miRTarBase - #MIRT452912


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pre-miRNA Information
pre-miRNA hsa-mir-656   
Genomic Coordinates chr14: 101066724 - 101066801
Synonyms MIRN656, hsa-mir-656, MIR656
Description Homo sapiens miR-656 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-656-3p
Sequence 43| AAUAUUAUACAGUCAACCUCU |63
Evidence Experimental
Experiments Microarray
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs774217405 2 dbSNP
rs761669303 7 dbSNP
rs767470396 8 dbSNP
rs563910660 14 dbSNP
rs1289907362 17 dbSNP
rs1329300008 19 dbSNP
rs375626394 20 dbSNP
rs185468172 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF138   
Synonyms pHZ-32
Description zinc finger protein 138
Transcript NM_001160183   
Other Transcripts NM_006524   
Expression
Putative miRNA Targets on ZNF138
3'UTR of ZNF138
(miRNA target sites are highlighted)		 
>ZNF138|NM_001160183|3'UTR
   1 AGCAGAACATAAAAGATTCTTTCCAAAAAGTGACACTGAGCAGATATGGAAAATATGGACATAAGAATTTACAGTTAAGA
  81 AAAGGCTGTAAAAGTGTGGATGAGTGTAAGGGACACCAAGGAGGTTATAATGGACTTAACCAATGTTTGAAAATTACCAC
 161 AAGCAAAATATTTCAATGTAATAAATATGTAAAAGTCATGCATAAATTTTCAAATTCAAATAGACACAAGATAAGACATA
 241 CTGAAAATAAACATTTCAGATGTAAAGAATGTGACAAATCACTTTGCATGCTTTCACGCCTAACTCAACATAAAAAAATT
 321 CATACTAGAGAGAATTTCTACAAATGTGAAGAGTGTGGAAAAACCTTTAACTGGTCCACAAACCTTTCTAAACCTAAGAA
 401 AATTCATACTGGAGAAAAACCCTACAAATGTGAAGTATGTGGAAAAGCCTTTCACCAATCCTCAATCCTTACTAAACATA
 481 AGATAATTCGTACTGGAGAAAAACCCTATAAATGTGCACACTGTGGCAAAGCCTTTAAACAGTCCTCACACCTTACTAGA
 561 CATAAGATAATTCATACTGAAGAGAAACCCTACAAATGTGAACAATGTGGCAAGGTCTTTAAGCAGTCCCCAACCCTTAC
 641 TAAACATCAGATAATTTATACTGGAGAGGAACCATACAAATGTGAGGAATGTGGCAAAGCTTTTAACCTATCTTAACAAC
 721 TTACTGAACATAAGAAAATTTACACTAGAGAGAAAGCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTTTTCA
 801 ACCCTTATTACACATAAGATAATTCATAGCGGAGAGAAACCCCACAAATGTGAAGAATGTGGCAGAGCTTTTAACCAGTC
 881 CGCAAAGCTCACTGAACATAAGTTAATTCATACTGGAGAAAAACCCTACAAATGTAAAGAATGTGGAAAAGCTTTTCACC
 961 GATACTCAATCCTTAGTACACATAAGAAAATTCATACTGGGGAGAAACCCCACAAATGTGGAGAATGCGGAAAAGCCTTT
1041 AACTGGTCCTCAACTCTTATTACACATAAGATAATTCACAGTGGAGAAAAACCCTACAAATGTGAAGAATGTGGCAAAGC
1121 TTTTAACCAGTCCTCACACCTTATGAGACATAAGAAAATTCATAGTAAAGAGAAACCCTACAAATGTGAACAGTGTGGCA
1201 AGGTCTTTAAGAAGTCCTCAACTCTTACTGCACATAAGATCATTCATACTGGAGAGAAACCTTACAAATGTGAGGAATGT
1281 GGCAAAGGTTTTAGCCAACTCTCAAACCTTACTAAACACAAGAAGATTCATACTAGAGAGAAACCCTACAAATGTGAAGA
1361 ATGTGGCATATCTTTTAACCAGTTCTCACAACTTGCTATACATAAGATGATTCACACTTGAATGAAACCCTACAAATGTG
1441 AACGATGTGGCAGTTGTTTTAACTAGTTCTCGAACTTTACTATGCATAAGAAAATTCAAACTGGAGAGAAACTCTACAAA
1521 TGTGAAGAATGTGGCAAAGCTTTTAACCAAGTCTCAACACTTACTATACATAAGATAATTTATACTGGAGCAAAACCTTG
1601 GAAATTCAAAGAATGTGGTAAAACTTACAATCCTCAAAACTTCTTACACCTAAAATTCATGCAGGAGAGAAACACCACAA
1681 ATGTGAAAAATTTGGTAAATTCTTTAACAAGTCTTCAACCCTTTCTGCACATAATATAATTCATACTGGAGAGAAACCCC
1761 ACAAATATGAAGAATGTGGTAATGCTTTTAACCAATTCTCAAATCTTACTAAACAAAATTAATACTGAAAATGTTACAAA
1841 CCAGAAAAATGTGAAAATGATTTTAACAAAACCTTCAAATTTTTCTAAACATAAAGGAAATCATACTGGTAAGAAATTAT
1921 AAAAATGTGAAGAATGTGACAAAGCCTTTAAATGGTTGTCACACTTGATTGTAGGTAAGATAATTCATACTGGCAGAAAC
2001 TCCCAGAAGTGTGAAGAATATGGCAAAACTTTAATTCCTATACCTTATTGCACAGGAAAGCATTTATACTTCAGAAAATG
2081 TTGTACTGATATAAAGAATGTAGAAAAGCCATTAATATGTGCTTACATCTTATTCAACATTAGAGAGTTAGTACTTAATA
2161 AAAGCATTATAAATGCAATTACTGTCAAAACTCAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucuccAACUGACA--UAUUAUAa 5'
               ||||:|||  :||| || 
Target 5' cacacTTGATTGTAGGTAAGATa 3'
 1960 - 1982 118.00 -6.54
2 
miRNA  3' ucUCCAAC-UGAC-AUAUUauaa 5'
            | |||| |||| |||||    
Target 5' aaATGTTGTACTGATATAAagaa 3'
 2076 - 2098 111.00 -7.36
3 
miRNA  3' ucUCCAACUGACAUAUUAUaa 5'
            ||||      ||||||:  
Target 5' ggAGGT------TATAATGga 3'
 120 - 134 111.00 -7.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM5674614 8 COSMIC
COSM1091232 20 COSMIC
COSM9677064 24 COSMIC
COSM7173411 33 COSMIC
COSM3929139 35 COSMIC
COSM6290543 42 COSMIC
COSM8805003 42 COSMIC
COSM9518243 42 COSMIC
COSM3640046 65 COSMIC
COSM8903511 70 COSMIC
COSM1233596 85 COSMIC
COSM7398766 100 COSMIC
COSM7398768 112 COSMIC
COSM150303 113 COSMIC
COSM1091233 114 COSMIC
COSM6548329 122 COSMIC
COSM7216196 124 COSMIC
COSM4153056 129 COSMIC
COSM9598671 131 COSMIC
COSM5910599 142 COSMIC
COSM8641444 150 COSMIC
COSM3085246 152 COSMIC
COSM1233598 155 COSMIC
COSM9065355 158 COSMIC
COSM8077141 159 COSMIC
COSM8571123 171 COSMIC
COSM8976251 173 COSMIC
COSM3085250 175 COSMIC
COSM6204067 188 COSMIC
COSM5152637 194 COSMIC
COSM7665383 195 COSMIC
COSM1091234 196 COSMIC
COSM288631 208 COSMIC
COSM8180464 219 COSMIC
COSM1568902 234 COSMIC
COSM3640048 258 COSMIC
COSM7173413 274 COSMIC
COSM7426236 279 COSMIC
COSM9342215 281 COSMIC
COSM3394850 287 COSMIC
COSM3085256 319 COSMIC
COSM4450352 319 COSMIC
COSM1233604 320 COSMIC
COSM4973553 329 COSMIC
COSM1233602 333 COSMIC
COSM1091235 339 COSMIC
COSM3085258 344 COSMIC
COSM3923880 385 COSMIC
COSM1623038 389 COSMIC
COSM9733470 389 COSMIC
COSM3640050 406 COSMIC
COSM8547373 409 COSMIC
COSM3085262 416 COSMIC
COSM6456904 417 COSMIC
COSM1233600 420 COSMIC
COSM8157922 422 COSMIC
COSM7088849 432 COSMIC
COSM3663297 435 COSMIC
COSM3640052 437 COSMIC
COSM5554784 444 COSMIC
COSM3762798 450 COSMIC
COSM5542070 457 COSMIC
COSM7499234 457 COSMIC
COSM9676156 468 COSMIC
COSM8929402 472 COSMIC
COSM286738 490 COSMIC
COSM9267230 491 COSMIC
COSM4507120 494 COSMIC
COSM9603242 497 COSMIC
COSM9267220 501 COSMIC
COSM278232 504 COSMIC
COSM3929141 504 COSMIC
COSM8601752 516 COSMIC
COSM7534763 519 COSMIC
COSM7327862 526 COSMIC
COSM1755331 560 COSMIC
COSM5622244 561 COSMIC
COSM1330558 580 COSMIC
COSM7783772 580 COSMIC
COSM1723369 581 COSMIC
COSM9138235 588 COSMIC
COSM7962203 591 COSMIC
COSM7000397 602 COSMIC
COSM6828027 604 COSMIC
COSM4162338 610 COSMIC
COSM5145523 618 COSMIC
COSM6483644 626 COSMIC
COSM7798822 627 COSMIC
COSM9789689 636 COSMIC
COSM3085268 638 COSMIC
COSM4841420 651 COSMIC
COSM8335080 654 COSMIC
COSM8145596 664 COSMIC
COSM6828033 670 COSMIC
COSM6329096 675 COSMIC
COSM3703260 676 COSMIC
COSM6828029 687 COSMIC
COSM7755745 695 COSMIC
COSM9066098 713 COSMIC
COSM1091236 714 COSMIC
COSN28743271 724 COSMIC
COSN23540536 735 COSMIC
COSN31605424 738 COSMIC
COSN30452874 742 COSMIC
COSN27005867 748 COSMIC
COSN31503068 751 COSMIC
COSN14297285 757 COSMIC
COSN30517412 763 COSMIC
COSN30113913 809 COSMIC
COSN27005868 830 COSMIC
COSN31576184 831 COSMIC
COSN8810182 832 COSMIC
COSN30157272 837 COSMIC
COSN26580849 844 COSMIC
COSN31535854 850 COSMIC
COSN30185762 858 COSMIC
COSN32057783 864 COSMIC
COSN27005861 866 COSMIC
COSN30166818 877 COSMIC
COSN31572834 883 COSMIC
COSN31485599 889 COSMIC
COSN30152842 891 COSMIC
COSN26676598 904 COSMIC
COSN26568745 940 COSMIC
COSN15102868 961 COSMIC
COSN31553847 1029 COSMIC
COSN30483911 1049 COSMIC
COSN30527080 1060 COSMIC
COSN31520717 1078 COSMIC
COSN30108390 1079 COSMIC
COSN27005869 1089 COSMIC
COSN30118369 1092 COSMIC
COSN30184622 1095 COSMIC
COSN30486141 1095 COSMIC
COSN27005864 1097 COSMIC
COSN30154993 1146 COSMIC
COSN30156166 1146 COSMIC
COSN32059286 1155 COSMIC
COSN27005860 1156 COSMIC
COSN26581573 1194 COSMIC
COSN30106329 1203 COSMIC
COSN30159881 1212 COSMIC
COSN24405499 1237 COSMIC
COSN26569633 1242 COSMIC
COSN30462121 1242 COSMIC
COSN31572817 1257 COSMIC
COSN20075810 1270 COSMIC
COSN26559900 1275 COSMIC
COSN30103562 1282 COSMIC
COSN26561136 1289 COSMIC
COSN30109093 1312 COSMIC
COSN26582073 1336 COSMIC
COSN19656881 1354 COSMIC
COSN31603735 1394 COSMIC
COSN15287229 1429 COSMIC
COSN31544727 1439 COSMIC
COSN31605194 1473 COSMIC
COSN27005863 1514 COSMIC
COSN31562274 1517 COSMIC
COSN31610048 1554 COSMIC
COSN31608031 1706 COSMIC
COSN8810183 1712 COSMIC
COSN26505997 1736 COSMIC
COSN31488144 1761 COSMIC
COSN31662310 1794 COSMIC
COSN28706099 1807 COSMIC
COSN31490091 1866 COSMIC
COSN5661387 1960 COSMIC
COSN8033564 1966 COSMIC
COSN24878548 1991 COSMIC
COSN21063134 2110 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs754840981 1 dbSNP
rs1302952213 5 dbSNP
rs779386846 6 dbSNP
rs781243526 6 dbSNP
rs1315590480 9 dbSNP
rs867831389 13 dbSNP
rs1188568423 20 dbSNP
rs752425844 24 dbSNP
rs994204785 25 dbSNP
rs755973814 26 dbSNP
rs368036545 27 dbSNP
rs868168893 30 dbSNP
rs142487458 31 dbSNP
rs749460601 35 dbSNP
rs1220046810 40 dbSNP
rs771169255 44 dbSNP
rs1243445449 46 dbSNP
rs745628545 48 dbSNP
rs1490558905 51 dbSNP
rs1225077571 54 dbSNP
rs879557065 55 dbSNP
rs746008854 59 dbSNP
rs1259739401 64 dbSNP
rs1446541478 67 dbSNP
rs1015385382 74 dbSNP
rs772444347 78 dbSNP
rs1443364162 82 dbSNP
rs1163265196 84 dbSNP
rs776130234 85 dbSNP
rs1367710073 87 dbSNP
rs761266464 87 dbSNP
rs769085408 95 dbSNP
rs1382107600 96 dbSNP
rs777159071 100 dbSNP
rs1318442330 101 dbSNP
rs147588810 102 dbSNP
rs188707806 103 dbSNP
rs751016036 105 dbSNP
rs1367031496 106 dbSNP
rs1359974467 107 dbSNP
rs1247222902 110 dbSNP
rs201264316 111 dbSNP
rs10949946 113 dbSNP
rs1205751278 114 dbSNP
rs753534016 119 dbSNP
rs1460329377 123 dbSNP
rs35742014 124 dbSNP
rs922757940 125 dbSNP
rs4236203 128 dbSNP
rs1180134221 129 dbSNP
rs977154163 134 dbSNP
rs1371961661 136 dbSNP
rs1361664344 137 dbSNP
rs1452610442 154 dbSNP
rs771987140 157 dbSNP
rs1158580468 160 dbSNP
rs777500952 161 dbSNP
rs1432052468 167 dbSNP
rs757444713 168 dbSNP
rs551808152 172 dbSNP
rs1189962822 174 dbSNP
rs1479324864 175 dbSNP
rs745931171 177 dbSNP
rs772120741 179 dbSNP
rs140632990 180 dbSNP
rs773501328 180 dbSNP
rs1397514335 183 dbSNP
rs368349530 188 dbSNP
rs562147049 188 dbSNP
rs1304645491 189 dbSNP
rs771244165 191 dbSNP
rs150489174 197 dbSNP
rs761383196 199 dbSNP
rs761174132 200 dbSNP
rs777105687 202 dbSNP
rs112723600 206 dbSNP
rs762318799 209 dbSNP
rs1203560071 212 dbSNP
rs1264243235 213 dbSNP
rs1220866579 214 dbSNP
rs77854058 218 dbSNP
rs371168428 220 dbSNP
rs993063222 221 dbSNP
rs1250272394 224 dbSNP
rs774123744 225 dbSNP
rs759117647 227 dbSNP
rs766998537 228 dbSNP
rs775477398 228 dbSNP
rs752233010 232 dbSNP
rs760570137 233 dbSNP
rs145389450 235 dbSNP
rs1406684223 236 dbSNP
rs772971156 239 dbSNP
rs1203297583 242 dbSNP
rs1430544683 246 dbSNP
rs375428806 247 dbSNP
rs1471794532 248 dbSNP
rs762830644 248 dbSNP
rs1395583802 249 dbSNP
rs764198816 251 dbSNP
rs1177981594 252 dbSNP
rs1392144789 252 dbSNP
rs897650846 253 dbSNP
rs757110139 255 dbSNP
rs61732253 258 dbSNP
rs750599393 259 dbSNP
rs751390552 260 dbSNP
rs1230831838 261 dbSNP
rs758572430 262 dbSNP
rs780143417 263 dbSNP
rs888461137 268 dbSNP
rs1481188916 271 dbSNP
rs372262375 272 dbSNP
rs367741883 276 dbSNP
rs755520333 278 dbSNP
rs533947771 280 dbSNP
rs748523103 281 dbSNP
rs761400323 283 dbSNP
rs900120324 286 dbSNP
rs770131859 294 dbSNP
rs193182393 298 dbSNP
rs745490374 299 dbSNP
rs1376440191 301 dbSNP
rs1481320762 301 dbSNP
rs1462256254 303 dbSNP
rs149141100 304 dbSNP
rs967519664 306 dbSNP
rs774954181 308 dbSNP
rs759775584 309 dbSNP
rs1036801091 312 dbSNP
rs750123890 312 dbSNP
rs766888856 312 dbSNP
rs760232603 313 dbSNP
rs977185285 316 dbSNP
rs141320136 317 dbSNP
rs776484410 320 dbSNP
rs1308623137 324 dbSNP
rs1231021213 326 dbSNP
rs1290054755 327 dbSNP
rs545938727 328 dbSNP
rs1221359195 329 dbSNP
rs1246782439 338 dbSNP
rs765032249 342 dbSNP
rs957031456 344 dbSNP
rs201572738 351 dbSNP
rs758616999 355 dbSNP
rs1434697825 357 dbSNP
rs775799757 358 dbSNP
rs1170184391 359 dbSNP
rs1179483133 359 dbSNP
rs538231780 366 dbSNP
rs751677795 366 dbSNP
rs950027297 377 dbSNP
rs1160711310 378 dbSNP
rs755179685 378 dbSNP
rs781430050 381 dbSNP
rs981748536 382 dbSNP
rs1351667113 383 dbSNP
rs1428664180 384 dbSNP
rs748610868 388 dbSNP
rs368149803 391 dbSNP
rs1007931902 393 dbSNP
rs778165267 395 dbSNP
rs1437924596 400 dbSNP
rs1363851595 401 dbSNP
rs749659918 405 dbSNP
rs200050750 409 dbSNP
rs1244758069 415 dbSNP
rs775189192 416 dbSNP
rs1323173157 417 dbSNP
rs746668328 418 dbSNP
rs1259641714 419 dbSNP
rs375225024 421 dbSNP
rs1465281361 422 dbSNP
rs1190505814 426 dbSNP
rs369681693 431 dbSNP
rs1241002545 433 dbSNP
rs1443832168 436 dbSNP
rs1165725175 439 dbSNP
rs138905610 440 dbSNP
rs765129862 446 dbSNP
rs373463490 448 dbSNP
rs62456845 450 dbSNP
rs766707197 453 dbSNP
rs751768160 456 dbSNP
rs1487398153 457 dbSNP
rs888492267 459 dbSNP
rs759853560 464 dbSNP
rs1382722657 465 dbSNP
rs144805511 466 dbSNP
rs376621220 474 dbSNP
rs1230040152 475 dbSNP
rs778655038 478 dbSNP
rs1296960278 479 dbSNP
rs1386656741 480 dbSNP
rs369891838 484 dbSNP
rs373429625 485 dbSNP
rs1329289634 486 dbSNP
rs1210490162 488 dbSNP
rs754223101 490 dbSNP
rs61737641 491 dbSNP
rs779262425 494 dbSNP
rs746614751 495 dbSNP
rs1468787584 505 dbSNP
rs1176913583 509 dbSNP
rs754265754 513 dbSNP
rs768327006 514 dbSNP
rs780650846 515 dbSNP
rs1174403661 516 dbSNP
rs747662211 518 dbSNP
rs1415556400 519 dbSNP
rs769757728 523 dbSNP
rs1198098357 524 dbSNP
rs1353188955 530 dbSNP
rs1439530799 532 dbSNP
rs773091415 533 dbSNP
rs1350752779 534 dbSNP
rs1482594174 541 dbSNP
rs1229656792 543 dbSNP
rs1272090562 544 dbSNP
rs762955894 545 dbSNP
rs770796502 546 dbSNP
rs774313550 548 dbSNP
rs1219803512 550 dbSNP
rs1280471070 554 dbSNP
rs759794855 561 dbSNP
rs755268721 562 dbSNP
rs779913483 563 dbSNP
rs1484159424 564 dbSNP
rs750310705 565 dbSNP
rs779487477 568 dbSNP
rs1197289610 570 dbSNP
rs752806675 572 dbSNP
rs760729781 576 dbSNP
rs1285734228 581 dbSNP
rs1174868014 583 dbSNP
rs1405983739 585 dbSNP
rs534139527 593 dbSNP
rs1022654900 594 dbSNP
rs1306432056 599 dbSNP
rs1409701952 600 dbSNP
rs764238219 604 dbSNP
rs754240219 606 dbSNP
rs1393306653 613 dbSNP
rs1411295636 614 dbSNP
rs1300735459 615 dbSNP
rs757782160 617 dbSNP
rs1437074258 618 dbSNP
rs1397313461 624 dbSNP
rs1276600439 625 dbSNP
rs1172136333 628 dbSNP
rs746866388 631 dbSNP
rs200971341 634 dbSNP
rs1178785172 635 dbSNP
rs150799949 636 dbSNP
rs754605276 637 dbSNP
rs1177033463 641 dbSNP
rs780766078 646 dbSNP
rs1249286739 652 dbSNP
rs1220620770 653 dbSNP
rs747690933 658 dbSNP
rs1193876587 660 dbSNP
rs769123319 661 dbSNP
rs777359561 663 dbSNP
rs1198286468 665 dbSNP
rs756089534 666 dbSNP
rs749134509 668 dbSNP
rs1169559879 669 dbSNP
rs12537506 671 dbSNP
rs1392481371 673 dbSNP
rs771027278 678 dbSNP
rs748551069 679 dbSNP
rs774262656 683 dbSNP
rs759458370 687 dbSNP
rs772416475 688 dbSNP
rs1324957270 695 dbSNP
rs775505417 696 dbSNP
rs772220747 697 dbSNP
rs1328927033 699 dbSNP
rs760963860 702 dbSNP
rs777752766 703 dbSNP
rs754907977 706 dbSNP
rs1483322881 711 dbSNP
rs1336639606 715 dbSNP
rs747059809 715 dbSNP
rs1415004790 720 dbSNP
rs776803306 726 dbSNP
rs111420731 729 dbSNP
rs1211644547 730 dbSNP
rs1282265536 731 dbSNP
rs1446916753 735 dbSNP
rs765782318 738 dbSNP
rs984627087 741 dbSNP
rs750773897 745 dbSNP
rs1456587331 746 dbSNP
rs781151303 746 dbSNP
rs1443225700 750 dbSNP
rs1183394630 751 dbSNP
rs771340238 753 dbSNP
rs766771979 756 dbSNP
rs111399098 757 dbSNP
rs1470381521 762 dbSNP
rs755816377 764 dbSNP
rs1456610491 767 dbSNP
rs868278516 777 dbSNP
rs1018000331 791 dbSNP
rs35725705 802 dbSNP
rs750375350 805 dbSNP
rs904505892 806 dbSNP
rs1263887594 807 dbSNP
rs1204874125 808 dbSNP
rs1464898828 809 dbSNP
rs921290916 811 dbSNP
rs1000226067 812 dbSNP
rs1282756563 815 dbSNP
rs17146394 821 dbSNP
rs933954312 822 dbSNP
rs1051351799 827 dbSNP
rs903478868 830 dbSNP
rs956150754 831 dbSNP
rs6460195 832 dbSNP
rs1385103533 833 dbSNP
rs1315737354 835 dbSNP
rs552256015 839 dbSNP
rs1434457908 840 dbSNP
rs1024486299 846 dbSNP
rs1320178867 849 dbSNP
rs1401112002 850 dbSNP
rs970688335 851 dbSNP
rs1054658843 857 dbSNP
rs1446017825 859 dbSNP
rs748979560 863 dbSNP
rs569304038 864 dbSNP
rs1178528230 866 dbSNP
rs1012687640 867 dbSNP
rs1386418808 879 dbSNP
rs1424985473 882 dbSNP
rs1023108022 883 dbSNP
rs531952167 886 dbSNP
rs971094630 894 dbSNP
rs1361944611 899 dbSNP
rs1002454268 906 dbSNP
rs1315978196 907 dbSNP
rs1227825694 909 dbSNP
rs1348904756 911 dbSNP
rs548565183 913 dbSNP
rs1271888060 917 dbSNP
rs1025933852 929 dbSNP
rs950669677 931 dbSNP
rs530809656 934 dbSNP
rs918296293 938 dbSNP
rs984658239 943 dbSNP
rs541601767 950 dbSNP
rs1167539661 953 dbSNP
rs1397793260 954 dbSNP
rs569841069 959 dbSNP
rs191492549 961 dbSNP
rs13243034 962 dbSNP
rs570522585 964 dbSNP
rs1246633347 973 dbSNP
rs1043637506 982 dbSNP
rs183700797 983 dbSNP
rs1204648717 985 dbSNP
rs1305858320 994 dbSNP
rs924594957 1001 dbSNP
rs1215089389 1005 dbSNP
rs1321327606 1005 dbSNP
rs934926044 1019 dbSNP
rs1281280690 1023 dbSNP
rs1406589466 1024 dbSNP
rs1054691834 1029 dbSNP
rs372259695 1030 dbSNP
rs1260271294 1031 dbSNP
rs777797931 1035 dbSNP
rs1013468496 1038 dbSNP
rs556641911 1043 dbSNP
rs1456672594 1046 dbSNP
rs1198431583 1048 dbSNP
rs1053113471 1049 dbSNP
rs1174862046 1057 dbSNP
rs906985849 1061 dbSNP
rs1484566027 1062 dbSNP
rs1002568827 1067 dbSNP
rs368926214 1072 dbSNP
rs1014362346 1074 dbSNP
rs747259046 1078 dbSNP
rs1179583680 1081 dbSNP
rs1025964913 1097 dbSNP
rs1261216806 1101 dbSNP
rs1568913 1103 dbSNP
rs1172288349 1104 dbSNP
rs1006111034 1119 dbSNP
rs970236790 1129 dbSNP
rs1221856351 1133 dbSNP
rs1016564450 1134 dbSNP
rs1375147448 1140 dbSNP
rs1298371520 1141 dbSNP
rs1446700696 1141 dbSNP
rs964581282 1145 dbSNP
rs1002141939 1146 dbSNP
rs1017180363 1150 dbSNP
rs1471208264 1151 dbSNP
rs544382443 1157 dbSNP
rs1430428786 1163 dbSNP
rs1427651939 1167 dbSNP
rs761160127 1169 dbSNP
rs1417685836 1173 dbSNP
rs1976918 1179 dbSNP
rs1482981511 1185 dbSNP
rs1241293575 1190 dbSNP
rs867088831 1191 dbSNP
rs955101246 1194 dbSNP
rs1461765824 1199 dbSNP
rs777299927 1205 dbSNP
rs986549887 1210 dbSNP
rs1445799623 1213 dbSNP
rs1267414564 1214 dbSNP
rs1213443314 1222 dbSNP
rs574784424 1223 dbSNP
rs761944874 1225 dbSNP
rs1307299494 1234 dbSNP
rs1227335928 1240 dbSNP
rs910992385 1240 dbSNP
rs566633620 1245 dbSNP
rs1452717325 1257 dbSNP
rs560147343 1267 dbSNP
rs942542001 1271 dbSNP
rs990424388 1274 dbSNP
rs914769901 1278 dbSNP
rs1347271589 1280 dbSNP
rs188023354 1284 dbSNP
rs1316359215 1293 dbSNP
rs532145192 1296 dbSNP
rs1218408785 1299 dbSNP
rs1044992521 1301 dbSNP
rs935246295 1302 dbSNP
rs1264193403 1310 dbSNP
rs1185561829 1312 dbSNP
rs765363747 1313 dbSNP
rs907354291 1318 dbSNP
rs1053081356 1320 dbSNP
rs575134250 1328 dbSNP
rs1314328870 1330 dbSNP
rs938457333 1332 dbSNP
rs1261002054 1333 dbSNP
rs1047444832 1334 dbSNP
rs886118106 1336 dbSNP
rs1261031881 1339 dbSNP
rs891822162 1340 dbSNP
rs1356908902 1341 dbSNP
rs1005805261 1346 dbSNP
rs4492250 1348 dbSNP
rs1016182998 1349 dbSNP
rs3763506 1354 dbSNP
rs758635214 1357 dbSNP
rs562616480 1360 dbSNP
rs996097744 1362 dbSNP
rs1295533374 1373 dbSNP
rs1001669897 1376 dbSNP
rs1017065019 1379 dbSNP
rs1364531194 1382 dbSNP
rs1289887138 1383 dbSNP
rs962904023 1393 dbSNP
rs1030604765 1397 dbSNP
rs531339774 1399 dbSNP
rs1195286046 1402 dbSNP
rs536803484 1402 dbSNP
rs986896554 1403 dbSNP
rs150580017 1408 dbSNP
rs1025875106 1412 dbSNP
rs561992016 1428 dbSNP
rs1458885979 1433 dbSNP
rs527968828 1435 dbSNP
rs1321231953 1437 dbSNP
rs986906819 1439 dbSNP
rs766579291 1444 dbSNP
rs751328280 1445 dbSNP
rs964139163 1446 dbSNP
rs1175190778 1451 dbSNP
rs1345733514 1467 dbSNP
rs1400680293 1469 dbSNP
rs979256869 1472 dbSNP
rs1249044564 1473 dbSNP
rs1370340602 1478 dbSNP
rs1228969450 1483 dbSNP
rs1309845342 1486 dbSNP
rs1300193825 1502 dbSNP
rs1338673551 1512 dbSNP
rs1399578557 1517 dbSNP
rs914571362 1521 dbSNP
rs552385253 1528 dbSNP
rs1343981693 1530 dbSNP
rs1305212134 1533 dbSNP
rs192262040 1541 dbSNP
rs1370094903 1544 dbSNP
rs935213655 1549 dbSNP
rs796132839 1556 dbSNP
rs1395865712 1558 dbSNP
rs980361494 1561 dbSNP
rs564390717 1563 dbSNP
rs928823976 1565 dbSNP
rs149239632 1567 dbSNP
rs754820132 1571 dbSNP
rs1487689468 1572 dbSNP
rs1431087655 1575 dbSNP
rs938822210 1580 dbSNP
rs1436933938 1586 dbSNP
rs1247963315 1591 dbSNP
rs1197090093 1594 dbSNP
rs1248099013 1596 dbSNP
rs539837407 1619 dbSNP
rs1464925 1629 dbSNP
rs1223380055 1635 dbSNP
rs1321871666 1636 dbSNP
rs1285511192 1644 dbSNP
rs1190468607 1648 dbSNP
rs1224500091 1648 dbSNP
rs950075564 1652 dbSNP
rs886147785 1660 dbSNP
rs1408625508 1674 dbSNP
rs1464926 1675 dbSNP
rs1397245600 1682 dbSNP
rs1336019981 1684 dbSNP
rs1037803703 1694 dbSNP
rs144461184 1698 dbSNP
rs1431348026 1703 dbSNP
rs1176965002 1706 dbSNP
rs1469419951 1709 dbSNP
rs937434750 1711 dbSNP
rs1464927 1712 dbSNP
rs540513294 1720 dbSNP
rs569280595 1722 dbSNP
rs185811325 1727 dbSNP
rs994325635 1732 dbSNP
rs1460420599 1746 dbSNP
rs1265522155 1752 dbSNP
rs1025845548 1754 dbSNP
rs1330843092 1756 dbSNP
rs1350367868 1757 dbSNP
rs999320100 1763 dbSNP
rs1278028893 1766 dbSNP
rs1274674013 1768 dbSNP
rs777320996 1769 dbSNP
rs1377757621 1776 dbSNP
rs891411814 1778 dbSNP
rs560421395 1780 dbSNP
rs76428222 1793 dbSNP
rs1337278202 1804 dbSNP
rs1399927452 1810 dbSNP
rs1382448890 1814 dbSNP
rs1007854296 1826 dbSNP
rs1291567215 1845 dbSNP
rs78251807 1846 dbSNP
rs1181276291 1851 dbSNP
rs1220521228 1852 dbSNP
rs1233295261 1854 dbSNP
rs1441342665 1860 dbSNP
rs770585303 1861 dbSNP
rs1245551536 1865 dbSNP
rs776970543 1866 dbSNP
rs1464928 1868 dbSNP
rs1207259793 1873 dbSNP
rs1466776220 1874 dbSNP
rs1219948711 1880 dbSNP
rs928856486 1893 dbSNP
rs960197918 1899 dbSNP
rs983622374 1903 dbSNP
rs1439149641 1904 dbSNP
rs1385035067 1911 dbSNP
rs1284730154 1912 dbSNP
rs908040378 1920 dbSNP
rs1324473028 1922 dbSNP
rs956516924 1931 dbSNP
rs988010970 1933 dbSNP
rs1364622954 1940 dbSNP
rs941802195 1941 dbSNP
rs1393105009 1954 dbSNP
rs1403861703 1955 dbSNP
rs1323168044 1956 dbSNP
rs1401434542 1966 dbSNP
rs139555092 1975 dbSNP
rs921609514 1977 dbSNP
rs981437312 1980 dbSNP
rs1475415470 1985 dbSNP
rs931633120 1988 dbSNP
rs1195843159 1991 dbSNP
rs927304728 1997 dbSNP
rs1268486508 2007 dbSNP
rs1220475685 2009 dbSNP
rs937381732 2010 dbSNP
rs576084442 2018 dbSNP
rs1353798795 2024 dbSNP
rs1249021985 2027 dbSNP
rs1051685472 2028 dbSNP
rs1227342905 2042 dbSNP
rs1271830611 2043 dbSNP
rs1400422997 2053 dbSNP
rs1344590669 2057 dbSNP
rs1300925418 2063 dbSNP
rs890417547 2064 dbSNP
rs1258307273 2067 dbSNP
rs1327673582 2071 dbSNP
rs930143994 2071 dbSNP
rs1458875776 2073 dbSNP
rs7350059 2075 dbSNP
rs1047222221 2079 dbSNP
rs1418041649 2081 dbSNP
rs541599826 2087 dbSNP
rs1478367121 2088 dbSNP
rs999436131 2092 dbSNP
rs1428955899 2093 dbSNP
rs1197541652 2100 dbSNP
rs1490921142 2101 dbSNP
rs1008910373 2103 dbSNP
rs1017918246 2111 dbSNP
rs747327486 2115 dbSNP
rs1275061242 2117 dbSNP
rs1219111904 2118 dbSNP
rs1322567492 2122 dbSNP
rs145080783 2127 dbSNP
rs1225106241 2129 dbSNP
rs562950834 2144 dbSNP
rs1188304381 2146 dbSNP
rs1297220194 2148 dbSNP
rs370093076 2149 dbSNP
rs1370216050 2157 dbSNP
rs1021681936 2165 dbSNP
rs1355725026 2166 dbSNP
rs527902592 2179 dbSNP
rs76640005 2183 dbSNP
rs1466537255 2189 dbSNP
rs1032090317 2193 dbSNP
rs1174795527 2194 dbSNP
rs1424622887 2194 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000440598.1 | 3UTR | UCUUCAACCCUUUCUGCACAUAAUAUAAUUCAUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUAD 0.797 0.03 0.771 0.04 6 Click to see details
STAD 0.362 0.03 0.324 0.05 26 Click to see details
KICH -0.744 0.04 -0.714 0.06 6 Click to see details
LIHC -0.257 0.07 -0.139 0.21 35 Click to see details
UCEC 0.387 0.1 0.445 0.06 13 Click to see details
CHOL -0.61 0.1 -0.257 0.31 6 Click to see details
KIRC 0.437 0.14 0.429 0.14 8 Click to see details
ESCA 0.439 0.16 0.429 0.17 7 Click to see details
LUSC 0.208 0.16 0.250 0.12 24 Click to see details
HNSC 0.106 0.27 0.169 0.16 36 Click to see details
PRAD -0.086 0.3 -0.064 0.35 39 Click to see details
THCA 0.156 0.31 0.168 0.3 12 Click to see details
BLCA 0.121 0.32 0.103 0.35 17 Click to see details
BRCA 0.044 0.37 0.040 0.38 56 Click to see details
PAAD 0.185 0.41 -0.200 0.4 4 Click to see details
KIRP 0.025 0.47 0.050 0.45 9 Click to see details
CESC 0.06 0.48 0.500 0.33 3 Click to see details
PCPG -0.006 0.5 0.500 0.33 3 Click to see details
PCPG -0.006 0.5 0.500 0.33 3 Click to see details
117 hsa-miR-656-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT054590 BMPR1A bone morphogenetic protein receptor type 1A 3 1
MIRT070954 ZFP36L1 ZFP36 ring finger protein like 1 2 2
MIRT080090 C18ORF25 chromosome 18 open reading frame 25 2 6
MIRT107594 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 8
MIRT113091 CCND2 cyclin D2 2 2
MIRT156603 COQ10B coenzyme Q10B 2 2
MIRT216714 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT261132 TRIM8 tripartite motif containing 8 2 2
MIRT262930 ARID5B AT-rich interaction domain 5B 2 4
MIRT267010 ZDHHC5 zinc finger DHHC-type containing 5 2 6
MIRT338333 IKZF4 IKAROS family zinc finger 4 2 6
MIRT378852 ITGB8 integrin subunit beta 8 2 2
MIRT441577 EXOC5 exocyst complex component 5 2 2
MIRT441972 RNF41 ring finger protein 41 2 2
MIRT442617 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 2
MIRT447730 DGKH diacylglycerol kinase eta 2 2
MIRT449237 KIAA0408 KIAA0408 2 2
MIRT449884 PRMT7 protein arginine methyltransferase 7 2 2
MIRT452912 ZNF138 zinc finger protein 138 2 2
MIRT458867 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT480582 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT483118 SH3BP5 SH3 domain binding protein 5 2 2
MIRT493755 GNG5 G protein subunit gamma 5 2 8
MIRT504369 ARID1B AT-rich interaction domain 1B 2 4
MIRT505523 SPATA2 spermatogenesis associated 2 2 10
MIRT505628 SLC16A1 solute carrier family 16 member 1 2 6
MIRT506382 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT507045 HIC2 HIC ZBTB transcriptional repressor 2 2 6
MIRT507416 ELK4 ELK4, ETS transcription factor 2 4
MIRT508194 PTP4A2 protein tyrosine phosphatase type IVA, member 2 2 6
MIRT508599 CREB1 cAMP responsive element binding protein 1 2 6
MIRT508617 HOXC4 homeobox C4 2 8
MIRT508692 NRIP1 nuclear receptor interacting protein 1 2 4
MIRT509017 CUL2 cullin 2 2 8
MIRT509079 RABGAP1 RAB GTPase activating protein 1 2 10
MIRT509970 CRIM1 cysteine rich transmembrane BMP regulator 1 2 4
MIRT510172 STARD8 StAR related lipid transfer domain containing 8 2 8
MIRT510370 ZNF703 zinc finger protein 703 2 6
MIRT510667 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT511116 NFIB nuclear factor I B 2 6
MIRT511357 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 6
MIRT511423 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 6
MIRT512295 AMER1 APC membrane recruitment protein 1 2 6
MIRT514084 MGAT4C MGAT4 family member C 2 4
MIRT516900 RAI1 retinoic acid induced 1 2 4
MIRT516944 SLC35F6 solute carrier family 35 member F6 2 8
MIRT518816 AKAP8 A-kinase anchoring protein 8 2 4
MIRT519244 TNFSF9 TNF superfamily member 9 2 4
MIRT519573 ZXDA zinc finger, X-linked, duplicated A 2 6
MIRT519870 ZFP62 ZFP62 zinc finger protein 2 6
MIRT520892 STRN striatin 2 4
MIRT520963 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 6
MIRT521932 PHF8 PHD finger protein 8 2 10
MIRT522188 NR2C2 nuclear receptor subfamily 2 group C member 2 2 6
MIRT523594 FZD5 frizzled class receptor 5 2 4
MIRT523810 FAM19A1 family with sequence similarity 19 member A1, C-C motif chemokine like 2 4
MIRT527780 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT528048 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT528241 SPIN4 spindlin family member 4 2 2
MIRT534474 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT538907 BRI3BP BRI3 binding protein 2 2
MIRT540705 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT542593 ZBTB18 zinc finger and BTB domain containing 18 2 4
MIRT543065 BACH2 BTB domain and CNC homolog 2 2 4
MIRT543491 MDM2 MDM2 proto-oncogene 2 2
MIRT544063 KIAA1462 junctional cadherin 5 associated 2 2
MIRT545530 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT546703 RORA RAR related orphan receptor A 2 4
MIRT548248 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT549271 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT549402 AKAP11 A-kinase anchoring protein 11 2 2
MIRT550252 EIF2B1 eukaryotic translation initiation factor 2B subunit alpha 2 2
MIRT550552 ARSK arylsulfatase family member K 2 2
MIRT550793 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2 2
MIRT551098 TTC8 tetratricopeptide repeat domain 8 2 2
MIRT551417 LRRC31 leucine rich repeat containing 31 2 2
MIRT551883 EPHA1 EPH receptor A1 2 2
MIRT552558 ZFP36L2 ZFP36 ring finger protein like 2 2 2
MIRT553764 TAGLN2 transgelin 2 2 2
MIRT553817 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554978 RAB5C RAB5C, member RAS oncogene family 2 2
MIRT556427 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT556464 LMNB2 lamin B2 2 4
MIRT559180 BRAP BRCA1 associated protein 2 2
MIRT559549 ARGLU1 arginine and glutamate rich 1 2 2
MIRT560578 ZNF460 zinc finger protein 460 2 2
MIRT561173 TMEM30A transmembrane protein 30A 2 2
MIRT563712 SVIP small VCP interacting protein 2 4
MIRT564563 CCDC80 coiled-coil domain containing 80 2 2
MIRT567650 EXOC8 exocyst complex component 8 2 2
MIRT568539 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT571343 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT573904 SRP9 signal recognition particle 9 2 2
MIRT611915 RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 2 2
MIRT612269 SEMA3F semaphorin 3F 2 2
MIRT614457 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT615492 AJAP1 adherens junctions associated protein 1 2 4
MIRT639515 FYB FYN binding protein 1 2 2
MIRT674959 PEX2 peroxisomal biogenesis factor 2 2 2
MIRT687808 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT698408 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT698527 TFRC transferrin receptor 2 2
MIRT702313 L1CAM L1 cell adhesion molecule 2 4
MIRT707252 SIK3 SIK family kinase 3 2 2
MIRT707265 RRAGC Ras related GTP binding C 2 2
MIRT707519 HHIP hedgehog interacting protein 2 2
MIRT707529 CXCL5 C-X-C motif chemokine ligand 5 2 2
MIRT707762 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT707793 TTYH3 tweety family member 3 2 2
MIRT707815 TMEM178B transmembrane protein 178B 2 2
MIRT708108 HERPUD2 HERPUD family member 2 2 2
MIRT708173 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT711910 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT714484 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT715016 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT715669 SCOC short coiled-coil protein 2 2
MIRT725386 METTL8 methyltransferase like 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-656 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-656 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-656 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-656-3p Cisplatin 5460033 NSC119875 approved sensitive Low Cervical Cancer tissue
hsa-miR-656-3p Fluorouracil 3385 NSC19893 approved sensitive Low Colorectal Cancer cell line (NCM460, SW480, RKO, DLD1, SW48, HCT-116, LOVO, HT-29, HCT8, SW620)
hsa-miR-656-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-656-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-656-3p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-656-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-656-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-656-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-656-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM47)
hsa-miR-656-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (RPMI2650)
hsa-miR-656-3p Sunitinib 5329102 NSC750690 approved sensitive tissue (CardB)
hsa-miR-656-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-656-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-656-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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