator 1 2 2
MIRT713581 SLC2A8 solute carrier family 2 member 8 2 2
MIRT714786 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT719787 PRDM12 PR/SET domain 12 2 2
MIRT722678 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6127 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-6127 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-6127 Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-6127 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6127 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-6127 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-6127 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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