miRTarBase - #MIRT452982


—
pre-miRNA Information
pre-miRNA hsa-mir-3650   
Genomic Coordinates chr5: 38557502 - 38557561
Description Homo sapiens miR-3650 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3650
Sequence 4| AGGUGUGUCUGUAGAGUCC |22
Evidence Experimental
Experiments 454
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CABP4   
Synonyms CRSD, CSNB2B
Description calcium binding protein 4
Transcript NM_145200   
Expression
Putative miRNA Targets on CABP4
3'UTR of CABP4
(miRNA target sites are highlighted)		 
>CABP4|NM_145200|3'UTR
   1 GGCTCCAGGAGGGAATATCTGTTGCCCCTGCGGCCCCAGACACCAGCCAGACCCAGGCTGCAGGCCTCCCCCAGGAGCCT
  81 CCAGGATGGAGATGGAGACCCAGCAGCCCCCAGACTACTTCTATCCCTGAAAACACCTGGCCTCAATGTTGGCTTGTTAT
 161 GTTACCTGCCCACCCTCATCCTTACCTCCTCCTACTCAAGCTGCCTGGAGAAGACCTGCTCTCAGCTGCCCACCGTTCCT
 241 CAGTGTGAGCAAGATTTGGGTCTCTCCAGACCTCTGGGAGGTAGGGAGTTCCCTGGCACTGGCAGCATTCAGTGGGGACC
 321 CCCCAGTGGCATGATGAATGGAGAGGATGGCTGGACCCCTTCCACTACTTATGTTTATAATTTTTTTTTTTTTTAATGAA
 401 CTTGAGCCGGGTGCAGTGGCTCACACCTGTAAGCCCAGCTGTCAGGGGGCAGAAGCGGGAGGATAGCTTGAGCCCAGGAG
 481 TGCAAGACCTGCCTGGGCAATATACTGAGACCCCATTCTCCACAAAAAGGAAAAATAAAAGACAAAAAAACAAACAAAAA
 561 ACCAAAAAACCCAAGTGTAAAAAAAGTGAGCTTGAAAGAAAGAAAGGGATGGCTCCATGTATCAAAGACAAAGAAATCAA
 641 AGCTGGGGTTGTAAGAGGGAGCTGACGCTGTGGGGGTTTCAGATCTGGATGGAGGCTTGGCCGCCTGGACTCCTACAACC
 721 ATGAGTGACAGAAGAACCATATGAGTCTGGGGAGCAAGAAACAAACCCCCCGGATATATTCCAGGGTCTCCAAAGGCTAA
 801 GATATTAATCTGTCTGCACTGACCAGTCATAGAAAGTGGCAAGGATACAGATGTTCAGGGCCCAGAGTGGAAACAGCTGC
 881 CCTAAAGAGCCTGGAACTCCAGGGCCTGCCCTTCAAGCAGGCGTGTAGTCTCTCTCCAGGGTGTGAAAAACTGGAAAAAA
 961 ACCCTGCCGCTCCCAAAGGGGAACTTGTGATAAAAATTACAGATTATTGGGCTGGGAGTGGTGGCTCACGCCTGTAATCC
1041 CAGCACTTTGGGAGGCTGAGGCGGGTGAATTACCTGAGGTCAGGAGTTTGAGGCCAGCCTGACCAACATGGTGAAACCCC
1121 ATCTCTACTAAAAATACAAAAATTAACTGGGCGAGGTAGCATGCACCTGTAATCTCAGCTACTCGGAGGTTGAGGCAGGA
1201 GAATCGCTTGAGCCCGGGAGGTGGAGCTGCAGTGAGCTGAGATCACACCATTGCACCCCAGCCTGAGCAACAGATCGAGA
1281 CTCCGTCTCAAAAACAAAACAAAAAAACCATACTGATTATAAAAGTAAAGAAACCACCATGAAGGAGACGAGACAGAGAC
1361 AAAAACAAGAGGACTGGCATCTCAGTGTACATAATACAGCCGCCTAAGAGACCACAAGATACATGCAAATAAAAGACGGC
1441 TAAAAGGGGAAGAGAGATCAACATGCAGTAACAGGATAGTATGAAGAGAGAACCGGAAGATTTAAAAAGTAACCCAACAG
1521 GCCAGGCGCATGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGGTTGCTTGAGCTCAGGAATTCGA
1601 GACCAGCCTGGGCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGCTTGCATCTG
1681 TGGTCCCAGGTATTCTACAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGGCAGAGGTTGCAGTGAGTCGAGATCGCA
1761 CCACTGCACTCCAGCGTGGGTAACAGAGTGAGAATCCGTCAAAAAGAAAAAAACAAACCATGGCTTCTGTTAAAAAAATA
1841 AAGTATATTTTATATATACACACACACACACACACACACACACAGCCATTGGAATGAAAAAATAATGGATAAGCTAAACA
1921 GCAGATTAAACACAATTTAAAGATTAATGAACTGGAAGCTATATCTAAGAAATCACTTATAATGTAACACTGAGAGACAA
2001 AAGGATGGAAAATATTACAGGGTAGTTAAAAGTCACTGGAAGGCTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTT
2081 TGGGAGGCTGAGACGGGCGGGTCACAGGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCATCTCTACTA
2161 AAAATACAAAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAAGAGAATG
2241 GCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCC
2321 GTCTCGGAAAAAAAAAAAAAAAAAGGTCACTGGAAGACTGGGTGTGGTGGCTTATGCCTGTAATCCCAGCATTTTGGGAG
2401 GCTAAGGCAGGAGGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTAACAGCAAGACCCTGCCTCTTAAAAAAAATAATA
2481 AAAAAATAAGCTGGGTGTAGTGGCTCATGCTTGTAGTTCCAGCTATTCAGGAGGCTGAGGTGAGAGGATCATTTGAGCCC
2561 AGGAGTTGGAGGCTGCAGTGATCGTGCCACTGCACTCCAGCCTTGGTGACAGAGCAAGAGACCCTGTCTCAAAGAAAAAG
2641 ACAGATAAGTCCTTGGGAGTCTCAGACGGAGGACATACATAGAGAATGAACAAGAAGCAATAACCAAAGAGATAATGGCT
2721 GAAAATTTTCCATAAAGACTTCCACAGACTTCAACTCCCCAGATTGAAGGAACAAACTGAAGTCAGAGTAGGGTAAATAA
2801 AAATAAATATATATCTGGATATATCCCATTGAAACCACAGAATATAAAAAGCAAATCTTATAAATAACTGGAGAGAAAAG
2881 TCAGATTCACGGTGTTCTGTCAAAGTGTTCATGTAGACTAAGGGTGGGGAAACTTTCTGTAAAGGGCTGGAGAATAATTA
2961 TTTTCAGCTTTGAGGCTTTGGTCTCTGTTGCAGCTGCTCACGCAACTCTGCTGTTGAAGTTTGTAGTGCAAAGTCAAGTC
3041 AACAAATGAGTGTGGCTATATCAGAAATTTTAATAAATAACAGTAAAACTTCATTTATTGACATGGAAATTTGAAAAAAA
3121 AAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccugAGAUGUCUGUGUGga 5'
              | |||| ||||||  
Target 5' tataTATACACACACACac 3'
 1851 - 1869 139.00 -10.80
2 
miRNA  3' ccUGAGAUGUCUGUGU-GGa 5'
            || | ||| ||||| || 
Target 5' acACAC-ACACACACAGCCa 3'
 1870 - 1888 124.00 -9.14
3 
miRNA  3' ccugaGAUGUCU-GUGUGGa 5'
               ||: ||| |||||| 
Target 5' gtgagCTG-AGATCACACCa 3'
 1232 - 1250 121.00 -11.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
305662 27 ClinVar
879587 63 ClinVar
305663 120 ClinVar
305664 121 ClinVar
305665 263 ClinVar
879938 296 ClinVar
305666 325 ClinVar
305667 381 ClinVar
879939 395 ClinVar
879940 409 ClinVar
305668 670 ClinVar
305669 682 ClinVar
305670 684 ClinVar
877142 703 ClinVar
305671 877 ClinVar
305672 964 ClinVar
305673 1041 ClinVar
877143 1064 ClinVar
305674 1118 ClinVar
877144 1159 ClinVar
878175 1191 ClinVar
305675 1224 ClinVar
305676 1286 ClinVar
305677 1292 ClinVar
305678 1391 ClinVar
878176 1393 ClinVar
878177 1403 ClinVar
878178 1414 ClinVar
305679 1436 ClinVar
879630 1511 ClinVar
305680 1528 ClinVar
879631 1637 ClinVar
879632 1663 ClinVar
305681 1698 ClinVar
879633 1759 ClinVar
305682 1807 ClinVar
305683 1828 ClinVar
305684 1851 ClinVar
305685 1851 ClinVar
305686 1854 ClinVar
305687 1856 ClinVar
305688 1856 ClinVar
305689 1856 ClinVar
305690 1858 ClinVar
305691 1858 ClinVar
305692 1858 ClinVar
305693 1858 ClinVar
305694 1858 ClinVar
305695 1858 ClinVar
305696 1858 ClinVar
305697 1858 ClinVar
305698 1860 ClinVar
305699 1860 ClinVar
879996 1874 ClinVar
305700 1878 ClinVar
305701 1934 ClinVar
305702 1940 ClinVar
879997 1958 ClinVar
879998 2001 ClinVar
879999 2005 ClinVar
877199 2062 ClinVar
305703 2066 ClinVar
305704 2090 ClinVar
305705 2099 ClinVar
305706 2168 ClinVar
877200 2187 ClinVar
305707 2188 ClinVar
305708 2196 ClinVar
305709 2313 ClinVar
305710 2326 ClinVar
305711 2328 ClinVar
305712 2332 ClinVar
878240 2358 ClinVar
305713 2439 ClinVar
305714 2584 ClinVar
305715 2669 ClinVar
305716 2680 ClinVar
305717 2710 ClinVar
878241 2717 ClinVar
879691 2837 ClinVar
879692 2861 ClinVar
879693 2887 ClinVar
879694 2897 ClinVar
879695 2906 ClinVar
879696 2959 ClinVar
305718 3044 ClinVar
COSN30144284 12 COSMIC
COSN30181513 14 COSMIC
COSN30468557 14 COSMIC
COSN31552930 20 COSMIC
COSN30191461 32 COSMIC
COSN26968906 33 COSMIC
COSN30127146 60 COSMIC
COSN30465366 85 COSMIC
COSN31488333 86 COSMIC
COSN31488570 92 COSMIC
COSN31543163 104 COSMIC
COSN30151751 110 COSMIC
COSN30190431 118 COSMIC
COSN507354 119 COSMIC
COSN31591465 210 COSMIC
COSN20508842 250 COSMIC
COSN5917089 478 COSMIC
COSN22828700 604 COSMIC
COSN26753350 689 COSMIC
COSN21789045 782 COSMIC
COSN15082637 857 COSMIC
COSN15122750 858 COSMIC
COSN27609208 962 COSMIC
COSN24428689 1296 COSMIC
COSN22739937 1361 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs569872151 5 dbSNP
rs898778158 5 dbSNP
rs748195294 6 dbSNP
rs749036787 7 dbSNP
rs931592206 10 dbSNP
rs758583912 13 dbSNP
rs777890480 20 dbSNP
rs887134726 26 dbSNP
rs747352890 27 dbSNP
rs1008239273 30 dbSNP
rs771250959 31 dbSNP
rs529589052 32 dbSNP
rs1019686545 33 dbSNP
rs1286938410 36 dbSNP
rs548141133 38 dbSNP
rs202212392 40 dbSNP
rs560082251 44 dbSNP
rs773852144 47 dbSNP
rs1440317899 49 dbSNP
rs899658098 63 dbSNP
rs1481119889 73 dbSNP
rs1207224203 81 dbSNP
rs1200358058 90 dbSNP
rs1456293091 93 dbSNP
rs996674799 119 dbSNP
rs1790736 120 dbSNP
rs372107215 121 dbSNP
rs1313826199 122 dbSNP
rs1032080797 129 dbSNP
rs570414838 148 dbSNP
rs1373661841 150 dbSNP
rs1332932149 152 dbSNP
rs1444061611 158 dbSNP
rs1400027868 161 dbSNP
rs1337734059 162 dbSNP
rs760779526 166 dbSNP
rs977366671 168 dbSNP
rs769163963 169 dbSNP
rs1021210075 171 dbSNP
rs1419723853 175 dbSNP
rs1265404246 176 dbSNP
rs537566910 186 dbSNP
rs1177038816 187 dbSNP
rs1439247033 189 dbSNP
rs1237358902 193 dbSNP
rs970600317 195 dbSNP
rs549538705 196 dbSNP
rs1031729385 207 dbSNP
rs1254144706 222 dbSNP
rs1198018314 226 dbSNP
rs1378144279 231 dbSNP
rs567943756 235 dbSNP
rs1317016447 236 dbSNP
rs1310722336 251 dbSNP
rs886048562 263 dbSNP
rs1375674961 270 dbSNP
rs772851120 282 dbSNP
rs1316250466 287 dbSNP
rs959705498 292 dbSNP
rs181113902 296 dbSNP
rs769973044 297 dbSNP
rs1400752403 298 dbSNP
rs1302798525 300 dbSNP
rs1454725603 308 dbSNP
rs992562538 313 dbSNP
rs1156868188 314 dbSNP
rs1419392913 314 dbSNP
rs1184017178 319 dbSNP
rs926587486 319 dbSNP
rs886048563 325 dbSNP
rs1253764465 331 dbSNP
rs143907498 348 dbSNP
rs973429498 357 dbSNP
rs948197685 367 dbSNP
rs1322174679 369 dbSNP
rs553822363 369 dbSNP
rs1169445927 381 dbSNP
rs1216209571 381 dbSNP
rs3835327 381 dbSNP
rs397744121 381 dbSNP
rs920111245 381 dbSNP
rs1312372561 387 dbSNP
rs931535237 388 dbSNP
rs1385748058 393 dbSNP
rs1047325440 395 dbSNP
rs1333400343 407 dbSNP
rs376738871 409 dbSNP
rs775755989 410 dbSNP
rs572401751 412 dbSNP
rs890625688 414 dbSNP
rs1366507080 416 dbSNP
rs944938776 419 dbSNP
rs1226929496 423 dbSNP
rs1265204938 425 dbSNP
rs148612796 428 dbSNP
rs1487688393 435 dbSNP
rs765865925 446 dbSNP
rs944066488 447 dbSNP
rs1353751299 449 dbSNP
rs1265284766 452 dbSNP
rs900793504 457 dbSNP
rs1320673422 458 dbSNP
rs1230417616 462 dbSNP
rs1276836025 465 dbSNP
rs1263920697 466 dbSNP
rs1041108595 468 dbSNP
rs368995514 474 dbSNP
rs1325537662 476 dbSNP
rs141182457 490 dbSNP
rs996462572 495 dbSNP
rs899960922 500 dbSNP
rs1292765443 511 dbSNP
rs1465923688 521 dbSNP
rs1210510864 530 dbSNP
rs866365965 531 dbSNP
rs1168484516 537 dbSNP
rs185956229 537 dbSNP
rs1032463264 544 dbSNP
rs1477416311 544 dbSNP
rs1200357135 548 dbSNP
rs1266194749 551 dbSNP
rs1449582587 551 dbSNP
rs879146930 554 dbSNP
rs1196796157 556 dbSNP
rs893518473 557 dbSNP
rs1256520001 558 dbSNP
rs1218573934 562 dbSNP
rs996894148 563 dbSNP
rs1021837690 564 dbSNP
rs1179715377 565 dbSNP
rs576577876 570 dbSNP
rs1231117103 579 dbSNP
rs1330789985 594 dbSNP
rs970566236 598 dbSNP
rs1449224731 607 dbSNP
rs981965286 610 dbSNP
rs1328974267 611 dbSNP
rs1472810116 616 dbSNP
rs999148826 619 dbSNP
rs1173862726 622 dbSNP
rs1031614278 630 dbSNP
rs1376528703 630 dbSNP
rs1178903154 632 dbSNP
rs973423917 634 dbSNP
rs763174697 636 dbSNP
rs1198400996 638 dbSNP
rs1366358298 642 dbSNP
rs1281319124 645 dbSNP
rs1199193274 652 dbSNP
rs1344436403 653 dbSNP
rs1280142798 663 dbSNP
rs1242603700 665 dbSNP
rs1374936119 667 dbSNP
rs886048564 670 dbSNP
rs992529853 676 dbSNP
rs920592912 678 dbSNP
rs543961015 682 dbSNP
rs146218513 684 dbSNP
rs1307992452 686 dbSNP
rs973196092 696 dbSNP
rs1412075901 700 dbSNP
rs1158667047 702 dbSNP
rs574323434 703 dbSNP
rs931528297 704 dbSNP
rs1178477526 708 dbSNP
rs1039213424 717 dbSNP
rs1239512128 721 dbSNP
rs1321414689 726 dbSNP
rs1186090062 730 dbSNP
rs900760872 742 dbSNP
rs1218845768 743 dbSNP
rs983421024 749 dbSNP
rs1261423516 758 dbSNP
rs1351864401 762 dbSNP
rs1285561785 763 dbSNP
rs1245588393 766 dbSNP
rs908838478 766 dbSNP
rs944033759 769 dbSNP
rs1445758993 771 dbSNP
rs768551163 772 dbSNP
rs1298352851 797 dbSNP
rs1401299151 802 dbSNP
rs1053423532 805 dbSNP
rs541706301 806 dbSNP
rs1157682690 808 dbSNP
rs1405554073 824 dbSNP
rs932714164 827 dbSNP
rs1009294284 836 dbSNP
rs1021105232 838 dbSNP
rs1251006534 841 dbSNP
rs1483222420 844 dbSNP
rs1161804290 847 dbSNP
rs79733334 849 dbSNP
rs1178799409 861 dbSNP
rs189731301 867 dbSNP
rs1253627122 871 dbSNP
rs1422928664 874 dbSNP
rs1196008973 876 dbSNP
rs11601325 877 dbSNP
rs1262478665 885 dbSNP
rs1386517161 890 dbSNP
rs577168001 895 dbSNP
rs144432491 898 dbSNP
rs1291816209 910 dbSNP
rs1053440744 915 dbSNP
rs895704948 918 dbSNP
rs543364807 923 dbSNP
rs1463844366 931 dbSNP
rs1301512786 932 dbSNP
rs1014185430 943 dbSNP
rs1022616472 944 dbSNP
rs1296989290 954 dbSNP
rs1436816148 955 dbSNP
rs985262502 962 dbSNP
rs76060170 964 dbSNP
rs531286246 965 dbSNP
rs1363053011 968 dbSNP
rs952991190 969 dbSNP
rs183419313 970 dbSNP
rs908722536 973 dbSNP
rs1489609850 978 dbSNP
rs1273822665 997 dbSNP
rs567905142 1006 dbSNP
rs1245192307 1012 dbSNP
rs1342856446 1013 dbSNP
rs965561444 1014 dbSNP
rs1258425824 1016 dbSNP
rs1200480939 1027 dbSNP
rs976989097 1030 dbSNP
rs1254067643 1031 dbSNP
rs911970986 1039 dbSNP
rs921234184 1040 dbSNP
rs186530202 1041 dbSNP
rs1272730821 1061 dbSNP
rs1043515263 1063 dbSNP
rs191030743 1064 dbSNP
rs911158058 1067 dbSNP
rs926096677 1081 dbSNP
rs922113011 1086 dbSNP
rs1400164098 1087 dbSNP
rs934751519 1091 dbSNP
rs1447054521 1104 dbSNP
rs1187454980 1110 dbSNP
rs565802060 1118 dbSNP
rs1430853408 1119 dbSNP
rs913507993 1127 dbSNP
rs750151193 1153 dbSNP
rs1238615561 1154 dbSNP
rs539741322 1159 dbSNP
rs1042087608 1171 dbSNP
rs1466889586 1184 dbSNP
rs1250677612 1185 dbSNP
rs183186439 1186 dbSNP
rs906278630 1187 dbSNP
rs1014152940 1189 dbSNP
rs1044363688 1190 dbSNP
rs7127024 1191 dbSNP
rs760609909 1202 dbSNP
rs1377151198 1203 dbSNP
rs537531908 1207 dbSNP
rs1434446461 1211 dbSNP
rs994551641 1212 dbSNP
rs766112266 1213 dbSNP
rs1303943645 1216 dbSNP
rs753487920 1217 dbSNP
rs1362535365 1218 dbSNP
rs754686225 1219 dbSNP
rs555941085 1224 dbSNP
rs994738513 1230 dbSNP
rs1382399898 1236 dbSNP
rs574182345 1238 dbSNP
rs1361901348 1240 dbSNP
rs11605548 1248 dbSNP
rs11601405 1254 dbSNP
rs1180338773 1258 dbSNP
rs1437608423 1266 dbSNP
rs965531117 1277 dbSNP
rs976957802 1278 dbSNP
rs373857371 1286 dbSNP
rs146149609 1292 dbSNP
rs1463310384 1296 dbSNP
rs1207523241 1301 dbSNP
rs1237427088 1304 dbSNP
rs553549818 1309 dbSNP
rs1018904896 1310 dbSNP
rs966067375 1313 dbSNP
rs974811513 1314 dbSNP
rs1189929826 1315 dbSNP
rs188509571 1319 dbSNP
rs922081352 1325 dbSNP
rs1419285044 1330 dbSNP
rs1425090335 1338 dbSNP
rs957752708 1341 dbSNP
rs978816890 1348 dbSNP
rs1434117353 1350 dbSNP
rs990362258 1351 dbSNP
rs1186670819 1359 dbSNP
rs1488336454 1361 dbSNP
rs913466747 1367 dbSNP
rs140203885 1373 dbSNP
rs1410005977 1378 dbSNP
rs925951731 1386 dbSNP
rs564944745 1391 dbSNP
rs77807407 1393 dbSNP
rs917076132 1400 dbSNP
rs1247440749 1402 dbSNP
rs949888937 1403 dbSNP
rs1320502483 1405 dbSNP
rs1044334296 1409 dbSNP
rs1291641601 1411 dbSNP
rs563724143 1414 dbSNP
rs781743235 1419 dbSNP
rs930563507 1420 dbSNP
rs547381974 1424 dbSNP
rs1048683968 1425 dbSNP
rs75914794 1436 dbSNP
rs1391680651 1438 dbSNP
rs1326861151 1449 dbSNP
rs543111733 1452 dbSNP
rs1004606330 1456 dbSNP
rs1415314102 1460 dbSNP
rs1227347630 1464 dbSNP
rs1268388559 1465 dbSNP
rs1478080721 1472 dbSNP
rs1448156154 1476 dbSNP
rs995072854 1477 dbSNP
rs1018678633 1481 dbSNP
rs1048928134 1483 dbSNP
rs1487711974 1491 dbSNP
rs1272900202 1494 dbSNP
rs1320593584 1495 dbSNP
rs561400843 1495 dbSNP
rs528993456 1496 dbSNP
rs1226775997 1500 dbSNP
rs1331954508 1506 dbSNP
rs1303691994 1511 dbSNP
rs547246461 1528 dbSNP
rs192714120 1538 dbSNP
rs1392054802 1541 dbSNP
rs1028521441 1546 dbSNP
rs1202002260 1556 dbSNP
rs1466116876 1575 dbSNP
rs533060454 1582 dbSNP
rs551692608 1589 dbSNP
rs1402368372 1590 dbSNP
rs570061594 1596 dbSNP
rs1165710954 1600 dbSNP
rs1018872418 1609 dbSNP
rs901871197 1612 dbSNP
rs1200587854 1629 dbSNP
rs1452131430 1630 dbSNP
rs954284054 1631 dbSNP
rs532435181 1637 dbSNP
rs555805758 1639 dbSNP
rs1459528696 1646 dbSNP
rs377617797 1647 dbSNP
rs1029020292 1652 dbSNP
rs957510022 1662 dbSNP
rs1257789507 1663 dbSNP
rs990721423 1666 dbSNP
rs567725957 1672 dbSNP
rs1472480583 1675 dbSNP
rs535143410 1676 dbSNP
rs1020454456 1677 dbSNP
rs1447231185 1681 dbSNP
rs956265114 1690 dbSNP
rs1378761960 1691 dbSNP
rs2514262 1698 dbSNP
rs183159788 1702 dbSNP
rs1409259629 1703 dbSNP
rs1402325314 1708 dbSNP
rs917378975 1710 dbSNP
rs1173796708 1718 dbSNP
rs1403670438 1720 dbSNP
rs949856463 1732 dbSNP
rs1164235903 1737 dbSNP
rs979898895 1741 dbSNP
rs927121590 1742 dbSNP
rs1181751121 1752 dbSNP
rs545370587 1759 dbSNP
rs1443480627 1774 dbSNP
rs930553882 1776 dbSNP
rs369603394 1777 dbSNP
rs1198800930 1779 dbSNP
rs1347504852 1782 dbSNP
rs938979619 1798 dbSNP
rs557279173 1799 dbSNP
rs1355627093 1806 dbSNP
rs200446327 1807 dbSNP
rs886048565 1807 dbSNP
rs916315686 1807 dbSNP
rs1279767073 1808 dbSNP
rs1335694869 1815 dbSNP
rs1049338014 1825 dbSNP
rs886048566 1828 dbSNP
rs1298434877 1835 dbSNP
rs80147679 1836 dbSNP
rs187653511 1837 dbSNP
rs75578020 1844 dbSNP
rs1352471286 1846 dbSNP
rs76463793 1848 dbSNP
rs77451107 1849 dbSNP
rs61889863 1851 dbSNP
rs748450531 1851 dbSNP
rs940589922 1851 dbSNP
rs1370691300 1854 dbSNP
rs759157298 1854 dbSNP
rs886048567 1854 dbSNP
rs1040250624 1856 dbSNP
rs533020503 1856 dbSNP
rs542972940 1856 dbSNP
rs886048568 1856 dbSNP
rs886048569 1857 dbSNP
rs11227798 1858 dbSNP
rs1215804303 1858 dbSNP
rs1269233722 1858 dbSNP
rs1359182878 1858 dbSNP
rs1436702780 1858 dbSNP
rs147580597 1858 dbSNP
rs1491046777 1858 dbSNP
rs373880828 1858 dbSNP
rs397749289 1858 dbSNP
rs886048570 1858 dbSNP
rs35146220 1859 dbSNP
rs886048571 1859 dbSNP
rs1324275484 1860 dbSNP
rs7936733 1860 dbSNP
rs901795950 1862 dbSNP
rs867214951 1874 dbSNP
rs1408286004 1875 dbSNP
rs1359572577 1877 dbSNP
rs886048572 1878 dbSNP
rs1028469561 1884 dbSNP
rs1225305183 1884 dbSNP
rs1273120095 1887 dbSNP
rs1479099319 1888 dbSNP
rs1482894425 1890 dbSNP
rs1183435195 1897 dbSNP
rs889967000 1898 dbSNP
rs1191513591 1912 dbSNP
rs1000441051 1919 dbSNP
rs1234800969 1923 dbSNP
rs1033705447 1927 dbSNP
rs886048573 1934 dbSNP
rs886048574 1940 dbSNP
rs548811817 1943 dbSNP
rs1181533164 1958 dbSNP
rs774271313 1960 dbSNP
rs748296888 1970 dbSNP
rs1271621959 1973 dbSNP
rs971432483 1981 dbSNP
rs1372681972 1982 dbSNP
rs980200763 1985 dbSNP
rs927120262 2001 dbSNP
rs570209950 2005 dbSNP
rs984706658 2013 dbSNP
rs907820710 2019 dbSNP
rs1020840434 2025 dbSNP
rs1428856335 2026 dbSNP
rs541154026 2031 dbSNP
rs1337131032 2044 dbSNP
rs1393491323 2045 dbSNP
rs981628410 2046 dbSNP
rs1039980270 2052 dbSNP
rs1445303897 2055 dbSNP
rs1178903617 2056 dbSNP
rs922941577 2060 dbSNP
rs1382811119 2062 dbSNP
rs1210199603 2063 dbSNP
rs1349673396 2064 dbSNP
rs886048575 2066 dbSNP
rs1247536474 2072 dbSNP
rs771896989 2078 dbSNP
rs1273099034 2079 dbSNP
rs1354902028 2079 dbSNP
rs886048576 2090 dbSNP
rs1196720324 2091 dbSNP
rs1275595520 2093 dbSNP
rs1373246715 2094 dbSNP
rs1441074258 2095 dbSNP
rs780002066 2096 dbSNP
rs886048577 2099 dbSNP
rs990449428 2100 dbSNP
rs916258667 2105 dbSNP
rs1453683057 2108 dbSNP
rs930360560 2109 dbSNP
rs749055593 2120 dbSNP
rs984575860 2121 dbSNP
rs1407143690 2134 dbSNP
rs907642129 2136 dbSNP
rs1000811992 2140 dbSNP
rs1054707443 2141 dbSNP
rs1486369135 2156 dbSNP
rs1186822812 2166 dbSNP
rs1040218186 2168 dbSNP
rs754783722 2168 dbSNP
rs886048578 2168 dbSNP
rs1488398608 2170 dbSNP
rs1262905778 2174 dbSNP
rs892018374 2175 dbSNP
rs541691229 2177 dbSNP
rs1168457171 2179 dbSNP
rs191420904 2187 dbSNP
rs886048579 2188 dbSNP
rs1412559915 2190 dbSNP
rs1292727722 2191 dbSNP
rs1001605836 2195 dbSNP
rs11822066 2196 dbSNP
rs778619168 2199 dbSNP
rs1290471863 2200 dbSNP
rs1406447390 2209 dbSNP
rs554195108 2218 dbSNP
rs1451375551 2238 dbSNP
rs1344315313 2241 dbSNP
rs1165430829 2243 dbSNP
rs985062656 2251 dbSNP
rs1415083068 2253 dbSNP
rs1186562976 2258 dbSNP
rs563532066 2259 dbSNP
rs907705779 2271 dbSNP
rs1202935272 2272 dbSNP
rs374288210 2275 dbSNP
rs975986914 2276 dbSNP
rs370262108 2281 dbSNP
rs1272699455 2283 dbSNP
rs1219309391 2284 dbSNP
rs1328213603 2288 dbSNP
rs1293706832 2291 dbSNP
rs1381822489 2308 dbSNP
rs1228736861 2309 dbSNP
rs1361035191 2309 dbSNP
rs1272448228 2310 dbSNP
rs1462983181 2313 dbSNP
rs886048580 2313 dbSNP
rs1343234970 2314 dbSNP
rs1462057369 2321 dbSNP
rs567682286 2322 dbSNP
rs1003041156 2326 dbSNP
rs1195892641 2326 dbSNP
rs1374258116 2326 dbSNP
rs1487751927 2326 dbSNP
rs796540356 2326 dbSNP
rs1491234059 2327 dbSNP
rs867071753 2327 dbSNP
rs11227799 2328 dbSNP
rs1491392197 2328 dbSNP
rs766971670 2328 dbSNP
rs1219080503 2329 dbSNP
rs886048581 2332 dbSNP
rs1263977322 2333 dbSNP
rs1303963183 2334 dbSNP
rs1035864868 2337 dbSNP
rs958912566 2341 dbSNP
rs1325178955 2343 dbSNP
rs1391851477 2345 dbSNP
rs1210696601 2346 dbSNP
rs1398071677 2347 dbSNP
rs1206871042 2348 dbSNP
rs1247451957 2349 dbSNP
rs1013189959 2353 dbSNP
rs1461232183 2358 dbSNP
rs1395297508 2359 dbSNP
rs1175063787 2363 dbSNP
rs1053498892 2364 dbSNP
rs1023698554 2367 dbSNP
rs893530593 2369 dbSNP
rs747686059 2371 dbSNP
rs1440034299 2387 dbSNP
rs1447676585 2387 dbSNP
rs1248557262 2390 dbSNP
rs951728995 2407 dbSNP
rs1193736891 2412 dbSNP
rs1483733391 2421 dbSNP
rs1282749332 2425 dbSNP
rs1232322091 2428 dbSNP
rs1345500780 2430 dbSNP
rs1374728652 2432 dbSNP
rs886048582 2439 dbSNP
rs537752551 2441 dbSNP
rs931674596 2452 dbSNP
rs1326350722 2468 dbSNP
rs1390325139 2468 dbSNP
rs907608927 2468 dbSNP
rs1429521984 2477 dbSNP
rs1050182062 2496 dbSNP
rs1314362930 2515 dbSNP
rs1432427661 2519 dbSNP
rs925058745 2521 dbSNP
rs1159474773 2526 dbSNP
rs547113573 2529 dbSNP
rs975849365 2530 dbSNP
rs923115136 2540 dbSNP
rs1475596660 2547 dbSNP
rs1318162068 2550 dbSNP
rs1259651976 2551 dbSNP
rs1387207312 2554 dbSNP
rs773336845 2559 dbSNP
rs1320849488 2560 dbSNP
rs1279432302 2562 dbSNP
rs1205493704 2567 dbSNP
rs1054992934 2569 dbSNP
rs1352506878 2577 dbSNP
rs1329920826 2582 dbSNP
rs886048583 2584 dbSNP
rs760698045 2585 dbSNP
rs1238189159 2592 dbSNP
rs1232962361 2598 dbSNP
rs1010462766 2607 dbSNP
rs1284374240 2615 dbSNP
rs1355562307 2619 dbSNP
rs1294565226 2631 dbSNP
rs1412584881 2643 dbSNP
rs1050380137 2646 dbSNP
rs571746418 2651 dbSNP
rs1226748829 2657 dbSNP
rs1402819007 2662 dbSNP
rs1383210811 2663 dbSNP
rs183547972 2666 dbSNP
rs1046041244 2668 dbSNP
rs116414393 2669 dbSNP
rs1475038286 2670 dbSNP
rs1381574407 2672 dbSNP
rs1242931128 2679 dbSNP
rs77828276 2680 dbSNP
rs1034429151 2684 dbSNP
rs903231017 2685 dbSNP
rs952190790 2705 dbSNP
rs1439820677 2707 dbSNP
rs189502443 2710 dbSNP
rs192454438 2717 dbSNP
rs1230907597 2727 dbSNP
rs1481306448 2733 dbSNP
rs1270442778 2745 dbSNP
rs1432397408 2750 dbSNP
rs1325100562 2754 dbSNP
rs185206750 2755 dbSNP
rs894665204 2758 dbSNP
rs961883626 2765 dbSNP
rs1397313319 2771 dbSNP
rs1013525837 2774 dbSNP
rs776602987 2776 dbSNP
rs1027226198 2794 dbSNP
rs1453843793 2801 dbSNP
rs540764381 2812 dbSNP
rs571282792 2827 dbSNP
rs975955850 2830 dbSNP
rs145684543 2837 dbSNP
rs1474534667 2839 dbSNP
rs148932555 2861 dbSNP
rs757176022 2862 dbSNP
rs538665266 2869 dbSNP
rs1386666906 2874 dbSNP
rs1468904373 2875 dbSNP
rs1014545078 2881 dbSNP
rs553567809 2882 dbSNP
rs1320618848 2884 dbSNP
rs764991694 2891 dbSNP
rs924976421 2892 dbSNP
rs961735812 2893 dbSNP
rs545186050 2909 dbSNP
rs563492120 2911 dbSNP
rs1336635971 2913 dbSNP
rs923082417 2915 dbSNP
rs1324503579 2930 dbSNP
rs530806797 2946 dbSNP
rs1440747563 2950 dbSNP
rs953194589 2952 dbSNP
rs936395339 2959 dbSNP
rs549335985 2961 dbSNP
rs190045472 2965 dbSNP
rs1408497704 2980 dbSNP
rs752119317 2986 dbSNP
rs757994378 2993 dbSNP
rs528535037 3002 dbSNP
rs1396609792 3003 dbSNP
rs1191723902 3005 dbSNP
rs546681598 3017 dbSNP
rs1241241180 3023 dbSNP
rs1233020808 3026 dbSNP
rs946221027 3027 dbSNP
rs1263794917 3030 dbSNP
rs571674945 3044 dbSNP
rs1221585424 3056 dbSNP
rs907485637 3059 dbSNP
rs1234523721 3062 dbSNP
rs947296179 3065 dbSNP
rs1219196506 3072 dbSNP
rs1301671759 3072 dbSNP
rs1374680508 3080 dbSNP
rs1041687054 3084 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ccugagaugucuGUGUGGa 5'
                      |||||| 
Target 5' ----------auCACACCa 3'
 		1 - 9
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000438189.2 | 3UTR | AUCACACCAUUGCACCCCAGCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
121 hsa-miR-3650 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075340 SF3B3 splicing factor 3b subunit 3 2 2
MIRT302326 ACP1 acid phosphatase 1, soluble 2 2
MIRT395212 PRKCB protein kinase C beta 2 2
MIRT404446 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT449647 CASS4 Cas scaffolding protein family member 4 2 2
MIRT451262 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452113 IFITM1 interferon induced transmembrane protein 1 2 2
MIRT452723 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 4
MIRT452982 CABP4 calcium binding protein 4 2 2
MIRT453966 ATP13A4 ATPase 13A4 2 6
MIRT454112 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT454343 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454405 AKAP5 A-kinase anchoring protein 5 2 2
MIRT456224 LIX1L limb and CNS expressed 1 like 2 4
MIRT456232 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 6
MIRT458505 GSG2 histone H3 associated protein kinase 2 6
MIRT461653 G6PC glucose-6-phosphatase catalytic subunit 2 2
MIRT461933 TNFSF14 TNF superfamily member 14 2 2
MIRT462734 EFNB1 ephrin B1 2 2
MIRT463817 XKR4 XK related 4 2 2
MIRT463833 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT464928 TXLNA taxilin alpha 2 2
MIRT465874 TMEM43 transmembrane protein 43 2 4
MIRT467753 SLC35F1 solute carrier family 35 member F1 2 4
MIRT468688 SEC22C SEC22 homolog C, vesicle trafficking protein 2 4
MIRT469453 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT471931 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT474715 KIF13A kinesin family member 13A 2 6
MIRT475396 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT475681 HHIPL1 HHIP like 1 2 2
MIRT477016 FAM217B family with sequence similarity 217 member B 2 2
MIRT477073 FAM208A family with sequence similarity 208 member A 2 4
MIRT478172 DENND5B DENN domain containing 5B 2 2
MIRT478995 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479700 CCNT1 cyclin T1 2 2
MIRT482784 STIM1 stromal interaction molecule 1 2 2
MIRT488682 RAD23B RAD23 homolog B, nucleotide excision repair protein 2 2
MIRT493179 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT494243 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT508775 GSG1 germ cell associated 1 2 2
MIRT509555 ACTG1 actin gamma 1 2 4
MIRT510305 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510976 PFN2 profilin 2 2 6
MIRT517860 NCAPD2 non-SMC condensin I complex subunit D2 2 4
MIRT519451 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT521340 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT522478 MIPOL1 mirror-image polydactyly 1 2 4
MIRT522584 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT525629 NUP93 nucleoporin 93 2 4
MIRT529240 PORCN porcupine O-acyltransferase 2 2
MIRT529788 AP4S1 adaptor related protein complex 4 sigma 1 subunit 2 2
MIRT530567 ABHD15 abhydrolase domain containing 15 2 2
MIRT535784 MTRNR2L11 MT-RNR2-like 11 2 6
MIRT536819 HMGA1 high mobility group AT-hook 1 2 2
MIRT541615 C11orf31 selenoprotein H 2 2
MIRT546188 TPD52 tumor protein D52 2 4
MIRT546201 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT547466 MBNL3 muscleblind like splicing regulator 3 2 8
MIRT550570 SLC2A5 solute carrier family 2 member 5 2 2
MIRT550778 DBT dihydrolipoamide branched chain transacylase E2 2 4
MIRT550987 RBM38 RNA binding motif protein 38 2 2
MIRT554735 RHOC ras homolog family member C 2 2
MIRT555390 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556871 IVNS1ABP influenza virus NS1A binding protein 2 2
MIRT557530 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT564850 ZBED3 zinc finger BED-type containing 3 2 2
MIRT569426 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569479 CTSE cathepsin E 2 2
MIRT569653 SLC23A1 solute carrier family 23 member 1 2 2
MIRT570089 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 4
MIRT574074 RNF152 ring finger protein 152 2 2
MIRT575199 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT606929 CDK15 cyclin dependent kinase 15 2 2
MIRT606959 BDH1 3-hydroxybutyrate dehydrogenase 1 2 6
MIRT606968 FAM117B family with sequence similarity 117 member B 2 2
MIRT606975 ONECUT3 one cut homeobox 3 2 2
MIRT607002 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT607129 MARCH4 membrane associated ring-CH-type finger 4 2 2
MIRT607185 SPRY4 sprouty RTK signaling antagonist 4 2 4
MIRT607547 GLI2 GLI family zinc finger 2 2 2
MIRT607617 TMEM130 transmembrane protein 130 2 4
MIRT607638 FAM69C family with sequence similarity 69 member C 2 2
MIRT607690 MAPK10 mitogen-activated protein kinase 10 2 2
MIRT607810 SPATA6 spermatogenesis associated 6 2 2
MIRT607945 SSX2 SSX family member 2 2 4
MIRT608018 CARNS1 carnosine synthase 1 2 2
MIRT608066 SSX2B SSX family member 2B 2 4
MIRT608833 PTCHD1 patched domain containing 1 2 4
MIRT608857 TCTE1 t-complex-associated-testis-expressed 1 2 2
MIRT608863 BCAS1 breast carcinoma amplified sequence 1 2 2
MIRT608871 NR2E1 nuclear receptor subfamily 2 group E member 1 2 2
MIRT608949 CYP7B1 cytochrome P450 family 7 subfamily B member 1 2 2
MIRT608994 PYGO1 pygopus family PHD finger 1 2 2
MIRT609060 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT609066 IGLON5 IgLON family member 5 2 4
MIRT610789 KLK2 kallikrein related peptidase 2 2 2
MIRT620567 WBSCR27 methyltransferase like 27 2 4
MIRT624028 EN2 engrailed homeobox 2 2 2
MIRT626738 TXNL4B thioredoxin like 4B 2 2
MIRT627162 ZNF48 zinc finger protein 48 2 2
MIRT627198 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT631188 TSPAN14 tetraspanin 14 2 2
MIRT631967 YIPF5 Yip1 domain family member 5 2 2
MIRT632888 GINM1 glycoprotein integral membrane 1 2 2
MIRT636752 SLC16A5 solute carrier family 16 member 5 2 2
MIRT637769 PDLIM3 PDZ and LIM domain 3 2 2
MIRT640735 FAM83C family with sequence similarity 83 member C 2 2
MIRT645611 TSPAN6 tetraspanin 6 2 2
MIRT653679 SLC25A36 solute carrier family 25 member 36 2 2
MIRT654119 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT655110 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT662230 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662332 MYLK3 myosin light chain kinase 3 2 2
MIRT662730 LRRC3C leucine rich repeat containing 3C 2 2
MIRT668622 EEA1 early endosome antigen 1 2 2
MIRT687702 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT691171 APOL6 apolipoprotein L6 2 2
MIRT701450 NFIC nuclear factor I C 2 2
MIRT705501 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT706893 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT707402 KCNK12 potassium two pore domain channel subfamily K member 12 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3650 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3650 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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