pre-miRNA Information
pre-miRNA hsa-mir-3189   
Genomic Coordinates chr19: 18386562 - 18386634
Description Homo sapiens miR-3189 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3189-5p
Sequence 9| UGCCCCAUCUGUGCCCUGGGUAGGA |33
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN20065929 6 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1365326674 4 dbSNP
rs756589279 6 dbSNP
rs780163227 8 dbSNP
rs1283349251 14 dbSNP
rs749362675 15 dbSNP
rs1404459497 24 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RBM14   
Synonyms COAA, PSP2, SIP, SYTIP1, TMEM137
Description RNA binding motif protein 14
Transcript NM_006328   
Expression
Putative miRNA Targets on RBM14
3'UTR of RBM14
(miRNA target sites are highlighted)
>RBM14|NM_006328|3'UTR
   1 GGCCATCCTGGGATGGGGCACCACAGGGAGGGAGGGAGAAAAGAGGTGGGTAGGGTTACAGATCCAGGTTATAACTACTC
  81 TGGCCCATACCTTTCCTGGTTGTGGTTTTTCATGCCCTCTACCATGTGGGCCTTCCCCAGGAGATGATCCTGTTAAGTGT
 161 TCGGCAGTAACCTACTTTGTTCCTTCGCCTCAGCAGCAAATCTTGCTACTGGCTCTAGATCTGCGGTTTCCCCTCTACCC
 241 TGCCTCCCGTCTCCCCAGAATGGGAATTTCTTTTATGTTTTTATTTTTTTCCTGGCTCCCTTTTATTTTTGTGCGCGATA
 321 TTTAAGGTCGTCTGGATGGGGAAGCAACCTGCAGCTGAGGTCGCCGGCGCCTTTTTCTTTTTAGATGGGAAGGAGGCCAG
 401 GAAAGGGTCAGCTTAACCATTTCCTATGTGCCAAGCTGTGCCAGCAGTCCAGGGTACCCTGACTGTCCCTCTGTAGACTG
 481 TTGAGACTGAGTTCCTGTTGGGACAGTCAGTTGGTATGTATCCAAGTCCCTGCTGACCACTAATGTTCTAGCTGATGGTG
 561 AGCGGCACAGTCCCACTTCCCCATCTCCCCAAGTAGGTGGTGTTAGAAAACCTTAATTTTTTTTCCCTTTTGTATGGACT
 641 ACAAATAAAACTTGGGGCAATTTGCAGTTTGGAAACCTGGTTGTCATTGTCTTGATTGCATTCAGTGTCAAAGGAGCCAA
 721 TTTGACATCCAGGAAGACATGATAGCTAAAGGGAAGGCAGTCAGAGAACCCAGGACTGGTGAGGAAAGGGGTTTGAATGT
 801 CGGAATTAGAAGGATTGCCCTGTGGCCCAGAAGGATTTAGCTCATCGTCGTCCTGCTAGCCTGCCATCTTTCAGACTTTC
 881 CAGGGCAGGTGGCCTGGTCCTCAGCCCTCAACTTGAGTTAGTCACACCAAAATGCAGTAAATGATGCCCATTTTCCTCTG
 961 CCTGTGCTTGACCATTTTCACTGACTTTTCTCCAGTTCAGGAATAACCTGTGTTCCAATGGGATGGTTCTGGGGTTTGGC
1041 CTCTTAGGAAGTGGGGAATGGGCTGCTGTGGTATTTACAGGCTAGTAGATCCTTTAGGCAGTAGGCTGGAATGAGTGCTG
1121 GGGCTGGGACCCAGAAAGGAACCAGTAGTGGAGTGGGGGTAATGGCGTTGCCTGATACTGCCCTATGGTTGGAATAAGGA
1201 AGGGCAGAGAAAACTTGAAGCAGGTATGGGGCATTCTGGCCATAGAGCTCGTATTTTGCCTGTTGAGCTGTACCATGGAG
1281 CATCCTCCTGTGTCCTGCCAACCCCTGCCATTATAGTCACCGGAGACTCCTTTACCTATCCCTATCTGTTAGGGTTTTCA
1361 GATGTCCTCTCGCTGGGTTTATATTTGAAGGTATAGAATCTGGGAAAGGGTGGGGTGCAAGCTAACCAAATAGGGATGCT
1441 AGGGTTGGGTGGGGAATTGAGGACTCTTCTGTGCTTTTATTGTAGGGCTGGGGATCGAGGATCTGGGCAAAAAATATGAC
1521 ATTTCCAACCAGGGACAAAATGGAGGCTTGGGCTTAGTGATGGGTAAATGGAAGACTGGTTGAGTGGGATGATAATGGGA
1601 GAACTTACTGATGCTCTTTTGGGAAAAGGTGCTTTAAAGACTCGATTTGGGAGCCTACTGGGGCAAGGCGACTGGGGAGG
1681 TGTACGTGTTAGTCAAGTGGAGGTCAGGTGGGTTATCTTCTGCCTCCTTCACTGGCTTCATGTGAACTTGCCTGTGACAG
1761 AATATCTTGCCCTAGATGTCCTCTTCCCTCTTGCCATCGTGCAAAAGCATTCGATCTTATGACCGTGAGTTCTTATTTGT
1841 GGATGCTAACTGGGGTAATCTCAGGGAGTACTGGGGCCATGGCTCTTTCCCTTGCTTCTCTTTCTGCTCACTGCTTTGCT
1921 TTCAGGTGCTTAGCTGCTCCTTTTTATTTCTTTGCAGGACTGGGAAAGCATGGGAGGAGGATTTTGATAAGTTTCTTGTT
2001 CTCTGCGTGGTGATGGGGTGGTCTGAGGGCCAAGTTAATAAGCCTACCTTTGGTTATTACCCTGGAAAATTGAGGGTTGA
2081 TGGTAGGGTTATGATTGTGGCCTGTGTATTTGCAATTTTTCTTTGTCAGTGTGGCTTTCTGTCATCTTCCTTTTTCTCCA
2161 GTGAGGGTTCTGCCACTGTCTCAATCCCTTGGTTCCTGCAAAAAACAGCTAAATGTGCTCTCAGGGCCAGTGGTGATGTT
2241 CTGTGTTGCAGCCCCAGCTCTTGAAAGTGACCTGGCCCAGATGAGCTCTGCCTGCTTGTCATCTTTAGGTCCTGCTGCCC
2321 CTGCTGCCTCAGCCCTCAGGCTCCTAACTGCTCAAGCCAGAAGGAGCTACAAAGCCAAATCATTTGTCATTTTTCTCTGG
2401 CAGATTGTTTTAAAATCTCCCTCCCCTCTTTTATTTTAATTATGCCACCTGTGTTAATCCTATAGCCTGCTTCTTTGCTT
2481 TGTGGATTACTGATTTCAAGTTCTATAACTTGGGGAAAGTTAGGTTGAGTGAATGGGAGGACAGACACTGAATGTGTGTT
2561 TTGGAAAAATGGACTCTCTATCTTCAGATTATTCAGCTTCTCCACCTATCACCTCTACAACTTGGCCTTCATTGGAGAAG
2641 TTTTAGTTGGCTTATTCCTGGAACAAGACCACCTAGAGGCTTTTAGCCTTGTCAGCCTGCCCTCTTCTGAGGTTTGGACC
2721 TTGTTTTAAATTGTGTGCATGGTGGGCTTGAGACTCTCTTGTAATGGAGGTAATGGGACTATCACTGAGGGGTTCAGCCT
2801 ATCCAGGTAGGCTACCGTTCTAGTCATACCCATCACTTAAATTCTGCCACAGTCTGCACAGACGGTTGGTCCTCCAGGCA
2881 TATTGTCCTATTAAGCCAAATAGGTGGACATCATGGGATGGATGAGGTCATCATGAAAACAGATTTACTGGATTTATGGA
2961 CCTAGTATATACTATGTAACAGATGGAAAACTGAATTTTACAATCTATAGGTACCTTTGAAAGGTCATAAAGGGTAAAAG
3041 TCTATAGTTTTCCAGAAAATAATTCTTAAAACTGGGTTTTATGTCTAGATTTAAATCATGTATCTGTCTGTAGTGCTTCA
3121 AATGTGGCCAGGTGTGGTAGCTCACACCTGTAATTCCCAGCGCTTTGGGAATTTGAGGCAAGAGGATTGCTAGAGGCCAG
3201 GATTTTGAGACCAGCTTCGGCAATACGGTGAGACCTTGTCTCTACCAAAAGAAAAGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaUGGGUCCCGUGUCUACCCCGu 5'
              ||:::  ||| : ||||||| 
Target 5' gaaaACTTGAAGCAGGTATGGGGCa 3'
1209 - 1233 157.00 -20.50
2
miRNA  3' agGAUGGGUCCCGUGUCUACCCCGu 5'
            | |:|| ||     |||||||| 
Target 5' ggCCATCCTGG-----GATGGGGCa 3'
1 - 20 154.00 -25.60
3
miRNA  3' aggAUGGGUCCCGUGUCUACCCCGu 5'
             | |:| | |::  |||||||: 
Target 5' ttgTTCTCTGCGTGGTGATGGGGTg 3'
1996 - 2020 142.00 -18.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30489754 5 COSMIC
COSN30128671 56 COSMIC
COSN8282823 187 COSMIC
COSN31589712 188 COSMIC
COSN26584899 197 COSMIC
COSN5308377 216 COSMIC
COSN28793074 249 COSMIC
COSN21544809 368 COSMIC
COSN1541098 942 COSMIC
COSN30021423 1249 COSMIC
COSN19227099 1534 COSMIC
COSN26600492 1627 COSMIC
COSN26574513 1695 COSMIC
COSN13343421 1814 COSMIC
COSN20108422 1850 COSMIC
COSN22198337 1963 COSMIC
COSN20108425 2579 COSMIC
COSN27356105 2717 COSMIC
COSN1541100 3098 COSMIC
COSN10090774 3142 COSMIC
COSN20351341 3257 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1276882937 2 dbSNP
rs1049538131 3 dbSNP
rs1447053581 4 dbSNP
rs1308928147 5 dbSNP
rs1333742170 7 dbSNP
rs1238266964 8 dbSNP
rs1275330854 12 dbSNP
rs769337208 13 dbSNP
rs774980663 15 dbSNP
rs1261319663 18 dbSNP
rs777082062 22 dbSNP
rs764451458 23 dbSNP
rs1368783703 25 dbSNP
rs1388870868 25 dbSNP
rs774784692 26 dbSNP
rs1436393095 32 dbSNP
rs1054340598 35 dbSNP
rs1181731037 36 dbSNP
rs1378665111 39 dbSNP
rs374483008 44 dbSNP
rs200533475 46 dbSNP
rs759784127 47 dbSNP
rs766633208 49 dbSNP
rs1461095519 50 dbSNP
rs753949927 53 dbSNP
rs1370962888 55 dbSNP
rs753192355 60 dbSNP
rs765818080 62 dbSNP
rs1042449913 66 dbSNP
rs977201730 75 dbSNP
rs906595257 77 dbSNP
rs1424232400 78 dbSNP
rs1197121745 79 dbSNP
rs924066194 81 dbSNP
rs1003656438 82 dbSNP
rs1252538949 86 dbSNP
rs113540746 89 dbSNP
rs573029593 96 dbSNP
rs1205945497 97 dbSNP
rs960924956 99 dbSNP
rs1034191163 100 dbSNP
rs1235724069 103 dbSNP
rs1403667070 106 dbSNP
rs959530546 112 dbSNP
rs992791762 113 dbSNP
rs916825620 117 dbSNP
rs1222135508 120 dbSNP
rs1413798662 126 dbSNP
rs948333498 127 dbSNP
rs376416853 134 dbSNP
rs1017180056 135 dbSNP
rs1393732030 136 dbSNP
rs1304173315 146 dbSNP
rs909252903 147 dbSNP
rs1428262510 149 dbSNP
rs1173987321 153 dbSNP
rs961647275 154 dbSNP
rs940743372 160 dbSNP
rs972354977 163 dbSNP
rs922302681 164 dbSNP
rs753241369 167 dbSNP
rs997370262 171 dbSNP
rs1050714898 174 dbSNP
rs1483697482 178 dbSNP
rs758618260 179 dbSNP
rs1341405038 180 dbSNP
rs985204158 183 dbSNP
rs1202143508 184 dbSNP
rs910964624 187 dbSNP
rs561763639 188 dbSNP
rs1238997724 190 dbSNP
rs1201457413 193 dbSNP
rs1396163052 194 dbSNP
rs1281360539 200 dbSNP
rs112823980 202 dbSNP
rs186461806 204 dbSNP
rs913144814 210 dbSNP
rs758804153 217 dbSNP
rs1157862307 222 dbSNP
rs544107394 226 dbSNP
rs564454670 231 dbSNP
rs945967351 239 dbSNP
rs1370184146 247 dbSNP
rs15969 249 dbSNP
rs546799342 250 dbSNP
rs1003561650 261 dbSNP
rs1375655708 262 dbSNP
rs1055183945 268 dbSNP
rs1477583620 271 dbSNP
rs998988646 271 dbSNP
rs1173078485 277 dbSNP
rs1285399299 278 dbSNP
rs560059648 281 dbSNP
rs1204999569 283 dbSNP
rs1349142146 291 dbSNP
rs75584090 295 dbSNP
rs139793938 315 dbSNP
rs747400749 316 dbSNP
rs1297711615 317 dbSNP
rs1017544730 318 dbSNP
rs961594408 321 dbSNP
rs1361272634 328 dbSNP
rs994351720 330 dbSNP
rs757532337 331 dbSNP
rs781241101 336 dbSNP
rs1392755880 340 dbSNP
rs1163822630 341 dbSNP
rs549058136 342 dbSNP
rs1161832997 348 dbSNP
rs1330823516 357 dbSNP
rs568872185 363 dbSNP
rs141552793 364 dbSNP
rs1277091095 365 dbSNP
rs144469801 366 dbSNP
rs755849631 367 dbSNP
rs989979636 369 dbSNP
rs1358028294 371 dbSNP
rs972527071 372 dbSNP
rs1230053786 374 dbSNP
rs571157170 378 dbSNP
rs1342431793 383 dbSNP
rs1269273273 392 dbSNP
rs923366016 400 dbSNP
rs1284642935 401 dbSNP
rs56790408 407 dbSNP
rs1050269206 408 dbSNP
rs945874180 412 dbSNP
rs888985182 413 dbSNP
rs1431776101 419 dbSNP
rs1420453290 424 dbSNP
rs1167605535 435 dbSNP
rs1474601634 436 dbSNP
rs981330302 439 dbSNP
rs115851421 446 dbSNP
rs1200714254 449 dbSNP
rs1043014281 453 dbSNP
rs1267465993 454 dbSNP
rs902823734 455 dbSNP
rs573068398 456 dbSNP
rs998518475 470 dbSNP
rs1437958110 475 dbSNP
rs1271792826 476 dbSNP
rs1035788709 477 dbSNP
rs1437694269 479 dbSNP
rs1158001173 483 dbSNP
rs1346778979 487 dbSNP
rs1283702258 493 dbSNP
rs780036948 495 dbSNP
rs1222730741 509 dbSNP
rs895566807 512 dbSNP
rs535565284 517 dbSNP
rs555397065 518 dbSNP
rs1290178669 531 dbSNP
rs1411713766 533 dbSNP
rs1355204300 534 dbSNP
rs1013116576 536 dbSNP
rs1055576249 538 dbSNP
rs1404697962 539 dbSNP
rs969529845 546 dbSNP
rs1062828 548 dbSNP
rs575334410 552 dbSNP
rs1016480962 553 dbSNP
rs941472224 555 dbSNP
rs962634826 565 dbSNP
rs1038468899 567 dbSNP
rs1470164175 569 dbSNP
rs570823261 576 dbSNP
rs994299365 579 dbSNP
rs923305577 580 dbSNP
rs933410611 582 dbSNP
rs544637888 594 dbSNP
rs1321214806 597 dbSNP
rs891411218 600 dbSNP
rs1290082731 604 dbSNP
rs1224298178 605 dbSNP
rs1374059806 614 dbSNP
rs1310648290 617 dbSNP
rs1440202753 618 dbSNP
rs1353784998 621 dbSNP
rs1241775245 622 dbSNP
rs1263282129 627 dbSNP
rs986627393 628 dbSNP
rs1006554571 644 dbSNP
rs910364172 653 dbSNP
rs1404403700 661 dbSNP
rs1018380803 669 dbSNP
rs35016835 681 dbSNP
rs1042939773 701 dbSNP
rs566602648 706 dbSNP
rs1174969322 711 dbSNP
rs934614910 716 dbSNP
rs990275544 721 dbSNP
rs1182618243 729 dbSNP
rs768525672 732 dbSNP
rs1269785850 740 dbSNP
rs1020061661 741 dbSNP
rs1316269907 747 dbSNP
rs1282115677 754 dbSNP
rs895481030 756 dbSNP
rs1210086749 758 dbSNP
rs1361711832 777 dbSNP
rs1269152852 782 dbSNP
rs967162016 787 dbSNP
rs1315951606 788 dbSNP
rs558199194 792 dbSNP
rs1012630251 802 dbSNP
rs773876014 803 dbSNP
rs1432014052 807 dbSNP
rs1441614933 808 dbSNP
rs564298510 819 dbSNP
rs1157617815 820 dbSNP
rs1162831253 821 dbSNP
rs1367994417 823 dbSNP
rs745953591 824 dbSNP
rs905340179 826 dbSNP
rs1006330160 830 dbSNP
rs928537085 833 dbSNP
rs1485451259 845 dbSNP
rs937280817 847 dbSNP
rs990825253 848 dbSNP
rs1361599574 849 dbSNP
rs1292608593 850 dbSNP
rs1398485406 851 dbSNP
rs769819680 853 dbSNP
rs1357543824 856 dbSNP
rs1298051298 858 dbSNP
rs962316676 867 dbSNP
rs867497115 869 dbSNP
rs1446588621 870 dbSNP
rs972759638 871 dbSNP
rs1332627402 877 dbSNP
rs1030297528 879 dbSNP
rs372675894 880 dbSNP
rs1301988838 881 dbSNP
rs1374416399 887 dbSNP
rs1170740488 893 dbSNP
rs986187217 897 dbSNP
rs1417136539 900 dbSNP
rs1192792037 908 dbSNP
rs1490489512 910 dbSNP
rs1268177016 911 dbSNP
rs775478422 913 dbSNP
rs1309897896 914 dbSNP
rs1253240937 926 dbSNP
rs1205525990 929 dbSNP
rs531990378 938 dbSNP
rs941390709 943 dbSNP
rs1244974721 947 dbSNP
rs1266853724 949 dbSNP
rs1225795017 957 dbSNP
rs1346666062 958 dbSNP
rs1283268370 959 dbSNP
rs1315819022 961 dbSNP
rs540120725 965 dbSNP
rs771795297 969 dbSNP
rs1458999695 972 dbSNP
rs199690546 977 dbSNP
rs978589842 980 dbSNP
rs1298329612 982 dbSNP
rs1352460607 986 dbSNP
rs1461186947 986 dbSNP
rs772713805 996 dbSNP
rs924475415 1019 dbSNP
rs1428488920 1024 dbSNP
rs930137531 1025 dbSNP
rs934563879 1029 dbSNP
rs148431584 1030 dbSNP
rs1189863202 1032 dbSNP
rs1196543130 1033 dbSNP
rs1480420526 1042 dbSNP
rs1249877226 1044 dbSNP
rs1205949470 1046 dbSNP
rs760000079 1048 dbSNP
rs1324746021 1052 dbSNP
rs1057421701 1058 dbSNP
rs529051832 1064 dbSNP
rs191357845 1067 dbSNP
rs562613922 1074 dbSNP
rs765692431 1081 dbSNP
rs1222228766 1093 dbSNP
rs1336958786 1101 dbSNP
rs775930809 1105 dbSNP
rs534802326 1116 dbSNP
rs1465406075 1120 dbSNP
rs948402572 1123 dbSNP
rs1044066402 1135 dbSNP
rs1470078864 1139 dbSNP
rs888176168 1140 dbSNP
rs1171888536 1143 dbSNP
rs1174092113 1156 dbSNP
rs1007580523 1160 dbSNP
rs1402933965 1162 dbSNP
rs1005297770 1163 dbSNP
rs1418631590 1166 dbSNP
rs1302780901 1167 dbSNP
rs1037825861 1168 dbSNP
rs1018540435 1169 dbSNP
rs1396161873 1171 dbSNP
rs1202235356 1176 dbSNP
rs764646448 1178 dbSNP
rs892768041 1180 dbSNP
rs76513233 1181 dbSNP
rs993724926 1184 dbSNP
rs1314634778 1186 dbSNP
rs1031014481 1192 dbSNP
rs1452921425 1196 dbSNP
rs955012613 1211 dbSNP
rs1007548298 1218 dbSNP
rs1017658592 1222 dbSNP
rs1157953974 1223 dbSNP
rs1020040287 1227 dbSNP
rs967161841 1239 dbSNP
rs1450419262 1240 dbSNP
rs924432132 1243 dbSNP
rs1445453549 1251 dbSNP
rs751731031 1252 dbSNP
rs1242840737 1254 dbSNP
rs551384972 1255 dbSNP
rs956087456 1257 dbSNP
rs1449144963 1261 dbSNP
rs1002690589 1263 dbSNP
rs1035552928 1267 dbSNP
rs761778910 1276 dbSNP
rs1293332007 1277 dbSNP
rs948661514 1280 dbSNP
rs571128393 1286 dbSNP
rs991792452 1290 dbSNP
rs1358277089 1291 dbSNP
rs1312511928 1299 dbSNP
rs540142906 1304 dbSNP
rs1326839278 1308 dbSNP
rs1317477280 1311 dbSNP
rs1380475771 1315 dbSNP
rs963000307 1322 dbSNP
rs373421320 1323 dbSNP
rs918669083 1324 dbSNP
rs1426140452 1327 dbSNP
rs377449263 1330 dbSNP
rs1431815711 1332 dbSNP
rs1320330675 1336 dbSNP
rs930083823 1337 dbSNP
rs1175955353 1339 dbSNP
rs1036743483 1347 dbSNP
rs897969122 1347 dbSNP
rs1360313762 1353 dbSNP
rs142918571 1354 dbSNP
rs1477118658 1360 dbSNP
rs912691076 1367 dbSNP
rs1271759786 1372 dbSNP
rs1314129761 1373 dbSNP
rs576468844 1382 dbSNP
rs1287258563 1383 dbSNP
rs535700175 1387 dbSNP
rs1398936138 1392 dbSNP
rs890701696 1394 dbSNP
rs768615549 1400 dbSNP
rs552184697 1401 dbSNP
rs746084646 1405 dbSNP
rs764065185 1408 dbSNP
rs555533349 1411 dbSNP
rs1347291019 1418 dbSNP
rs1017585073 1420 dbSNP
rs553106871 1421 dbSNP
rs968710075 1426 dbSNP
rs1411878719 1430 dbSNP
rs750610288 1434 dbSNP
rs574691159 1444 dbSNP
rs151102399 1445 dbSNP
rs1464425920 1447 dbSNP
rs1041431232 1450 dbSNP
rs1432050312 1450 dbSNP
rs1200822663 1452 dbSNP
rs1235353976 1461 dbSNP
rs1244495190 1468 dbSNP
rs1183435546 1470 dbSNP
rs756297772 1472 dbSNP
rs1196505988 1475 dbSNP
rs1271901793 1475 dbSNP
rs1325454100 1477 dbSNP
rs1000260185 1479 dbSNP
rs1222826877 1480 dbSNP
rs1366927992 1481 dbSNP
rs180891962 1482 dbSNP
rs1217541680 1486 dbSNP
rs1002597220 1493 dbSNP
rs139964180 1497 dbSNP
rs753584802 1498 dbSNP
rs993050471 1510 dbSNP
rs1177717327 1513 dbSNP
rs1487706874 1514 dbSNP
rs1024180052 1516 dbSNP
rs1159763638 1517 dbSNP
rs577915633 1518 dbSNP
rs540522635 1519 dbSNP
rs1243541984 1522 dbSNP
rs1016587730 1525 dbSNP
rs963365090 1531 dbSNP
rs974025344 1532 dbSNP
rs1435386246 1534 dbSNP
rs1310359866 1539 dbSNP
rs1157390840 1541 dbSNP
rs1377885400 1543 dbSNP
rs774087836 1556 dbSNP
rs1286302872 1561 dbSNP
rs1225516127 1562 dbSNP
rs1418625531 1565 dbSNP
rs909513011 1566 dbSNP
rs918615187 1568 dbSNP
rs1298432670 1577 dbSNP
rs1346643098 1588 dbSNP
rs941048301 1590 dbSNP
rs1385339550 1593 dbSNP
rs972454961 1594 dbSNP
rs918313733 1595 dbSNP
rs754935825 1596 dbSNP
rs1292684811 1605 dbSNP
rs1368073782 1609 dbSNP
rs933796555 1610 dbSNP
rs1052356709 1614 dbSNP
rs986822417 1617 dbSNP
rs1446068992 1624 dbSNP
rs912647672 1625 dbSNP
rs890637624 1627 dbSNP
rs1182712637 1630 dbSNP
rs1442923579 1631 dbSNP
rs1307004403 1633 dbSNP
rs1482179078 1637 dbSNP
rs184901581 1644 dbSNP
rs1039914084 1645 dbSNP
rs904498457 1654 dbSNP
rs144961310 1655 dbSNP
rs1000181826 1656 dbSNP
rs368590565 1658 dbSNP
rs1014373216 1659 dbSNP
rs535694011 1663 dbSNP
rs969866343 1670 dbSNP
rs902828538 1671 dbSNP
rs1360510202 1686 dbSNP
rs1295807429 1687 dbSNP
rs1247589459 1689 dbSNP
rs562650999 1689 dbSNP
rs962625815 1695 dbSNP
rs1177300495 1701 dbSNP
rs1421789556 1707 dbSNP
rs1421409983 1708 dbSNP
rs1238177560 1713 dbSNP
rs1002543121 1719 dbSNP
rs189765708 1720 dbSNP
rs933701026 1723 dbSNP
rs1158780686 1729 dbSNP
rs1409558028 1730 dbSNP
rs894260174 1733 dbSNP
rs747738265 1740 dbSNP
rs183136908 1741 dbSNP
rs1292727425 1743 dbSNP
rs1221120026 1749 dbSNP
rs771465902 1753 dbSNP
rs564907390 1755 dbSNP
rs1350189647 1760 dbSNP
rs1215592173 1763 dbSNP
rs1340417411 1764 dbSNP
rs557217917 1765 dbSNP
rs1276912618 1767 dbSNP
rs951342452 1772 dbSNP
rs147961535 1777 dbSNP
rs1345626843 1781 dbSNP
rs1456054633 1782 dbSNP
rs943533802 1787 dbSNP
rs1170847228 1788 dbSNP
rs547369126 1789 dbSNP
rs1464951547 1793 dbSNP
rs986770066 1795 dbSNP
rs566866722 1799 dbSNP
rs964186189 1803 dbSNP
rs1269711333 1804 dbSNP
rs777548676 1805 dbSNP
rs187855052 1813 dbSNP
rs936304533 1814 dbSNP
rs1205631336 1817 dbSNP
rs1227900724 1818 dbSNP
rs370016708 1821 dbSNP
rs1256669391 1824 dbSNP
rs947556293 1825 dbSNP
rs1299989475 1826 dbSNP
rs977631562 1826 dbSNP
rs924864582 1827 dbSNP
rs1384615767 1837 dbSNP
rs2308135 1847 dbSNP
rs397698177 1847 dbSNP
rs34099865 1848 dbSNP
rs72516067 1848 dbSNP
rs1445721160 1849 dbSNP
rs1014714350 1851 dbSNP
rs1024411071 1852 dbSNP
rs200625399 1852 dbSNP
rs569071765 1854 dbSNP
rs1471529664 1863 dbSNP
rs538344090 1871 dbSNP
rs1377066508 1872 dbSNP
rs543020717 1875 dbSNP
rs201730473 1880 dbSNP
rs948525799 1882 dbSNP
rs1001305980 1885 dbSNP
rs1016762759 1889 dbSNP
rs1457542853 1891 dbSNP
rs1236743728 1893 dbSNP
rs962596066 1895 dbSNP
rs1037868611 1911 dbSNP
rs1324860726 1924 dbSNP
rs994107229 1933 dbSNP
rs1230379022 1947 dbSNP
rs1318231011 1956 dbSNP
rs1462790720 1965 dbSNP
rs1025694686 1966 dbSNP
rs898978659 1968 dbSNP
rs993290645 1973 dbSNP
rs1374268240 1980 dbSNP
rs1338448958 1988 dbSNP
rs1453153939 1993 dbSNP
rs1026153547 1996 dbSNP
rs955087055 2005 dbSNP
rs557917363 2007 dbSNP
rs571709866 2008 dbSNP
rs770647497 2017 dbSNP
rs1159412448 2020 dbSNP
rs1168333161 2028 dbSNP
rs1399299034 2030 dbSNP
rs910963296 2034 dbSNP
rs963809735 2039 dbSNP
rs1378745516 2044 dbSNP
rs974902383 2056 dbSNP
rs533978087 2058 dbSNP
rs554193036 2059 dbSNP
rs1256026557 2062 dbSNP
rs1019642647 2064 dbSNP
rs1486529907 2065 dbSNP
rs574012226 2068 dbSNP
rs1330829756 2076 dbSNP
rs975501890 2081 dbSNP
rs1022130500 2083 dbSNP
rs1316770813 2089 dbSNP
rs1246370673 2096 dbSNP
rs968839424 2100 dbSNP
rs1339688983 2116 dbSNP
rs538169547 2125 dbSNP
rs926141787 2140 dbSNP
rs977621735 2144 dbSNP
rs1383863473 2149 dbSNP
rs924856041 2151 dbSNP
rs61740430 2181 dbSNP
rs1053374748 2188 dbSNP
rs747538049 2200 dbSNP
rs1473294814 2202 dbSNP
rs776018733 2206 dbSNP
rs992890045 2210 dbSNP
rs191764349 2216 dbSNP
rs905954974 2219 dbSNP
rs1215228147 2221 dbSNP
rs1487032898 2223 dbSNP
rs1293443830 2226 dbSNP
rs1222773830 2228 dbSNP
rs1355307136 2231 dbSNP
rs763380682 2237 dbSNP
rs1229393452 2242 dbSNP
rs1326931699 2243 dbSNP
rs1277516177 2244 dbSNP
rs948407793 2246 dbSNP
rs898332066 2252 dbSNP
rs994468989 2254 dbSNP
rs1198011257 2255 dbSNP
rs1406161133 2256 dbSNP
rs1037414540 2263 dbSNP
rs1025574970 2267 dbSNP
rs1277188528 2270 dbSNP
rs1390377319 2274 dbSNP
rs1161791681 2282 dbSNP
rs576116368 2283 dbSNP
rs929132927 2287 dbSNP
rs1193607269 2292 dbSNP
rs955504922 2295 dbSNP
rs1270427435 2299 dbSNP
rs769338424 2302 dbSNP
rs774707678 2305 dbSNP
rs545092293 2309 dbSNP
rs777057347 2311 dbSNP
rs1257752255 2313 dbSNP
rs1197284361 2315 dbSNP
rs1318375261 2320 dbSNP
rs1257270993 2327 dbSNP
rs564879630 2329 dbSNP
rs527372971 2334 dbSNP
rs1285269769 2348 dbSNP
rs1437328869 2359 dbSNP
rs141518325 2370 dbSNP
rs1321851008 2373 dbSNP
rs890361463 2385 dbSNP
rs1422583840 2390 dbSNP
rs1017990798 2397 dbSNP
rs762019794 2401 dbSNP
rs1170516062 2404 dbSNP
rs979182388 2405 dbSNP
rs75258454 2407 dbSNP
rs957578643 2408 dbSNP
rs1477422575 2411 dbSNP
rs899795369 2422 dbSNP
rs1244581967 2425 dbSNP
rs1183543874 2427 dbSNP
rs1196600980 2429 dbSNP
rs1413960329 2429 dbSNP
rs989439023 2432 dbSNP
rs1334866148 2433 dbSNP
rs529556706 2434 dbSNP
rs1377388711 2435 dbSNP
rs549222433 2435 dbSNP
rs1279302017 2438 dbSNP
rs1398314471 2452 dbSNP
rs537178541 2458 dbSNP
rs997262399 2460 dbSNP
rs1021710943 2463 dbSNP
rs913471920 2470 dbSNP
rs1273228412 2473 dbSNP
rs1242603832 2486 dbSNP
rs569435070 2490 dbSNP
rs1230161859 2493 dbSNP
rs1045701369 2496 dbSNP
rs999006386 2501 dbSNP
rs1408879018 2502 dbSNP
rs531855647 2506 dbSNP
rs937389067 2513 dbSNP
rs551940799 2521 dbSNP
rs1038436884 2526 dbSNP
rs898295791 2537 dbSNP
rs1446245774 2541 dbSNP
rs960206273 2541 dbSNP
rs994004571 2544 dbSNP
rs1209335977 2547 dbSNP
rs1441854707 2549 dbSNP
rs183598053 2554 dbSNP
rs1280366687 2573 dbSNP
rs10531623 2574 dbSNP
rs754991896 2574 dbSNP
rs762149030 2574 dbSNP
rs752491823 2577 dbSNP
rs916149103 2577 dbSNP
rs188249723 2579 dbSNP
rs1285242760 2581 dbSNP
rs1262107865 2586 dbSNP
rs753670002 2589 dbSNP
rs1319685671 2591 dbSNP
rs1000592771 2595 dbSNP
rs973510895 2609 dbSNP
rs956690112 2610 dbSNP
rs192531199 2611 dbSNP
rs1195128505 2617 dbSNP
rs1181124477 2618 dbSNP
rs1471766891 2626 dbSNP
rs567630992 2632 dbSNP
rs536561520 2638 dbSNP
rs1047483544 2645 dbSNP
rs753428746 2647 dbSNP
rs1285497601 2650 dbSNP
rs758925549 2653 dbSNP
rs1323793307 2662 dbSNP
rs1291036078 2663 dbSNP
rs927274991 2665 dbSNP
rs1280679292 2671 dbSNP
rs1400033989 2673 dbSNP
rs1396902152 2678 dbSNP
rs1038917634 2680 dbSNP
rs1295897051 2694 dbSNP
rs1418000423 2696 dbSNP
rs1350177350 2697 dbSNP
rs534165328 2701 dbSNP
rs900451762 2718 dbSNP
rs1158265214 2720 dbSNP
rs1163768466 2730 dbSNP
rs937356658 2733 dbSNP
rs996856533 2740 dbSNP
rs1384252534 2741 dbSNP
rs1421522852 2754 dbSNP
rs1171307526 2757 dbSNP
rs556452673 2758 dbSNP
rs1043103862 2763 dbSNP
rs1437724300 2768 dbSNP
rs1247562385 2770 dbSNP
rs1221238561 2778 dbSNP
rs920006744 2780 dbSNP
rs930093774 2785 dbSNP
rs1306348467 2799 dbSNP
rs576285596 2802 dbSNP
rs1349415381 2803 dbSNP
rs1237375164 2804 dbSNP
rs1284840323 2809 dbSNP
rs1388049814 2817 dbSNP
rs904593612 2818 dbSNP
rs1292605048 2833 dbSNP
rs1433950074 2840 dbSNP
rs1206564330 2845 dbSNP
rs1402214400 2848 dbSNP
rs998909811 2848 dbSNP
rs1171198141 2851 dbSNP
rs1465036658 2860 dbSNP
rs1264924248 2864 dbSNP
rs559536327 2864 dbSNP
rs960195396 2865 dbSNP
rs1014843105 2867 dbSNP
rs1023206495 2870 dbSNP
rs147037681 2872 dbSNP
rs1487674345 2873 dbSNP
rs1240396001 2875 dbSNP
rs943895608 2879 dbSNP
rs1457686538 2890 dbSNP
rs1256766836 2893 dbSNP
rs1254883888 2898 dbSNP
rs973023269 2900 dbSNP
rs920235155 2907 dbSNP
rs950407200 2911 dbSNP
rs983126768 2912 dbSNP
rs1217102795 2917 dbSNP
rs548438234 2931 dbSNP
rs1331756564 2933 dbSNP
rs944548709 2935 dbSNP
rs1445841924 2943 dbSNP
rs1161681930 2952 dbSNP
rs1397967123 2952 dbSNP
rs1304548504 2960 dbSNP
rs757625991 2962 dbSNP
rs1039318551 2963 dbSNP
rs558704413 2965 dbSNP
rs1175519701 2966 dbSNP
rs1032446923 2969 dbSNP
rs1328480469 2975 dbSNP
rs1382442011 2982 dbSNP
rs1179625830 2984 dbSNP
rs145227455 2985 dbSNP
rs946654808 2997 dbSNP
rs573393 3003 dbSNP
rs1009739610 3008 dbSNP
rs1307853791 3011 dbSNP
rs1483899358 3012 dbSNP
rs1254898254 3016 dbSNP
rs1020413549 3020 dbSNP
rs1176854135 3026 dbSNP
rs1355382870 3030 dbSNP
rs184213147 3033 dbSNP
rs1335839669 3036 dbSNP
rs563409642 3037 dbSNP
rs1396520726 3041 dbSNP
rs981632300 3046 dbSNP
rs1034554301 3048 dbSNP
rs1432992654 3061 dbSNP
rs1263367504 3063 dbSNP
rs530849940 3064 dbSNP
rs1355367462 3065 dbSNP
rs958973018 3077 dbSNP
rs560557800 3078 dbSNP
rs76649937 3081 dbSNP
rs934651255 3083 dbSNP
rs758288732 3085 dbSNP
rs777162355 3086 dbSNP
rs1053159809 3096 dbSNP
rs1256134322 3100 dbSNP
rs930040462 3103 dbSNP
rs983272188 3107 dbSNP
rs895920027 3109 dbSNP
rs1014420609 3122 dbSNP
rs1039586082 3128 dbSNP
rs899732524 3138 dbSNP
rs936611801 3141 dbSNP
rs1053423562 3144 dbSNP
rs1023577161 3145 dbSNP
rs1251249657 3146 dbSNP
rs1412969817 3147 dbSNP
rs906046037 3149 dbSNP
rs1298943880 3155 dbSNP
rs892128953 3159 dbSNP
rs1383128704 3160 dbSNP
rs553968541 3162 dbSNP
rs1368156934 3163 dbSNP
rs1368361470 3166 dbSNP
rs149176580 3173 dbSNP
rs2501 3176 dbSNP
rs1046586030 3179 dbSNP
rs950355442 3180 dbSNP
rs2500 3182 dbSNP
rs906322092 3185 dbSNP
rs1192381392 3186 dbSNP
rs1444890399 3188 dbSNP
rs1002979880 3189 dbSNP
rs1269081931 3193 dbSNP
rs2502 3193 dbSNP
rs1355418043 3195 dbSNP
rs1034521994 3196 dbSNP
rs532015715 3219 dbSNP
rs1318603377 3220 dbSNP
rs958942311 3221 dbSNP
rs186663051 3227 dbSNP
rs1324863104 3228 dbSNP
rs1465506379 3229 dbSNP
rs1387643970 3236 dbSNP
rs1390487743 3236 dbSNP
rs1324362520 3240 dbSNP
rs1425020451 3247 dbSNP
rs773923821 3247 dbSNP
rs1018694411 3248 dbSNP
rs1169312636 3250 dbSNP
rs374913202 3250 dbSNP
rs201887590 3252 dbSNP
rs35370272 3252 dbSNP
rs386374037 3252 dbSNP
rs386374038 3252 dbSNP
rs1491040783 3255 dbSNP
rs386362446 3256 dbSNP
rs1200349985 3257 dbSNP
rs75163788 3257 dbSNP
rs753805210 3257 dbSNP
rs1396579057 3258 dbSNP
rs200629390 3259 dbSNP
rs1310094685 3261 dbSNP
rs921730744 3262 dbSNP
rs77034799 3267 dbSNP
rs951477848 3267 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aggaugggucccgugucuACCCCGu 5'
                            |||||| 
Target 5' ---acuacaaauaaaacuUGGGGCa 3'
1 - 22
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10432.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10432.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_006328 | 3UTR | GAGCCUACUGGGGCAAGGCGACUGGGGAGGUGUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000393979.3 | 3UTR | ACUACAAAUAAAACUUGGGGCAAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000393979.3 | 3UTR | ACUACAAAUAAAACUUGGGGCAAUUUGCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000393979.3 | 3UTR | ACUACAAAUAAAACUUGGGGCAAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000393979.3 | 3UTR | ACUACAAAUAAAACUUGGGGCAAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000393979.3 | 3UTR | GUAUGGACUACAAAUAAAACUUGGGGCAAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
54 hsa-miR-3189-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055405 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT263576 GHITM growth hormone inducible transmembrane protein 2 2
MIRT338983 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT404222 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT451745 CES3 carboxylesterase 3 2 2
MIRT454466 RBM14 RNA binding motif protein 14 2 8
MIRT477627 EFNA1 ephrin A1 2 2
MIRT495128 METTL24 methyltransferase like 24 2 2
MIRT496506 G6PC glucose-6-phosphatase catalytic subunit 2 2
MIRT497260 GRK6 G protein-coupled receptor kinase 6 2 2
MIRT501881 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT504586 ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 2 4
MIRT505570 SMC1A structural maintenance of chromosomes 1A 2 6
MIRT506759 KMT2D lysine methyltransferase 2D 2 2
MIRT512454 POLR3G RNA polymerase III subunit G 2 2
MIRT512716 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT514382 CLUAP1 clusterin associated protein 1 2 2
MIRT519861 ZFP62 ZFP62 zinc finger protein 2 6
MIRT525670 NHLRC4 NHL repeat containing 4 2 2
MIRT526359 TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 2 2
MIRT526656 PRSS42 protease, serine 42 2 4
MIRT527017 PABPN1L poly(A) binding protein nuclear 1 like, cytoplasmic 2 2
MIRT532190 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT533223 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT543161 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT552228 SART3 squamous cell carcinoma antigen recognized by T-cells 3 2 2
MIRT552719 YTHDC1 YTH domain containing 1 2 2
MIRT556873 IVNS1ABP influenza virus NS1A binding protein 2 2
MIRT558255 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT563105 IFRD2 interferon related developmental regulator 2 2 2
MIRT565436 SURF4 surfeit 4 2 2
MIRT568459 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT572804 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT576203 Baz2a bromodomain adjacent to zinc finger domain, 2A 2 2
MIRT623519 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT637006 HHAT hedgehog acyltransferase 2 2
MIRT643668 WDR5 WD repeat domain 5 2 2
MIRT647472 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT650823 LZTR1 leucine zipper like transcription regulator 1 2 2
MIRT657377 HMGA1 high mobility group AT-hook 1 2 2
MIRT685077 HPSE heparanase 2 2
MIRT687565 MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 2 2
MIRT696101 SETD1A SET domain containing 1A 2 2
MIRT704887 CCND1 cyclin D1 2 2
MIRT709133 GLG1 golgi glycoprotein 1 2 2
MIRT709189 SAPCD2 suppressor APC domain containing 2 2 2
MIRT713407 PEX16 peroxisomal biogenesis factor 16 2 2
MIRT713467 SLC22A12 solute carrier family 22 member 12 2 2
MIRT714544 COL14A1 collagen type XIV alpha 1 chain 2 2
MIRT716953 TFAP2B transcription factor AP-2 beta 2 2
MIRT717325 PGK1 phosphoglycerate kinase 1 2 2
MIRT718252 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT718522 WDR33 WD repeat domain 33 2 2
MIRT723002 FADS1 fatty acid desaturase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3189 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-3189-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-3189-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3189-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

Error report submission