miRTarBase - #MIRT453966


—
pre-miRNA Information
pre-miRNA hsa-mir-3650   
Genomic Coordinates chr5: 38557502 - 38557561
Description Homo sapiens miR-3650 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3650
Sequence 4| AGGUGUGUCUGUAGAGUCC |22
Evidence Experimental
Experiments 454
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ATP13A4   
Synonyms -
Description ATPase 13A4
Transcript NM_032279   
Expression
Putative miRNA Targets on ATP13A4
3'UTR of ATP13A4
(miRNA target sites are highlighted)		 
>ATP13A4|NM_032279|3'UTR
   1 AGGACATGTGATATCCAAGTTGATATTACAGAGAAACAATGACAAAAGGGACCAGTTTCATTGATTTTAAGAAATGAGAC
  81 TCTTGTAACATCAGCTGGAGTTTTGGGGCTACCTATCAAATCATGGTGACAAACTAAAGTCTGTTTGATAAAATACTGTC
 161 TACAGAGAAGAACATTGACCCAGAAGAGTGCTTTCCTCTTGGCTTCTGAAGGTATTAGAGGCATTCAGTGAAGGCAAGAA
 241 TGGGCCAAGAATTTCTATGGGCCAAGAGACAAGCAGGCTAAAGGGGAAAAATATGTGATCTTTCCTCTTAGGACAGGACA
 321 ATACTTTCCTTTTTATAAAAATGAGTTGAGGGGAAGTAGTACTGTGTATACTCACGGAGTTGTAATTTTTGAATTTTTAC
 401 TTCATCGATGGAAAAACTAATGCGTGGGAAACATTACACCAATCTTTACTGTCTGGGTTCCTTTTCTCTGTAGTACTTTT
 481 CAGATTTGAGGCTTTTTCTTCTGTTTCTGGCCTTACCCAACATATTGTTAAGGATAAGCTTAGCCTATGCTGCAATAAAA
 561 AACAACTCTCAGATATCAGTGCCTTAACACACAAGTGCTTCTTTCGTGATCCAGGTGACACTCTGGAACTGCCATTCTTA
 641 CAGCAGTGACTGCTTCAACCTGATGGCTCCATCAGCTCGATGCAAGGACTGTGTGTTGACTGTGATGGGGGAAGGAATAG
 721 ACTGGAGATCACGTGTGGGCTCTTCACTGCCTCACCCCAAAAGTGGCACACATTGCTTTCCCTACTCATATCTCATTAGT
 801 CAAGGATTTGGCCAGGGAGCTGGAAAGTGCAGTCTCCTGTGTTTAGGGATGCTTCATGGGCTTATGAGCTGTCACTACAC
 881 AGGGCCCCATGCTTAGAAGGTCCCCACACTTGGCTTTAACACTCTGCTGTTTCCATCTTAAAATTCTTAATTTTTGAACA
 961 GGGGTCCCCATATTTTCATTTTGTACCAGGCCCCACAAATGATAGAGTTGGTCTGGAACGTAGTCCTGGGAAGGAGAGGA
1041 AAATAACAGATCAGAAAGCACGAGTGCTGTCCACTACAGCCCACTTTTCCTAACCCCAGTAACTTATCCTATGTTTTAGG
1121 AATCTCTCATGTCACATGGCCAACTCCAGAAATTTTCACTCCTCTGCTTTATTATTTTTGAGAAACATTAGTCTCATGCT
1201 ACAGCATTATATGGCACTATTGATGGGAGTTCTTACACAACTAGTACATTTTTTTTTTAAAGTTTGTGGCTTGAGTTTCC
1281 AGAAAACTAAAATTGTCCTTATTTTGTCACTATTACAATTTGGTTATATTTGATTTGTTCAGCACAAGGAAGACTCAGGT
1361 TTCTGTTACCTCAGGAGACAACACTGAACTCTAGGAGCACACCTACATATAATATTTTAAGGCAAAAGCAAAATTTGTAT
1441 TATGAGCATCAAATCCTAGGTGAATGTTCTGATCAGGGGATAAGTGTCCTGGCCCAGGCTGGCTTTGGAACTTATCAATA
1521 GCATTTGCAAGCATTCCTTCCCCCTAACTGAGCTCTTGAGCATGGCTGATGGCTCTATGATTGCAGCTGATTCTAGGAAC
1601 ATGGTGTCTCCCAGCCATGAGGGTACCCTGTTACTTCTGGTTTTAAAATAGGGCGTGAAGATATTTTAGTGTTTCAAGAC
1681 TGCAGAATCACTGTCTTTTTTGGTACAGAAAGAAATGTTTCCTTTTGCAAAGCCAGCCTCAGCAATGATATGGCAGTTCT
1761 GAATGTCCTTCTCTAAAAGTGTTTCTCATTTTCCAAAAGTAGAGGGTTGTAGGCAGGGGCAAGCTAGAGATGGTCTGTGA
1841 CCTAGTCATGAGCAAGATCAGCCTGCACAGTTCATACTTAAATGTGCCCTTTGCTAAGTGCATTCACCTCCACTAACTCA
1921 CCTGAATGGTACCAATTGTCCCATGACTGAACAAGGAAGGGCTTATCATCTCCACCATACAGATGAGAAAGCTGAGATTC
2001 AGTAATGGCAAGAGCAGATCTAGGCCTCAAATACAGATCTTCTGAGCAAACCTTATATTGCTGCCAAATACTTCCAAATT
2081 CCAGAGTTCCAGCAGGGCAGGTTGCTTAGTGTGATCTCACAGTCAAGCAAAGAATGGGCAACCCTTTGCTAATACCAGGC
2161 CCTCTGTTCAAATGAATGCCAGGCATCCTGCCAGGCCTGGGCTAGAGGTGTATTAAAAACAAAACAAAACAAAACAAAAA
2241 AATGATTGTCTGTCTTTCTGAGACTTTGAGTTGCTCTTGCCTTGATCCTAAGTGATTCTATCACTAGCAAAGGCTGGCAG
2321 GGAACAGGAAGAAAAGAATCTAGTCCTCCACTAGTCAAGCAGCCATAAAATCTTTGGGAAAAGAGACTCATTTTGAAGAC
2401 TGTATTCCTGGGATTAACTACATCTTAGAAGCAGTAATTGAAGGAACAGGGAGTGCCCAGCCTGGAAAGAAAACAGTCAG
2481 GGGACTGTGAAGGGTTTTCCTGAGAAAGAAGGATCCTACTTGTGCCAGGTGGCATGAGAAGGCAAAATCAGGACAAATGG
2561 GTAAAGATCACAGTGGGGATGGCTTCAGGCCATCTGCCCTAACCACTGTCCTAACAGCCAGCACTGATAGCAGTGGAATG
2641 TACTCTAGGACATTGGAGGAACAAGTGGCTATTCAAGGGCCAAGTAGAGAAGGAAGTCAAGTATCAGATGAAACTCAATT
2721 ACCTGCAAGATCTCTTTCAAGCTTGATACACCCAGTGTCTCAGTCTTATGCTGTGATGTGAACCTTTTTTTTTTTTTTTT
2801 TTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTAGAGTGCAGTGGCACAATCTCGGCTCACTGCCAGCTCCGCCTCC
2881 CGGATTCACACCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTCTGCCACCATGCCCGGCTAATTTTTTG
2961 TATTTTTAGTAGAGATGGGGTTTCATCATGTTAGCCAGGGTGGTTTCAATCTCCTGACCTCGTGATCCGCCCGCCTCGGC
3041 CTCCCAAAGTGCCGGGATTACAGACATGAGCCACCAGATGTGAACTATTTTCTACTACTACCCACACAGAATACCAGACA
3121 GACACTCATGGGAGGATGGGCTCTGGAGGGAGGGCTCCCAGCCTTGTCAGATCCGATTGTGTGGACATATAGACTCAATT
3201 GCCCTGTACCTTGAAAGGGGACCCCTAATGGAGATAAGATCCTAGGAAAGAGGGGCAGAGTAGGGGTCCTGATTGTCAGA
3281 TTGAAGCTGGGGTAATACTTCTGATTTGTGAATTTTCTTAAAGAGAGGTGTTAAAAAACTTTGCATGAAAGAGCGTGGGA
3361 GAGTGCCCTAAACTTGAGGGCGGAGCAACCTGTTATCAATACACTTTCTTGAGCAGAGTCTGAAGGAGAAACGAACACAG
3441 TCACATAGTCCAAATCATTTGAGACGGTGCCCTGTATGTTCATCTCAAGGCATCTAGCTCTTACCCACAGAGAACCGTGA
3521 CTCTGGGCTTCCCTCACTAAATATGTCTGTGACATCTGTATCCTTATGTGCTTATGGAAATGTTCACATACACACCTGCA
3601 GATGTGATGACTGAAAAAAACGATTATTTATTCAGAGCTTTGTATTTAGTTTATGCTATAATAAATTCAGTTGTTATAAA
3681 AATCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccUGAGAUGUCUGUGUGGa 5'
            ::|| ||| ||||||| 
Target 5' atGTTC-ACATACACACCt 3'
 3580 - 3597 156.00 -15.50
2 
miRNA  3' ccUGAGAUGUCUGUGUGGa 5'
            |||||| : :|||||| 
Target 5' gaACTCTAGGAGCACACCt 3'
 1386 - 1404 149.00 -19.20
3 
miRNA  3' ccuGAG-AUGU-----CUGUGUGGa 5'
             ||| | ||     ||:||||| 
Target 5' gatCTCTTTCAAGCTTGATACACCc 3'
 2729 - 2753 132.00 -13.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30457548 3 COSMIC
COSN31554547 4 COSMIC
COSN30523936 5 COSMIC
COSN30483535 10 COSMIC
COSN5042349 12 COSMIC
COSN30495497 22 COSMIC
COSN31537100 31 COSMIC
COSN30455250 49 COSMIC
COSN30449530 50 COSMIC
COSN30461499 59 COSMIC
COSN20099546 81 COSMIC
COSN31537113 86 COSMIC
COSN30132243 94 COSMIC
COSN30647911 101 COSMIC
COSN30111482 114 COSMIC
COSN21220909 117 COSMIC
COSN30458588 122 COSMIC
COSN31605604 170 COSMIC
COSN32064119 306 COSMIC
COSN31959900 481 COSMIC
COSN7599263 507 COSMIC
COSN15668479 529 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1485982767 3 dbSNP
rs1279564858 8 dbSNP
rs1207879383 12 dbSNP
rs1309058278 15 dbSNP
rs773797352 16 dbSNP
rs1295944673 20 dbSNP
rs763261627 22 dbSNP
rs776543217 42 dbSNP
rs768275117 43 dbSNP
rs775612526 44 dbSNP
rs1279505241 45 dbSNP
rs1294650862 51 dbSNP
rs182989226 54 dbSNP
rs1201630848 60 dbSNP
rs558936298 61 dbSNP
rs1458013063 64 dbSNP
rs142743757 82 dbSNP
rs772517938 82 dbSNP
rs1334214436 90 dbSNP
rs774643886 92 dbSNP
rs1436665058 96 dbSNP
rs768745354 108 dbSNP
rs1024298190 124 dbSNP
rs576532013 126 dbSNP
rs1010877283 127 dbSNP
rs1335273014 130 dbSNP
rs1452306752 132 dbSNP
rs191195657 134 dbSNP
rs894040684 135 dbSNP
rs1049993201 148 dbSNP
rs1370676979 155 dbSNP
rs886542134 161 dbSNP
rs549895049 174 dbSNP
rs1333861708 175 dbSNP
rs1334200237 176 dbSNP
rs901379661 179 dbSNP
rs1041611360 196 dbSNP
rs775708336 207 dbSNP
rs1347152011 226 dbSNP
rs536614528 227 dbSNP
rs1221794311 228 dbSNP
rs1262398672 230 dbSNP
rs567676917 233 dbSNP
rs1200286068 241 dbSNP
rs547823734 244 dbSNP
rs1437019285 251 dbSNP
rs1048073679 258 dbSNP
rs942575656 259 dbSNP
rs112513628 267 dbSNP
rs910907314 268 dbSNP
rs1465501271 271 dbSNP
rs535623641 277 dbSNP
rs1466664321 280 dbSNP
rs1050801664 285 dbSNP
rs527919336 286 dbSNP
rs1405780065 294 dbSNP
rs930996476 297 dbSNP
rs185892865 298 dbSNP
rs1203447520 317 dbSNP
rs770481806 321 dbSNP
rs1347661604 327 dbSNP
rs960233865 334 dbSNP
rs988514502 343 dbSNP
rs746391065 350 dbSNP
rs1267102315 358 dbSNP
rs1195425950 366 dbSNP
rs781736571 370 dbSNP
rs113777176 375 dbSNP
rs957575672 376 dbSNP
rs926108403 378 dbSNP
rs1489755989 379 dbSNP
rs551685674 381 dbSNP
rs928455937 404 dbSNP
rs1320831980 405 dbSNP
rs531866884 406 dbSNP
rs980351561 407 dbSNP
rs970295189 416 dbSNP
rs1371879723 419 dbSNP
rs1024952640 422 dbSNP
rs977673661 423 dbSNP
rs562804741 424 dbSNP
rs1319355496 433 dbSNP
rs1379974170 439 dbSNP
rs1302779973 441 dbSNP
rs139597201 442 dbSNP
rs1384016449 443 dbSNP
rs994919754 448 dbSNP
rs1325837849 450 dbSNP
rs183504942 451 dbSNP
rs1285809541 455 dbSNP
rs560827472 456 dbSNP
rs958063509 465 dbSNP
rs1221204648 478 dbSNP
rs191117692 492 dbSNP
rs1028988925 500 dbSNP
rs1006705571 502 dbSNP
rs1202893977 503 dbSNP
rs1260230253 510 dbSNP
rs1428501389 517 dbSNP
rs1213255402 525 dbSNP
rs866798966 533 dbSNP
rs1443177196 539 dbSNP
rs572318797 547 dbSNP
rs1051420699 551 dbSNP
rs1450379170 552 dbSNP
rs1287251348 555 dbSNP
rs901429101 570 dbSNP
rs1384162092 572 dbSNP
rs1396471184 579 dbSNP
rs1041189067 580 dbSNP
rs1338637360 582 dbSNP
rs1380243326 586 dbSNP
rs1389730571 590 dbSNP
rs73890445 592 dbSNP
rs886844986 595 dbSNP
rs1048208441 600 dbSNP
rs1318403691 605 dbSNP
rs66940628 606 dbSNP
rs915542421 609 dbSNP
rs1210423645 626 dbSNP
rs576422044 633 dbSNP
rs1490165866 634 dbSNP
rs1483291314 641 dbSNP
rs1201464165 648 dbSNP
rs556394805 649 dbSNP
rs1460226710 656 dbSNP
rs374526671 664 dbSNP
rs1055878352 666 dbSNP
rs536255499 669 dbSNP
rs935742461 671 dbSNP
rs1381140587 676 dbSNP
rs938585571 679 dbSNP
rs567610627 684 dbSNP
rs980255212 687 dbSNP
rs1363241050 691 dbSNP
rs1466637982 693 dbSNP
rs1207003717 698 dbSNP
rs948859533 700 dbSNP
rs928563752 701 dbSNP
rs1331855914 703 dbSNP
rs1375065183 715 dbSNP
rs917513556 717 dbSNP
rs1305866005 720 dbSNP
rs993478883 721 dbSNP
rs977261673 727 dbSNP
rs75093317 732 dbSNP
rs1322109648 733 dbSNP
rs1269182630 735 dbSNP
rs1239102366 741 dbSNP
rs1481833427 756 dbSNP
rs1224616980 757 dbSNP
rs945910943 767 dbSNP
rs1433814394 772 dbSNP
rs1332261573 777 dbSNP
rs1026299676 780 dbSNP
rs913978487 788 dbSNP
rs989561778 819 dbSNP
rs1171304339 822 dbSNP
rs1355998396 823 dbSNP
rs963469211 824 dbSNP
rs958117289 835 dbSNP
rs1344149842 838 dbSNP
rs1280890385 856 dbSNP
rs1344329643 866 dbSNP
rs1310263523 878 dbSNP
rs1028289601 881 dbSNP
rs1309592452 887 dbSNP
rs1430759762 890 dbSNP
rs1250949962 899 dbSNP
rs1490590953 900 dbSNP
rs975832241 902 dbSNP
rs1224807386 903 dbSNP
rs1266777774 906 dbSNP
rs1480158420 908 dbSNP
rs778674059 913 dbSNP
rs965639664 914 dbSNP
rs1020315095 921 dbSNP
rs1426482758 924 dbSNP
rs1004376614 934 dbSNP
rs1017662139 935 dbSNP
rs1006736737 949 dbSNP
rs1426095306 959 dbSNP
rs566123991 960 dbSNP
rs887313407 963 dbSNP
rs1027160145 964 dbSNP
rs1467765109 967 dbSNP
rs1213168252 970 dbSNP
rs1364763942 970 dbSNP
rs1295394547 988 dbSNP
rs540234414 991 dbSNP
rs1360617458 994 dbSNP
rs995223392 1002 dbSNP
rs894231213 1004 dbSNP
rs372271130 1005 dbSNP
rs534006350 1011 dbSNP
rs938368306 1019 dbSNP
rs186323855 1020 dbSNP
rs1490195462 1021 dbSNP
rs1042059095 1028 dbSNP
rs1243751370 1029 dbSNP
rs1480095302 1046 dbSNP
rs754552847 1061 dbSNP
rs891491607 1064 dbSNP
rs1266619813 1069 dbSNP
rs1052734864 1084 dbSNP
rs1161243563 1087 dbSNP
rs1384273284 1088 dbSNP
rs1184113067 1096 dbSNP
rs551573996 1101 dbSNP
rs1419753657 1107 dbSNP
rs1319788814 1108 dbSNP
rs1347457082 1109 dbSNP
rs1429151561 1111 dbSNP
rs1288806102 1113 dbSNP
rs753408928 1113 dbSNP
rs1248664627 1114 dbSNP
rs1313149554 1123 dbSNP
rs935642890 1129 dbSNP
rs914366823 1131 dbSNP
rs10439973 1136 dbSNP
rs1286353442 1155 dbSNP
rs1315213181 1170 dbSNP
rs1214927022 1179 dbSNP
rs147707007 1180 dbSNP
rs563040731 1185 dbSNP
rs1243708606 1191 dbSNP
rs549609779 1192 dbSNP
rs538969858 1196 dbSNP
rs1044089333 1212 dbSNP
rs1271867324 1214 dbSNP
rs1242133395 1216 dbSNP
rs1470348427 1221 dbSNP
rs948947839 1224 dbSNP
rs1405086304 1229 dbSNP
rs529695308 1231 dbSNP
rs921367353 1232 dbSNP
rs975426213 1235 dbSNP
rs1256116171 1240 dbSNP
rs1335210173 1244 dbSNP
rs993118154 1246 dbSNP
rs74931798 1248 dbSNP
rs571578657 1249 dbSNP
rs560937151 1258 dbSNP
rs368191413 1259 dbSNP
rs66487431 1259 dbSNP
rs963340571 1259 dbSNP
rs973404886 1259 dbSNP
rs1290684235 1260 dbSNP
rs982993666 1261 dbSNP
rs531416115 1262 dbSNP
rs986619219 1262 dbSNP
rs1335607315 1263 dbSNP
rs951618431 1264 dbSNP
rs1327265802 1265 dbSNP
rs1183470414 1266 dbSNP
rs1230849041 1271 dbSNP
rs181623555 1273 dbSNP
rs146323907 1280 dbSNP
rs1430590563 1283 dbSNP
rs894204497 1293 dbSNP
rs1172085113 1315 dbSNP
rs1174928316 1316 dbSNP
rs761719168 1346 dbSNP
rs1410911520 1354 dbSNP
rs891734956 1358 dbSNP
rs1334257799 1359 dbSNP
rs545245266 1360 dbSNP
rs1427113520 1367 dbSNP
rs1002537171 1371 dbSNP
rs1284081367 1384 dbSNP
rs906904075 1385 dbSNP
rs566719875 1396 dbSNP
rs779185818 1398 dbSNP
rs1221547551 1407 dbSNP
rs1179356569 1410 dbSNP
rs1443809232 1411 dbSNP
rs556194803 1416 dbSNP
rs1270417855 1422 dbSNP
rs536542913 1427 dbSNP
rs1222576477 1436 dbSNP
rs141970743 1437 dbSNP
rs1479183691 1438 dbSNP
rs1320728618 1441 dbSNP
rs999823822 1443 dbSNP
rs1229622247 1449 dbSNP
rs1350557555 1458 dbSNP
rs1278200773 1479 dbSNP
rs1170068775 1480 dbSNP
rs189796147 1486 dbSNP
rs1341325736 1490 dbSNP
rs1336245402 1492 dbSNP
rs1429276825 1493 dbSNP
rs1303994055 1495 dbSNP
rs1450556335 1496 dbSNP
rs904187751 1497 dbSNP
rs533898013 1498 dbSNP
rs1390994685 1501 dbSNP
rs1300462339 1502 dbSNP
rs1327004904 1505 dbSNP
rs1321291340 1519 dbSNP
rs1229320672 1524 dbSNP
rs1268266779 1529 dbSNP
rs1054195378 1531 dbSNP
rs1044162634 1533 dbSNP
rs1457742272 1541 dbSNP
rs62285691 1543 dbSNP
rs557781782 1544 dbSNP
rs921349920 1556 dbSNP
rs1267261769 1565 dbSNP
rs538057677 1575 dbSNP
rs944137376 1577 dbSNP
rs1371644583 1597 dbSNP
rs912517994 1601 dbSNP
rs1164405268 1604 dbSNP
rs1387354512 1607 dbSNP
rs1422793840 1620 dbSNP
rs1057486856 1621 dbSNP
rs982792401 1626 dbSNP
rs1383783577 1628 dbSNP
rs1316161211 1638 dbSNP
rs1364147035 1640 dbSNP
rs62285690 1649 dbSNP
rs1316693392 1652 dbSNP
rs1037950834 1653 dbSNP
rs549461202 1654 dbSNP
rs1208790490 1655 dbSNP
rs1446950195 1665 dbSNP
rs763073343 1667 dbSNP
rs974228128 1675 dbSNP
rs75421965 1679 dbSNP
rs755983459 1690 dbSNP
rs567187083 1691 dbSNP
rs1464700864 1692 dbSNP
rs1314776754 1694 dbSNP
rs1244140749 1695 dbSNP
rs910538092 1696 dbSNP
rs1164347730 1701 dbSNP
rs200288590 1702 dbSNP
rs954974792 1719 dbSNP
rs1430058090 1725 dbSNP
rs1344539019 1733 dbSNP
rs1316066323 1740 dbSNP
rs923359712 1742 dbSNP
rs971179642 1746 dbSNP
rs1019879315 1749 dbSNP
rs1395033696 1750 dbSNP
rs1407004878 1751 dbSNP
rs1307294153 1754 dbSNP
rs1336971095 1755 dbSNP
rs1236300321 1763 dbSNP
rs143393970 1776 dbSNP
rs1329135653 1784 dbSNP
rs527250429 1787 dbSNP
rs759648400 1788 dbSNP
rs1265312766 1801 dbSNP
rs893036874 1806 dbSNP
rs1181458613 1807 dbSNP
rs1251567647 1809 dbSNP
rs537948901 1814 dbSNP
rs1162667667 1820 dbSNP
rs559753821 1827 dbSNP
rs1470197727 1830 dbSNP
rs1178518985 1833 dbSNP
rs1403575273 1842 dbSNP
rs1465383034 1843 dbSNP
rs1298360677 1847 dbSNP
rs1398239137 1852 dbSNP
rs1389157286 1863 dbSNP
rs1391583626 1867 dbSNP
rs1287237323 1869 dbSNP
rs1188671903 1870 dbSNP
rs1224596349 1872 dbSNP
rs1474754616 1874 dbSNP
rs1240877719 1877 dbSNP
rs1054334465 1883 dbSNP
rs777298099 1896 dbSNP
rs1209919695 1899 dbSNP
rs1252097182 1902 dbSNP
rs1481780582 1904 dbSNP
rs968377892 1906 dbSNP
rs1251104393 1910 dbSNP
rs900292647 1913 dbSNP
rs1201453435 1922 dbSNP
rs564976049 1923 dbSNP
rs62285689 1928 dbSNP
rs1012554592 1931 dbSNP
rs201994799 1933 dbSNP
rs3832194 1934 dbSNP
rs397795602 1934 dbSNP
rs1220688977 1935 dbSNP
rs1460092580 1938 dbSNP
rs944090523 1941 dbSNP
rs531448148 1948 dbSNP
rs149638911 1955 dbSNP
rs1214077338 1961 dbSNP
rs767337899 1968 dbSNP
rs929986809 1973 dbSNP
rs186743836 1976 dbSNP
rs1219003585 1979 dbSNP
rs974363948 1981 dbSNP
rs867592362 1982 dbSNP
rs1346049047 1983 dbSNP
rs747438557 1991 dbSNP
rs1274232989 2013 dbSNP
rs958990995 2014 dbSNP
rs927421003 2021 dbSNP
rs981648152 2036 dbSNP
rs1170633989 2037 dbSNP
rs971531771 2038 dbSNP
rs1408995537 2042 dbSNP
rs1488152845 2046 dbSNP
rs1187042285 2074 dbSNP
rs1421314051 2086 dbSNP
rs1416852257 2105 dbSNP
rs567425342 2110 dbSNP
rs1167526024 2113 dbSNP
rs1192397131 2113 dbSNP
rs756917080 2125 dbSNP
rs573893573 2129 dbSNP
rs1161205273 2135 dbSNP
rs1009844444 2143 dbSNP
rs933299270 2155 dbSNP
rs3732525 2161 dbSNP
rs988232971 2166 dbSNP
rs955910479 2182 dbSNP
rs1032641646 2188 dbSNP
rs1360506396 2197 dbSNP
rs996461300 2205 dbSNP
rs1287729470 2207 dbSNP
rs1321209626 2210 dbSNP
rs540232758 2215 dbSNP
rs978676898 2217 dbSNP
rs1204176381 2223 dbSNP
rs1305957427 2230 dbSNP
rs1280890190 2235 dbSNP
rs1219841000 2237 dbSNP
rs879335447 2240 dbSNP
rs968619090 2240 dbSNP
rs1412386057 2243 dbSNP
rs1400817255 2248 dbSNP
rs900427973 2250 dbSNP
rs1347511030 2256 dbSNP
rs1455959641 2264 dbSNP
rs763633874 2265 dbSNP
rs1402881723 2266 dbSNP
rs755646518 2267 dbSNP
rs1298526826 2269 dbSNP
rs1340835447 2270 dbSNP
rs762401637 2275 dbSNP
rs1282664849 2279 dbSNP
rs1378478956 2281 dbSNP
rs1224443835 2282 dbSNP
rs891201184 2284 dbSNP
rs1047214946 2290 dbSNP
rs1208036775 2300 dbSNP
rs1035888489 2312 dbSNP
rs993229461 2316 dbSNP
rs929960615 2318 dbSNP
rs1441076034 2321 dbSNP
rs898025553 2324 dbSNP
rs1236581289 2328 dbSNP
rs1037888583 2365 dbSNP
rs1178485678 2372 dbSNP
rs1352377989 2376 dbSNP
rs777137346 2379 dbSNP
rs1006372976 2383 dbSNP
rs181233171 2383 dbSNP
rs1038381638 2389 dbSNP
rs1159087810 2394 dbSNP
rs1469830368 2400 dbSNP
rs565243392 2401 dbSNP
rs1332400244 2417 dbSNP
rs889371110 2421 dbSNP
rs1281290196 2423 dbSNP
rs1050662627 2429 dbSNP
rs67932887 2432 dbSNP
rs1325385890 2433 dbSNP
rs1198570041 2437 dbSNP
rs1251742938 2438 dbSNP
rs1176966664 2440 dbSNP
rs1206186681 2443 dbSNP
rs189582893 2444 dbSNP
rs981998997 2449 dbSNP
rs925341581 2455 dbSNP
rs978583604 2460 dbSNP
rs1460879404 2464 dbSNP
rs1479196050 2469 dbSNP
rs1171260210 2475 dbSNP
rs947182413 2479 dbSNP
rs757138261 2481 dbSNP
rs991419404 2490 dbSNP
rs537944339 2494 dbSNP
rs1368745950 2511 dbSNP
rs569380312 2515 dbSNP
rs912980227 2519 dbSNP
rs959999294 2521 dbSNP
rs79029804 2523 dbSNP
rs79881408 2524 dbSNP
rs77991154 2526 dbSNP
rs1331093567 2529 dbSNP
rs988480284 2534 dbSNP
rs1230783480 2535 dbSNP
rs971697142 2552 dbSNP
rs1222944623 2553 dbSNP
rs1370766674 2560 dbSNP
rs961811196 2580 dbSNP
rs1349301135 2582 dbSNP
rs1272078751 2597 dbSNP
rs1482423571 2599 dbSNP
rs1015980418 2608 dbSNP
rs879703521 2611 dbSNP
rs1453766935 2615 dbSNP
rs79387060 2623 dbSNP
rs889285448 2629 dbSNP
rs1170687177 2630 dbSNP
rs1029699836 2633 dbSNP
rs138296271 2642 dbSNP
rs1334085080 2647 dbSNP
rs1459331536 2649 dbSNP
rs1032610463 2652 dbSNP
rs75111008 2653 dbSNP
rs1322834623 2662 dbSNP
rs147084936 2664 dbSNP
rs141260784 2668 dbSNP
rs1416242992 2676 dbSNP
rs1184497272 2679 dbSNP
rs1293253185 2699 dbSNP
rs1018890915 2705 dbSNP
rs1009136091 2706 dbSNP
rs1052400431 2718 dbSNP
rs571254198 2726 dbSNP
rs1447920372 2727 dbSNP
rs1190974807 2730 dbSNP
rs13433687 2735 dbSNP
rs551548994 2746 dbSNP
rs1449015939 2751 dbSNP
rs1184450588 2754 dbSNP
rs866049458 2754 dbSNP
rs1456481931 2755 dbSNP
rs66997084 2762 dbSNP
rs994221673 2772 dbSNP
rs1458604097 2774 dbSNP
rs562408290 2775 dbSNP
rs1364209286 2776 dbSNP
rs1261197260 2777 dbSNP
rs1338162349 2780 dbSNP
rs1243498478 2781 dbSNP
rs1214809359 2782 dbSNP
rs1043757338 2783 dbSNP
rs113321727 2784 dbSNP
rs1038754533 2785 dbSNP
rs1266559728 2785 dbSNP
rs184443646 2786 dbSNP
rs1246312512 2787 dbSNP
rs1381560607 2791 dbSNP
rs1312309660 2793 dbSNP
rs937383373 2797 dbSNP
rs1436598178 2800 dbSNP
rs1156887401 2807 dbSNP
rs1187002150 2807 dbSNP
rs1287033649 2807 dbSNP
rs1295769175 2807 dbSNP
rs1364307191 2807 dbSNP
rs1387587084 2807 dbSNP
rs1404968119 2807 dbSNP
rs1422109897 2807 dbSNP
rs1470162239 2807 dbSNP
rs1473499345 2807 dbSNP
rs386398926 2807 dbSNP
rs71177402 2807 dbSNP
rs1174836403 2808 dbSNP
rs1234480349 2808 dbSNP
rs1469619801 2809 dbSNP
rs1257967408 2815 dbSNP
rs147804162 2819 dbSNP
rs1200096939 2821 dbSNP
rs1251273270 2824 dbSNP
rs1046015569 2828 dbSNP
rs1484095582 2829 dbSNP
rs191155221 2833 dbSNP
rs1480634809 2837 dbSNP
rs1452240709 2838 dbSNP
rs991843004 2844 dbSNP
rs1375729197 2845 dbSNP
rs13434016 2847 dbSNP
rs988950897 2849 dbSNP
rs1371821662 2857 dbSNP
rs1407497090 2858 dbSNP
rs35667734 2860 dbSNP
rs1306690854 2862 dbSNP
rs1350475773 2867 dbSNP
rs935727788 2873 dbSNP
rs765505716 2874 dbSNP
rs974799481 2875 dbSNP
rs1232758086 2877 dbSNP
rs1275672601 2880 dbSNP
rs1444288334 2881 dbSNP
rs1383566661 2882 dbSNP
rs1250986940 2891 dbSNP
rs928517932 2900 dbSNP
rs964439816 2901 dbSNP
rs1192868016 2907 dbSNP
rs1429127456 2921 dbSNP
rs1264935646 2926 dbSNP
rs1432412781 2933 dbSNP
rs1170666948 2935 dbSNP
rs1391681837 2936 dbSNP
rs1427243545 2940 dbSNP
rs1261113846 2944 dbSNP
rs1019279795 2945 dbSNP
rs184535678 2946 dbSNP
rs192289130 2947 dbSNP
rs1365891390 2948 dbSNP
rs796183892 2948 dbSNP
rs1386615246 2954 dbSNP
rs1298593643 2969 dbSNP
rs1026124962 2971 dbSNP
rs1226473952 2974 dbSNP
rs1273941357 2985 dbSNP
rs1322425765 2986 dbSNP
rs1223616589 2988 dbSNP
rs1263650689 2995 dbSNP
rs748362953 2996 dbSNP
rs898563799 2998 dbSNP
rs1017048901 2999 dbSNP
rs1447216707 3004 dbSNP
rs1001934129 3014 dbSNP
rs905825240 3015 dbSNP
rs1046153845 3019 dbSNP
rs1358321382 3021 dbSNP
rs145837443 3022 dbSNP
rs892064261 3028 dbSNP
rs533109125 3029 dbSNP
rs1294232812 3032 dbSNP
rs936200357 3033 dbSNP
rs1381064998 3037 dbSNP
rs925683279 3038 dbSNP
rs1304156960 3047 dbSNP
rs1424380811 3053 dbSNP
rs1038820225 3054 dbSNP
rs776819177 3055 dbSNP
rs1269724644 3064 dbSNP
rs1463396160 3066 dbSNP
rs1170655547 3070 dbSNP
rs1462683810 3080 dbSNP
rs1473484908 3085 dbSNP
rs911530460 3087 dbSNP
rs903861324 3099 dbSNP
rs1475131915 3102 dbSNP
rs879902930 3102 dbSNP
rs1391245263 3103 dbSNP
rs1168390618 3107 dbSNP
rs1043814153 3108 dbSNP
rs1012318601 3125 dbSNP
rs895191716 3137 dbSNP
rs1450294299 3138 dbSNP
rs1301098270 3139 dbSNP
rs1378551826 3150 dbSNP
rs1228879827 3155 dbSNP
rs188346568 3158 dbSNP
rs1055648464 3166 dbSNP
rs1326787949 3167 dbSNP
rs140718326 3173 dbSNP
rs938473028 3174 dbSNP
rs1278885164 3187 dbSNP
rs1270905972 3188 dbSNP
rs1443716772 3190 dbSNP
rs1207598614 3196 dbSNP
rs1236329831 3200 dbSNP
rs183404907 3201 dbSNP
rs1483112511 3213 dbSNP
rs1183499353 3217 dbSNP
rs919200103 3220 dbSNP
rs973221583 3225 dbSNP
rs1414903796 3229 dbSNP
rs766974113 3230 dbSNP
rs1158422446 3236 dbSNP
rs761069804 3241 dbSNP
rs1017431889 3247 dbSNP
rs1001591659 3251 dbSNP
rs773707516 3255 dbSNP
rs1024284870 3260 dbSNP
rs1197256479 3262 dbSNP
rs1309759596 3274 dbSNP
rs1348628747 3275 dbSNP
rs1409135794 3286 dbSNP
rs1036270335 3292 dbSNP
rs1014231634 3299 dbSNP
rs1346884856 3310 dbSNP
rs1250321651 3325 dbSNP
rs572554614 3327 dbSNP
rs940380120 3337 dbSNP
rs908862537 3342 dbSNP
rs1342231930 3345 dbSNP
rs1224551803 3347 dbSNP
rs768874844 3351 dbSNP
rs892033433 3353 dbSNP
rs554273116 3354 dbSNP
rs748466941 3355 dbSNP
rs775174850 3356 dbSNP
rs1344094408 3357 dbSNP
rs904653117 3365 dbSNP
rs1247607021 3366 dbSNP
rs953170859 3380 dbSNP
rs921654094 3381 dbSNP
rs1039621096 3382 dbSNP
rs976279953 3383 dbSNP
rs1171014748 3384 dbSNP
rs1394767131 3386 dbSNP
rs1395978296 3388 dbSNP
rs1170491593 3389 dbSNP
rs1368803461 3396 dbSNP
rs1409247837 3397 dbSNP
rs1166259145 3400 dbSNP
rs966577285 3402 dbSNP
rs1434097878 3405 dbSNP
rs943106153 3425 dbSNP
rs2280476 3432 dbSNP
rs578036301 3433 dbSNP
rs1230169804 3443 dbSNP
rs1177133511 3445 dbSNP
rs1480069399 3448 dbSNP
rs1340873622 3457 dbSNP
rs550839688 3465 dbSNP
rs150919094 3466 dbSNP
rs1438073584 3467 dbSNP
rs1171350386 3473 dbSNP
rs142733847 3473 dbSNP
rs1197280177 3476 dbSNP
rs963633294 3481 dbSNP
rs540135953 3484 dbSNP
rs1193579549 3490 dbSNP
rs895232512 3494 dbSNP
rs1056915469 3497 dbSNP
rs926448199 3498 dbSNP
rs1322007535 3499 dbSNP
rs907030639 3516 dbSNP
rs780555660 3517 dbSNP
rs940577618 3520 dbSNP
rs909101604 3537 dbSNP
rs1389124615 3542 dbSNP
rs1436767970 3543 dbSNP
rs937192974 3554 dbSNP
rs1363790976 3560 dbSNP
rs1327028221 3562 dbSNP
rs1454766412 3563 dbSNP
rs1048739473 3569 dbSNP
rs931602260 3571 dbSNP
rs1208591595 3575 dbSNP
rs981030992 3586 dbSNP
rs1407005878 3587 dbSNP
rs556225657 3591 dbSNP
rs756070925 3593 dbSNP
rs1465653290 3602 dbSNP
rs1210784353 3607 dbSNP
rs1246471477 3609 dbSNP
rs1336131075 3613 dbSNP
rs1188422424 3615 dbSNP
rs970148491 3618 dbSNP
rs1370277764 3619 dbSNP
rs1471738343 3620 dbSNP
rs1024370748 3621 dbSNP
rs1164155907 3621 dbSNP
rs1412387501 3622 dbSNP
rs1403758439 3630 dbSNP
rs1014199145 3633 dbSNP
rs1318097082 3638 dbSNP
rs377391918 3643 dbSNP
rs1383874992 3654 dbSNP
rs921711224 3655 dbSNP
rs956076857 3656 dbSNP
rs756734439 3658 dbSNP
rs192639951 3672 dbSNP
rs966205026 3676 dbSNP
rs1231951251 3677 dbSNP
rs924097698 3682 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 84239.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ccugagaugucuGUGUGGa 5'
                      |||||| 
Target 5' ---------auuCACACCa 3'
 		1 - 10
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 84239.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000400270.2 | 3UTR | AUUCACACCAUUCUCCUGCCUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000400270.2 | 3UTR | AUUCACACCAUUCUCCUGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000400270.2 | 3UTR | AUUCACACCAUUCUCCUGCCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000400270.2 | 3UTR | AUUCACACCAUUCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
121 hsa-miR-3650 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075340 SF3B3 splicing factor 3b subunit 3 2 2
MIRT302326 ACP1 acid phosphatase 1, soluble 2 2
MIRT395212 PRKCB protein kinase C beta 2 2
MIRT404446 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT449647 CASS4 Cas scaffolding protein family member 4 2 2
MIRT451262 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452113 IFITM1 interferon induced transmembrane protein 1 2 2
MIRT452723 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 4
MIRT452982 CABP4 calcium binding protein 4 2 2
MIRT453966 ATP13A4 ATPase 13A4 2 6
MIRT454112 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT454343 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454405 AKAP5 A-kinase anchoring protein 5 2 2
MIRT456224 LIX1L limb and CNS expressed 1 like 2 4
MIRT456232 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 6
MIRT458505 GSG2 histone H3 associated protein kinase 2 6
MIRT461653 G6PC glucose-6-phosphatase catalytic subunit 2 2
MIRT461933 TNFSF14 TNF superfamily member 14 2 2
MIRT462734 EFNB1 ephrin B1 2 2
MIRT463817 XKR4 XK related 4 2 2
MIRT463833 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT464928 TXLNA taxilin alpha 2 2
MIRT465874 TMEM43 transmembrane protein 43 2 4
MIRT467753 SLC35F1 solute carrier family 35 member F1 2 4
MIRT468688 SEC22C SEC22 homolog C, vesicle trafficking protein 2 4
MIRT469453 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT471931 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT474715 KIF13A kinesin family member 13A 2 6
MIRT475396 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT475681 HHIPL1 HHIP like 1 2 2
MIRT477016 FAM217B family with sequence similarity 217 member B 2 2
MIRT477073 FAM208A family with sequence similarity 208 member A 2 4
MIRT478172 DENND5B DENN domain containing 5B 2 2
MIRT478995 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479700 CCNT1 cyclin T1 2 2
MIRT482784 STIM1 stromal interaction molecule 1 2 2
MIRT488682 RAD23B RAD23 homolog B, nucleotide excision repair protein 2 2
MIRT493179 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT494243 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT508775 GSG1 germ cell associated 1 2 2
MIRT509555 ACTG1 actin gamma 1 2 4
MIRT510305 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510976 PFN2 profilin 2 2 6
MIRT517860 NCAPD2 non-SMC condensin I complex subunit D2 2 4
MIRT519451 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT521340 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT522478 MIPOL1 mirror-image polydactyly 1 2 4
MIRT522584 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT525629 NUP93 nucleoporin 93 2 4
MIRT529240 PORCN porcupine O-acyltransferase 2 2
MIRT529788 AP4S1 adaptor related protein complex 4 sigma 1 subunit 2 2
MIRT530567 ABHD15 abhydrolase domain containing 15 2 2
MIRT535784 MTRNR2L11 MT-RNR2-like 11 2 6
MIRT536819 HMGA1 high mobility group AT-hook 1 2 2
MIRT541615 C11orf31 selenoprotein H 2 2
MIRT546188 TPD52 tumor protein D52 2 4
MIRT546201 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT547466 MBNL3 muscleblind like splicing regulator 3 2 8
MIRT550570 SLC2A5 solute carrier family 2 member 5 2 2
MIRT550778 DBT dihydrolipoamide branched chain transacylase E2 2 4
MIRT550987 RBM38 RNA binding motif protein 38 2 2
MIRT554735 RHOC ras homolog family member C 2 2
MIRT555390 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556871 IVNS1ABP influenza virus NS1A binding protein 2 2
MIRT557530 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT564850 ZBED3 zinc finger BED-type containing 3 2 2
MIRT569426 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569479 CTSE cathepsin E 2 2
MIRT569653 SLC23A1 solute carrier family 23 member 1 2 2
MIRT570089 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 4
MIRT574074 RNF152 ring finger protein 152 2 2
MIRT575199 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT606929 CDK15 cyclin dependent kinase 15 2 2
MIRT606959 BDH1 3-hydroxybutyrate dehydrogenase 1 2 6
MIRT606968 FAM117B family with sequence similarity 117 member B 2 2
MIRT606975 ONECUT3 one cut homeobox 3 2 2
MIRT607002 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT607129 MARCH4 membrane associated ring-CH-type finger 4 2 2
MIRT607185 SPRY4 sprouty RTK signaling antagonist 4 2 4
MIRT607547 GLI2 GLI family zinc finger 2 2 2
MIRT607617 TMEM130 transmembrane protein 130 2 4
MIRT607638 FAM69C family with sequence similarity 69 member C 2 2
MIRT607690 MAPK10 mitogen-activated protein kinase 10 2 2
MIRT607810 SPATA6 spermatogenesis associated 6 2 2
MIRT607945 SSX2 SSX family member 2 2 4
MIRT608018 CARNS1 carnosine synthase 1 2 2
MIRT608066 SSX2B SSX family member 2B 2 4
MIRT608833 PTCHD1 patched domain containing 1 2 4
MIRT608857 TCTE1 t-complex-associated-testis-expressed 1 2 2
MIRT608863 BCAS1 breast carcinoma amplified sequence 1 2 2
MIRT608871 NR2E1 nuclear receptor subfamily 2 group E member 1 2 2
MIRT608949 CYP7B1 cytochrome P450 family 7 subfamily B member 1 2 2
MIRT608994 PYGO1 pygopus family PHD finger 1 2 2
MIRT609060 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT609066 IGLON5 IgLON family member 5 2 4
MIRT610789 KLK2 kallikrein related peptidase 2 2 2
MIRT620567 WBSCR27 methyltransferase like 27 2 4
MIRT624028 EN2 engrailed homeobox 2 2 2
MIRT626738 TXNL4B thioredoxin like 4B 2 2
MIRT627162 ZNF48 zinc finger protein 48 2 2
MIRT627198 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT631188 TSPAN14 tetraspanin 14 2 2
MIRT631967 YIPF5 Yip1 domain family member 5 2 2
MIRT632888 GINM1 glycoprotein integral membrane 1 2 2
MIRT636752 SLC16A5 solute carrier family 16 member 5 2 2
MIRT637769 PDLIM3 PDZ and LIM domain 3 2 2
MIRT640735 FAM83C family with sequence similarity 83 member C 2 2
MIRT645611 TSPAN6 tetraspanin 6 2 2
MIRT653679 SLC25A36 solute carrier family 25 member 36 2 2
MIRT654119 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT655110 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT662230 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662332 MYLK3 myosin light chain kinase 3 2 2
MIRT662730 LRRC3C leucine rich repeat containing 3C 2 2
MIRT668622 EEA1 early endosome antigen 1 2 2
MIRT687702 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT691171 APOL6 apolipoprotein L6 2 2
MIRT701450 NFIC nuclear factor I C 2 2
MIRT705501 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT706893 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT707402 KCNK12 potassium two pore domain channel subfamily K member 12 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3650 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3650 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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