miRTarBase - #MIRT453810


—
pre-miRNA Information
pre-miRNA hsa-mir-3192   
Genomic Coordinates chr20: 18470615 - 18470691
Description Homo sapiens miR-3192 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3192-5p
Sequence 10| UCUGGGAGGUUGUAGCAGUGGAA |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906254403 3 dbSNP
rs554130490 4 dbSNP
rs773140898 6 dbSNP
rs376614009 11 dbSNP
rs899297329 12 dbSNP
rs1330418015 18 dbSNP
rs1402597660 21 dbSNP
rs995052311 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KBTBD12   
Synonyms KLHDC6
Description kelch repeat and BTB domain containing 12
Transcript NM_207335   
Expression
Putative miRNA Targets on KBTBD12
3'UTR of KBTBD12
(miRNA target sites are highlighted)		 
>KBTBD12|NM_207335|3'UTR
   1 GGTGACCTTGCTGGAGGACCTCCTGCTGTTCTGCAAACAAGGCCTTCAGAACGGAGAGGGCCCACAGCATCTCTGTCATG
  81 CCAGTCATGTGCACTGCATGCGTAGTGGCCTGTGTGTGAAGAAGCAGTGTGTGCTGGGCACTGGGTGGGGAGCATGGGGA
 161 GTCTCCCTTCAGGGACTTCCCAGCCTGATAGGGTAAATAAGACACTACAAAGAAGAGGTGATGACGGCCACAGGAGGGGC
 241 ACAGGGCCACAGGAGAGCAGCAGAGGGAGGGTCTCACTCTGCTGGGGACCCATGAACAGCACTGCCAAGGAGCAGACCTT
 321 TTATTGGGTCCCCAAAAGGATGAGGAGGAAGTGGTCCCATGGGTGCAGTCAATGATGAGTTCATGGAAACAGCCAAGCAA
 401 GGGCCCAGAGACAGAAAGCTCGTGCCTGTCTGCAGTATCCTGGCTGGGCCAGATTGCCTGGGGCACAGGGTTTGTGGTCA
 481 AGGCTGGAAAAGTAGGTTGTAGCTAGATGACCAACGCCTGAAAGAATGAGGAGTTGGACCTGGTCTGTAAGCCAGGGAAT
 561 TGTCTCAAAATCGTGCATTAAGGGAGACTTCTCTCTGTGCTCTGTTCCAGCTTCAGTCTTATAAACACTGACCATTCTCC
 641 TTCAGAATCCCCTTCTACTGAAGCAACGCCACCCAGCAGCAGGGCTAGCTGTACTACCAGCCCCTAACAACCAAGGCACT
 721 CAAGCCAGACCACAGTGGCCAAGAATCCTGCCCTGGGCTGACTCTGTCCGGGACAGGGATGTGGGGTTCTGCAGCCTGGT
 801 CCACTCCGGGGCTGGCAGGGAGTGTCCTGGAGTGGGCTGACCCAGGCTGCCTTTGCCCACCTCTCAGACACATACAACCA
 881 TCTGCAGGGTAGTCCTGGCTGAACAGGACTCGCCCAAGCCACCCAAGCCAGGGACAGAGAAGGCTCTGGCTGAGGACAGG
 961 GGAAGAAGCATCTCCTCCAGCTGCTGCCAACCCCATGGCCCGGCCTTTGCAATAAAGATGGAGCCACCCACTTCAGCCCA
1041 CAATTGAGCATAATCAGAAGACAGTCACTCCCAAAATATATGTTAGAAATAACATTTAAATGACACATGGGAAGTCCGTC
1121 TATCTTACTTCCCGTCTCTAATTCTGGAAGCACAGTGGATTCAATGAGGGCATCTTCATAGCTCTTCTTCAGCAACTTCT
1201 CCAAAGAGTTTCACATTGCACAAGGCTCTTTTGGAAGCAGGAGTGGTCAGTAAATTCAGAGGGAGACAAACCCTAAGTAG
1281 AGACAGCTTTCTTTGGTGCTGAGCTGTGTGATTGTGATGACCGCTAGCCTGTGCCCCTAGGTTCCAGCTGCCCACCAGGC
1361 AGGACAGGCAGGTCTTGCCAAAACTGGAGCCTGTTGGAAACCTATTTCTGCCACCAAGGAGAGGGACCAGGAGACCCAGC
1441 GTAGGTTGGCCCCAAGTAGGCTCAACTCGGGAGGGTGGGGGTCCCGCCTTTCTCTTCGCACTTGTGCCCCAAGTGCACTC
1521 ACAGTACCTGGCATGTGGGTGACCTCTTGGGTGGCCGGCATGGGGCAGTGTTTCTCAATCAGAGGGCCTGGGCCCCGAGC
1601 ACGTCCAGGAATCTGAGTTAAAGTGAGCTTACTCTTTCCCCAGTGGATGATCATGATCTGTGCATTCTTTTTCTTGCTAC
1681 AAAGATGTTCCTCCTAGCTGCTGTGTTGGCTGTCGGCGGCCAGGGTTGAGGACGGCCTCCACAGGGCCTCCACTTCCCTC
1761 CATTCCTCTTCACATAGTCACTCCACCTGCTCCACCTGCTTGAAAAGTCCAGAAAGCTGCCGCGTCTCCCTGGCTCAAGG
1841 AGGCCTTGTTGGCATGTCATGGCACATCTCCTAGATGTTTTGGGTTCAAGATCTGGGTTCCAGCCCCCGCTCTGCTACTT
1921 AGCTAACCATGTGAACTTGGGCAAGATGACCTTTCTAAAGCCTCATTTCCCTCATATGCAGAGTGGGAAGGAAAATATTA
2001 ATACATACTTTATAGGGTTGGTATGAGGATTAAGTGCTGAGCAAAGTGCCTGTGAAATCCTGAAATAATAAGCATGTTTT
2081 AGCTGCCATTATTATCATCACTGTCATTATCATTGCAGTCAGCACTTCCCAAAGCAAGGTGCCCAAAACAGACTCAGTGC
2161 TTTAGGGAAGTGGGGCAGATGTGCATATGGCTTGTGACGGTTCTTTCTTTTTTTTTTTTTTTTTGAGACGGAGTCTCTCT
2241 CTCTCGCCAGGCTGGAGTGCAGTGCAGTGGCACGATCTCAGCCCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTC
2321 CTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGCCCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACG
2401 GGGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCTTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGA
2481 TTACAGGCATGAGCCCCTGCACCTGGCTGAGATGGTTCTTAATTTCCCATACCCTGTTGCTTGGCTCCTCCAGTTGGCGG
2561 CTGAGAGTTAAGCAAGGGTTTACTCGGATCTGAGGCCCCCGATGCCCTCAATGGACACATTCAGGACCCTGTGGCAGCTC
2641 AGCAGAGGCACCTGAGGGTCACGCTAGGTGAGACCATCGCCCGCCTGTGGGAGGCAAGATAAGTGGGTAAACATCATTCC
2721 TGTCTAATGCGAGGTCTGGGCAGTGTCCCAGTGGAACTTTCCAGAGAGTGCCAAGGGAGGACCGAGAAGGGGCATGACCT
2801 CTGCTGGAGCCAGGAGGGCAGTGACCAGGAGCTGGCTTAGCACTGAAGGGAAGCAGGCATCAAGGGCAGGATTTCTCAAA
2881 CTTCTTCTGAGGAATCCCCGAGGTCGAAACCGGTGCTTCACAGATTTCAGATGTCTGATCTTGATTTTTCTTTGATTCCA
2961 TACAACAGATTGCTTGCCTGGGTTAGTGCTTATTTTAAGTTCTTGGTGCTTCTTGTCTGACTTCTGTATTTGCAATTAAA
3041 AACAACATGACCCTCCCCACCTGCAGCCAGATATCGTTAGAAATTCAACTTCGAAATATATTCCTATCACTCCTGTTTTC
3121 ACTTTAATAGAAGGCTGTTGCAGTACTGCATGATGGGCTCTTATAAAACTTCTACTATCTGCTAATTCTTATCTTTGTGA
3201 CAGGATTGTTTGACACTGAGCAAGGAAACACAATAAGGAAGTAATTTGGATGCTAGGCTGGCAGAAGCCTGCAGCTGTCA
3281 ACCACAGCCTGCCCCAGTGTGTTCAACACGGTGGCATTGTTCTCCCTGACTTCATAATGAGCAAATGTTTCACATTTGAA
3361 CTTAAGGAATAAATTTTTACTAATAAAAGATCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aaGGUGACGAU---GUUGGAGGGUCu 5'
            ||||||| |   | :|||||||| 
Target 5' gcCCACTGCAACCTCCGCCTCCCAGg 3'
 2281 - 2306 173.00 -29.50
2 
miRNA  3' aaGGUGACGAUGUUGGAGGGUcu 5'
            |: ||||  ||:|||||||  
Target 5' ttCTCCTGCCTCAGCCTCCCAag 3'
 2316 - 2338 153.00 -25.90
3 
miRNA  3' aagguGACGAUGUU-------GGAGGGUCu 5'
               :||||||||       |||||:|| 
Target 5' ttttcTTGCTACAAAGATGTTCCTCCTAGc 3'
 1669 - 1698 150.00 -21.81
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30733711 2 COSMIC
COSN28829068 7 COSMIC
COSN16129618 23 COSMIC
COSN30139617 38 COSMIC
COSN31511087 38 COSMIC
COSN30466799 50 COSMIC
COSN14030079 54 COSMIC
COSN30118236 84 COSMIC
COSN29846167 159 COSMIC
COSN32176814 343 COSMIC
COSN20090889 632 COSMIC
COSN23668691 1002 COSMIC
COSN26867887 1323 COSMIC
COSN25870568 1345 COSMIC
COSN28423435 1522 COSMIC
COSN4811025 1694 COSMIC
COSN32062690 1701 COSMIC
COSN5865497 1716 COSMIC
COSN26876311 1834 COSMIC
COSN25152509 1859 COSMIC
COSN26602493 2015 COSMIC
COSN26506968 2049 COSMIC
COSN24617566 2099 COSMIC
COSN17657903 2153 COSMIC
COSN32062991 2208 COSMIC
COSN22488418 2461 COSMIC
COSN20213791 2587 COSMIC
COSN9236029 2817 COSMIC
COSN16488028 2836 COSMIC
COSN4912613 2851 COSMIC
COSN9236030 2897 COSMIC
COSN9736445 3339 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1324745860 1 dbSNP
rs1394476080 12 dbSNP
rs1314040546 17 dbSNP
rs1307481859 21 dbSNP
rs34959313 24 dbSNP
rs910829116 38 dbSNP
rs1253400935 42 dbSNP
rs1194976348 53 dbSNP
rs957434186 54 dbSNP
rs879823870 58 dbSNP
rs1249819021 59 dbSNP
rs1010777509 63 dbSNP
rs779982267 81 dbSNP
rs1223349231 91 dbSNP
rs1020778510 102 dbSNP
rs546904851 103 dbSNP
rs1331143693 107 dbSNP
rs765365162 111 dbSNP
rs981969036 116 dbSNP
rs963525180 128 dbSNP
rs927840019 130 dbSNP
rs756375050 132 dbSNP
rs973601325 134 dbSNP
rs146001661 136 dbSNP
rs909571067 136 dbSNP
rs777890437 137 dbSNP
rs929707752 143 dbSNP
rs1468778757 151 dbSNP
rs1180888598 153 dbSNP
rs1223303065 162 dbSNP
rs1417054142 166 dbSNP
rs1047265718 174 dbSNP
rs1248762595 177 dbSNP
rs941114205 180 dbSNP
rs1230876031 189 dbSNP
rs867907321 205 dbSNP
rs72983941 206 dbSNP
rs1208766428 215 dbSNP
rs1350707779 219 dbSNP
rs749342475 226 dbSNP
rs1238830673 227 dbSNP
rs1334338854 231 dbSNP
rs1253113471 243 dbSNP
rs1473870185 246 dbSNP
rs139581070 251 dbSNP
rs1410062273 254 dbSNP
rs1374435159 269 dbSNP
rs1417553703 270 dbSNP
rs1436019050 271 dbSNP
rs905155345 274 dbSNP
rs1000655158 276 dbSNP
rs1365334807 277 dbSNP
rs116428636 280 dbSNP
rs892300515 282 dbSNP
rs1009623604 287 dbSNP
rs1054383427 288 dbSNP
rs1185961133 298 dbSNP
rs1030848663 302 dbSNP
rs954714680 308 dbSNP
rs758558470 312 dbSNP
rs1280023054 314 dbSNP
rs1352992707 319 dbSNP
rs1349081323 322 dbSNP
rs1262902125 325 dbSNP
rs537148524 328 dbSNP
rs376252992 331 dbSNP
rs1007593927 344 dbSNP
rs866455600 357 dbSNP
rs558299989 360 dbSNP
rs1017861658 361 dbSNP
rs1354484805 368 dbSNP
rs1412838142 371 dbSNP
rs893159970 372 dbSNP
rs1292662376 401 dbSNP
rs1316944931 404 dbSNP
rs963663364 415 dbSNP
rs973659950 422 dbSNP
rs576895412 423 dbSNP
rs1306591695 426 dbSNP
rs950968272 429 dbSNP
rs982534798 448 dbSNP
rs1163048212 460 dbSNP
rs1205188748 464 dbSNP
rs1476276971 465 dbSNP
rs1253316550 468 dbSNP
rs571542374 469 dbSNP
rs1445799168 470 dbSNP
rs1264453021 475 dbSNP
rs1186419870 476 dbSNP
rs1257503855 477 dbSNP
rs1473298346 481 dbSNP
rs1209796334 487 dbSNP
rs1334609852 497 dbSNP
rs1270950734 500 dbSNP
rs1234759015 507 dbSNP
rs1356525627 509 dbSNP
rs1003347047 515 dbSNP
rs949049523 516 dbSNP
rs1044751921 517 dbSNP
rs926297332 536 dbSNP
rs1409636642 537 dbSNP
rs990773418 538 dbSNP
rs1169522676 542 dbSNP
rs936555411 543 dbSNP
rs1372476891 548 dbSNP
rs1432999096 563 dbSNP
rs186963428 573 dbSNP
rs1053642099 574 dbSNP
rs1407326835 594 dbSNP
rs755756292 596 dbSNP
rs972446696 601 dbSNP
rs1474451947 603 dbSNP
rs918304189 605 dbSNP
rs1189765485 606 dbSNP
rs1468381113 612 dbSNP
rs1340996369 613 dbSNP
rs1449902941 617 dbSNP
rs1268220614 619 dbSNP
rs144339482 622 dbSNP
rs1215895639 623 dbSNP
rs1451841256 626 dbSNP
rs1228653941 637 dbSNP
rs756084815 638 dbSNP
rs945225270 651 dbSNP
rs1345114029 656 dbSNP
rs145038026 664 dbSNP
rs1051843561 665 dbSNP
rs890569972 667 dbSNP
rs541669378 668 dbSNP
rs1368649274 669 dbSNP
rs1305387613 681 dbSNP
rs1443518516 686 dbSNP
rs1436907216 689 dbSNP
rs1350729042 691 dbSNP
rs1328433939 696 dbSNP
rs114868600 698 dbSNP
rs1372508250 701 dbSNP
rs899178061 703 dbSNP
rs772613362 705 dbSNP
rs1027007208 709 dbSNP
rs1475317670 711 dbSNP
rs950901369 716 dbSNP
rs1189456126 728 dbSNP
rs575676240 740 dbSNP
rs1393752949 743 dbSNP
rs893389773 744 dbSNP
rs1392264988 753 dbSNP
rs1232019025 758 dbSNP
rs1201988494 759 dbSNP
rs1452598134 762 dbSNP
rs1173119030 764 dbSNP
rs1439124592 768 dbSNP
rs146059803 770 dbSNP
rs191876103 771 dbSNP
rs1282345513 778 dbSNP
rs528486168 787 dbSNP
rs970414664 798 dbSNP
rs1372333500 808 dbSNP
rs182731966 809 dbSNP
rs1440290712 816 dbSNP
rs1344372824 823 dbSNP
rs1435629837 825 dbSNP
rs1308735210 835 dbSNP
rs777921538 836 dbSNP
rs13064196 840 dbSNP
rs1178861102 842 dbSNP
rs1232860838 844 dbSNP
rs13063888 848 dbSNP
rs200716600 855 dbSNP
rs1407732461 856 dbSNP
rs1175809074 862 dbSNP
rs1473382140 870 dbSNP
rs913835080 874 dbSNP
rs1252061702 876 dbSNP
rs1186655499 878 dbSNP
rs1346553055 887 dbSNP
rs1484403512 889 dbSNP
rs1257751648 900 dbSNP
rs1210750778 907 dbSNP
rs370967346 910 dbSNP
rs1316206061 911 dbSNP
rs945221087 912 dbSNP
rs550942579 913 dbSNP
rs1464679367 925 dbSNP
rs569414303 927 dbSNP
rs1289183997 932 dbSNP
rs1414315439 933 dbSNP
rs1353627846 936 dbSNP
rs1304601930 943 dbSNP
rs188420137 944 dbSNP
rs1449441373 945 dbSNP
rs143835039 958 dbSNP
rs1467336649 963 dbSNP
rs1157437298 971 dbSNP
rs1459123998 984 dbSNP
rs761320303 993 dbSNP
rs962674249 1001 dbSNP
rs1257660994 1002 dbSNP
rs972797272 1003 dbSNP
rs1485518211 1028 dbSNP
rs1240265778 1030 dbSNP
rs1210404194 1031 dbSNP
rs1465180133 1044 dbSNP
rs1269076011 1045 dbSNP
rs1378254334 1057 dbSNP
rs943404964 1061 dbSNP
rs1214072869 1073 dbSNP
rs541641370 1074 dbSNP
rs1479081751 1080 dbSNP
rs1314967944 1087 dbSNP
rs1156739107 1094 dbSNP
rs374835507 1108 dbSNP
rs1228939023 1109 dbSNP
rs1361915736 1109 dbSNP
rs1287625127 1118 dbSNP
rs552319557 1119 dbSNP
rs77635166 1123 dbSNP
rs1325567665 1132 dbSNP
rs1459572040 1133 dbSNP
rs994869241 1134 dbSNP
rs142449672 1135 dbSNP
rs552964896 1138 dbSNP
rs1427379912 1147 dbSNP
rs1417378103 1158 dbSNP
rs1190420553 1160 dbSNP
rs886732779 1173 dbSNP
rs1014513879 1177 dbSNP
rs151317342 1189 dbSNP
rs942831772 1191 dbSNP
rs1024862447 1207 dbSNP
rs970211665 1218 dbSNP
rs1211537016 1226 dbSNP
rs535716588 1235 dbSNP
rs990296156 1240 dbSNP
rs914779662 1242 dbSNP
rs762964712 1244 dbSNP
rs946346245 1247 dbSNP
rs1002870910 1271 dbSNP
rs980462715 1272 dbSNP
rs73207403 1275 dbSNP
rs1236265281 1276 dbSNP
rs1303163172 1278 dbSNP
rs1439135627 1279 dbSNP
rs1278236651 1285 dbSNP
rs1392487438 1302 dbSNP
rs1293750360 1303 dbSNP
rs907239600 1308 dbSNP
rs1352276563 1312 dbSNP
rs1169866829 1315 dbSNP
rs957686704 1318 dbSNP
rs1329105192 1322 dbSNP
rs867559746 1323 dbSNP
rs575411828 1324 dbSNP
rs1191556065 1325 dbSNP
rs1434680875 1327 dbSNP
rs34778144 1334 dbSNP
rs1269806798 1336 dbSNP
rs945247705 1337 dbSNP
rs1480390323 1340 dbSNP
rs60530081 1341 dbSNP
rs1012060828 1342 dbSNP
rs1209453386 1349 dbSNP
rs754755024 1354 dbSNP
rs943206748 1357 dbSNP
rs1333180124 1361 dbSNP
rs1302348656 1364 dbSNP
rs1390467954 1369 dbSNP
rs1348197114 1372 dbSNP
rs1309370647 1373 dbSNP
rs1429790072 1375 dbSNP
rs1374845250 1376 dbSNP
rs1171666225 1380 dbSNP
rs35967705 1380 dbSNP
rs1467466475 1385 dbSNP
rs1039123709 1388 dbSNP
rs539740877 1390 dbSNP
rs564240231 1391 dbSNP
rs930657009 1395 dbSNP
rs1048151030 1424 dbSNP
rs1249868215 1431 dbSNP
rs1184492849 1438 dbSNP
rs572959083 1441 dbSNP
rs886447355 1442 dbSNP
rs575302731 1447 dbSNP
rs1347674698 1448 dbSNP
rs1025725749 1462 dbSNP
rs1179763837 1464 dbSNP
rs1479041886 1469 dbSNP
rs561745399 1470 dbSNP
rs140604923 1476 dbSNP
rs1161331868 1479 dbSNP
rs986431581 1482 dbSNP
rs564146667 1486 dbSNP
rs563009801 1487 dbSNP
rs1033383427 1495 dbSNP
rs778832939 1498 dbSNP
rs745985021 1499 dbSNP
rs914767702 1500 dbSNP
rs1389128436 1513 dbSNP
rs1021005701 1514 dbSNP
rs533595467 1517 dbSNP
rs1327642812 1518 dbSNP
rs966421454 1523 dbSNP
rs987775288 1534 dbSNP
rs1257441786 1538 dbSNP
rs1204983433 1540 dbSNP
rs1463813420 1550 dbSNP
rs1270346892 1551 dbSNP
rs551958156 1555 dbSNP
rs911840532 1557 dbSNP
rs964531665 1558 dbSNP
rs974612538 1569 dbSNP
rs1244522809 1571 dbSNP
rs1317559830 1576 dbSNP
rs915987284 1578 dbSNP
rs570571508 1579 dbSNP
rs1320903794 1584 dbSNP
rs1358765016 1584 dbSNP
rs1194108337 1588 dbSNP
rs1457997418 1590 dbSNP
rs1273968711 1592 dbSNP
rs79111161 1597 dbSNP
rs1047819479 1598 dbSNP
rs546646080 1603 dbSNP
rs780560560 1604 dbSNP
rs1448130013 1608 dbSNP
rs568031611 1615 dbSNP
rs1422972633 1616 dbSNP
rs535072419 1629 dbSNP
rs891059025 1632 dbSNP
rs1287262265 1633 dbSNP
rs1356426066 1641 dbSNP
rs1269023441 1642 dbSNP
rs1007820235 1643 dbSNP
rs1367221559 1644 dbSNP
rs1188029939 1645 dbSNP
rs1369801793 1654 dbSNP
rs1439865247 1656 dbSNP
rs1349584061 1662 dbSNP
rs193221644 1669 dbSNP
rs963744543 1673 dbSNP
rs1167631091 1677 dbSNP
rs747315350 1683 dbSNP
rs186063267 1689 dbSNP
rs1189652933 1693 dbSNP
rs1022202176 1697 dbSNP
rs1244684612 1710 dbSNP
rs138073676 1712 dbSNP
rs199849097 1715 dbSNP
rs540953143 1716 dbSNP
rs777120492 1718 dbSNP
rs1202348583 1719 dbSNP
rs928844447 1722 dbSNP
rs1354129041 1731 dbSNP
rs1395757572 1734 dbSNP
rs1313921151 1743 dbSNP
rs960309332 1746 dbSNP
rs747431908 1753 dbSNP
rs1408040610 1770 dbSNP
rs1297210708 1782 dbSNP
rs1011043313 1788 dbSNP
rs1169772962 1789 dbSNP
rs915953202 1790 dbSNP
rs942102504 1791 dbSNP
rs1174640324 1796 dbSNP
rs1037758921 1799 dbSNP
rs919339263 1802 dbSNP
rs1179441436 1803 dbSNP
rs929801618 1810 dbSNP
rs1251836210 1820 dbSNP
rs747743402 1822 dbSNP
rs150025178 1823 dbSNP
rs1482905348 1824 dbSNP
rs557518681 1825 dbSNP
rs1287954884 1832 dbSNP
rs77267898 1834 dbSNP
rs1039339581 1840 dbSNP
rs1308645916 1841 dbSNP
rs1447987843 1843 dbSNP
rs1357884750 1845 dbSNP
rs1336614422 1847 dbSNP
rs1415372047 1851 dbSNP
rs1410854950 1853 dbSNP
rs76410858 1855 dbSNP
rs1473330446 1856 dbSNP
rs1187535235 1858 dbSNP
rs1390410109 1859 dbSNP
rs1482262529 1862 dbSNP
rs1018870057 1866 dbSNP
rs1210632228 1868 dbSNP
rs1464260303 1871 dbSNP
rs762584352 1895 dbSNP
rs974663576 1900 dbSNP
rs555378666 1905 dbSNP
rs1357888798 1907 dbSNP
rs951929107 1909 dbSNP
rs147729568 1910 dbSNP
rs1303980305 1911 dbSNP
rs774446546 1913 dbSNP
rs1449290733 1918 dbSNP
rs1388368809 1921 dbSNP
rs1318907440 1931 dbSNP
rs1458509660 1934 dbSNP
rs1404781332 1939 dbSNP
rs142058893 1942 dbSNP
rs960276356 1963 dbSNP
rs981449017 1965 dbSNP
rs1415943820 1972 dbSNP
rs1182393844 1978 dbSNP
rs1448726964 1985 dbSNP
rs1246001250 1986 dbSNP
rs927301211 1991 dbSNP
rs145895419 2001 dbSNP
rs1466460033 2007 dbSNP
rs963372610 2010 dbSNP
rs973830069 2013 dbSNP
rs114921218 2015 dbSNP
rs545658642 2018 dbSNP
rs946264755 2021 dbSNP
rs982561163 2023 dbSNP
rs1295922989 2029 dbSNP
rs1042522589 2030 dbSNP
rs185644141 2041 dbSNP
rs1365552503 2046 dbSNP
rs943948622 2051 dbSNP
rs1311731817 2053 dbSNP
rs1456006261 2057 dbSNP
rs1008652201 2069 dbSNP
rs1351124517 2078 dbSNP
rs1164819783 2082 dbSNP
rs72983942 2083 dbSNP
rs900180385 2084 dbSNP
rs899761199 2089 dbSNP
rs559869440 2102 dbSNP
rs1484732587 2105 dbSNP
rs752582183 2109 dbSNP
rs996068796 2111 dbSNP
rs1262767408 2112 dbSNP
rs115907249 2119 dbSNP
rs951961052 2120 dbSNP
rs1267326709 2127 dbSNP
rs983340323 2138 dbSNP
rs1342121477 2139 dbSNP
rs902916538 2145 dbSNP
rs1231146139 2147 dbSNP
rs1308456792 2159 dbSNP
rs1015422200 2163 dbSNP
rs1384751451 2165 dbSNP
rs375990861 2171 dbSNP
rs568034225 2183 dbSNP
rs1293660779 2186 dbSNP
rs1035853336 2187 dbSNP
rs962208772 2195 dbSNP
rs1170401691 2196 dbSNP
rs1423827441 2198 dbSNP
rs981500017 2199 dbSNP
rs528881838 2200 dbSNP
rs1177417941 2201 dbSNP
rs972756082 2202 dbSNP
rs1431710153 2203 dbSNP
rs148275589 2203 dbSNP
rs201327801 2204 dbSNP
rs1230095127 2208 dbSNP
rs1255797396 2208 dbSNP
rs1340632571 2208 dbSNP
rs933699480 2208 dbSNP
rs1231504477 2215 dbSNP
rs1313633778 2223 dbSNP
rs1455934825 2226 dbSNP
rs1320346529 2227 dbSNP
rs553319946 2231 dbSNP
rs1437524705 2232 dbSNP
rs1300905393 2234 dbSNP
rs1391915638 2234 dbSNP
rs1401381381 2234 dbSNP
rs973415398 2238 dbSNP
rs1379643596 2242 dbSNP
rs1366992732 2246 dbSNP
rs755163283 2247 dbSNP
rs1472346694 2251 dbSNP
rs1409893149 2252 dbSNP
rs1184379272 2257 dbSNP
rs1303245776 2270 dbSNP
rs1438953097 2274 dbSNP
rs937361375 2275 dbSNP
rs1315079624 2287 dbSNP
rs1199168085 2290 dbSNP
rs1484434994 2292 dbSNP
rs990348969 2293 dbSNP
rs1264083478 2297 dbSNP
rs1207720315 2301 dbSNP
rs914862610 2305 dbSNP
rs1227512813 2306 dbSNP
rs1289730590 2312 dbSNP
rs138642433 2313 dbSNP
rs987547508 2323 dbSNP
rs1331007965 2336 dbSNP
rs1211420088 2337 dbSNP
rs1245834355 2340 dbSNP
rs1310467020 2345 dbSNP
rs1488481467 2356 dbSNP
rs1041849360 2357 dbSNP
rs1270051107 2358 dbSNP
rs891295622 2359 dbSNP
rs1161518623 2361 dbSNP
rs944407802 2362 dbSNP
rs1159142119 2363 dbSNP
rs1413147003 2364 dbSNP
rs1186067568 2365 dbSNP
rs1459216931 2369 dbSNP
rs1162865092 2373 dbSNP
rs1349530831 2375 dbSNP
rs569172295 2377 dbSNP
rs1426006697 2378 dbSNP
rs1458431971 2384 dbSNP
rs1244166610 2386 dbSNP
rs1295392931 2400 dbSNP
rs1040163260 2401 dbSNP
rs900149146 2406 dbSNP
rs1288974922 2413 dbSNP
rs1352089081 2414 dbSNP
rs1269621549 2417 dbSNP
rs995874023 2418 dbSNP
rs975230840 2421 dbSNP
rs1027978991 2423 dbSNP
rs1355051406 2426 dbSNP
rs1263093559 2427 dbSNP
rs1246938898 2432 dbSNP
rs1383379111 2435 dbSNP
rs1296666149 2437 dbSNP
rs1432601849 2440 dbSNP
rs887740869 2442 dbSNP
rs539344098 2445 dbSNP
rs190749244 2456 dbSNP
rs1014726914 2457 dbSNP
rs971218264 2461 dbSNP
rs1002889685 2462 dbSNP
rs1042730248 2468 dbSNP
rs1386369111 2470 dbSNP
rs1188404214 2480 dbSNP
rs902881603 2483 dbSNP
rs866012358 2487 dbSNP
rs1250221394 2488 dbSNP
rs1193456577 2492 dbSNP
rs370085895 2494 dbSNP
rs1249092493 2498 dbSNP
rs1482477460 2501 dbSNP
rs566315432 2502 dbSNP
rs1056864245 2505 dbSNP
rs1360126602 2517 dbSNP
rs1273827009 2521 dbSNP
rs1253174123 2532 dbSNP
rs1344057880 2533 dbSNP
rs1270488582 2535 dbSNP
rs1431791120 2540 dbSNP
rs148814002 2541 dbSNP
rs1013059287 2543 dbSNP
rs191367321 2551 dbSNP
rs372608140 2554 dbSNP
rs1428305821 2555 dbSNP
rs571644454 2559 dbSNP
rs1168803186 2560 dbSNP
rs1477521762 2566 dbSNP
rs899397007 2568 dbSNP
rs16839819 2579 dbSNP
rs1429262024 2586 dbSNP
rs914558819 2587 dbSNP
rs1250352621 2596 dbSNP
rs950740850 2601 dbSNP
rs1445474064 2602 dbSNP
rs1008854169 2607 dbSNP
rs544605610 2612 dbSNP
rs964795594 2619 dbSNP
rs978088669 2628 dbSNP
rs912704862 2634 dbSNP
rs1307450782 2637 dbSNP
rs1229665039 2639 dbSNP
rs1356763128 2641 dbSNP
rs1295037009 2644 dbSNP
rs556276551 2647 dbSNP
rs975201050 2652 dbSNP
rs921138367 2654 dbSNP
rs143456056 2655 dbSNP
rs979052159 2658 dbSNP
rs1040136851 2663 dbSNP
rs1179327770 2664 dbSNP
rs1471148779 2669 dbSNP
rs1205272908 2671 dbSNP
rs545699282 2673 dbSNP
rs934292512 2675 dbSNP
rs1209233551 2677 dbSNP
rs1440498521 2678 dbSNP
rs7613218 2679 dbSNP
rs71329979 2680 dbSNP
rs1324473393 2682 dbSNP
rs543193922 2683 dbSNP
rs141793510 2684 dbSNP
rs1376252385 2695 dbSNP
rs1280637954 2699 dbSNP
rs1447874966 2703 dbSNP
rs1044566554 2706 dbSNP
rs899363290 2715 dbSNP
rs1473362824 2725 dbSNP
rs552210888 2731 dbSNP
rs76402922 2732 dbSNP
rs1408002054 2735 dbSNP
rs1036707343 2737 dbSNP
rs550597231 2742 dbSNP
rs73207405 2745 dbSNP
rs1002694739 2746 dbSNP
rs1169323278 2752 dbSNP
rs35959991 2761 dbSNP
rs1034394405 2765 dbSNP
rs1183944907 2770 dbSNP
rs958742285 2784 dbSNP
rs1012082070 2785 dbSNP
rs183961545 2788 dbSNP
rs1333496619 2792 dbSNP
rs967800192 2793 dbSNP
rs575334842 2795 dbSNP
rs551279010 2799 dbSNP
rs1228289497 2810 dbSNP
rs570500065 2817 dbSNP
rs1317673793 2820 dbSNP
rs964764430 2827 dbSNP
rs1449959533 2829 dbSNP
rs566402399 2832 dbSNP
rs996252905 2836 dbSNP
rs1318138120 2845 dbSNP
rs1454958889 2856 dbSNP
rs1345299250 2857 dbSNP
rs533741459 2860 dbSNP
rs1163403506 2863 dbSNP
rs1403581413 2871 dbSNP
rs138723675 2876 dbSNP
rs1164049363 2878 dbSNP
rs1228443815 2881 dbSNP
rs968917762 2887 dbSNP
rs965530098 2900 dbSNP
rs975620674 2901 dbSNP
rs1342321146 2904 dbSNP
rs1217964415 2906 dbSNP
rs769293010 2907 dbSNP
rs1443284161 2911 dbSNP
rs931686560 2912 dbSNP
rs1049300817 2913 dbSNP
rs1464637456 2936 dbSNP
rs924495500 2951 dbSNP
rs1247274730 2959 dbSNP
rs955968069 2963 dbSNP
rs867400349 2964 dbSNP
rs1383584154 2967 dbSNP
rs1392090106 2969 dbSNP
rs992475628 2971 dbSNP
rs940374834 2976 dbSNP
rs1171866455 2998 dbSNP
rs1036274174 3003 dbSNP
rs1303705192 3004 dbSNP
rs1428956388 3007 dbSNP
rs907168501 3025 dbSNP
rs948442958 3036 dbSNP
rs1164263810 3041 dbSNP
rs1430573581 3052 dbSNP
rs1044502491 3058 dbSNP
rs1420460043 3059 dbSNP
rs920358350 3069 dbSNP
rs1002747031 3076 dbSNP
rs1055517536 3077 dbSNP
rs567791273 3093 dbSNP
rs544326540 3094 dbSNP
rs1387687403 3096 dbSNP
rs1435333084 3101 dbSNP
rs537952524 3121 dbSNP
rs146102395 3124 dbSNP
rs773023682 3129 dbSNP
rs1011636272 3142 dbSNP
rs1047903282 3144 dbSNP
rs1250026806 3145 dbSNP
rs116996850 3151 dbSNP
rs903168719 3154 dbSNP
rs999297956 3157 dbSNP
rs1221245581 3159 dbSNP
rs1019878322 3165 dbSNP
rs748752047 3166 dbSNP
rs770573735 3174 dbSNP
rs557543877 3175 dbSNP
rs1009144997 3181 dbSNP
rs1274716590 3199 dbSNP
rs1040347832 3201 dbSNP
rs900479079 3205 dbSNP
rs1462302389 3215 dbSNP
rs35462682 3224 dbSNP
rs996194528 3247 dbSNP
rs1022778885 3250 dbSNP
rs1431564492 3260 dbSNP
rs1200205909 3270 dbSNP
rs975671654 3273 dbSNP
rs1028467024 3278 dbSNP
rs1000425105 3298 dbSNP
rs1209597713 3305 dbSNP
rs953012443 3307 dbSNP
rs758039413 3310 dbSNP
rs1255706508 3311 dbSNP
rs1201422607 3314 dbSNP
rs992777957 3315 dbSNP
rs1198278006 3319 dbSNP
rs1247175836 3326 dbSNP
rs539004682 3333 dbSNP
rs908984613 3339 dbSNP
rs1481360339 3340 dbSNP
rs1333980222 3341 dbSNP
rs1309043954 3348 dbSNP
rs940366156 3349 dbSNP
rs1378208719 3387 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aaGGUGACGAUGUUGGAGGgucu 5'
            ||||||   ||||||||    
Target 5' -cCCACUG---CAACCUCCgccu 3'
 		1 - 19
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aaGGUGACGAU---GUUGGAGGGUCu 5'
            ||||||| |   | :|||||||| 
Target 5' gcCCACUGCAACCUCCGCCUCCCAGg 3'
 		7 - 32
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000405256.1 | 3UTR | CCCACUGCAACCUCCGCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.943 0.11 -1.000 0.5 3 Click to see details
HNSC -0.943 0.11 -1.000 0.5 3 Click to see details
HNSC -0.943 0.11 -1.000 0.5 3 Click to see details
HNSC -0.943 0.11 -1.000 0.5 3 Click to see details
HNSC -0.943 0.11 -1.000 0.5 3 Click to see details
HNSC -0.943 0.11 -1.000 0.5 3 Click to see details
HNSC -0.943 0.11 -1.000 0.5 3 Click to see details
HNSC -0.943 0.11 -1.000 0.5 3 Click to see details
HNSC -0.943 0.11 -1.000 0.5 3 Click to see details
167 hsa-miR-3192-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058548 CTTNBP2NL CTTNBP2 N-terminal like 2 2
MIRT139892 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT207395 MAT2A methionine adenosyltransferase 2A 2 6
MIRT294640 ZNF548 zinc finger protein 548 2 2
MIRT324251 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT441475 BEST3 bestrophin 3 2 2
MIRT445233 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT446763 ZNF491 zinc finger protein 491 2 2
MIRT451003 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 2
MIRT452436 QDPR quinoid dihydropteridine reductase 2 2
MIRT452582 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452950 DISC1 disrupted in schizophrenia 1 2 2
MIRT453309 ZNF394 zinc finger protein 394 2 2
MIRT453810 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT454101 TMEM209 transmembrane protein 209 2 2
MIRT456228 LIX1L limb and CNS expressed 1 like 2 4
MIRT456738 TMEM239 transmembrane protein 239 2 2
MIRT456806 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT457499 SLC35F6 solute carrier family 35 member F6 2 2
MIRT458037 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459041 ZNF490 zinc finger protein 490 2 2
MIRT459135 FADS6 fatty acid desaturase 6 2 2
MIRT460126 CXCL16 C-X-C motif chemokine ligand 16 2 2
MIRT460506 FAM105A family with sequence similarity 105 member A 2 6
MIRT460944 NOA1 nitric oxide associated 1 2 4
MIRT461101 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462641 PHF5A PHD finger protein 5A 2 2
MIRT463584 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT466567 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467090 SRRD SRR1 domain containing 2 2
MIRT471093 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472596 NACC1 nucleus accumbens associated 1 2 2
MIRT473084 MORN4 MORN repeat containing 4 2 2
MIRT475977 GTPBP2 GTP binding protein 2 2 2
MIRT477054 FAM210A family with sequence similarity 210 member A 2 2
MIRT478303 DDX19A DEAD-box helicase 19A 2 4
MIRT478489 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478500 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT478858 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479096 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT479180 CLSPN claspin 2 2
MIRT479215 CLCC1 chloride channel CLIC like 1 2 2
MIRT481176 AVL9 AVL9 cell migration associated 2 6
MIRT483032 KHSRP KH-type splicing regulatory protein 2 4
MIRT485150 RASL10B RAS like family 10 member B 2 2
MIRT486104 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486319 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT489443 IFNLR1 interferon lambda receptor 1 2 2
MIRT489585 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489702 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490184 TMEM63C transmembrane protein 63C 2 2
MIRT491211 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491276 DHX40 DEAH-box helicase 40 2 2
MIRT495162 CNGA2 cyclic nucleotide gated channel alpha 2 2 4
MIRT495222 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT496820 CHRNB2 cholinergic receptor nicotinic beta 2 subunit 2 2
MIRT498602 KRT8 keratin 8 2 2
MIRT500003 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT502065 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT508197 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508477 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT509635 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT511039 NRF1 nuclear respiratory factor 1 2 2
MIRT516684 ZNF860 zinc finger protein 860 2 4
MIRT518394 ZNF250 zinc finger protein 250 2 2
MIRT518907 CDC14B cell division cycle 14B 2 2
MIRT520502 TRAM2 translocation associated membrane protein 2 2 6
MIRT521459 RAD51 RAD51 recombinase 2 2
MIRT522354 NCKIPSD NCK interacting protein with SH3 domain 2 4
MIRT522594 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT523267 HIST1H2AE histone cluster 1 H2A family member e 2 2
MIRT523532 GLUL glutamate-ammonia ligase 2 4
MIRT524186 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT526842 PHC1 polyhomeotic homolog 1 2 2
MIRT528729 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT540695 BMP3 bone morphogenetic protein 3 2 2
MIRT544483 TRIM4 tripartite motif containing 4 2 2
MIRT551566 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT563619 ZNF277 zinc finger protein 277 2 2
MIRT564467 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565031 VAV2 vav guanine nucleotide exchange factor 2 2 2
MIRT570294 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT572932 VDAC2 voltage dependent anion channel 2 2 2
MIRT573501 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573675 HES6 hes family bHLH transcription factor 6 2 2
MIRT609619 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT611966 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT613930 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT617733 ATCAY ATCAY, caytaxin 2 4
MIRT618878 MBL2 mannose binding lectin 2 2 2
MIRT627590 SHROOM3 shroom family member 3 2 2
MIRT628516 ZNF878 zinc finger protein 878 2 2
MIRT633964 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634530 NEGR1 neuronal growth regulator 1 2 2
MIRT635455 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT636412 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT639672 PPEF2 protein phosphatase with EF-hand domain 2 2 6
MIRT642667 RGS6 regulator of G protein signaling 6 2 2
MIRT644080 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT647318 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647942 RNF152 ring finger protein 152 2 2
MIRT648687 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT648817 ZNF689 zinc finger protein 689 2 2
MIRT650347 TREM1 triggering receptor expressed on myeloid cells 1 2 2
MIRT650374 MOCS3 molybdenum cofactor synthesis 3 2 4
MIRT655935 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT663778 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT664297 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT665842 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT668929 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669673 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669907 KIAA0754 KIAA0754 2 4
MIRT670248 TRIM13 tripartite motif containing 13 2 2
MIRT670368 ULBP3 UL16 binding protein 3 2 4
MIRT670642 BVES blood vessel epicardial substance 2 2
MIRT670749 HOOK3 hook microtubule tethering protein 3 2 2
MIRT671184 ZNF891 zinc finger protein 891 2 2
MIRT673946 ZNF500 zinc finger protein 500 2 2
MIRT674682 PLCE1 phospholipase C epsilon 1 2 2
MIRT677912 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678876 FAM118A family with sequence similarity 118 member A 2 2
MIRT679528 RAB36 RAB36, member RAS oncogene family 2 2
MIRT680589 ZNF573 zinc finger protein 573 2 2
MIRT680650 KIAA1456 KIAA1456 2 2
MIRT681149 INTS7 integrator complex subunit 7 2 2
MIRT681177 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681234 DUSP19 dual specificity phosphatase 19 2 2
MIRT681626 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681643 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT681926 KAT7 lysine acetyltransferase 7 2 2
MIRT682050 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT682156 SMS spermine synthase 2 2
MIRT683555 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684304 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT684458 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT685986 CCDC77 coiled-coil domain containing 77 2 2
MIRT686782 AZF1 azoospermia factor 1 2 2
MIRT687329 OSMR oncostatin M receptor 2 2
MIRT687629 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT688792 CCNB1 cyclin B1 2 2
MIRT689756 PRR13 proline rich 13 2 2
MIRT690823 SGSM2 small G protein signaling modulator 2 2 2
MIRT691310 ZNF681 zinc finger protein 681 2 2
MIRT692676 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT693508 MOB3A MOB kinase activator 3A 2 2
MIRT694657 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694889 ZNF417 zinc finger protein 417 2 2
MIRT695740 ZNF117 zinc finger protein 117 2 2
MIRT697101 GPKOW G-patch domain and KOW motifs 2 2
MIRT698968 SPAST spastin 2 2
MIRT700379 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT703930 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT706234 SYT15 synaptotagmin 15 2 2
MIRT706494 SEPT6 septin 6 2 2
MIRT710451 BTNL3 butyrophilin like 3 2 2
MIRT711684 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT711997 F9 coagulation factor IX 2 2
MIRT712727 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713111 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT713156 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT713440 AJAP1 adherens junctions associated protein 1 2 2
MIRT713830 NUP98 nucleoporin 98 2 2
MIRT714979 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717411 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT718433 ZNF85 zinc finger protein 85 2 2
MIRT720575 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT725098 TMEM120B transmembrane protein 120B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3192 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3192 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3192 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3192-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3192-5p Platinum 23939 resistant tissue
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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