miRTarBase - #MIRT453490


—
pre-miRNA Information
pre-miRNA hsa-mir-4739   
Genomic Coordinates chr17: 79707176 - 79707249
Description Homo sapiens miR-4739 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4739
Sequence 10| AAGGGAGGAGGAGCGGAGGGGCCCU |34
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1416844919 3 dbSNP
rs1313792237 5 dbSNP
rs1350222948 10 dbSNP
rs1440530436 13 dbSNP
rs73410309 14 dbSNP
rs1223789593 15 dbSNP
rs1279007964 18 dbSNP
rs1345189697 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PITPNM3   
Synonyms ACKR6, CORD5, NIR1, RDGBA3
Description PITPNM family member 3
Transcript NM_001165966   
Other Transcripts NM_031220   
Expression
Putative miRNA Targets on PITPNM3
3'UTR of PITPNM3
(miRNA target sites are highlighted)		 
>PITPNM3|NM_001165966|3'UTR
   1 GGGGTGGGCTGTGCTCAGAGCAGGGAGCGGGGGGCCCAATCAGGCTGCCTGCGGGGACGGGAGGGGGCTGCCCTCTCCCC
  81 GACACAGGCGTTTTCCTGCTTTTTCCCTCCCGTGTCTGTCCAGCAGTGTCCGACCAGAGCGGGGAGGGATCCTGCCCGAG
 161 CCCGGGGGGCTCCCTGAGCTGCGACGGGGTGAGGTCCGGGGATCTCGGTGCAGCCACTGCTGCCTCCCACGGGCCTGCGA
 241 CCGCAAGCCCAAGTCAGGGTTCATGTTTGTGTCATCCTGGGGGCAGGCTTGCCCGGGGCTGAAGCGTTTGGGCAAAGTCG
 321 ACCACCCTCCTGCGTCCCCAGGCTTCACAGCGAGCTAGGCAGGCCCTCAAGGGGGCAGCCCCAGCCTCGGCACCAAGCGC
 401 CGCTGGCAGGCACAGCCTCTGGGCTGTCTTGTGGAGGTGTGAGTGGCATTTGTGCCCGCCCTTCCTGTGGTTTGGGTCAC
 481 CATTTTGGGGTTGGCGCTCTTATGGCAAGATGGCCACTTTCTGGGAGTGAGAGCACATCCCCGGGCTCATGTTACGCCGT
 561 CTCTGTCCACAGCCCTCGGGGGTGGGGTCTGGTGCTGACGGTCTGTCCTGCAGCTGTCCATTGTCCCCAACCCCCGTTGT
 641 CCTCAGTGTCCTCACCATTTCCCTGTGGCCCTGGAGGCCAGGGCTTCCTCTTCCCGGAGCCCTGCCTCATGCCCTCCCTT
 721 GGGAGGCTGCAGCCTTGGGCTCTGGCTCAGCTGGGCTGGCTGTGAGCCCCTGAGCTGGTTGCTTGCCCTCTCTGGGCTCC
 801 GTCTTCCTTCTGTTATTGGAGGGGTCCCCCTAGCTGAGATTGGTGTGAGTCTTTGACTCCCAAGATGTCCTGCAGTTTGG
 881 CCCATTGAGGCTCTTCAGGCCTAAGGGTCCCTCCGAGTGTCCTGTGACCCACACCTTTCACACAGCCTGGGAGAGGGGGT
 961 CTGGGTGGGCTGGAAAGGAGGGGCTCTTAAAGGAGCCTCTCTGGGTGGGCTGGGAAGGGATCCCTACTCCACGGAGAGGT
1041 GCAGCTGGTTTGCCTTGCACTGCGTGTCCCAGGGACAACCCACTCAAACTGGGTGTCCTAGGGACAACCCACCTCCCTCT
1121 CCTGCCAAAAGGTTACTGATTGGGCTCCCCATAACCCCAGCTCTGCCAGGACCCTTTTATCCTTTTTGGCTCCCAGAGGC
1201 ATAGAGCTGAGATTCCAGGGTTCTAGGGGTTCCTGGAAGTTTGGCTCCAACTGTTGTATTCTCTTCCCTTTCCCCTGCTG
1281 CTCAGTTTGTGCCCATAACCTCCTCCTGGGTAGTCCCCTGAGGTTGGCAGGACTTGGCCCTTCTGGGGCCCCTAAAGCCT
1361 GCTCAGGCCCTCCTGCTGCTGAACCTTGGCCTGGGCACTGCTTTCCTGCATCCTGGAAAACCCCGACTCCCTGGCCCAGG
1441 CCCACACCTGCTGTGTGGGGCTGCCCACGTGGCCACTGAGCCCCCATAGGCTGCCATCAAGGCCGGTCCCAGCAATTTCA
1521 GCCAGGCTGCCCCAGGGCCCAGACGTCTGTATACACAGCAGGCACCTGTGTCAGCTCAGTGTCGCTTCTGCTCAATGTCT
1601 ACCTCTCGCGGCTCCCATGCAGCCAGTGACGCTGCTGGTGGGGGCGGCTGGCACCGCCGTTGTGAATTGCCTGGCAAATT
1681 GGGTGCCCTCCTGGGGCTGGAGGGGTCTGGGCTCCTAACCCCCATCCCTGCTCTCCCCACTAGAAATGTGTCTTCAGTCT
1761 GCCAGCTCTTCTGCTCTACTTCCAGTGCTGCATCCTGCACTCAAGCCCAGGGCTGCTGGCGAGTCTATGGGGAGGAGTGC
1841 GGATCAGGCTCAGCCTCAGCCTCAGCCTCAGCCTCCTCTATGGTCCTGTCTCCTGGCGGTTCACAGGTGCCCATCCCCCC
1921 TTTAACATTTCACAGTTCTTGGCTTTCCAAAGGCACCAGCTCATATGGCATAGCCACCCCAACCCTAATCCTTCCCCCAA
2001 ATATCCTGATTTAAACTTGGGCAGACTTAGTCTGATTCTTGAAAACTCTACCATCTCCTTCTTGCAGAAGGCACTGGTTA
2081 CACTAAAATGATAAAATAATTAGTATGGGGTACTTTGCTCCCAGTTACATTCCCTCTTCCCTGAGAACCCCAGGCTAGGC
2161 GAGAGAGGGAGAGGGAGAGAGAAAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGGGAGAGAGAAAGAGAGAGAGAAAGAAA
2241 GGAAGACAGAGGAAAGAAAGGAAGACAGAGAGAGGAAGGCAGAGAGAGAGAGGGAGAAAGAAAGACAGGAAGGCAGAGAG
2321 AGAGAGAGAGAGAGAAAGGAAGACAGAGAGAGAGAGAGAGGAAGAGAGAGAGAGAGAGGAAGAGAGAGAGAGAGCTCATG
2401 AGCCAGGATCCCTGGGGAATTTGAAGTCAGTGTGACCAGGGTTCTGTGGCTCTGGGGTCAGAGCTGGGACACAGGACCCA
2481 GCAGGAGGGCCACCACCCCTTCCTTTTGGAAACAGCTCTGGTTCCAAGCAGCAATCAGGTAGGAGGATCGGGGCTTTGGC
2561 TGATGATGCACACACAAGATGCTGATGGTGTACGGTGAGATATTGTGAACGCAACAACTGGAGCTGTAGTTGGCGTGTGT
2641 GAGTGTGTACCTGCGGTTCTGTTTAGTGGCGAGACAAGGTATGTTTCAGTACTGCTTTCACGGCAACTGTGTAATGCATA
2721 TGCTCTTTCTACACTAGCGGTTTGCTCAGTTTTGTCTGTCCGGTTAAGTTGGAGAAAGAACCAAGTTGTGTTGTTCTCTG
2801 GAGGGGGTGCTGCTGCCTCTCCTTGAGTAGTTCTGTGACCCCCAATCCAGCTGTTTTGTAGAGAATCCTTCTAGCTTCTG
2881 GTATGCCTGCTCTCCAGCAGCTGGAAACAGATCTTCCTGCCTGACCAAAGCTCCTTGTTTCTTGCGTGGCATGTTTGTTC
2961 TTCCCGATCCGGTGGCTGTCGTAGCCGAGGGCCTGCCTGCCACCTTCCTTTATCATTTGCCCTGTTGGGGTTCAGGGTGC
3041 ATCCTTAGCCCAGGACCTGCTCTTCCAGCATCATGGGTTTTTTCCTAAAGATCTCAACGGCTCCCTTGGGCTCCATAAAA
3121 TATTTCTTTTTTAAAAAAGCAGACTCCTTTCATGCATTGGGATGAACGGCCCTCTTGTCTGGGTGCTGGGCTACAGCAAA
3201 CAAATGTGTTTGAATCCCAGTATTCCAGAGATTCCTGGCGGTGGGCTGTCTAGAAGAGGCGAGGCTGGATCTCACGGTTT
3281 TTAAACTGTATTTTTACCCCTTTGGGACCCATACCTGTGCCCTGGAGTCTTTCATGAGGCACGTGGGTCCTCTGCATCCT
3361 CACTCTCCCCCCTAGCCCAGGTGCAGCCCCGGGAGGGGTGCCCTGACCCCGCCTTAAACAACCAACTTTCCCACCGAATC
3441 CCATCGGCGGGCGGGGGGGGGGGGTTTGGGTGCCAAGTGCCCTGGAAACCTATTGTCTTTTGGCTCAGCCAAAAGAAACA
3521 TTCCCTCCTTCCTTTCCTTCCGGGCTTGGGGGAAACCTTCGTAAAAATCATAGTTAGGGTTAAGTCCAAGCAGTGAGGCC
3601 TGACCTGGGCTCTGCTCTCCTTGTTGAGACACTAACAGGCAGTTGGGAGGAAAATCTGCATTTGACTCCACCCTCTTTGG
3681 GGCAAAGGAGAAACAGGTGACCCGAGGGGGGGCAGGCCAGAGGAGGGCGACTCGTGCACAGGGACCCCCACCCTTGGACC
3761 CCGCTGTCCTTTTCTAGTTGTTTACTTGGTGGTGGCAGCCAGTCTGACCTTGTCTGTGGTCTGACTGTTCCTAAGTGTGT
3841 AACTTTCAGTATTATCTGTGACAGATGGTTCTGTGGTGAAAAAGGTTTATTATATTCCTTATGGCTGCCTTGTACAAAAT
3921 CCGTTAGAAACGCTAATGTAAGATATCAGATTTCTAACAAGACAAAAACAGCATTATGGAGTTAAAAGATTTTTACAACT
4001 GGGTCTTGATTTTGATGTGAGCTGGTTTTTAGCTCTCAAATGTTGTCACTTAAATAAAAACCTTCTTTGCCTTTAAAAAA
4081 AAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uccCGGGGAGGCGAGGAGGAGGGAa 5'
             ||||: || | :  ||||||| 
Target 5' ggaGCCCTGCCTCATGCCCTCCCTt 3'
 696 - 720 162.00 -27.60
2 
miRNA  3' ucCCGGGG-AGGCG----AGGAGGAGGGAa 5'
            |||:||  |:|:    |:|||:||||| 
Target 5' ttGGCTCCAACTGTTGTATTCTCTTCCCTt 3'
 1241 - 1270 153.00 -28.80
3 
miRNA  3' ucCCG-GGGAGG-CGAGGA--GGAGGGaa 5'
            ||| :::||| |||::|  ||||||  
Target 5' caGGCGTTTTCCTGCTTTTTCCCTCCCgt 3'
 85 - 113 149.00 -25.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
324741 34 ClinVar
324740 35 ClinVar
888912 54 ClinVar
892312 102 ClinVar
324739 198 ClinVar
324738 299 ClinVar
324737 484 ClinVar
324736 555 ClinVar
324735 556 ClinVar
324734 561 ClinVar
324733 576 ClinVar
324732 583 ClinVar
891105 604 ClinVar
324731 641 ClinVar
324730 674 ClinVar
324729 824 ClinVar
891104 840 ClinVar
324728 924 ClinVar
324727 960 ClinVar
324726 1095 ClinVar
324725 1106 ClinVar
890536 1223 ClinVar
324724 1299 ClinVar
324723 1313 ClinVar
890535 1386 ClinVar
890534 1461 ClinVar
888841 1482 ClinVar
888840 1545 ClinVar
888839 1571 ClinVar
324722 1617 ClinVar
888838 1637 ClinVar
888837 1646 ClinVar
324721 1656 ClinVar
324720 1673 ClinVar
324719 1733 ClinVar
324718 1840 ClinVar
324717 1909 ClinVar
324716 2026 ClinVar
324715 2038 ClinVar
324714 2061 ClinVar
324713 2088 ClinVar
892248 2160 ClinVar
324712 2185 ClinVar
324711 2199 ClinVar
324710 2203 ClinVar
891024 2207 ClinVar
324708 2214 ClinVar
324709 2214 ClinVar
324707 2289 ClinVar
324706 2302 ClinVar
324705 2306 ClinVar
324704 2309 ClinVar
891023 2334 ClinVar
324700 2336 ClinVar
324701 2336 ClinVar
324702 2336 ClinVar
324703 2336 ClinVar
324699 2338 ClinVar
324698 2361 ClinVar
324697 2379 ClinVar
891022 2390 ClinVar
324696 2395 ClinVar
891021 2482 ClinVar
324695 2701 ClinVar
890461 2762 ClinVar
890460 2830 ClinVar
890459 2845 ClinVar
324687 2957 ClinVar
888752 2971 ClinVar
324686 2981 ClinVar
892189 3106 ClinVar
324685 3132 ClinVar
892188 3162 ClinVar
324683 3239 ClinVar
324681 3253 ClinVar
890395 3327 ClinVar
324679 3342 ClinVar
324678 3371 ClinVar
888687 3371 ClinVar
324677 3390 ClinVar
324671 3446 ClinVar
888686 3446 ClinVar
324676 3448 ClinVar
888685 3448 ClinVar
324675 3449 ClinVar
888683 3449 ClinVar
888684 3449 ClinVar
892129 3451 ClinVar
324673 3452 ClinVar
324674 3452 ClinVar
324672 3453 ClinVar
892128 3453 ClinVar
324668 3454 ClinVar
324669 3454 ClinVar
324670 3454 ClinVar
324667 3456 ClinVar
324666 3457 ClinVar
892127 3458 ClinVar
324665 3462 ClinVar
324664 3464 ClinVar
324662 3465 ClinVar
324663 3465 ClinVar
324661 3509 ClinVar
324660 3541 ClinVar
324659 3556 ClinVar
324658 3561 ClinVar
890894 3685 ClinVar
324657 3693 ClinVar
324656 3706 ClinVar
324655 3707 ClinVar
324654 3708 ClinVar
890893 3723 ClinVar
890892 3734 ClinVar
890891 3762 ClinVar
324653 3878 ClinVar
324652 4047 ClinVar
COSN31614273 2 COSMIC
COSN26538031 13 COSMIC
COSN1199946 20 COSMIC
COSN28224276 28 COSMIC
COSN20060363 29 COSMIC
COSN31583809 44 COSMIC
COSN30126621 52 COSMIC
COSN30118865 55 COSMIC
COSN30461181 88 COSMIC
COSN30660041 112 COSMIC
COSN7442829 227 COSMIC
COSN6659786 484 COSMIC
COSN7052408 549 COSMIC
COSN20113417 577 COSMIC
COSN9672480 637 COSMIC
COSN22187970 696 COSMIC
COSN16168158 1593 COSMIC
COSN19215990 1637 COSMIC
COSN26310581 2053 COSMIC
COSN29273272 2198 COSMIC
COSN20113409 2295 COSMIC
COSN9320272 2300 COSMIC
COSN20113401 2315 COSMIC
COSN32064895 2327 COSMIC
COSN19290180 2330 COSMIC
COSN15650442 2335 COSMIC
COSN32063005 2335 COSMIC
COSN26104105 2452 COSMIC
COSN15117041 2471 COSMIC
COSN24294751 2511 COSMIC
COSN9320271 2551 COSMIC
COSN22817370 3122 COSMIC
COSN6659782 3239 COSMIC
COSN20093197 3253 COSMIC
COSN20093196 3434 COSMIC
COSN20113393 3445 COSMIC
COSN32061733 3452 COSMIC
COSN27315224 3453 COSMIC
COSN20093195 3454 COSMIC
COSN20093194 3456 COSMIC
COSN20113381 3553 COSMIC
COSN17926218 3688 COSMIC
COSN15661242 3858 COSMIC
rs4796330 1840 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1377702438 4 dbSNP
rs755956705 5 dbSNP
rs1273167423 7 dbSNP
rs377599110 8 dbSNP
rs779934066 10 dbSNP
rs1161309746 12 dbSNP
rs1417430641 13 dbSNP
rs1485673110 16 dbSNP
rs1411467935 18 dbSNP
rs758529105 20 dbSNP
rs1475403138 24 dbSNP
rs1259429079 28 dbSNP
rs1185066793 29 dbSNP
rs750637790 30 dbSNP
rs1482853083 32 dbSNP
rs1261263247 33 dbSNP
rs189434615 34 dbSNP
rs1159642666 35 dbSNP
rs748647107 35 dbSNP
rs769898629 35 dbSNP
rs1314659967 36 dbSNP
rs1287299282 41 dbSNP
rs1233586419 47 dbSNP
rs766352141 54 dbSNP
rs957424475 56 dbSNP
rs1008177878 59 dbSNP
rs1379419181 63 dbSNP
rs762997138 70 dbSNP
rs528096089 77 dbSNP
rs890444650 80 dbSNP
rs1000616027 88 dbSNP
rs1029447925 89 dbSNP
rs905034379 90 dbSNP
rs1214063181 102 dbSNP
rs996268162 107 dbSNP
rs1277075788 108 dbSNP
rs1023460881 111 dbSNP
rs1013492268 112 dbSNP
rs1255414018 121 dbSNP
rs1473532312 132 dbSNP
rs1037794378 140 dbSNP
rs1407151423 141 dbSNP
rs1417135448 144 dbSNP
rs940880810 145 dbSNP
rs1359413778 152 dbSNP
rs1433662905 153 dbSNP
rs1319010046 157 dbSNP
rs1371798067 162 dbSNP
rs1409889367 165 dbSNP
rs1373205343 166 dbSNP
rs1222454423 169 dbSNP
rs886663019 170 dbSNP
rs896419885 170 dbSNP
rs1210351298 172 dbSNP
rs1278448156 175 dbSNP
rs1035998331 176 dbSNP
rs772865137 178 dbSNP
rs747178533 180 dbSNP
rs1232277420 183 dbSNP
rs1479597141 185 dbSNP
rs559174920 186 dbSNP
rs887484505 188 dbSNP
rs542520491 198 dbSNP
rs1171441352 202 dbSNP
rs931753544 202 dbSNP
rs1284294701 205 dbSNP
rs922081282 206 dbSNP
rs574990768 207 dbSNP
rs761907469 214 dbSNP
rs925045461 215 dbSNP
rs1295653982 219 dbSNP
rs1330780983 229 dbSNP
rs1465995302 231 dbSNP
rs913488153 234 dbSNP
rs1301589179 235 dbSNP
rs988795503 239 dbSNP
rs1019484400 242 dbSNP
rs986714902 245 dbSNP
rs954133378 248 dbSNP
rs957370486 250 dbSNP
rs772178083 253 dbSNP
rs1171268376 258 dbSNP
rs570854226 263 dbSNP
rs1033012986 264 dbSNP
rs368242380 272 dbSNP
rs1249539958 274 dbSNP
rs1236285685 278 dbSNP
rs1166819784 279 dbSNP
rs1406593567 280 dbSNP
rs1167594652 281 dbSNP
rs1395831911 283 dbSNP
rs980150523 292 dbSNP
rs1440682694 294 dbSNP
rs886053297 299 dbSNP
rs899223810 305 dbSNP
rs1367653310 308 dbSNP
rs970147928 319 dbSNP
rs1016315061 320 dbSNP
rs1269678184 323 dbSNP
rs1023450267 327 dbSNP
rs1013856832 329 dbSNP
rs1230091355 332 dbSNP
rs1290555107 340 dbSNP
rs563332544 346 dbSNP
rs886589379 350 dbSNP
rs896367975 352 dbSNP
rs1015257138 358 dbSNP
rs1458549522 360 dbSNP
rs1192106683 364 dbSNP
rs1239987204 365 dbSNP
rs543632531 366 dbSNP
rs1419253300 368 dbSNP
rs1013828223 371 dbSNP
rs1391207025 376 dbSNP
rs1401649347 380 dbSNP
rs1317974772 381 dbSNP
rs895392043 388 dbSNP
rs578023917 390 dbSNP
rs1293933004 392 dbSNP
rs866938187 395 dbSNP
rs1003683048 398 dbSNP
rs1231303957 401 dbSNP
rs558301009 406 dbSNP
rs1054777249 412 dbSNP
rs936349565 431 dbSNP
rs887432200 433 dbSNP
rs1281760414 435 dbSNP
rs924970871 435 dbSNP
rs1290105019 438 dbSNP
rs1048787450 445 dbSNP
rs1256129377 446 dbSNP
rs931701258 448 dbSNP
rs1186511315 455 dbSNP
rs1414822849 456 dbSNP
rs1042143853 457 dbSNP
rs1158311295 458 dbSNP
rs900270322 459 dbSNP
rs1227287793 460 dbSNP
rs1313563672 475 dbSNP
rs1374991709 476 dbSNP
rs1412996552 479 dbSNP
rs12449488 484 dbSNP
rs1281274627 486 dbSNP
rs772040536 490 dbSNP
rs34376003 497 dbSNP
rs944878781 499 dbSNP
rs1447429673 503 dbSNP
rs913445826 513 dbSNP
rs989466619 515 dbSNP
rs1277511655 519 dbSNP
rs34098965 521 dbSNP
rs986640123 526 dbSNP
rs1346705967 532 dbSNP
rs1234482746 537 dbSNP
rs936293521 539 dbSNP
rs1484438606 542 dbSNP
rs925945030 543 dbSNP
rs35358486 546 dbSNP
rs1206656159 553 dbSNP
rs147071422 555 dbSNP
rs4796500 556 dbSNP
rs1181555019 558 dbSNP
rs1024816638 559 dbSNP
rs186452214 561 dbSNP
rs747055792 569 dbSNP
rs879491370 574 dbSNP
rs570375031 576 dbSNP
rs1004919427 577 dbSNP
rs1390694902 579 dbSNP
rs950836120 579 dbSNP
rs1326617200 583 dbSNP
rs57661669 583 dbSNP
rs1025062655 584 dbSNP
rs1440863231 585 dbSNP
rs1014792272 586 dbSNP
rs1230002297 592 dbSNP
rs1267921337 594 dbSNP
rs1004789878 599 dbSNP
rs1340685473 600 dbSNP
rs951966240 604 dbSNP
rs1195794559 607 dbSNP
rs556463790 620 dbSNP
rs540039510 630 dbSNP
rs1470145101 631 dbSNP
rs995854553 635 dbSNP
rs1252641083 636 dbSNP
rs4796331 641 dbSNP
rs1170583349 643 dbSNP
rs772510882 670 dbSNP
rs886053296 674 dbSNP
rs1461541262 677 dbSNP
rs903519944 678 dbSNP
rs746433104 680 dbSNP
rs1441421739 685 dbSNP
rs1324915253 688 dbSNP
rs1040531271 690 dbSNP
rs1008686964 693 dbSNP
rs912318214 695 dbSNP
rs779142289 696 dbSNP
rs1287556956 698 dbSNP
rs1240179054 699 dbSNP
rs1352934672 706 dbSNP
rs748322215 707 dbSNP
rs1306951849 718 dbSNP
rs891952420 719 dbSNP
rs1272886316 731 dbSNP
rs1368026702 732 dbSNP
rs1294407766 733 dbSNP
rs757681886 742 dbSNP
rs1188580821 747 dbSNP
rs1262679887 751 dbSNP
rs974378038 752 dbSNP
rs936241260 754 dbSNP
rs1419979366 765 dbSNP
rs551063805 767 dbSNP
rs534277863 782 dbSNP
rs565325203 783 dbSNP
rs548613946 788 dbSNP
rs1163950528 790 dbSNP
rs1392105621 790 dbSNP
rs962639390 791 dbSNP
rs1380276766 796 dbSNP
rs1380055961 799 dbSNP
rs749635792 800 dbSNP
rs1435344788 801 dbSNP
rs948723840 816 dbSNP
rs111943449 824 dbSNP
rs372997992 825 dbSNP
rs527913009 825 dbSNP
rs1261573997 826 dbSNP
rs1485643607 831 dbSNP
rs201330101 831 dbSNP
rs993311106 831 dbSNP
rs1013703139 832 dbSNP
rs1259622178 838 dbSNP
rs961511171 840 dbSNP
rs1187206534 849 dbSNP
rs1415548712 850 dbSNP
rs754682052 854 dbSNP
rs1216757046 866 dbSNP
rs983302218 867 dbSNP
rs959788618 869 dbSNP
rs1451105703 880 dbSNP
rs1304088179 885 dbSNP
rs1283869282 889 dbSNP
rs951912904 891 dbSNP
rs1027579949 893 dbSNP
rs1375599401 895 dbSNP
rs1413619938 896 dbSNP
rs375650203 903 dbSNP
rs1312859188 909 dbSNP
rs535610247 914 dbSNP
rs370202860 915 dbSNP
rs549677933 924 dbSNP
rs539130248 929 dbSNP
rs1308098091 945 dbSNP
rs1312638090 947 dbSNP
rs1237238620 957 dbSNP
rs1009052462 958 dbSNP
rs1282723975 959 dbSNP
rs1210208127 960 dbSNP
rs560454526 960 dbSNP
rs1255353932 969 dbSNP
rs1217217688 972 dbSNP
rs891568691 974 dbSNP
rs1343909837 981 dbSNP
rs1177582672 986 dbSNP
rs1053194939 993 dbSNP
rs1400749982 994 dbSNP
rs1175189040 995 dbSNP
rs904114842 996 dbSNP
rs1287118121 997 dbSNP
rs1020594310 1005 dbSNP
rs1000335362 1009 dbSNP
rs904743185 1010 dbSNP
rs1444907211 1014 dbSNP
rs1299236277 1017 dbSNP
rs1468040933 1019 dbSNP
rs1373125781 1020 dbSNP
rs1390004823 1026 dbSNP
rs1305946076 1032 dbSNP
rs1360201767 1033 dbSNP
rs1044622943 1035 dbSNP
rs1009255757 1044 dbSNP
rs372464395 1052 dbSNP
rs1278210867 1054 dbSNP
rs751056034 1063 dbSNP
rs1309192499 1064 dbSNP
rs1051274657 1070 dbSNP
rs533176548 1078 dbSNP
rs899660933 1080 dbSNP
rs564527328 1086 dbSNP
rs1431771847 1090 dbSNP
rs1314521860 1092 dbSNP
rs1253276975 1093 dbSNP
rs779765367 1095 dbSNP
rs941245754 1096 dbSNP
rs1421102352 1098 dbSNP
rs886053295 1106 dbSNP
rs908466873 1110 dbSNP
rs751684707 1111 dbSNP
rs983249034 1113 dbSNP
rs929298160 1121 dbSNP
rs1372016846 1138 dbSNP
rs181845197 1146 dbSNP
rs1273296361 1155 dbSNP
rs917951038 1157 dbSNP
rs951862189 1160 dbSNP
rs1215216208 1165 dbSNP
rs1272260079 1166 dbSNP
rs1319716549 1170 dbSNP
rs992651234 1172 dbSNP
rs959520460 1182 dbSNP
rs920465689 1190 dbSNP
rs1260308142 1194 dbSNP
rs1243464120 1199 dbSNP
rs1475476840 1202 dbSNP
rs974651759 1203 dbSNP
rs964688012 1204 dbSNP
rs1185389645 1206 dbSNP
rs1219481685 1207 dbSNP
rs1340049932 1213 dbSNP
rs1477094232 1218 dbSNP
rs141728004 1223 dbSNP
rs1218782283 1226 dbSNP
rs979628031 1226 dbSNP
rs1397819136 1227 dbSNP
rs1347152127 1229 dbSNP
rs968266319 1236 dbSNP
rs879010783 1246 dbSNP
rs1021229398 1261 dbSNP
rs955956786 1268 dbSNP
rs1031393615 1270 dbSNP
rs376994581 1272 dbSNP
rs1468624726 1273 dbSNP
rs1333951284 1276 dbSNP
rs1211552679 1289 dbSNP
rs1285944519 1291 dbSNP
rs999938562 1297 dbSNP
rs572613228 1298 dbSNP
rs7218551 1299 dbSNP
rs1029368814 1302 dbSNP
rs542237010 1311 dbSNP
rs1013565148 1312 dbSNP
rs188929777 1313 dbSNP
rs1419186540 1316 dbSNP
rs1475108981 1317 dbSNP
rs1420966732 1323 dbSNP
rs556836250 1333 dbSNP
rs1410472428 1342 dbSNP
rs1401448414 1349 dbSNP
rs941214454 1350 dbSNP
rs1358763308 1362 dbSNP
rs1416672743 1375 dbSNP
rs1313446644 1379 dbSNP
rs1189058911 1387 dbSNP
rs1057434080 1391 dbSNP
rs750412189 1406 dbSNP
rs764916843 1410 dbSNP
rs1281012618 1421 dbSNP
rs763713267 1424 dbSNP
rs1046949205 1425 dbSNP
rs950010715 1426 dbSNP
rs1210942511 1430 dbSNP
rs1319542802 1432 dbSNP
rs917904506 1443 dbSNP
rs1485605561 1447 dbSNP
rs887150283 1448 dbSNP
rs1185890196 1449 dbSNP
rs1258478802 1461 dbSNP
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rs992180526 1467 dbSNP
rs1158258681 1468 dbSNP
rs1378663040 1469 dbSNP
rs938056198 1471 dbSNP
rs1048507529 1481 dbSNP
rs372757907 1482 dbSNP
rs979568367 1491 dbSNP
rs1394149723 1494 dbSNP
rs968195741 1504 dbSNP
rs577031439 1505 dbSNP
rs553984034 1506 dbSNP
rs920414693 1508 dbSNP
rs974628782 1510 dbSNP
rs988388891 1513 dbSNP
rs757820450 1519 dbSNP
rs955683207 1523 dbSNP
rs534406746 1531 dbSNP
rs943258725 1532 dbSNP
rs1312719272 1540 dbSNP
rs370711212 1543 dbSNP
rs996527559 1544 dbSNP
rs565463582 1545 dbSNP
rs548688744 1548 dbSNP
rs1275691950 1549 dbSNP
rs1005284801 1552 dbSNP
rs987510590 1562 dbSNP
rs955728273 1566 dbSNP
rs1236603070 1568 dbSNP
rs1046916119 1569 dbSNP
rs36042415 1577 dbSNP
rs1194344763 1578 dbSNP
rs1446460748 1583 dbSNP
rs535449001 1584 dbSNP
rs1464597560 1593 dbSNP
rs752724797 1598 dbSNP
rs1164619230 1601 dbSNP
rs569825705 1607 dbSNP
rs550055944 1608 dbSNP
rs1031330122 1609 dbSNP
rs978467484 1610 dbSNP
rs1372746001 1612 dbSNP
rs191391858 1617 dbSNP
rs1302234653 1625 dbSNP
rs1023064567 1630 dbSNP
rs1238671373 1631 dbSNP
rs1253623936 1632 dbSNP
rs1340610993 1638 dbSNP
rs1198421278 1639 dbSNP
rs1013097477 1642 dbSNP
rs564264060 1644 dbSNP
rs1470102510 1645 dbSNP
rs761623031 1646 dbSNP
rs1266913245 1647 dbSNP
rs1004912176 1655 dbSNP
rs547660659 1656 dbSNP
rs1195369665 1658 dbSNP
rs887099374 1659 dbSNP
rs753609983 1673 dbSNP
rs931367635 1682 dbSNP
rs527765774 1684 dbSNP
rs932418980 1689 dbSNP
rs899938278 1691 dbSNP
rs1168282954 1699 dbSNP
rs1396505341 1700 dbSNP
rs1039251963 1702 dbSNP
rs943227233 1703 dbSNP
rs1324845966 1716 dbSNP
rs1248754519 1720 dbSNP
rs1383434051 1721 dbSNP
rs1295598229 1723 dbSNP
rs1327533072 1726 dbSNP
rs946821849 1727 dbSNP
rs562178969 1733 dbSNP
rs1211857341 1735 dbSNP
rs911760819 1735 dbSNP
rs1276840137 1740 dbSNP
rs914063278 1750 dbSNP
rs987396005 1752 dbSNP
rs955771864 1755 dbSNP
rs1264952725 1758 dbSNP
rs1265118223 1762 dbSNP
rs1487600201 1773 dbSNP
rs1206987908 1776 dbSNP
rs1262439820 1777 dbSNP
rs1488003613 1784 dbSNP
rs1191495253 1789 dbSNP
rs922894553 1805 dbSNP
rs975453281 1809 dbSNP
rs764237426 1820 dbSNP
rs963730866 1820 dbSNP
rs112870569 1821 dbSNP
rs568463482 1826 dbSNP
rs1005252235 1827 dbSNP
rs1397561561 1828 dbSNP
rs4796330 1840 dbSNP
rs1387000814 1841 dbSNP
rs1234311138 1848 dbSNP
rs1312382881 1859 dbSNP
rs1241533404 1876 dbSNP
rs1261520833 1876 dbSNP
rs879161242 1876 dbSNP
rs576388005 1877 dbSNP
rs1353142189 1879 dbSNP
rs866298376 1894 dbSNP
rs772207394 1898 dbSNP
rs58508424 1909 dbSNP
rs915668711 1913 dbSNP
rs1420953179 1916 dbSNP
rs369701789 1918 dbSNP
rs1485922682 1924 dbSNP
rs1181069787 1926 dbSNP
rs1253899615 1956 dbSNP
rs1380892345 1962 dbSNP
rs1157959601 1963 dbSNP
rs375831523 1967 dbSNP
rs1379270680 1983 dbSNP
rs774973073 1984 dbSNP
rs1468471216 1999 dbSNP
rs1174921893 2005 dbSNP
rs1377813779 2007 dbSNP
rs546465261 2010 dbSNP
rs1001880430 2021 dbSNP
rs570855209 2026 dbSNP
rs1308030747 2030 dbSNP
rs552929922 2038 dbSNP
rs1298802375 2046 dbSNP
rs1282475898 2054 dbSNP
rs4796499 2061 dbSNP
rs1220409019 2064 dbSNP
rs560806270 2071 dbSNP
rs1481516134 2072 dbSNP
rs1177528046 2083 dbSNP
rs553924408 2086 dbSNP
rs4796329 2088 dbSNP
rs1176017660 2098 dbSNP
rs1194963808 2103 dbSNP
rs1216523693 2105 dbSNP
rs913988507 2109 dbSNP
rs1176040172 2110 dbSNP
rs1004455726 2112 dbSNP
rs1052579898 2123 dbSNP
rs934187506 2124 dbSNP
rs1180179862 2148 dbSNP
rs778011901 2160 dbSNP
rs1376442966 2164 dbSNP
rs1444926413 2167 dbSNP
rs1305880591 2173 dbSNP
rs1026965181 2174 dbSNP
rs768409292 2181 dbSNP
rs200932060 2183 dbSNP
rs1204974226 2185 dbSNP
rs886053294 2185 dbSNP
rs1456275444 2187 dbSNP
rs964681330 2187 dbSNP
rs1215243841 2194 dbSNP
rs1280946375 2194 dbSNP
rs571776176 2196 dbSNP
rs995521338 2198 dbSNP
rs548870374 2199 dbSNP
rs1172002783 2200 dbSNP
rs1296969620 2200 dbSNP
rs1430739192 2200 dbSNP
rs57020510 2200 dbSNP
rs199499137 2202 dbSNP
rs28593105 2203 dbSNP
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rs564709685 2204 dbSNP
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rs1172979565 2205 dbSNP
rs1008761194 2207 dbSNP
rs1477558303 2209 dbSNP
rs920612924 2210 dbSNP
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rs1052055505 2213 dbSNP
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rs374153991 2214 dbSNP
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rs7502470 2214 dbSNP
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rs1218744604 2223 dbSNP
rs1243410183 2223 dbSNP
rs1025361621 2224 dbSNP
rs934553291 2225 dbSNP
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rs993016239 2228 dbSNP
rs924543600 2229 dbSNP
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rs1297551474 2239 dbSNP
rs1400671008 2239 dbSNP
rs1338289369 2240 dbSNP
rs1284498789 2242 dbSNP
rs1416418369 2242 dbSNP
rs1355365662 2246 dbSNP
rs1281308831 2251 dbSNP
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rs1201434846 2256 dbSNP
rs1344735964 2257 dbSNP
rs1260938729 2261 dbSNP
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rs1263129775 2272 dbSNP
rs1190520111 2275 dbSNP
rs200798736 2275 dbSNP
rs535063040 2279 dbSNP
rs1472668250 2280 dbSNP
rs111258011 2284 dbSNP
rs1161730859 2288 dbSNP
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rs1417237163 2293 dbSNP
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rs558119335 2293 dbSNP
rs1334722192 2295 dbSNP
rs1339704285 2297 dbSNP
rs868504407 2298 dbSNP
rs1280958213 2300 dbSNP
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rs1340685764 2302 dbSNP
rs56400419 2302 dbSNP
rs372733033 2306 dbSNP
rs60799398 2306 dbSNP
rs72196929 2306 dbSNP
rs886053291 2307 dbSNP
rs928802167 2307 dbSNP
rs1442249360 2308 dbSNP
rs760233482 2309 dbSNP
rs368723101 2313 dbSNP
rs1001451891 2314 dbSNP
rs904447983 2314 dbSNP
rs1378604393 2316 dbSNP
rs1342238218 2318 dbSNP
rs796884237 2324 dbSNP
rs1455623869 2326 dbSNP
rs1334718992 2333 dbSNP
rs1491511195 2335 dbSNP
rs112833778 2336 dbSNP
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rs1233303756 2336 dbSNP
rs1401357435 2336 dbSNP
rs199647301 2336 dbSNP
rs74390995 2336 dbSNP
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rs886053290 2336 dbSNP
rs144836655 2338 dbSNP
rs1198665357 2339 dbSNP
rs1236545530 2339 dbSNP
rs1260326019 2339 dbSNP
rs1455663099 2339 dbSNP
rs748724464 2339 dbSNP
rs759560672 2339 dbSNP
rs879931552 2339 dbSNP
rs1172474474 2340 dbSNP
rs879109172 2341 dbSNP
rs1467397703 2342 dbSNP
rs1424551079 2343 dbSNP
rs1384499539 2344 dbSNP
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rs1181251006 2348 dbSNP
rs1239778165 2348 dbSNP
rs1188849436 2350 dbSNP
rs951582318 2355 dbSNP
rs1461205713 2360 dbSNP
rs1010927498 2361 dbSNP
rs1022263353 2361 dbSNP
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rs892524210 2361 dbSNP
rs1241699360 2362 dbSNP
rs386794925 2363 dbSNP
rs1200860373 2364 dbSNP
rs1027250021 2366 dbSNP
rs1256421934 2367 dbSNP
rs1318192853 2367 dbSNP
rs561640902 2370 dbSNP
rs901335325 2373 dbSNP
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rs1266846090 2374 dbSNP
rs57242343 2375 dbSNP
rs942929459 2376 dbSNP
rs1168213208 2379 dbSNP
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rs886053289 2379 dbSNP
rs1419593895 2382 dbSNP
rs1458039635 2386 dbSNP
rs1018718395 2388 dbSNP
rs1357839142 2391 dbSNP
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rs1276624222 2395 dbSNP
rs1341623056 2395 dbSNP
rs553650590 2395 dbSNP
rs768953816 2395 dbSNP
rs879510349 2395 dbSNP
rs983723937 2395 dbSNP
rs1008291367 2396 dbSNP
rs1265063537 2396 dbSNP
rs891222434 2403 dbSNP
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rs1034152813 2471 dbSNP
rs1296872563 2472 dbSNP
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rs570789855 2499 dbSNP
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rs1202004599 2591 dbSNP
rs901258935 2592 dbSNP
rs1289993393 2593 dbSNP
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rs375892189 2599 dbSNP
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rs999603599 2621 dbSNP
rs1240673022 2634 dbSNP
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rs1021443070 2664 dbSNP
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rs1011429819 2679 dbSNP
rs141077350 2681 dbSNP
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rs1427714881 2687 dbSNP
rs1055436954 2699 dbSNP
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rs929747878 2732 dbSNP
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rs978134172 2841 dbSNP
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rs906858082 2935 dbSNP
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rs760882866 2970 dbSNP
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rs955919510 3029 dbSNP
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rs1057500816 3190 dbSNP
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rs1222010341 3201 dbSNP
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rs1176088122 3260 dbSNP
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rs1341520281 3299 dbSNP
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rs1025568019 3357 dbSNP
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rs779802158 3371 dbSNP
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rs1228314581 3375 dbSNP
rs952774229 3380 dbSNP
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rs1293438238 3403 dbSNP
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rs1398318821 3408 dbSNP
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rs998318184 3410 dbSNP
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rs1203112326 3415 dbSNP
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rs1402083273 3420 dbSNP
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rs560369662 3435 dbSNP
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rs377452533 3448 dbSNP
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rs1257617513 3450 dbSNP
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rs1372700734 3453 dbSNP
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rs200905881 3457 dbSNP
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rs1301181469 3459 dbSNP
rs866706774 3459 dbSNP
rs369782328 3460 dbSNP
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rs1343199139 3464 dbSNP
rs886053276 3464 dbSNP
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rs796611466 3465 dbSNP
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rs1249712061 3471 dbSNP
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rs1212570805 3492 dbSNP
rs530370695 3493 dbSNP
rs1244310996 3497 dbSNP
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rs188088185 3509 dbSNP
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rs375258000 3548 dbSNP
rs1176753245 3551 dbSNP
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rs61555153 3556 dbSNP
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rs1225688681 3592 dbSNP
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rs1438433712 3613 dbSNP
rs1016987280 3615 dbSNP
rs1181031370 3632 dbSNP
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rs1478891654 3644 dbSNP
rs1199810970 3651 dbSNP
rs1428321475 3666 dbSNP
rs1364175774 3671 dbSNP
rs1172335888 3674 dbSNP
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rs1396656310 3677 dbSNP
rs771884092 3682 dbSNP
rs1180763211 3683 dbSNP
rs1029417759 3684 dbSNP
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rs3169862 3693 dbSNP
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rs973224524 3701 dbSNP
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rs139829663 3703 dbSNP
rs1220913221 3704 dbSNP
rs1356402009 3705 dbSNP
rs1272119615 3706 dbSNP
rs886053275 3706 dbSNP
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rs1195429230 3710 dbSNP
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rs1031376606 3716 dbSNP
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rs1268561478 3739 dbSNP
rs929400883 3745 dbSNP
rs901595381 3756 dbSNP
rs918411536 3762 dbSNP
rs749252066 3763 dbSNP
rs943230335 3768 dbSNP
rs1300679213 3789 dbSNP
rs941234691 3792 dbSNP
rs1206604604 3793 dbSNP
rs1262008019 3795 dbSNP
rs1421464306 3799 dbSNP
rs1190566545 3804 dbSNP
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rs535298187 3819 dbSNP
rs909802901 3832 dbSNP
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rs1444690815 3852 dbSNP
rs888977532 3855 dbSNP
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rs1029781314 3866 dbSNP
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rs1048945931 3876 dbSNP
rs56787229 3878 dbSNP
rs12952259 3884 dbSNP
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rs755953552 3888 dbSNP
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rs1451330340 3891 dbSNP
rs538609937 3892 dbSNP
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rs1480848977 3907 dbSNP
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rs894016884 3922 dbSNP
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rs1046462675 3984 dbSNP
rs1281268450 3996 dbSNP
rs1408483357 3997 dbSNP
rs1453488097 4008 dbSNP
rs1342430275 4014 dbSNP
rs1401803708 4017 dbSNP
rs1326452006 4019 dbSNP
rs993553320 4023 dbSNP
rs1307586128 4040 dbSNP
rs897930581 4041 dbSNP
rs767657912 4042 dbSNP
rs886053274 4047 dbSNP
rs1403898118 4056 dbSNP
rs1264634412 4060 dbSNP
rs1031304438 4070 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucccggggaggcgaGGAGGAGGGAa 5'
                        || ||||||| 
Target 5' ------------acCCACCUCCCUc 3'
 		1 - 13
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000421306.3 | 3UTR | ACCCACCUCCCUCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
206 hsa-miR-4739 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057839 SLC30A7 solute carrier family 30 member 7 2 2
MIRT059680 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT083284 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT117523 MIDN midnolin 2 2
MIRT125598 SCD stearoyl-CoA desaturase 2 2
MIRT158424 TNRC6B trinucleotide repeat containing 6B 2 4
MIRT180896 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT183522 BTG2 BTG anti-proliferation factor 2 2 4
MIRT197842 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT227610 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT260049 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT266231 PEX11B peroxisomal biogenesis factor 11 beta 2 2
MIRT267389 TMEM138 transmembrane protein 138 2 2
MIRT284431 CAPN15 calpain 15 2 2
MIRT293023 ZNF566 zinc finger protein 566 2 2
MIRT318024 CENPQ centromere protein Q 2 2
MIRT339336 SESN2 sestrin 2 2 2
MIRT445769 CCND3 cyclin D3 2 2
MIRT451026 MYH14 myosin heavy chain 14 2 8
MIRT451436 TJP3 tight junction protein 3 2 4
MIRT451704 C1RL complement C1r subcomponent like 2 2
MIRT451968 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT452008 FKBP5 FK506 binding protein 5 2 2
MIRT452471 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT452720 DTHD1 death domain containing 1 2 2
MIRT453490 PITPNM3 PITPNM family member 3 2 2
MIRT454314 ZNF134 zinc finger protein 134 2 2
MIRT454401 NRG4 neuregulin 4 2 2
MIRT454498 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 2 2
MIRT454839 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT455147 TBC1D25 TBC1 domain family member 25 2 2
MIRT455887 KIF2C kinesin family member 2C 2 2
MIRT456138 SAMD10 sterile alpha motif domain containing 10 2 2
MIRT456165 TTF2 transcription termination factor 2 2 2
MIRT457167 MXRA7 matrix remodeling associated 7 2 2
MIRT457444 NOL10 nucleolar protein 10 2 2
MIRT457571 ZNF34 zinc finger protein 34 2 2
MIRT457632 UPK3BL uroplakin 3B like 1 2 2
MIRT458748 CES2 carboxylesterase 2 2 2
MIRT459493 CCL11 C-C motif chemokine ligand 11 2 2
MIRT459936 HHIP hedgehog interacting protein 2 4
MIRT460104 GNG3 G protein subunit gamma 3 2 2
MIRT460154 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460195 PCYT1A phosphate cytidylyltransferase 1, choline, alpha 2 2
MIRT460324 SH3RF1 SH3 domain containing ring finger 1 2 2
MIRT460665 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460703 RNF157 ring finger protein 157 2 2
MIRT460898 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461581 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461825 SNAP23 synaptosome associated protein 23 2 2
MIRT462041 FAAH fatty acid amide hydrolase 2 2
MIRT462119 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT462467 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT462811 NTN1 netrin 1 2 2
MIRT463339 ZFHX3 zinc finger homeobox 3 2 2
MIRT463452 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463928 WNT3 Wnt family member 3 2 2
MIRT464274 VCL vinculin 2 2
MIRT465378 TPM3 tropomyosin 3 2 6
MIRT465558 TOB2 transducer of ERBB2, 2 2 2
MIRT466363 THBS1 thrombospondin 1 2 2
MIRT467363 SP2 Sp2 transcription factor 2 2
MIRT467781 SLC2A4 solute carrier family 2 member 4 2 2
MIRT467826 SLC29A2 solute carrier family 29 member 2 2 2
MIRT468112 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT468733 SDC4 syndecan 4 2 2
MIRT469178 RNF111 ring finger protein 111 2 2
MIRT469577 RARA retinoic acid receptor alpha 2 2
MIRT470790 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT471177 PHB2 prohibitin 2 2 2
MIRT471325 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471398 PDPR pyruvate dehydrogenase phosphatase regulatory subunit 2 2
MIRT471548 PAX5 paired box 5 2 2
MIRT471848 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472229 NGFR nerve growth factor receptor 2 2
MIRT472548 NACC1 nucleus accumbens associated 1 2 2
MIRT473115 MLXIP MLX interacting protein 2 2
MIRT473212 MINK1 misshapen like kinase 1 2 2
MIRT473590 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474184 LETMD1 LETM1 domain containing 1 2 2
MIRT474671 KLF13 Kruppel like factor 13 2 2
MIRT474854 KHSRP KH-type splicing regulatory protein 2 2
MIRT475152 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT475390 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT475587 HMGXB4 HMG-box containing 4 2 2
MIRT475773 HDLBP high density lipoprotein binding protein 2 2
MIRT477060 FAM210A family with sequence similarity 210 member A 2 2
MIRT477397 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 2 2
MIRT478335 DDN dendrin 2 2
MIRT478609 CTDSP2 CTD small phosphatase 2 2 3
MIRT479135 CNBP CCHC-type zinc finger nucleic acid binding protein 2 4
MIRT480106 CALR calreticulin 2 2
MIRT480416 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480461 C11orf84 chromosome 11 open reading frame 84 2 4
MIRT481268 ATXN7L3 ataxin 7 like 3 2 2
MIRT481413 ASXL1 additional sex combs like 1, transcriptional regulator 2 2
MIRT481743 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482159 AK2 adenylate kinase 2 2 2
MIRT482317 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT482398 AEN apoptosis enhancing nuclease 2 2
MIRT483346 CHRDL1 chordin like 1 2 8
MIRT483596 SLC26A9 solute carrier family 26 member 9 2 2
MIRT483634 NAV2 neuron navigator 2 2 2
MIRT483750 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 2
MIRT484085 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 4
MIRT484225 SUMO1 small ubiquitin-like modifier 1 2 6
MIRT484296 AIP aryl hydrocarbon receptor interacting protein 2 4
MIRT484374 GATA6 GATA binding protein 6 2 12
MIRT484395 ZNF710 zinc finger protein 710 2 4
MIRT484446 RAB7A RAB7A, member RAS oncogene family 2 4
MIRT484590 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT484626 SIX3 SIX homeobox 3 2 6
MIRT484737 ABCC6 ATP binding cassette subfamily C member 6 2 4
MIRT484861 ZNF70 zinc finger protein 70 2 4
MIRT486701 GLYR1 glyoxylate reductase 1 homolog 2 2
MIRT486803 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT487059 C10orf55 chromosome 10 open reading frame 55 2 2
MIRT487077 CLASP1 cytoplasmic linker associated protein 1 2 4
MIRT487148 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487625 C20orf96 chromosome 20 open reading frame 96 2 2
MIRT487710 CDK14 cyclin dependent kinase 14 2 2
MIRT487853 CLSTN1 calsyntenin 1 2 4
MIRT487970 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT488138 GPR107 G protein-coupled receptor 107 2 2
MIRT488208 MAT1A methionine adenosyltransferase 1A 2 2
MIRT488363 PAX2 paired box 2 2 2
MIRT488593 ST7L suppression of tumorigenicity 7 like 2 2
MIRT488985 REXO2 RNA exonuclease 2 2 2
MIRT489068 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT489177 ANKRD45 ankyrin repeat domain 45 2 4
MIRT489327 GNB1L G protein subunit beta 1 like 2 2
MIRT489423 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489808 KRT80 keratin 80 2 4
MIRT489868 ATP2A3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 2 2
MIRT489922 RTKN rhotekin 2 2
MIRT490159 TMEM63C transmembrane protein 63C 2 2
MIRT490312 HOXB13 homeobox B13 2 2
MIRT490771 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT490904 BARHL1 BarH like homeobox 1 2 6
MIRT491072 ACVR1B activin A receptor type 1B 2 4
MIRT491242 KCNA5 potassium voltage-gated channel subfamily A member 5 2 2
MIRT491456 HOXB5 homeobox B5 2 2
MIRT492893 NFIX nuclear factor I X 2 2
MIRT492923 NFAT5 nuclear factor of activated T-cells 5 2 2
MIRT494021 DUSP9 dual specificity phosphatase 9 2 2
MIRT494046 DUSP7 dual specificity phosphatase 7 2 4
MIRT494190 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 2
MIRT494721 ARHGAP31 Rho GTPase activating protein 31 2 2
MIRT494819 AKAP11 A-kinase anchoring protein 11 2 2
MIRT494909 UCP2 uncoupling protein 2 2 2
MIRT495262 CCDC108 cilia and flagella associated protein 65 2 2
MIRT495511 RGS6 regulator of G protein signaling 6 2 2
MIRT496604 TAGLN transgelin 2 2
MIRT498276 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT499031 MAG myelin associated glycoprotein 2 2
MIRT499816 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT500457 ZFP36L1 ZFP36 ring finger protein like 1 2 2
MIRT502340 GIGYF1 GRB10 interacting GYF protein 1 2 4
MIRT503646 POLR2F RNA polymerase II subunit F 2 4
MIRT508000 BCL2L13 BCL2 like 13 2 4
MIRT510802 SEPT2 septin 2 2 6
MIRT511040 NRF1 nuclear respiratory factor 1 2 2
MIRT512930 UBL4A ubiquitin like 4A 2 2
MIRT532005 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT539926 DUSP28 dual specificity phosphatase 28 2 2
MIRT553376 TRIM44 tripartite motif containing 44 2 2
MIRT568790 VPS37D VPS37D, ESCRT-I subunit 2 2
MIRT568827 TRIM67 tripartite motif containing 67 2 2
MIRT568876 LY6H lymphocyte antigen 6 family member H 2 2
MIRT568912 ATP6V1B1 ATPase H+ transporting V1 subunit B1 2 2
MIRT569993 TMEM184A transmembrane protein 184A 2 2
MIRT570225 SLC27A1 solute carrier family 27 member 1 2 2
MIRT570490 THRA thyroid hormone receptor, alpha 2 2
MIRT570541 RPH3A rabphilin 3A 2 2
MIRT570587 OTUD7B OTU deubiquitinase 7B 2 2
MIRT573681 HES6 hes family bHLH transcription factor 6 2 2
MIRT576457 Itga11 integrin alpha 11 2 3
MIRT608254 ITGA11 integrin subunit alpha 11 2 3
MIRT609751 FAM198A family with sequence similarity 198 member A 2 2
MIRT610860 ARSA arylsulfatase A 2 2
MIRT627528 SRP19 signal recognition particle 19 2 4
MIRT627895 OLFML2A olfactomedin like 2A 2 2
MIRT629785 PTDSS2 phosphatidylserine synthase 2 2 2
MIRT647051 C1QTNF6 C1q and TNF related 6 2 2
MIRT649532 GTF3C3 general transcription factor IIIC subunit 3 2 2
MIRT661455 MORC4 MORC family CW-type zinc finger 4 2 2
MIRT667859 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668824 CYLD CYLD lysine 63 deubiquitinase 2 2
MIRT669492 ARL4C ADP ribosylation factor like GTPase 4C 2 2
MIRT670166 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670929 DESI1 desumoylating isopeptidase 1 2 2
MIRT674655 NKRF NFKB repressing factor 2 2
MIRT681452 CIITA class II major histocompatibility complex transactivator 2 2
MIRT681766 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 2
MIRT682033 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT684821 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT686009 NEK4 NIMA related kinase 4 2 2
MIRT691758 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT701938 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT702794 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT705706 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT713377 STK35 serine/threonine kinase 35 2 2
MIRT714792 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT715003 TSPAN11 tetraspanin 11 2 2
MIRT722688 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT755868 ITGA10 integrin subunit alpha 10 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4739 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4739 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4739 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-4739 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-4739 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4739 Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4739 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-4739 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-mir-4739 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4739 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-4739 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4739 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4739 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4739 Leuprorelin/Goserelin + Bicalutamide resistant tissue (prostate cancer)
hsa-miR-4739 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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