miRTarBase - #MIRT454417


—
pre-miRNA Information
pre-miRNA hsa-mir-3150b   
Genomic Coordinates chr8: 95072911 - 95072996
Description Homo sapiens miR-3150b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3150b-3p
Sequence 53| UGAGGAGAUCGUCGAGGUUGG |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 15 8 - 95072930 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1256195314 2 dbSNP
rs1484412577 6 dbSNP
rs1412064940 14 dbSNP
rs1185404105 16 dbSNP
rs886360149 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SEPT6   
Synonyms SEP2, SEPT2
Description septin 6
Transcript NM_145799   
Other Transcripts NM_015129 , NM_145800 , NM_145802   
Expression
Putative miRNA Targets on SEPT6
3'UTR of SEPT6
(miRNA target sites are highlighted)		 
>SEPT6|NM_145799|3'UTR
   1 CTCTGCTGTTTGCTGCATGCTGCATGAGACCCAGGGTCCTGTTTGGGCTTCCTGTAGACACCCTTTTCCTGCGCAACAGA
  81 GCTGGGCCTCCCTTTCTCTAATTTCCCCCTTAACATGCCTGGGGGGCATACAATCCAACCCGCGCCCTCTCCTCTCTTCC
 161 TGCCAAGGTTTATAGAAACCTGAGAATCTGAGGGTGATGTCTGGCCGCTGGTCAAGAAGCCAACAGTCATGTGGCTCGCA
 241 GATGCATCCTGCATCCCAGTCCCCCTCCCAGCACCCCCAGCCATCCCCCCTGTCTTCCCCCACATCTTTGCCAGAGGTGT
 321 GACATGGTCAGGGGGCCCATCTGCTACTCTTTCCCACCAGCTCCCCTGTTCCAGTTCTGGTTGCTGTTAGTTTCCCTGAG
 401 GTATTTGCAACCACCATGGCTGGGTAACCACCGATCAGCACAGCTGTCCCCTTGGTCTCCTGTATCCCAGTCACTAGTCC
 481 TCCCTGGTCCACCCCACCCTCATCCTCAGGAGCCACAGCCATTTCTTAGAGGGTTTCAAAAGGACAGCCTTTGGCGCCTT
 561 TTCCTTCTAACCTTTGAGTCCAGCCCTTTCCAGTTTTCATTCACTCGAAGTAACTGCACTCAAGCTGTGCTCAAAATCGG
 641 CAACGCATTTATTTACACCAAGCCCTTCCCATAAAACACAACTGCTGAAGAAAATAGCAGACGTTTCCCCTCTCTCTAAC
 721 TCTGGGTATCCCACAGATGCAAAAGGGAGAATAAACCTGAATATTATTACCAGCCTAGAGTCTTGAATGATAGCCTTACC
 801 GAATTCTTCTTGTGAGGTATTTCAGCATCTCGGGGGGTAATTTCCGGAAGGGCTCCATACTGTCCCAATAAGGTGAGGCC
 881 AGTAGCAGGAATAATAAATCCCACTTTGTAGGCTGGAAAACTGAGCTGTCAAAAGAATCAAGTGTTTGGGGGTTTGCTCT
 961 GATGAGTCTTCTAGTTCATTTGGTGAATGTCATGATGATTTTTAACATGCATTTTGCATGCATCCCCCAATAAGAAGAGA
1041 TGAGACTCGGCCGGAGAGAAGAAAAGGCCCTTAACTTTCTTTCCAATTTAAGGAGTTGAGAGTTTAAAAATATTCCAGCC
1121 CTAAGTTTTTATCATGGGTCCCATCTGATAGTGGCTTTGGGAACCTCTGTGAAGTAGAGAGCCCTCCCTTGTCAGGGTTA
1201 TGAGGCACAGTGGCCTTTGGTGTTTGGCCAGTGACAGTGTGAGAGATGGAGTTGACCTGGCAATGATCTGTGGCTAACAT
1281 GCCGTCTCTCTGCCCTTCCTTTGCAGTAATCCATGGCTGTGTACTGAATAGTATTCCCCGCTACAGCTGGACTGGACTCC
1361 ATTTAGCCTTTTAAGCCGAGGTTCCTATTTTAACTGACAGCTTTCCTTTGGGGTGCCAGGCAGCGAGGCCCCCCACCCCT
1441 ATCCTGCCATGTACTTCAAGCTCACTTCTTCTTTTTGAGTTCCGCAACTTGCTCCTGCCTCCCAGCCCCACTGGCACTGA
1521 CCATGACCACCTACTTCTATTTTTTTTTTAGAGTTTCTTTTTTTGATCACTTACTTTCAAAGCACACAGTCAAACAAGGT
1601 TATGCCAAATTTCCAGGCCTTTTTGAAGTATTGAGAAGGGGAAGGGGATTTCTCACTTCAATTATAGATCATAATAGGAA
1681 GCAAAAAGAAAAAAATGAAAAGCAAACATATGCACGCACTTTTCTTGTTGACAAAGCAAGAATATAGGTTTGCTGTGTAG
1761 GTTTGGTGCTCTATTGATTGGTGAGTGACCAGAGCAAGTATGAAGGTGATGCTGCCAAAGCACAAGCCAGTTTCTTGGGA
1841 AAATTCAAGTTACAGTGGAGTATTTTTTTGAAGACCATATGCTTGGAGGTAGAAACAAACCAACGACCAAAAAAAAAAAA
1921 AAAAAAATCTGCTCAGATACTCAGCCAGTAGCTCAGAGAGATGCTGAGTTAGGCCTGTCAGGTCTCCTTGGGAAAGGCTT
2001 CATATTTGCAACTTTGATGATTCTATGTCCAGCTTCAGAGCTGCTTTCCCAGAAATTCACGCTTAAACAACCAACCGGTA
2081 ACCACCACTTCCCCACACCGCCGCCCGGTAATTATTTGCATTACAAACCGGAGGCGCCCTCATTTGCATTTGTGTACAGA
2161 TTAACTAGTTAAGGCTTGAGAAGCTCTGAATAATTCAAAAGTATTAGACCCACACAGCCTTGGAGAGACCTTCAGAAACT
2241 AAGGAGGAGTTTTATATTAAGGGAGACATTTTAGTCAGTAAGACGATATAACCTACTTACTCCGTAAGGGGAAATGAAGG
2321 CCCAGAGAAGGGAAGGGACTTGACCGAGGTCCCACTTCTGTTTCGAGGCAGAAGCCAGACTAATTTTCATGCCTCCTGAC
2401 TCCCAATCAGTTTCACAAAGGGATTCAATCTGTTTATATACGTTACATTCCTGGATACGAGGTCTTTTGATGTTCAGAGT
2481 AACTGACTAGTTAGTATTAGAAGACCCTCGAGGTTTTTTTCCACAGAAAAACATCTGAAGATGGATTGGGTGAGGGCTGG
2561 CAAAACGAAGGCATGCCGGGCCAGCTCCTTAACCCAATGACCCAGTGATGCTGCAAGGCTGGAACGGGGTCCAGGAGACT
2641 GTGTGTAACAGGTGCCCTAGGTGACCCTTATAATCAGGGAAGTTTGGTGAACAAAAATCGAACCCATGAGTGAACATAAA
2721 TTAAAAAGTTGATCAACCTATTAAAATGTGTATTTCATTGGGTAGCTTTTCTCACTGTAGACAGATTTTTTCCTTCTTCA
2801 ATGAAAAGGCTTTTAAATTAGTACAACTGTTACTATTTAAAAAAAAAATACCCTAAGTACTCTGTTTACTTCTGGTGAAA
2881 CAAAACCAGTCATTAGAAATGGTCTGTGCTTTTATTTTCCCAGACTGGAGTGGCTTTTCTGAAACACACACACACACACA
2961 CACACACACACACACACACACACACACACACACGTACACACATCCCTCACTTCTCTTAAGCCAAGAAGTTTGCTTTCCCT
3041 AGCTGCAGTGTAGATGGCTCTTGTTTTTGTTTTTTTGTTTTAATCATTTGGCATTCACATGTGGCTGTTAATATGTGCTT
3121 GTTTTTAATTAAAACAAGAAGCTTTAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggUUGGAGC-UGCUAGAGGAGu 5'
            |||| || :|  ||||||| 
Target 5' ccAACC-CGCGCCCTCTCCTCt 3'
 135 - 155 154.00 -22.80
2 
miRNA  3' ggUUGGAGCUG-CUAGAGGAGu 5'
            ::||| | | |:||||||: 
Target 5' taGGCCT-GTCAGGTCTCCTTg 3'
 1970 - 1990 138.00 -16.20
3 
miRNA  3' gguUGGAGCUGCUAGAGGAgu 5'
             ::| |  :|:||||||  
Target 5' gctGTCCCCTTGGTCTCCTgt 3'
 443 - 463 130.00 -15.90
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1391533831 4 dbSNP
rs1259597818 8 dbSNP
rs756259230 11 dbSNP
rs1395060483 18 dbSNP
rs923161106 20 dbSNP
rs974819007 22 dbSNP
rs1488450818 32 dbSNP
rs762145748 47 dbSNP
rs943474958 63 dbSNP
rs909301056 68 dbSNP
rs984756677 69 dbSNP
rs1254886086 77 dbSNP
rs1043308377 80 dbSNP
rs369786518 88 dbSNP
rs1182195204 91 dbSNP
rs1318443550 92 dbSNP
rs950762908 94 dbSNP
rs1417215750 97 dbSNP
rs1026959700 100 dbSNP
rs991654465 103 dbSNP
rs1420317891 108 dbSNP
rs1300278850 111 dbSNP
rs1384352704 120 dbSNP
rs1373821659 129 dbSNP
rs992447164 130 dbSNP
rs928429646 132 dbSNP
rs1382014938 143 dbSNP
rs1390164640 146 dbSNP
rs1455568613 158 dbSNP
rs961146634 169 dbSNP
rs748125946 170 dbSNP
rs961748857 170 dbSNP
rs1277789131 179 dbSNP
rs781489479 198 dbSNP
rs146074839 216 dbSNP
rs1173461640 217 dbSNP
rs1454973134 218 dbSNP
rs1001235754 220 dbSNP
rs1176541940 225 dbSNP
rs12854273 242 dbSNP
rs780732648 242 dbSNP
rs751801627 248 dbSNP
rs1440427588 250 dbSNP
rs1160477353 254 dbSNP
rs1393553926 255 dbSNP
rs1414090749 256 dbSNP
rs1177332415 258 dbSNP
rs1006144291 272 dbSNP
rs765987905 279 dbSNP
rs1440400445 288 dbSNP
rs766330086 294 dbSNP
rs969740121 298 dbSNP
rs1028821586 299 dbSNP
rs1261851381 300 dbSNP
rs758242774 302 dbSNP
rs901240996 309 dbSNP
rs1482092393 327 dbSNP
rs1369842107 346 dbSNP
rs760411988 346 dbSNP
rs1041149509 348 dbSNP
rs545459282 353 dbSNP
rs1053424601 363 dbSNP
rs999238985 367 dbSNP
rs12853551 370 dbSNP
rs997478399 372 dbSNP
rs1180630231 378 dbSNP
rs1251210971 381 dbSNP
rs1349780365 402 dbSNP
rs1295045945 405 dbSNP
rs901672969 407 dbSNP
rs1192008914 414 dbSNP
rs1427448629 426 dbSNP
rs141814403 451 dbSNP
rs1170354458 467 dbSNP
rs947634611 471 dbSNP
rs1467617762 481 dbSNP
rs1319111453 501 dbSNP
rs943193564 504 dbSNP
rs748137634 506 dbSNP
rs1276275695 513 dbSNP
rs1400405303 523 dbSNP
rs1213823150 526 dbSNP
rs916205246 529 dbSNP
rs1312492531 552 dbSNP
rs1435494739 553 dbSNP
rs1395435908 555 dbSNP
rs577141104 563 dbSNP
rs1211727680 564 dbSNP
rs761412316 571 dbSNP
rs1475395117 573 dbSNP
rs1272407867 580 dbSNP
rs1056351972 581 dbSNP
rs1222348398 584 dbSNP
rs775949170 597 dbSNP
rs376777291 598 dbSNP
rs1374113428 603 dbSNP
rs1194765478 606 dbSNP
rs1421532404 609 dbSNP
rs763816226 611 dbSNP
rs1211165888 613 dbSNP
rs929279956 616 dbSNP
rs1486415750 618 dbSNP
rs1479124005 619 dbSNP
rs768791505 621 dbSNP
rs992811559 631 dbSNP
rs749301634 637 dbSNP
rs1405463540 649 dbSNP
rs1324926561 659 dbSNP
rs1343111109 676 dbSNP
rs1204139964 695 dbSNP
rs1399003182 696 dbSNP
rs938889191 704 dbSNP
rs961026642 708 dbSNP
rs926879447 713 dbSNP
rs971855290 715 dbSNP
rs148587664 722 dbSNP
rs775111428 729 dbSNP
rs968198760 730 dbSNP
rs1021304079 732 dbSNP
rs1292682187 738 dbSNP
rs1011347035 739 dbSNP
rs1216151440 740 dbSNP
rs955892776 750 dbSNP
rs1377459359 762 dbSNP
rs1489480554 770 dbSNP
rs372534569 774 dbSNP
rs1186191433 782 dbSNP
rs189466624 785 dbSNP
rs1473392498 792 dbSNP
rs184633667 796 dbSNP
rs1158741107 799 dbSNP
rs1418498274 799 dbSNP
rs1397908800 805 dbSNP
rs997596661 806 dbSNP
rs1170145951 809 dbSNP
rs756308281 813 dbSNP
rs1333238312 815 dbSNP
rs953271527 826 dbSNP
rs773728750 827 dbSNP
rs1286089797 831 dbSNP
rs1007377926 848 dbSNP
rs770141265 851 dbSNP
rs1187988862 852 dbSNP
rs1476001473 861 dbSNP
rs1239438371 866 dbSNP
rs1287032909 900 dbSNP
rs1356092835 902 dbSNP
rs1209225657 916 dbSNP
rs748263922 918 dbSNP
rs781195904 921 dbSNP
rs976293125 922 dbSNP
rs887633597 933 dbSNP
rs1049161299 940 dbSNP
rs1158670700 946 dbSNP
rs1381833841 949 dbSNP
rs1432447193 950 dbSNP
rs1180893374 954 dbSNP
rs929441036 955 dbSNP
rs919248578 958 dbSNP
rs1415904339 959 dbSNP
rs5910623 963 dbSNP
rs912069555 972 dbSNP
rs192163045 973 dbSNP
rs926846885 974 dbSNP
rs780389386 981 dbSNP
rs1231317384 982 dbSNP
rs1255568510 993 dbSNP
rs1020077266 1007 dbSNP
rs998958315 1014 dbSNP
rs903313628 1026 dbSNP
rs946865082 1030 dbSNP
rs1457694293 1039 dbSNP
rs1286671021 1040 dbSNP
rs758296175 1044 dbSNP
rs1239465214 1051 dbSNP
rs915436651 1065 dbSNP
rs1197744764 1075 dbSNP
rs12839548 1076 dbSNP
rs879032813 1078 dbSNP
rs1331229260 1086 dbSNP
rs955779759 1087 dbSNP
rs779009934 1091 dbSNP
rs1031847831 1097 dbSNP
rs563725011 1104 dbSNP
rs139282281 1105 dbSNP
rs1402556162 1109 dbSNP
rs1017516066 1114 dbSNP
rs1157637054 1116 dbSNP
rs1470273235 1118 dbSNP
rs763570502 1132 dbSNP
rs760210770 1138 dbSNP
rs1276673497 1146 dbSNP
rs1196428586 1147 dbSNP
rs1468006890 1152 dbSNP
rs887602488 1163 dbSNP
rs1214464410 1164 dbSNP
rs1027527946 1170 dbSNP
rs1260473831 1171 dbSNP
rs1282163518 1179 dbSNP
rs1477985086 1182 dbSNP
rs1223444842 1183 dbSNP
rs1351615042 1184 dbSNP
rs372205583 1187 dbSNP
rs1422655058 1189 dbSNP
rs1434726313 1191 dbSNP
rs1172749495 1192 dbSNP
rs1415518584 1194 dbSNP
rs953542388 1195 dbSNP
rs1292983454 1196 dbSNP
rs1029069423 1199 dbSNP
rs973447749 1203 dbSNP
rs1296805299 1206 dbSNP
rs397834392 1207 dbSNP
rs1157672403 1208 dbSNP
rs1194935985 1211 dbSNP
rs1320400147 1211 dbSNP
rs2782252 1211 dbSNP
rs1265504460 1212 dbSNP
rs1267024288 1212 dbSNP
rs1489298408 1212 dbSNP
rs1021580689 1213 dbSNP
rs1409658987 1214 dbSNP
rs767118492 1215 dbSNP
rs1254045056 1216 dbSNP
rs1423152318 1217 dbSNP
rs1491125634 1218 dbSNP
rs763319883 1218 dbSNP
rs1300399652 1219 dbSNP
rs1491107826 1219 dbSNP
rs66945031 1219 dbSNP
rs751521513 1219 dbSNP
rs866036728 1219 dbSNP
rs1453564746 1220 dbSNP
rs200371950 1220 dbSNP
rs1313985051 1221 dbSNP
rs773497694 1221 dbSNP
rs112780297 1222 dbSNP
rs1237266169 1222 dbSNP
rs1011558700 1223 dbSNP
rs762283999 1223 dbSNP
rs1254012740 1224 dbSNP
rs1482923881 1224 dbSNP
rs1463444791 1225 dbSNP
rs1182378523 1229 dbSNP
rs894719457 1230 dbSNP
rs1056061896 1231 dbSNP
rs777169687 1231 dbSNP
rs11338110 1232 dbSNP
rs1357794231 1232 dbSNP
rs1379954051 1232 dbSNP
rs1420528729 1232 dbSNP
rs1491491987 1232 dbSNP
rs1303957146 1233 dbSNP
rs1491395428 1233 dbSNP
rs1447840487 1234 dbSNP
rs1286593570 1235 dbSNP
rs1232642703 1244 dbSNP
rs182850036 1245 dbSNP
rs1241863131 1249 dbSNP
rs1275983329 1255 dbSNP
rs1210496526 1261 dbSNP
rs1311401998 1261 dbSNP
rs1257717181 1264 dbSNP
rs751545921 1275 dbSNP
rs764265067 1277 dbSNP
rs371637252 1279 dbSNP
rs776153648 1283 dbSNP
rs1365831478 1286 dbSNP
rs1182714644 1295 dbSNP
rs938824641 1300 dbSNP
rs770479722 1304 dbSNP
rs1248448505 1309 dbSNP
rs1179187142 1322 dbSNP
rs759972115 1327 dbSNP
rs1462626724 1330 dbSNP
rs1423271552 1334 dbSNP
rs1263656309 1335 dbSNP
rs1202865334 1339 dbSNP
rs368643305 1340 dbSNP
rs1488903828 1342 dbSNP
rs771248760 1343 dbSNP
rs770464389 1346 dbSNP
rs746692299 1347 dbSNP
rs772534126 1349 dbSNP
rs1306411682 1353 dbSNP
rs1454092567 1361 dbSNP
rs897874185 1362 dbSNP
rs1056964284 1377 dbSNP
rs774799668 1382 dbSNP
rs1287820715 1390 dbSNP
rs747043191 1393 dbSNP
rs1448274692 1399 dbSNP
rs1430787161 1402 dbSNP
rs1346660207 1418 dbSNP
rs1366417683 1420 dbSNP
rs1331791271 1436 dbSNP
rs1433646074 1440 dbSNP
rs1316066586 1449 dbSNP
rs905224060 1450 dbSNP
rs146749871 1455 dbSNP
rs142777261 1465 dbSNP
rs1260511760 1471 dbSNP
rs1458291428 1475 dbSNP
rs1206667804 1495 dbSNP
rs915498657 1501 dbSNP
rs1447618675 1510 dbSNP
rs1488266468 1513 dbSNP
rs1345616190 1518 dbSNP
rs745666542 1518 dbSNP
rs778644799 1518 dbSNP
rs756427225 1530 dbSNP
rs988294880 1530 dbSNP
rs1424903680 1531 dbSNP
rs1411181170 1538 dbSNP
rs192153487 1540 dbSNP
rs375078208 1542 dbSNP
rs1475779959 1543 dbSNP
rs924361835 1550 dbSNP
rs1338168139 1562 dbSNP
rs777736796 1569 dbSNP
rs1209012705 1571 dbSNP
rs1217740510 1573 dbSNP
rs976262108 1579 dbSNP
rs755654520 1580 dbSNP
rs1278804652 1583 dbSNP
rs554566951 1605 dbSNP
rs966238393 1606 dbSNP
rs1485438589 1611 dbSNP
rs764689676 1614 dbSNP
rs1017316748 1629 dbSNP
rs1222591341 1640 dbSNP
rs754537000 1649 dbSNP
rs1030827834 1653 dbSNP
rs986043327 1654 dbSNP
rs1193343307 1655 dbSNP
rs1264576455 1657 dbSNP
rs1476659806 1670 dbSNP
rs951903137 1671 dbSNP
rs1306313788 1678 dbSNP
rs978370333 1679 dbSNP
rs967419664 1682 dbSNP
rs112659497 1692 dbSNP
rs1358193928 1709 dbSNP
rs1027992003 1712 dbSNP
rs1298561899 1722 dbSNP
rs1328189685 1725 dbSNP
rs752142943 1730 dbSNP
rs1283458962 1732 dbSNP
rs1378549449 1737 dbSNP
rs1228913044 1739 dbSNP
rs1305571204 1743 dbSNP
rs1294259383 1744 dbSNP
rs1363462435 1780 dbSNP
rs1216400846 1782 dbSNP
rs1287168879 1798 dbSNP
rs767159402 1800 dbSNP
rs187486300 1801 dbSNP
rs897669910 1804 dbSNP
rs1021695834 1808 dbSNP
rs182807313 1810 dbSNP
rs765566204 1811 dbSNP
rs1418705400 1812 dbSNP
rs1011501646 1813 dbSNP
rs905193094 1816 dbSNP
rs191073763 1817 dbSNP
rs1333453618 1825 dbSNP
rs1340947875 1828 dbSNP
rs1045007354 1834 dbSNP
rs894496940 1836 dbSNP
rs1034974502 1837 dbSNP
rs1280304649 1837 dbSNP
rs946729238 1842 dbSNP
rs1411534245 1843 dbSNP
rs1443477721 1843 dbSNP
rs1036528051 1852 dbSNP
rs760419030 1853 dbSNP
rs1178879689 1860 dbSNP
rs1365131799 1878 dbSNP
rs1185842684 1888 dbSNP
rs894030970 1906 dbSNP
rs1402881394 1912 dbSNP
rs887512447 1924 dbSNP
rs1338853753 1932 dbSNP
rs1398204387 1942 dbSNP
rs1053137322 1943 dbSNP
rs1329834490 1946 dbSNP
rs188616348 1953 dbSNP
rs1337726208 1961 dbSNP
rs1231598287 1969 dbSNP
rs12835780 1978 dbSNP
rs12838255 1999 dbSNP
rs935495871 2004 dbSNP
rs769155637 2006 dbSNP
rs1225891588 2007 dbSNP
rs1456947351 2008 dbSNP
rs12835749 2016 dbSNP
rs12844169 2023 dbSNP
rs931598070 2028 dbSNP
rs1252276652 2043 dbSNP
rs1190584077 2044 dbSNP
rs1197971908 2047 dbSNP
rs750025017 2054 dbSNP
rs921624186 2086 dbSNP
rs1251048911 2105 dbSNP
rs767361740 2112 dbSNP
rs1205852940 2117 dbSNP
rs1040139680 2129 dbSNP
rs976188530 2130 dbSNP
rs761591974 2134 dbSNP
rs1385305188 2149 dbSNP
rs1323068166 2154 dbSNP
rs910305391 2160 dbSNP
rs977884340 2166 dbSNP
rs967870042 2167 dbSNP
rs1317811983 2169 dbSNP
rs182864811 2176 dbSNP
rs1355751547 2178 dbSNP
rs774277845 2195 dbSNP
rs1389254362 2202 dbSNP
rs1208872686 2230 dbSNP
rs1269077558 2231 dbSNP
rs1372362183 2232 dbSNP
rs1490789287 2249 dbSNP
rs768523792 2254 dbSNP
rs1298483625 2263 dbSNP
rs1262453251 2272 dbSNP
rs951704287 2273 dbSNP
rs920499128 2274 dbSNP
rs775647175 2307 dbSNP
rs1478101307 2325 dbSNP
rs1171307266 2331 dbSNP
rs1374869168 2337 dbSNP
rs1456408410 2341 dbSNP
rs1162914438 2342 dbSNP
rs1366382649 2353 dbSNP
rs972413011 2358 dbSNP
rs1296713931 2365 dbSNP
rs1444329947 2368 dbSNP
rs961889168 2369 dbSNP
rs772278245 2385 dbSNP
rs990194595 2394 dbSNP
rs1338203463 2409 dbSNP
rs1243367992 2414 dbSNP
rs1035297945 2426 dbSNP
rs1292107193 2431 dbSNP
rs1460970249 2440 dbSNP
rs1214257517 2442 dbSNP
rs753160298 2467 dbSNP
rs113540350 2468 dbSNP
rs1188222524 2474 dbSNP
rs1167383619 2495 dbSNP
rs762966539 2496 dbSNP
rs1023691397 2498 dbSNP
rs1417499247 2502 dbSNP
rs775598732 2518 dbSNP
rs1446655748 2519 dbSNP
rs1157296692 2530 dbSNP
rs1178101143 2531 dbSNP
rs34946371 2543 dbSNP
rs893822714 2547 dbSNP
rs1052689458 2548 dbSNP
rs190675551 2559 dbSNP
rs150090608 2569 dbSNP
rs769729695 2574 dbSNP
rs140671850 2592 dbSNP
rs1394997445 2593 dbSNP
rs1212587543 2615 dbSNP
rs1334922673 2628 dbSNP
rs1005031895 2637 dbSNP
rs1237513797 2644 dbSNP
rs1041194223 2652 dbSNP
rs1317324534 2666 dbSNP
rs113007246 2667 dbSNP
rs1274440766 2670 dbSNP
rs910274252 2673 dbSNP
rs181389709 2675 dbSNP
rs930306744 2680 dbSNP
rs746150503 2681 dbSNP
rs1446449097 2696 dbSNP
rs190168387 2697 dbSNP
rs900290797 2699 dbSNP
rs1368765816 2702 dbSNP
rs971996105 2707 dbSNP
rs962308539 2709 dbSNP
rs1040022893 2715 dbSNP
rs927912440 2724 dbSNP
rs944401870 2726 dbSNP
rs981883111 2732 dbSNP
rs1161709934 2751 dbSNP
rs781253199 2755 dbSNP
rs1465978496 2764 dbSNP
rs1337889386 2782 dbSNP
rs1407676103 2784 dbSNP
rs1395334542 2796 dbSNP
rs367996068 2806 dbSNP
rs1295317951 2807 dbSNP
rs1330303710 2812 dbSNP
rs1042302021 2818 dbSNP
rs1451941640 2820 dbSNP
rs1363408794 2831 dbSNP
rs1311600655 2832 dbSNP
rs1224048974 2843 dbSNP
rs305151 2855 dbSNP
rs1010975187 2857 dbSNP
rs748072359 2874 dbSNP
rs1196778129 2890 dbSNP
rs1232576559 2893 dbSNP
rs1441916416 2898 dbSNP
rs1393877849 2899 dbSNP
rs186284694 2903 dbSNP
rs1469265259 2915 dbSNP
rs1265716822 2916 dbSNP
rs1480281850 2919 dbSNP
rs754462004 2930 dbSNP
rs1202821526 2944 dbSNP
rs1432034414 2952 dbSNP
rs990645230 2960 dbSNP
rs1485366940 2969 dbSNP
rs1169105981 2972 dbSNP
rs958814508 2977 dbSNP
rs1260931350 2983 dbSNP
rs1291360592 2984 dbSNP
rs1366656916 2992 dbSNP
rs999536965 2993 dbSNP
rs901386699 3010 dbSNP
rs1041331358 3020 dbSNP
rs927391792 3050 dbSNP
rs1315950699 3055 dbSNP
rs143617482 3059 dbSNP
rs981453447 3064 dbSNP
rs1302346406 3081 dbSNP
rs1206907609 3082 dbSNP
rs766012214 3088 dbSNP
rs889981920 3095 dbSNP
rs1050157106 3099 dbSNP
rs1234961025 3100 dbSNP
rs566772337 3101 dbSNP
rs898827433 3103 dbSNP
rs757582887 3106 dbSNP
rs1005146481 3110 dbSNP
rs1036406287 3124 dbSNP
rs1185498570 3151 dbSNP
rs1384597673 3162 dbSNP
rs181553622 3172 dbSNP
rs927863724 3184 dbSNP
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rs1238906598 7185 dbSNP
rs756653208 7187 dbSNP
rs1450145516 7188 dbSNP
rs1383564698 7190 dbSNP
rs866027404 7191 dbSNP
rs1170991215 7198 dbSNP
rs1424947856 7203 dbSNP
rs1176134046 7211 dbSNP
rs1369233032 7211 dbSNP
rs1435695999 7211 dbSNP
rs371467814 7211 dbSNP
rs373819132 7211 dbSNP
rs386417476 7211 dbSNP
rs57766875 7211 dbSNP
rs878874636 7211 dbSNP
rs890463405 7211 dbSNP
rs1205708221 7212 dbSNP
rs1272471243 7212 dbSNP
rs1273834806 7218 dbSNP
rs1358926812 7220 dbSNP
rs1439597610 7223 dbSNP
rs1197077230 7228 dbSNP
rs1246325344 7234 dbSNP
rs1455023579 7241 dbSNP
rs1195892702 7243 dbSNP
rs1388633936 7254 dbSNP
rs921165595 7254 dbSNP
rs764797027 7257 dbSNP
rs1398058643 7264 dbSNP
rs1403073349 7279 dbSNP
rs1322542849 7283 dbSNP
rs1371268201 7284 dbSNP
rs1442561899 7298 dbSNP
rs1240103191 7316 dbSNP
rs975763579 7321 dbSNP
rs1228108488 7323 dbSNP
rs1310883993 7344 dbSNP
rs1271829326 7346 dbSNP
rs1438065034 7359 dbSNP
rs1208124674 7360 dbSNP
rs181616498 7361 dbSNP
rs945629652 7365 dbSNP
rs1246605641 7371 dbSNP
rs1017218952 7382 dbSNP
rs892744409 7383 dbSNP
rs759854476 7385 dbSNP
rs1004051483 7386 dbSNP
rs305153 7389 dbSNP
rs1162130238 7391 dbSNP
rs534574866 7412 dbSNP
rs1014184227 7418 dbSNP
rs926344059 7419 dbSNP
rs1387688907 7420 dbSNP
rs1382079745 7433 dbSNP
rs894503351 7433 dbSNP
rs191477110 7439 dbSNP
rs1320279599 7451 dbSNP
rs1180660218 7456 dbSNP
rs866119607 7461 dbSNP
rs1246145477 7468 dbSNP
rs904778614 7486 dbSNP
rs1199880842 7488 dbSNP
rs1235412238 7510 dbSNP
rs781579771 7527 dbSNP
rs1042247256 7530 dbSNP
rs1266447031 7541 dbSNP
rs1485779194 7557 dbSNP
rs1264214199 7563 dbSNP
rs771373484 7563 dbSNP
rs1441202564 7566 dbSNP
rs1187794446 7567 dbSNP
rs1417994651 7572 dbSNP
rs1275310627 7578 dbSNP
rs1284374876 7586 dbSNP
rs1156572532 7587 dbSNP
rs1410759018 7591 dbSNP
rs187473214 7593 dbSNP
rs949039992 7604 dbSNP
rs917586103 7606 dbSNP
rs305154 7607 dbSNP
rs769906952 7613 dbSNP
rs913631192 7625 dbSNP
rs1356229800 7627 dbSNP
rs1050855947 7628 dbSNP
rs933632802 7629 dbSNP
rs951257053 7631 dbSNP
rs1026930702 7633 dbSNP
rs973872329 7648 dbSNP
rs1288781017 7665 dbSNP
rs1343260279 7673 dbSNP
rs1210850943 7683 dbSNP
rs1258805347 7688 dbSNP
rs963929079 7705 dbSNP
rs1179387495 7711 dbSNP
rs1249131907 7721 dbSNP
rs920961860 7723 dbSNP
rs975352745 7724 dbSNP
rs780846900 7741 dbSNP
rs909807964 7742 dbSNP
rs1217912957 7746 dbSNP
rs1018065608 7760 dbSNP
rs982993099 7762 dbSNP
rs1174244718 7766 dbSNP
rs951235180 7773 dbSNP
rs756864853 7777 dbSNP
rs1377192253 7782 dbSNP
rs748355139 7784 dbSNP
rs1306271853 7788 dbSNP
rs1438215775 7789 dbSNP
rs890570103 7792 dbSNP
rs992900394 7803 dbSNP
rs1324294815 7804 dbSNP
rs751181083 7808 dbSNP
rs1400376984 7810 dbSNP
rs1009552501 7815 dbSNP
rs892691916 7820 dbSNP
rs1350689110 7828 dbSNP
rs1053985357 7849 dbSNP
rs1250293392 7850 dbSNP
rs936797064 7853 dbSNP
rs781521919 7860 dbSNP
rs1171696728 7861 dbSNP
rs1393628311 7868 dbSNP
rs754837677 7879 dbSNP
rs1000208916 7884 dbSNP
rs1045675776 7902 dbSNP
rs1413791493 7903 dbSNP
rs751338056 7909 dbSNP
rs1169603975 7912 dbSNP
rs1354049065 7913 dbSNP
rs949158904 7914 dbSNP
rs1300178716 7930 dbSNP
rs904745076 7933 dbSNP
rs780144158 7942 dbSNP
rs763924315 7947 dbSNP
rs1010392586 7950 dbSNP
rs1440366062 7961 dbSNP
rs1304644532 7969 dbSNP
rs1373585364 7971 dbSNP
rs1014929351 7972 dbSNP
rs917680246 7972 dbSNP
rs890658753 7975 dbSNP
rs373274108 7997 dbSNP
rs1206000398 7998 dbSNP
rs1050822159 8004 dbSNP
rs1173203830 8012 dbSNP
rs1479157176 8044 dbSNP
rs1467763363 8047 dbSNP
rs933765874 8067 dbSNP
rs929639858 8070 dbSNP
rs1254686515 8075 dbSNP
rs1447398277 8075 dbSNP
rs6646434 8079 dbSNP
rs1261292145 8094 dbSNP
rs1193486291 8101 dbSNP
rs919816917 8103 dbSNP
rs1488826127 8107 dbSNP
rs899581637 8118 dbSNP
rs1461143796 8121 dbSNP
rs758476351 8122 dbSNP
rs1397196526 8129 dbSNP
rs1312089809 8131 dbSNP
rs1288862935 8132 dbSNP
rs533552227 8132 dbSNP
rs370824236 8135 dbSNP
rs1278767080 8146 dbSNP
rs941050386 8159 dbSNP
rs909766131 8161 dbSNP
rs1315750379 8174 dbSNP
rs1333470342 8178 dbSNP
rs1233563203 8182 dbSNP
rs1277183514 8185 dbSNP
rs1218797867 8192 dbSNP
rs1463425919 8194 dbSNP
rs1342170333 8202 dbSNP
rs982685721 8226 dbSNP
rs1459455834 8227 dbSNP
rs1486817184 8229 dbSNP
rs929797240 8251 dbSNP
rs1179996953 8254 dbSNP
rs917120841 8255 dbSNP
rs866737306 8257 dbSNP
rs865897171 8258 dbSNP
rs868439869 8259 dbSNP
rs866847101 8260 dbSNP
rs1359650915 8261 dbSNP
rs968773185 8261 dbSNP
rs1158851629 8262 dbSNP
rs1335004729 8263 dbSNP
rs1346107672 8265 dbSNP
rs1416241034 8265 dbSNP
rs1020944877 8266 dbSNP
rs1421493237 8266 dbSNP
rs1170257136 8267 dbSNP
rs1478246615 8268 dbSNP
rs1414847969 8269 dbSNP
rs1294820642 8270 dbSNP
rs1426282214 8271 dbSNP
rs1326650376 8273 dbSNP
rs1222797703 8276 dbSNP
rs1165231124 8277 dbSNP
rs1176789628 8277 dbSNP
rs1188750523 8277 dbSNP
rs1207988564 8277 dbSNP
rs1229381662 8277 dbSNP
rs1256694759 8277 dbSNP
rs1259635528 8277 dbSNP
rs1282602218 8277 dbSNP
rs1284718895 8277 dbSNP
rs1314195042 8277 dbSNP
rs1318463489 8277 dbSNP
rs1333432594 8277 dbSNP
rs1409219985 8277 dbSNP
rs1435815005 8277 dbSNP
rs1468818079 8277 dbSNP
rs1485423054 8277 dbSNP
rs55820919 8277 dbSNP
rs563443939 8277 dbSNP
rs758549881 8277 dbSNP
rs763202033 8277 dbSNP
rs983896340 8277 dbSNP
rs890623501 8278 dbSNP
rs1436117982 8279 dbSNP
rs1204146379 8286 dbSNP
rs1233650730 8286 dbSNP
rs1471398023 8299 dbSNP
rs973988409 8301 dbSNP
rs964183780 8310 dbSNP
rs758114579 8316 dbSNP
rs1018099455 8324 dbSNP
rs1176033923 8324 dbSNP
rs1030463511 8326 dbSNP
rs1408842315 8335 dbSNP
rs764700513 8346 dbSNP
rs1238551852 8350 dbSNP
rs1355921720 8353 dbSNP
rs996351801 8354 dbSNP
rs1302439240 8356 dbSNP
rs1371409799 8360 dbSNP
rs1236450009 8365 dbSNP
rs1212775917 8385 dbSNP
rs1456078647 8405 dbSNP
rs1195295181 8406 dbSNP
rs954805515 8413 dbSNP
rs1198919568 8423 dbSNP
rs899549630 8425 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166 , TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gguuggagcugcuAGAGGAGu 5'
                       ||||||| 
Target 5' ---------gcccUCUCCUCu 3'
 		1 - 12
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000394610.1 | 3UTR | CGCGCCCUCUCCUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000394610.1 | 3UTR | GCCCUCUCCUCUCUUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.802 0 0.766 0 26 Click to see details
BRCA 0.254 0.02 0.289 0.01 65 Click to see details
LUAD -0.53 0.04 -0.308 0.17 12 Click to see details
ESCA 0.958 0.09 1.000 0.5 3 Click to see details
STAD 0.277 0.11 0.319 0.07 22 Click to see details
KICH 0.314 0.15 0.093 0.38 13 Click to see details
KIRP 0.248 0.22 0.224 0.24 12 Click to see details
PAAD 0.549 0.23 0.200 0.4 4 Click to see details
LIHC -0.129 0.25 -0.150 0.22 29 Click to see details
HNSC 0.106 0.25 0.041 0.4 41 Click to see details
KIRC -0.164 0.34 -0.217 0.29 9 Click to see details
CHOL -0.312 0.34 -0.200 0.4 4 Click to see details
LUSC -0.042 0.41 -0.193 0.15 31 Click to see details
UCEC 0.131 0.42 -0.100 0.44 5 Click to see details
PRAD -0.056 0.46 0.300 0.31 5 Click to see details
BLCA 0.007 0.49 0.318 0.12 15 Click to see details
BLCA 0.007 0.49 0.318 0.12 15 Click to see details
BLCA 0.007 0.49 0.318 0.12 15 Click to see details
182 hsa-miR-3150b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066803 ARID1A AT-rich interaction domain 1A 2 2
MIRT087964 TNRC6B trinucleotide repeat containing 6B 2 4
MIRT112200 BTG2 BTG anti-proliferation factor 2 2 2
MIRT115553 MAZ MYC associated zinc finger protein 2 2
MIRT119127 SPOPL speckle type BTB/POZ protein like 2 2
MIRT153910 NCOA3 nuclear receptor coactivator 3 2 2
MIRT187986 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT240368 RAB2A RAB2A, member RAS oncogene family 2 2
MIRT249675 SLC39A9 solute carrier family 39 member 9 2 4
MIRT267540 C1ORF226 chromosome 1 open reading frame 226 2 2
MIRT282540 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT319703 UBN2 ubinuclein 2 2 2
MIRT373666 POU2F1 POU class 2 homeobox 1 2 2
MIRT390213 GNAI2 G protein subunit alpha i2 2 4
MIRT444379 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT445600 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT445635 TMEM50A transmembrane protein 50A 2 2
MIRT447181 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447212 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447247 IHH indian hedgehog 2 2
MIRT447809 EMX1 empty spiracles homeobox 1 2 2
MIRT447829 CTIF cap binding complex dependent translation initiation factor 2 2
MIRT449181 LUC7L3 LUC7 like 3 pre-mRNA splicing factor 2 2
MIRT451253 ZNF444 zinc finger protein 444 2 2
MIRT451378 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451526 C16orf58 chromosome 16 open reading frame 58 2 2
MIRT451700 C1RL complement C1r subcomponent like 2 2
MIRT453643 SLC4A2 solute carrier family 4 member 2 2 2
MIRT454417 SEPT6 septin 6 2 2
MIRT454636 FAM83H family with sequence similarity 83 member H 2 2
MIRT454889 RAD50 RAD50 double strand break repair protein 2 2
MIRT455298 BCL2L1 BCL2 like 1 2 2
MIRT455521 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT455937 SURF6 surfeit 6 2 2
MIRT456133 SAMD10 sterile alpha motif domain containing 10 2 2
MIRT456325 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 2 2
MIRT457301 ZBTB45 zinc finger and BTB domain containing 45 2 2
MIRT457461 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457533 ZMAT5 zinc finger matrin-type 5 2 2
MIRT457797 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457917 ZNF212 zinc finger protein 212 2 2
MIRT457936 LCE1A late cornified envelope 1A 2 2
MIRT458914 DNM2 dynamin 2 2 4
MIRT459075 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT459484 CCL11 C-C motif chemokine ligand 11 2 2
MIRT459774 IDH3A isocitrate dehydrogenase 3 (NAD(+)) alpha 2 2
MIRT460317 SH3RF1 SH3 domain containing ring finger 1 2 2
MIRT460697 RNF157 ring finger protein 157 2 2
MIRT462049 HOXC13 homeobox C13 2 2
MIRT462156 IGFBP5 insulin like growth factor binding protein 5 2 4
MIRT463293 ZFP91 ZFP91 zinc finger protein 2 2
MIRT463803 XPOT exportin for tRNA 2 2
MIRT463895 WNT7B Wnt family member 7B 2 2
MIRT463942 WIZ widely interspaced zinc finger motifs 2 2
MIRT464660 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 4
MIRT465664 TNPO2 transportin 2 2 2
MIRT465923 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 4
MIRT466003 TMEM189 transmembrane protein 189 2 4
MIRT466824 STX6 syntaxin 6 2 6
MIRT467652 SLC7A1 solute carrier family 7 member 1 2 2
MIRT467820 SLC29A2 solute carrier family 29 member 2 2 2
MIRT468743 SDC2 syndecan 2 2 2
MIRT468793 SBK1 SH3 domain binding kinase 1 2 4
MIRT469989 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT471352 PEG10 paternally expressed 10 2 2
MIRT472016 NPTXR neuronal pentraxin receptor 2 2
MIRT472255 NFIC nuclear factor I C 2 2
MIRT473114 MLXIP MLX interacting protein 2 2
MIRT473725 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT474006 LRRC20 leucine rich repeat containing 20 2 2
MIRT474644 KLF16 Kruppel like factor 16 2 2
MIRT477420 EN2 engrailed homeobox 2 2 2
MIRT477724 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 2 2
MIRT479574 CDC42SE1 CDC42 small effector 1 2 2
MIRT480428 C17orf85 nuclear cap binding subunit 3 2 2
MIRT480439 C17orf49 chromosome 17 open reading frame 49 2 2
MIRT480650 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT480984 BBC3 BCL2 binding component 3 2 2
MIRT481061 BASP1 brain abundant membrane attached signal protein 1 2 2
MIRT481257 ATXN7L3 ataxin 7 like 3 2 2
MIRT481494 ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 2 8
MIRT482034 AMER1 APC membrane recruitment protein 1 2 2
MIRT482663 FAM195B MAPK regulated corepressor interacting protein 1 2 4
MIRT482681 NXN nucleoredoxin 2 4
MIRT482710 XRCC3 X-ray repair cross complementing 3 2 2
MIRT482835 GLI4 GLI family zinc finger 4 2 2
MIRT483324 SLC35C2 solute carrier family 35 member C2 2 4
MIRT483410 SPATA6 spermatogenesis associated 6 2 4
MIRT483591 SLC26A9 solute carrier family 26 member 9 2 2
MIRT483781 CASKIN1 CASK interacting protein 1 2 4
MIRT483819 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT483845 UNC5B unc-5 netrin receptor B 2 4
MIRT483972 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT484083 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 4
MIRT484393 ZNF710 zinc finger protein 710 2 4
MIRT484510 SYT7 synaptotagmin 7 2 2
MIRT484797 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT484858 ZNF70 zinc finger protein 70 2 4
MIRT485397 MRVI1 murine retrovirus integration site 1 homolog 2 8
MIRT485614 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT486168 TLE3 transducin like enhancer of split 3 2 2
MIRT486228 NLRP2 NLR family pyrin domain containing 2 2 2
MIRT486249 FASTK Fas activated serine/threonine kinase 2 2
MIRT486296 KBTBD3 kelch repeat and BTB domain containing 3 2 2
MIRT486384 TIGD5 tigger transposable element derived 5 2 2
MIRT486474 TSC22D1 TSC22 domain family member 1 2 2
MIRT486567 SLC38A4 solute carrier family 38 member 4 2 2
MIRT486615 METTL6 methyltransferase like 6 2 2
MIRT487499 IL1F10 interleukin 1 family member 10 2 4
MIRT487520 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT487929 KCND1 potassium voltage-gated channel subfamily D member 1 2 2
MIRT488047 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488063 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488173 PRRC2B proline rich coiled-coil 2B 2 4
MIRT488326 AFF2 AF4/FMR2 family member 2 2 4
MIRT488925 GFRAL GDNF family receptor alpha like 2 2
MIRT489288 RBM8A RNA binding motif protein 8A 2 8
MIRT489483 SLITRK5 SLIT and NTRK like family member 5 2 2
MIRT490460 PROSER2 proline and serine rich 2 2 2
MIRT490563 TEX261 testis expressed 261 2 4
MIRT490843 ADD2 adducin 2 2 2
MIRT491355 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT491455 HOXB5 homeobox B5 2 2
MIRT491585 USB1 U6 snRNA biogenesis phosphodiesterase 1 2 2
MIRT492735 PHF12 PHD finger protein 12 2 2
MIRT493053 MYO1C myosin IC 2 4
MIRT493603 HMGB3 high mobility group box 3 2 6
MIRT493686 HAP1 huntingtin associated protein 1 2 2
MIRT493793 GATA6 GATA binding protein 6 2 2
MIRT493881 FAM73B mitoguardin 2 2 4
MIRT494238 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT494512 BDNF-AS BDNF antisense RNA 2 2
MIRT494717 ARHGAP31 Rho GTPase activating protein 31 2 2
MIRT494907 UCP2 uncoupling protein 2 2 2
MIRT498832 ZNF561 zinc finger protein 561 2 2
MIRT498921 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT498949 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT499551 C15orf43 telomere repeat binding bouquet formation protein 2 2 2
MIRT501370 REXO1 RNA exonuclease 1 homolog 2 4
MIRT511910 FKBP1A FK506 binding protein 1A 2 2
MIRT512594 ZNF783 zinc finger family member 783 2 2
MIRT513339 CDK2 cyclin dependent kinase 2 2 4
MIRT513729 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT527702 IL17REL interleukin 17 receptor E like 2 2
MIRT533488 TRIM71 tripartite motif containing 71 2 2
MIRT533680 TMEM86A transmembrane protein 86A 2 2
MIRT534167 SLC8A1 solute carrier family 8 member A1 2 2
MIRT537885 EDA2R ectodysplasin A2 receptor 2 2
MIRT538548 CELF1 CUGBP Elav-like family member 1 2 2
MIRT552014 RAD18 RAD18, E3 ubiquitin protein ligase 2 2
MIRT555336 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 4
MIRT565155 TUBB2A tubulin beta 2A class IIa 2 2
MIRT568712 TMEM30B transmembrane protein 30B 2 2
MIRT568824 TRIM67 tripartite motif containing 67 2 2
MIRT569459 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT569589 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT569619 ASTN2 astrotactin 2 2 2
MIRT569826 CRMP1 collapsin response mediator protein 1 2 2
MIRT569985 TMEM184A transmembrane protein 184A 2 2
MIRT570066 CPNE2 copine 2 2 2
MIRT570540 RPH3A rabphilin 3A 2 2
MIRT570729 CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 2 2
MIRT570797 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT570898 METTL21A methyltransferase like 21A 2 2
MIRT570944 CPE carboxypeptidase E 2 2
MIRT570964 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT571169 ZNF85 zinc finger protein 85 2 2
MIRT573015 RPP25 ribonuclease P and MRP subunit p25 2 2
MIRT573673 HES6 hes family bHLH transcription factor 6 2 2
MIRT574812 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT576755 Tmem127 transmembrane protein 127 2 2
MIRT618157 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT643640 EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit 2 2
MIRT649084 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT658378 FAM53C family with sequence similarity 53 member C 2 2
MIRT667955 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT691696 FLOT2 flotillin 2 2 2
MIRT697545 ZBTB44 zinc finger and BTB domain containing 44 2 2
MIRT701530 NDEL1 nudE neurodevelopment protein 1 like 1 2 2
MIRT705766 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT715222 NPVF neuropeptide VF precursor 2 2
MIRT719548 CBLB Cbl proto-oncogene B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3150b-3p Paclitaxel 36314 NSC125973 approved sensitive High Laryngeal Cancer cell line (Hep2)
hsa-miR-3150b-3p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PATU8988)
hsa-miR-3150b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3150b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3150b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-3150b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3150b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-3150b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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