miRTarBase - #MIRT453724


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pre-miRNA Information
pre-miRNA hsa-mir-3689d-1   
Genomic Coordinates chr9: 134849609 - 134849682
Description Homo sapiens miR-3689d-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3689d-2   
Genomic Coordinates chr9: 134850277 - 134850356
Description Homo sapiens miR-3689d-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3689d
Sequence 2| GGGAGGUGUGAUCUCACACUCG |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551722268 8 dbSNP
rs143142996 8 dbSNP
rs1236297052 12 dbSNP
rs573148947 14 dbSNP
rs1210004979 14 dbSNP
rs1217460444 14 dbSNP
rs762590109 18 dbSNP
rs574332265 18 dbSNP
rs1164353021 21 dbSNP
rs963741171 21 dbSNP
rs1177416877 22 dbSNP
rs765777344 22 dbSNP
Putative Targets

Gene Information
Gene Symbol RAP1GDS1   
Synonyms GDS1, SmgGDS
Description Rap1 GTPase-GDP dissociation stimulator 1
Transcript NM_001100426   
Other Transcripts NM_001100427 , NM_001100428 , NM_001100429 , NM_001100430 , NM_021159   
Expression
Putative miRNA Targets on RAP1GDS1
3'UTR of RAP1GDS1
(miRNA target sites are highlighted)		 
>RAP1GDS1|NM_001100426|3'UTR
   1 GAACTGCCCGATACACGGCATCATCCCATCTCTAATTTCCCCTCTGTCCTCCATCCAGCGGCTTCTTCCGCTTCATTCTC
  81 TACCATACCACTTGTGCATGCATGTGATGTTCTAATACCAATTGAAGAACCGCTGTAGGTACCTCCCTAATAAGATTTCT
 161 AAACCTATAGTTAGTGTGATCATGACTTTGTCAAAGGCAAGTCTCCACCCATAACCGTTCTCTTGTATTCCTGTTGCTTG
 241 AGCTACATTAAGTAGAATGTGCATGTTGTAGTCCTATGATGATGTAAACTTGGTACTACATAATGACTTGCTCCACACAT
 321 GCAGTAAACTACATAATGATGTACTGGTAAACTAGAAACAAAGAATGCAGCAGGATCTGTCTAGCTTATTAAAGATGAAA
 401 CTGAATTGGAAAAATAGCTCCATTTTTTGGTGCTTGGGAAGCACAGTGACCAAAAAAGTTGTATGGCTGCTTATTCATTA
 481 GTCTTTCCTACTGATGTCAAATCCATGGTACCTAGAGTTAAATAAAATTCCAATGCTCTTACTCTTTAACTTCTGGTTTC
 561 TCCTTTTTCCTTTTTAGACTATTGAAACTGCCACAAACTTGGCAAGACTTTCTGAGGTTTCTGATTCCATATTTAATTGA
 641 CTATTATCAATAGCCTGATATTGAAAAACATTTGTAGTTTTCAGTGTGAAACTAAGGGGTTGAAGAATCACTATTACAAT
 721 CCCTATTACAGAGCATTTCGGGTTTTGCTTGTATTTTAGATTCTGATACATACGCTGTTTCACTCAGGAACTACTTCTAC
 801 CAGTTAATCAGCATTATCCAGCACTTGTCTTTAAAATTCATTTGGCGCTTGTTTGTTTTCAACTGAGGAAATTGAGTATA
 881 GTTCATTGAAGAATGGAATTTTTTTTTTTTTTTTTTTTTTTGCTGTTTTTCATCATTCAGCTAGAAAGTGAGAAGTTTTA
 961 TCTTCCATAGTCCTTTTAAATCTTATGTTAGAACTAGCAGGACGTAGGTGGAAAGATGAAGAAATAAGCTTGTCTAGACT
1041 AAAGAAAGGAAAGCAGGTTATAAAAGCCATAGTAGCCAGTCCAGTTCATTCTGCAGATGGCCCCATACCAATCGCTGTTA
1121 GAGTTTGCCACCTCCACTTTCCCACTGAGAACTGCAGCAATTTTAAAGGATATGAGAAAGCCAAGACTCAAGAGATGAGA
1201 AGACCCCCTTGGCGAAATATAGTGTACTCTTCACTGCCACTGCCACCACCAAATGGGTTTTTAGAGCTTTGAAACACAAT
1281 CTTTGTAAATTAATCAAAACCTCCCTGTGACCCACCTGCCTTCTCCCCATACCCAAATTTGACCACTACTGGCCTAAAAG
1361 GCAAGATGGGCTTCGATATAGAAGGACTGCAAGACAGTAGAAAGGGCTGCCACGGAGGTGACAGTAGCTCCTTCCTCTCC
1441 AACATGTGATGCTACACATCTCTGTGGATAATCTAAGTTGGACTTTTGACTCTAAAACAGCTATAATCCAAGAAAGTTAA
1521 ATTCTAATGGAGGTAAAGAATCTTGACTGATTGTTCCCTTTGATGTCCAAATAAGGGAACTATTGTGAGTACGTATGCTA
1601 CACTTACTATAAGAATGATACTGTTTGTTGTCTTTCTCCTGGGCTGGATAGTGGACTATATTTTATTACAGGCTTTGAAA
1681 GACATCTGTAATGTTGCATATCTGTTCATATTAATAACTTAATAAATAGTATATGAAGCTATAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gcucACA--CUCUAGU-GUGGAGGg 5'
              |||  ||| |:: ||||||| 
Target 5' tcgcTGTTAGAGTTTGCCACCTCCa 3'
 1112 - 1136 156.00 -17.40
2 
miRNA  3' gcucACACU-CUA-GUGUGGAGGg 5'
              ||||| | | ||||:|||: 
Target 5' aacaTGTGATGCTACACATCTCTg 3'
 1441 - 1464 134.00 -14.90
3 
miRNA  3' gcucACACUCUAGUGUGGAGGg 5'
              ||| ||   ::|||||| 
Target 5' ccgcTGT-AG---GTACCTCCc 3'
 130 - 147 130.00 -16.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26664683 2 COSMIC
COSN19728499 17 COSMIC
COSN31590371 39 COSMIC
COSN31559751 56 COSMIC
COSN30516739 69 COSMIC
COSN31510248 71 COSMIC
COSN30171086 90 COSMIC
COSN18971619 230 COSMIC
COSN31596600 458 COSMIC
COSN31962308 563 COSMIC
COSN21073693 590 COSMIC
COSN20100362 908 COSMIC
COSN6509864 923 COSMIC
COSN20091084 924 COSMIC
COSN19499323 1214 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752306137 10 dbSNP
rs79017338 11 dbSNP
rs771478683 13 dbSNP
rs375752513 14 dbSNP
rs1398069714 15 dbSNP
rs1445921075 16 dbSNP
rs746336209 17 dbSNP
rs115060652 18 dbSNP
rs780500056 19 dbSNP
rs749612308 24 dbSNP
rs1170033904 27 dbSNP
rs1362149221 28 dbSNP
rs1215837868 29 dbSNP
rs1255556611 30 dbSNP
rs765722386 32 dbSNP
rs1214838631 35 dbSNP
rs1275501962 36 dbSNP
rs79015512 38 dbSNP
rs774416323 40 dbSNP
rs774949562 42 dbSNP
rs376975796 45 dbSNP
rs1045508758 51 dbSNP
rs772102951 52 dbSNP
rs1422986878 53 dbSNP
rs1417525224 55 dbSNP
rs201769363 57 dbSNP
rs531517161 58 dbSNP
rs1178022733 60 dbSNP
rs905671601 61 dbSNP
rs762882701 70 dbSNP
rs937173506 71 dbSNP
rs1291828049 78 dbSNP
rs200523488 81 dbSNP
rs963590359 81 dbSNP
rs1285866782 83 dbSNP
rs1223998941 92 dbSNP
rs1344573136 95 dbSNP
rs927426868 108 dbSNP
rs1406693792 109 dbSNP
rs1038262384 110 dbSNP
rs370529810 119 dbSNP
rs1346121409 122 dbSNP
rs543615672 132 dbSNP
rs77609098 133 dbSNP
rs1026056126 135 dbSNP
rs945680854 139 dbSNP
rs529136695 144 dbSNP
rs891154487 146 dbSNP
rs925722514 147 dbSNP
rs935734532 148 dbSNP
rs547710289 151 dbSNP
rs1481036837 166 dbSNP
rs755505548 168 dbSNP
rs3831453 169 dbSNP
rs899671109 172 dbSNP
rs779426376 181 dbSNP
rs1268495417 182 dbSNP
rs1484569304 183 dbSNP
rs1008709041 187 dbSNP
rs28739381 197 dbSNP
rs1322476843 217 dbSNP
rs890478272 218 dbSNP
rs532973900 227 dbSNP
rs551047577 228 dbSNP
rs1225172796 230 dbSNP
rs1324034711 230 dbSNP
rs1005261501 238 dbSNP
rs964151279 239 dbSNP
rs979576106 246 dbSNP
rs370053865 250 dbSNP
rs139784465 252 dbSNP
rs963480004 255 dbSNP
rs536769758 259 dbSNP
rs957173944 266 dbSNP
rs1470484371 272 dbSNP
rs988440175 277 dbSNP
rs1421068867 282 dbSNP
rs912872108 286 dbSNP
rs1160431879 298 dbSNP
rs1430868268 299 dbSNP
rs949766440 306 dbSNP
rs549116134 309 dbSNP
rs1428965434 324 dbSNP
rs1460585220 325 dbSNP
rs1468733934 342 dbSNP
rs1205215609 346 dbSNP
rs927039442 348 dbSNP
rs1250603725 351 dbSNP
rs567854948 354 dbSNP
rs1296356448 360 dbSNP
rs958826069 360 dbSNP
rs1245273552 371 dbSNP
rs1380711683 382 dbSNP
rs993113571 383 dbSNP
rs1360407052 391 dbSNP
rs1396209081 396 dbSNP
rs534692474 407 dbSNP
rs201165975 413 dbSNP
rs758757682 423 dbSNP
rs777922746 423 dbSNP
rs191911343 427 dbSNP
rs1370781728 430 dbSNP
rs917462263 444 dbSNP
rs1443440910 452 dbSNP
rs1382862039 461 dbSNP
rs184344204 462 dbSNP
rs1411254381 480 dbSNP
rs1288781921 487 dbSNP
rs1444930451 490 dbSNP
rs189214942 492 dbSNP
rs574362748 494 dbSNP
rs1221624954 508 dbSNP
rs1264991583 509 dbSNP
rs1481504840 511 dbSNP
rs577935757 516 dbSNP
rs753585937 531 dbSNP
rs539068314 534 dbSNP
rs925641073 538 dbSNP
rs1203957802 544 dbSNP
rs1357299360 550 dbSNP
rs1249664035 561 dbSNP
rs557414152 575 dbSNP
rs898367503 579 dbSNP
rs1335441068 582 dbSNP
rs1305281373 590 dbSNP
rs935788558 595 dbSNP
rs929867969 599 dbSNP
rs1397698675 601 dbSNP
rs1303008712 603 dbSNP
rs771213285 617 dbSNP
rs1423312475 619 dbSNP
rs1039396069 623 dbSNP
rs921101494 624 dbSNP
rs1472907863 630 dbSNP
rs1479630429 631 dbSNP
rs1362807363 648 dbSNP
rs781454281 651 dbSNP
rs1420583649 652 dbSNP
rs575762686 662 dbSNP
rs933800651 664 dbSNP
rs1489858454 670 dbSNP
rs1409865086 685 dbSNP
rs891096382 686 dbSNP
rs543153611 687 dbSNP
rs1223385238 689 dbSNP
rs1350076165 699 dbSNP
rs1039728032 700 dbSNP
rs1241460222 702 dbSNP
rs899929802 703 dbSNP
rs1283114987 706 dbSNP
rs192641199 716 dbSNP
rs1308197675 721 dbSNP
rs1304301334 726 dbSNP
rs756965814 734 dbSNP
rs1344461315 735 dbSNP
rs373149808 740 dbSNP
rs778627702 741 dbSNP
rs745400678 747 dbSNP
rs1036810143 772 dbSNP
rs1412431155 772 dbSNP
rs899156678 774 dbSNP
rs1368272955 775 dbSNP
rs1213865832 776 dbSNP
rs1393651143 776 dbSNP
rs1200103928 777 dbSNP
rs1010211629 782 dbSNP
rs1259763320 783 dbSNP
rs535725805 784 dbSNP
rs1351716730 786 dbSNP
rs1293558933 787 dbSNP
rs1262882354 791 dbSNP
rs1222011520 794 dbSNP
rs184235486 794 dbSNP
rs535064983 796 dbSNP
rs745895252 797 dbSNP
rs1206159050 800 dbSNP
rs1291393328 804 dbSNP
rs1430659253 806 dbSNP
rs1325337195 809 dbSNP
rs1489920953 809 dbSNP
rs1225237968 814 dbSNP
rs1388985972 818 dbSNP
rs1335699594 820 dbSNP
rs1247636340 831 dbSNP
rs1468002302 843 dbSNP
rs958875098 844 dbSNP
rs1014866239 847 dbSNP
rs533094843 848 dbSNP
rs1371407072 849 dbSNP
rs1195475516 850 dbSNP
rs1465415949 856 dbSNP
rs1242715265 862 dbSNP
rs556917811 863 dbSNP
rs1264204981 879 dbSNP
rs1214492587 882 dbSNP
rs1338061251 889 dbSNP
rs1416788362 892 dbSNP
rs1228911858 896 dbSNP
rs1450855049 898 dbSNP
rs1196893284 899 dbSNP
rs1243277938 899 dbSNP
rs1313797601 899 dbSNP
rs1342183367 899 dbSNP
rs1384622360 899 dbSNP
rs1436454714 899 dbSNP
rs1491269623 899 dbSNP
rs397994660 899 dbSNP
rs543199019 899 dbSNP
rs562945756 899 dbSNP
rs34986479 900 dbSNP
rs1234972864 901 dbSNP
rs1305969359 902 dbSNP
rs1364610529 903 dbSNP
rs1422332159 904 dbSNP
rs1325300730 905 dbSNP
rs1350209696 906 dbSNP
rs1429947933 907 dbSNP
rs1268292061 908 dbSNP
rs1468885541 908 dbSNP
rs28377105 909 dbSNP
rs1229323230 911 dbSNP
rs977695858 916 dbSNP
rs1211202646 918 dbSNP
rs1290387597 918 dbSNP
rs1323009174 922 dbSNP
rs1346631948 923 dbSNP
rs1223287638 924 dbSNP
rs1230192597 925 dbSNP
rs1179304813 926 dbSNP
rs1291076880 927 dbSNP
rs1446722871 929 dbSNP
rs1254368195 931 dbSNP
rs1214072221 932 dbSNP
rs1455047654 933 dbSNP
rs1244397214 935 dbSNP
rs1177184700 936 dbSNP
rs1465718934 947 dbSNP
rs1032649801 948 dbSNP
rs926987626 953 dbSNP
rs958438500 955 dbSNP
rs975153192 955 dbSNP
rs933725977 959 dbSNP
rs973846025 963 dbSNP
rs919733930 968 dbSNP
rs1399222839 971 dbSNP
rs1442426447 987 dbSNP
rs987060113 999 dbSNP
rs189648410 1005 dbSNP
rs1414278391 1012 dbSNP
rs939966071 1026 dbSNP
rs1038255125 1033 dbSNP
rs575501365 1048 dbSNP
rs548706291 1058 dbSNP
rs912487426 1063 dbSNP
rs1315961398 1066 dbSNP
rs1390803441 1069 dbSNP
rs930603383 1070 dbSNP
rs1336188942 1075 dbSNP
rs943995884 1076 dbSNP
rs879249593 1100 dbSNP
rs780074650 1112 dbSNP
rs1322563607 1114 dbSNP
rs567755153 1115 dbSNP
rs1055792239 1126 dbSNP
rs1039676263 1128 dbSNP
rs894588018 1146 dbSNP
rs899877371 1147 dbSNP
rs1450478992 1190 dbSNP
rs1288402234 1196 dbSNP
rs1428879131 1201 dbSNP
rs1347229469 1204 dbSNP
rs746895638 1214 dbSNP
rs1350223665 1215 dbSNP
rs1053817591 1219 dbSNP
rs903319435 1220 dbSNP
rs999517099 1221 dbSNP
rs546124932 1223 dbSNP
rs892600583 1224 dbSNP
rs1185490341 1225 dbSNP
rs975076007 1225 dbSNP
rs1027924395 1236 dbSNP
rs955337029 1244 dbSNP
rs181252133 1252 dbSNP
rs1203541316 1257 dbSNP
rs1025609793 1258 dbSNP
rs1235280720 1263 dbSNP
rs1312767602 1266 dbSNP
rs186348414 1267 dbSNP
rs1440141268 1279 dbSNP
rs1417351208 1280 dbSNP
rs571874373 1289 dbSNP
rs1002494030 1298 dbSNP
rs1404327797 1300 dbSNP
rs1339183341 1304 dbSNP
rs919871015 1317 dbSNP
rs1469284589 1332 dbSNP
rs937893670 1337 dbSNP
rs1168957506 1340 dbSNP
rs1156644256 1343 dbSNP
rs776403502 1346 dbSNP
rs1034005469 1348 dbSNP
rs1391503659 1352 dbSNP
rs4699634 1354 dbSNP
rs1443670135 1362 dbSNP
rs557353264 1369 dbSNP
rs950188751 1371 dbSNP
rs1202022467 1372 dbSNP
rs1045779469 1374 dbSNP
rs919698264 1375 dbSNP
rs1250654985 1376 dbSNP
rs1202387523 1380 dbSNP
rs557952893 1380 dbSNP
rs540963651 1381 dbSNP
rs17027596 1384 dbSNP
rs1334881048 1396 dbSNP
rs1380931173 1407 dbSNP
rs370231443 1410 dbSNP
rs1335450130 1414 dbSNP
rs562000047 1415 dbSNP
rs1373095325 1425 dbSNP
rs1296904995 1428 dbSNP
rs1432224293 1433 dbSNP
rs1033125913 1435 dbSNP
rs1351412073 1442 dbSNP
rs773356397 1443 dbSNP
rs1423587395 1445 dbSNP
rs893411597 1448 dbSNP
rs982637711 1451 dbSNP
rs1424129786 1455 dbSNP
rs1249620334 1458 dbSNP
rs997051062 1465 dbSNP
rs912424475 1469 dbSNP
rs1223451735 1474 dbSNP
rs1275430043 1483 dbSNP
rs1261878682 1491 dbSNP
rs943950211 1495 dbSNP
rs1267412936 1496 dbSNP
rs1245828205 1501 dbSNP
rs1039620804 1504 dbSNP
rs921240682 1509 dbSNP
rs78451123 1531 dbSNP
rs763123055 1543 dbSNP
rs892556498 1545 dbSNP
rs1351706797 1548 dbSNP
rs1303089513 1551 dbSNP
rs1403715432 1553 dbSNP
rs945493223 1554 dbSNP
rs1278693609 1557 dbSNP
rs1164620756 1581 dbSNP
rs1046553717 1593 dbSNP
rs555028310 1594 dbSNP
rs774973171 1602 dbSNP
rs373224316 1604 dbSNP
rs1002436804 1610 dbSNP
rs112415625 1618 dbSNP
rs1198643822 1622 dbSNP
rs973926521 1622 dbSNP
rs1472828194 1627 dbSNP
rs1489865795 1638 dbSNP
rs1269620726 1644 dbSNP
rs1210625840 1645 dbSNP
rs181519738 1648 dbSNP
rs1485702391 1652 dbSNP
rs894116818 1654 dbSNP
rs1427163239 1659 dbSNP
rs919754885 1659 dbSNP
rs995177523 1666 dbSNP
rs1230555039 1670 dbSNP
rs959310758 1673 dbSNP
rs1283155841 1681 dbSNP
rs1027110274 1687 dbSNP
rs1222281151 1688 dbSNP
rs759931461 1693 dbSNP
rs1173253565 1694 dbSNP
rs1325030697 1699 dbSNP
rs1386981713 1704 dbSNP
rs982971977 1709 dbSNP
rs950058050 1715 dbSNP
rs1046247605 1717 dbSNP
rs1371388713 1721 dbSNP
rs1404798830 1731 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gcucacacucuagugUGGAGGg 5'
                         |||||| 
Target 5' ---------------ACCUCCa 3'
 		1 - 7
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000408927.3 | 3UTR | ACCUCCACUUUCCCACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
231 hsa-miR-3689d Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059166 TXNIP thioredoxin interacting protein 2 4
MIRT080699 KIAA1468 KIAA1468 2 2
MIRT218770 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT278059 KHNYN KH and NYN domain containing 2 2
MIRT345933 EIF4A1 eukaryotic translation initiation factor 4A1 2 2
MIRT366238 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT449689 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT451149 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451266 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT451375 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451570 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451585 HIRIP3 HIRA interacting protein 3 2 2
MIRT451614 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451763 ZNF611 zinc finger protein 611 2 6
MIRT452383 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452573 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452735 PTGES3L prostaglandin E synthase 3 like 2 6
MIRT452867 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452975 CABP4 calcium binding protein 4 2 2
MIRT453215 CERS1 ceramide synthase 1 2 2
MIRT453259 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453449 GLG1 golgi glycoprotein 1 2 2
MIRT453479 PITPNM3 PITPNM family member 3 2 2
MIRT453663 CD207 CD207 molecule 2 6
MIRT453724 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453760 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT454181 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454330 PPARA peroxisome proliferator activated receptor alpha 2 2
MIRT454338 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454427 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454665 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454825 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT455130 TBC1D25 TBC1 domain family member 25 2 2
MIRT455166 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455416 RXRB retinoid X receptor beta 2 2
MIRT455668 GLO1 glyoxalase I 2 2
MIRT455999 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456446 TMEM81 transmembrane protein 81 2 2
MIRT456642 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456728 TMEM239 transmembrane protein 239 2 2
MIRT457131 ASPH aspartate beta-hydroxylase 2 2
MIRT457157 MXRA7 matrix remodeling associated 7 2 2
MIRT457358 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457458 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457619 UPK3BL uroplakin 3B like 1 2 2
MIRT457692 ZNF587 zinc finger protein 587 2 2
MIRT457727 SMOX spermine oxidase 2 2
MIRT457788 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457875 THEM6 thioesterase superfamily member 6 2 4
MIRT457909 ZNF212 zinc finger protein 212 2 2
MIRT458395 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT458496 MARVELD2 MARVEL domain containing 2 2 2
MIRT458544 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT458577 TCOF1 treacle ribosome biogenesis factor 1 2 2
MIRT458732 CES2 carboxylesterase 2 2 2
MIRT458814 ZNF843 zinc finger protein 843 2 2
MIRT458931 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459341 ZNF17 zinc finger protein 17 2 2
MIRT459365 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459572 NLGN2 neuroligin 2 2 2
MIRT460015 DTX3L deltex E3 ubiquitin ligase 3L 2 4
MIRT460144 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460653 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460798 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT461058 KCNK6 potassium two pore domain channel subfamily K member 6 2 4
MIRT461458 SLC19A3 solute carrier family 19 member 3 2 2
MIRT461572 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461927 TNFSF14 TNF superfamily member 14 2 2
MIRT461953 C3 complement C3 2 2
MIRT462278 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT462744 EFNB1 ephrin B1 2 2
MIRT463136 ZNF451 zinc finger protein 451 2 4
MIRT463566 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT463866 WNT7B Wnt family member 7B 2 2
MIRT464326 UST uronyl 2-sulfotransferase 2 2
MIRT464796 UBE2F ubiquitin conjugating enzyme E2 F (putative) 2 2
MIRT465034 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT466207 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT467007 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467029 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT468001 SKI SKI proto-oncogene 2 2
MIRT468031 SIKE1 suppressor of IKBKE 1 2 6
MIRT468575 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT468834 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT468970 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469450 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT470888 PLXND1 plexin D1 2 2
MIRT470953 PKM pyruvate kinase, muscle 2 2
MIRT471828 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472590 NACC1 nucleus accumbens associated 1 2 2
MIRT472805 MTMR12 myotubularin related protein 12 2 2
MIRT472818 MTMR10 myotubularin related protein 10 2 6
MIRT472914 MSN moesin 2 2
MIRT474558 KLHDC3 kelch domain containing 3 2 2
MIRT474716 KIF13A kinesin family member 13A 2 6
MIRT475279 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475300 IFNLR1 interferon lambda receptor 1 2 2
MIRT475759 HDLBP high density lipoprotein binding protein 2 2
MIRT475786 HDGF heparin binding growth factor 2 2
MIRT475933 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476212 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT476238 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 4
MIRT476799 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477988 DNAL1 dynein axonemal light chain 1 2 2
MIRT478317 DDN dendrin 2 2
MIRT479257 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479344 CEP97 centrosomal protein 97 2 2
MIRT479522 CDCA4 cell division cycle associated 4 2 2
MIRT479906 CCDC117 coiled-coil domain containing 117 2 6
MIRT481147 AVL9 AVL9 cell migration associated 2 6
MIRT481735 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482089 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT482389 AEN apoptosis enhancing nuclease 2 2
MIRT483093 TFPI tissue factor pathway inhibitor 2 2
MIRT484246 ANK1 ankyrin 1 2 2
MIRT484342 EPN1 epsin 1 2 4
MIRT489141 C5orf38 chromosome 5 open reading frame 38 2 2
MIRT489163 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489547 SOX11 SRY-box 11 2 4
MIRT489780 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489799 KRT80 keratin 80 2 6
MIRT490535 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492198 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492283 SHISA6 shisa family member 6 2 4
MIRT501059 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT501094 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503870 CBS cystathionine-beta-synthase 2 2
MIRT507981 BCL2L13 BCL2 like 13 2 4
MIRT508125 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT508205 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508385 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT510308 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510462 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512227 ATXN3 ataxin 3 2 8
MIRT512665 STEAP3 STEAP3 metalloreductase 2 2
MIRT514184 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT515053 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515138 ZNF799 zinc finger protein 799 2 4
MIRT515452 ZNF747 zinc finger protein 747 2 2
MIRT515791 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT515905 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT516129 MRPS16 mitochondrial ribosomal protein S16 2 6
MIRT516679 ZNF860 zinc finger protein 860 2 4
MIRT516750 ZNF100 zinc finger protein 100 2 2
MIRT516971 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT517491 NPAP1 nuclear pore associated protein 1 2 2
MIRT517774 PROM2 prominin 2 2 2
MIRT517938 ZNF431 zinc finger protein 431 2 4
MIRT518386 ZNF250 zinc finger protein 250 2 2
MIRT520621 TMEM41B transmembrane protein 41B 2 2
MIRT521028 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521454 RAD51 RAD51 recombinase 2 2
MIRT521564 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT521581 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT522263 NKRF NFKB repressing factor 2 2
MIRT522410 MXI1 MAX interactor 1, dimerization protein 2 2
MIRT522543 MED28 mediator complex subunit 28 2 6
MIRT522915 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523029 IGF1 insulin like growth factor 1 2 2
MIRT523854 ESPL1 extra spindle pole bodies like 1, separase 2 4
MIRT524184 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524520 CDK19 cyclin dependent kinase 19 2 2
MIRT524674 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT530257 ZNF620 zinc finger protein 620 2 2
MIRT540691 BMP3 bone morphogenetic protein 3 2 2
MIRT540976 C17orf85 nuclear cap binding subunit 3 2 2
MIRT545505 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT545631 GGCX gamma-glutamyl carboxylase 2 2
MIRT547358 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT550701 MPL MPL proto-oncogene, thrombopoietin receptor 2 4
MIRT550717 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551203 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT553999 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT561081 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT563523 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT564463 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565233 TRAF6 TNF receptor associated factor 6 2 2
MIRT566618 NKAP NFKB activating protein 2 2
MIRT569527 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569639 QPCT glutaminyl-peptide cyclotransferase 2 2
MIRT570253 SSPN sarcospan 2 2
MIRT570570 OTUD7B OTU deubiquitinase 7B 2 2
MIRT570621 MTF2 metal response element binding transcription factor 2 2 2
MIRT571098 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 2
MIRT575196 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT575554 Cd99 CD99 antigen 2 2
MIRT575634 Gnl3l guanine nucleotide binding protein-like 3 (nucleolar)-like 2 2
MIRT608267 NOP14 NOP14 nucleolar protein 2 2
MIRT609314 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT627670 RPL28 ribosomal protein L28 2 2
MIRT631185 TSPAN14 tetraspanin 14 2 2
MIRT631964 YIPF5 Yip1 domain family member 5 2 2
MIRT632885 GINM1 glycoprotein integral membrane 1 2 2
MIRT642618 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT645609 TSPAN6 tetraspanin 6 2 2
MIRT662227 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662329 MYLK3 myosin light chain kinase 3 2 2
MIRT662725 LRRC3C leucine rich repeat containing 3C 2 2
MIRT665520 USP14 ubiquitin specific peptidase 14 2 2
MIRT666634 RBMS2 RNA binding motif single stranded interacting protein 2 2 2
MIRT668969 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT670925 DESI1 desumoylating isopeptidase 1 2 2
MIRT673939 ZNF500 zinc finger protein 500 2 2
MIRT674675 PLCE1 phospholipase C epsilon 1 2 2
MIRT675230 MAK male germ cell associated kinase 2 2
MIRT680864 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT681047 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681105 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT683553 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684508 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684812 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT685981 CCDC77 coiled-coil domain containing 77 2 2
MIRT686709 TBC1D19 TBC1 domain family member 19 2 2
MIRT686867 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688908 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT691208 KLHL30 kelch like family member 30 2 2
MIRT692298 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT694380 MTA1 metastasis associated 1 2 2
MIRT696497 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT700686 POLR3D RNA polymerase III subunit D 2 2
MIRT701088 PAPOLG poly(A) polymerase gamma 2 2
MIRT703373 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT706189 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT706648 SMIM19 small integral membrane protein 19 2 2
MIRT709466 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709699 DMWD DM1 locus, WD repeat containing 2 2
MIRT710693 LYRM4 LYR motif containing 4 2 2
MIRT713457 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT722409 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
MIRT725391 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT725548 DNMT3A DNA methyltransferase 3 alpha 2 2

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