pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KDM5C   
Synonyms DXS1272E, JARID1C, MRX13, MRXJ, MRXSCJ, MRXSJ, SMCX, XE169
Description lysine demethylase 5C
Transcript NM_004187   
Other Transcripts NM_001146702   
Expression
Putative miRNA Targets on KDM5C
3'UTR of KDM5C
(miRNA target sites are highlighted)
>KDM5C|NM_004187|3'UTR
   1 CAGTGGCTGAGCCTAGCACAGACCCTGACAGAGACCCCCCTCGGCCTCAAGGATCCTCTTTCTGACCATCAAGCCTGCTT
  81 CTTGGGGGGTGGGCGGGTAGGGGGGTGGCCATCCCTGCTACCCGCCCACCCCTGAGTCCCTTGACTTTTGTATTCTGACT
 161 CCAAGGTATTGTTCAGACCTCAGCTCCTGGGGGCCGGCCCCTGGAGTCTTCCCTCCCTGGTAGCCTCTAACCAGCATTCC
 241 CAGACACCTGAGGCAGATAGATGGATGGGCTGGTGGGCAGGGGGGTGGCTGGGGCTGGGCCATCACCATTCCAGAGACAA
 321 GGCCAGTGTATATGCAAACTGGGGGACTCTCCTCCCTTCTCTCCCCAGTTCTGGTCCTGGCCAGGCCATGCTACACTAAC
 401 CCCTGCCCCCACTCTCCTCCCCTCTTTTCCTTCCTTCCTACCCCCTTCTCCCTCTCCCTTCCCCTGACTGTTCCACCCAG
 481 GAGGAGGAAACTTCACATAGCCGTGCTCACAGTTTTTTATTTTAAAGGAATTTGGCTGGGGAGCTGAACAGGGCTCCCTG
 561 TGATCTGAAGAAAGCTTTTGGTGCTTGTCCTCACAACCACCTCAGTCCTCCCTCCCTGTCCTCCCCTGTCTCCTTTCCTC
 641 CTCCTGGGTTCATGTTGTAATAAAAGAAGATTGTTGGTGTGTAATTAATTTGTTCAAAAGAAAAAAAAAAGCAAAACAAG
 721 AAACTTGGTTCCAACTGAAGCCTATTTTAATTTTATTTTATTATTTTCCTCTTGTTAGAAATAAAACCCTTAGAAACATT
 801 TTTTGGAAACATGTTTCTGAAGTGCATTTCTCTTAGACGGGGAAGACAGTGCTTCCATCACCAGTCAGTGGAGCAGCTGT
 881 AGTGCTGGCAGGAGCACTAGGGCTGAAGCCAGGGAGCTCTGGGTTCTGAAATCAAGTTCCACCAGCTTCTTAACCTTGGG
 961 CAAGACATTCTGATCCTCCCCCGACTCTAACCCCAAGCCACTTTCCCTCAAGTCCAAACAGATGGGCTCGGGCCCCCTCA
1041 CCCAAACTCCTACACTACAACCTCCCCCAGTTGATGCCCTCCAGTTTATCCTCCTCAAGCTCCCAAAGGGATTTTTTTGT
1121 TAATGGCTTTATTGAGATATAATTTACATACTATAAAATTCACTTGTTTGAAATGTACAATTCAGTGATTTGGGGGGTTT
1201 CTAAAGTGTAGATCTGATTATATACTGCTTAAAACCTTCCATGATGCTTTATTGCCCTTAAGATTATACATAGAATCTCG
1281 TTCTTCCTAGAATGTTTTCCTGTCTAACCCATCTACTGCATAATTCCCTGATTTTTCTCCACAGGTTATGCCCCTGATGA
1361 ATGGGGACTAAAGCTCAGATGTGTGGTCATTTGCAACCCCTGAGTTCACTTTTTTAAGACAGCTTATTGATATATATAAT
1441 GTACATACCATACAGTCACCCACTTAAAAGTATACAATTAAATAGCTTTTAGTATATTCAGAGTTGTGCAGCCATCATTC
1521 GAAAAAAAATTTCAGAACATTTTCATCACTGCAGAAAGAAACTCCATATCCCTTAGGCGTCCTTTACCCCTCATCCCATT
1601 TGCCTATTCTGGACATTTTACATAAATGGAATCGTATAATATGTGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUUCUGGUUCGGAGGAAGGGa 5'
            ||  ||||||| |:||||| 
Target 5' ctAACCCCAAGCCACTTTCCCt 3'
987 - 1008 160.00 -25.50
2
miRNA  3' gauucuGGUUCGGAGGAAGGGa 5'
                ||  |:||||||:|| 
Target 5' gtcctcCCCTGTCTCCTTTCCt 3'
618 - 639 144.00 -22.10
3
miRNA  3' gauucugguucGGAGGAAGGGa 5'
                     |: ||||||| 
Target 5' cccttctccctCTCCCTTCCCc 3'
443 - 464 143.00 -14.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1183224 109 ClinVar
638505 129 ClinVar
810608 130 ClinVar
134590 132 ClinVar
444806 198 ClinVar
1207328 361 ClinVar
1181456 491 ClinVar
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1208494015 4 dbSNP
rs1262967902 6 dbSNP
rs1449219860 9 dbSNP
rs1197454076 11 dbSNP
rs782749834 12 dbSNP
rs1377105835 18 dbSNP
rs782008479 25 dbSNP
rs1480832525 35 dbSNP
rs782318525 40 dbSNP
rs1178792251 41 dbSNP
rs1410074140 41 dbSNP
rs782183274 42 dbSNP
rs781971436 43 dbSNP
rs1288088245 62 dbSNP
rs1385476778 76 dbSNP
rs1383850206 83 dbSNP
rs782341771 84 dbSNP
rs1321551882 85 dbSNP
rs372057894 86 dbSNP
rs782381464 90 dbSNP
rs782647013 90 dbSNP
rs782275907 94 dbSNP
rs782215470 95 dbSNP
rs782444646 97 dbSNP
rs781849827 99 dbSNP
rs782360019 101 dbSNP
rs782003345 102 dbSNP
rs782372607 103 dbSNP
rs146836963 106 dbSNP
rs150558161 106 dbSNP
rs868923717 106 dbSNP
rs782736952 107 dbSNP
rs1201690300 109 dbSNP
rs1249821741 109 dbSNP
rs782563897 109 dbSNP
rs1472380143 114 dbSNP
rs1160198376 116 dbSNP
rs782524525 123 dbSNP
rs781897787 124 dbSNP
rs1161346740 125 dbSNP
rs782201442 130 dbSNP
rs868982577 131 dbSNP
rs781910906 132 dbSNP
rs1348155280 133 dbSNP
rs904938578 137 dbSNP
rs782737610 155 dbSNP
rs782082388 158 dbSNP
rs782001639 159 dbSNP
rs1307323422 171 dbSNP
rs782378981 179 dbSNP
rs782299839 191 dbSNP
rs782016647 195 dbSNP
rs1243109221 196 dbSNP
rs782326659 201 dbSNP
rs1024754603 205 dbSNP
rs1291607611 213 dbSNP
rs1013651789 217 dbSNP
rs1360809304 231 dbSNP
rs897509559 241 dbSNP
rs35502347 249 dbSNP
rs1225443658 263 dbSNP
rs1272569275 263 dbSNP
rs1480373800 272 dbSNP
rs782662227 284 dbSNP
rs1177977342 306 dbSNP
rs1252961394 313 dbSNP
rs1420617824 319 dbSNP
rs1185154794 341 dbSNP
rs1384440594 343 dbSNP
rs782566471 344 dbSNP
rs1425214097 347 dbSNP
rs1004477853 351 dbSNP
rs1368133501 354 dbSNP
rs888578279 355 dbSNP
rs1461063778 356 dbSNP
rs1048589544 359 dbSNP
rs139342680 361 dbSNP
rs1394592970 367 dbSNP
rs1314782205 368 dbSNP
rs1384083489 376 dbSNP
rs782663215 380 dbSNP
rs1306945023 384 dbSNP
rs1205352594 388 dbSNP
rs1253227928 395 dbSNP
rs1482389436 402 dbSNP
rs1203346555 405 dbSNP
rs1242267305 411 dbSNP
rs1445067006 413 dbSNP
rs1185290515 414 dbSNP
rs1041161088 420 dbSNP
rs1417334533 422 dbSNP
rs1427338289 423 dbSNP
rs1170550567 426 dbSNP
rs782478973 440 dbSNP
rs944015296 441 dbSNP
rs1407275904 444 dbSNP
rs1454940183 451 dbSNP
rs1319087610 459 dbSNP
rs913917275 463 dbSNP
rs1215726454 465 dbSNP
rs1310556837 466 dbSNP
rs17002644 491 dbSNP
rs1461570589 502 dbSNP
rs782710645 522 dbSNP
rs1205337016 528 dbSNP
rs1240226890 536 dbSNP
rs957953142 538 dbSNP
rs925243360 546 dbSNP
rs1420991795 562 dbSNP
rs1479200463 566 dbSNP
rs1175207299 574 dbSNP
rs980565560 576 dbSNP
rs969273014 580 dbSNP
rs1471124734 584 dbSNP
rs1316658496 592 dbSNP
rs1345035147 597 dbSNP
rs1432068396 599 dbSNP
rs782530738 601 dbSNP
rs781899618 608 dbSNP
rs1404443055 612 dbSNP
rs1284085658 624 dbSNP
rs1325943512 625 dbSNP
rs1226856322 628 dbSNP
rs782437632 628 dbSNP
rs782751699 633 dbSNP
rs183756075 654 dbSNP
rs1025121222 657 dbSNP
rs1316164737 664 dbSNP
rs1216384789 677 dbSNP
rs1243801658 695 dbSNP
rs1489617105 700 dbSNP
rs1198076814 701 dbSNP
rs1156483593 711 dbSNP
rs1269086488 711 dbSNP
rs1481208384 711 dbSNP
rs781950484 711 dbSNP
rs1401671544 716 dbSNP
rs1013348840 717 dbSNP
rs1161862033 738 dbSNP
rs1364255532 754 dbSNP
rs1424033559 763 dbSNP
rs1303824459 774 dbSNP
rs961979745 792 dbSNP
rs868979258 796 dbSNP
rs1279243678 802 dbSNP
rs1372284505 804 dbSNP
rs1224163651 805 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucGGAGGAAGGGa 5'
                     |: ||||||| 
Target 5' --cuucucccuCUCCCUUCCCc 3'
1 - 20
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001146702 | 3UTR | UCCCUUCCCCUGACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001146702 | 3UTR | UCCCUUCCCCUGACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000375401.3 | 3UTR | CUUCUCCCUCUCCCUUCCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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