miRTarBase - #MIRT455790


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pre-miRNA Information
pre-miRNA hsa-mir-1247   
Genomic Coordinates chr14: 101560287 - 101560422
Synonyms MIRN1247, hsa-mir-1247, MIR1247
Description Homo sapiens miR-1247 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1247-3p
Sequence 74| CCCCGGGAACGUCGAGACUGGAGC |97
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs765946490 1 dbSNP
rs1167774642 3 dbSNP
rs369874810 4 dbSNP
rs1295169065 5 dbSNP
rs1368557653 7 dbSNP
rs375254504 10 dbSNP
rs1049152389 16 dbSNP
rs774601647 21 dbSNP
rs1317190334 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TAF8   
Synonyms II, TAF, TAFII-43, TAFII43, TBN
Description TATA-box binding protein associated factor 8
Transcript NM_138572   
Expression
Putative miRNA Targets on TAF8
3'UTR of TAF8
(miRNA target sites are highlighted)		 
>TAF8|NM_138572|3'UTR
   1 GCTGAGAAGGAAACCTGGCTTGTACAGGGGCGCAGATTCCACCCTCCCGGGGAGTTAAAGCCACTCAAGGGAAGAAGAGG
  81 GTGACCTCCTCATGGCCAAGCCGAGGCTGCAGGGTGTGATCGGACATGATTTTCATGGCAAACCGTCTTATTAAGATGAC
 161 CTATTTTCACTGGATGTTTGGGTTGAGGAAGATATGAACAGAATAATGAGAATTTTTTTTTTTATTTTGAGATGGAGTCT
 241 TACTCTATCACCCAGGCTGGAATGCAGTGGTGTGATCTCAGCTCACTGCAGTCTCAGCAACCCTGGGTCCAAGTGATTCT
 321 CCTGCCTTGGCCTCCCGAGTAGCTGGGACTAGAGGCAAGCGCCACCATGCTGGCTAATTTTTGTATTTTGAGTAGAGATA
 401 GGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCGCATTGGCCTCCCAAAGAGTTGC
 481 GATTACAGGTGTGAGCCACCACGCCCAGCTAATTTTTGTATTTTTAATAGAGATAAGGTTTCGCCATGTTGGCCAGGCTG
 561 GTCTTGAACTCCTGACCTCAAGTGATAACCCGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACCGCACCC
 641 CACCAGAGACTTTCTTAATCAATCAGGCTATGTGGTGGGGCATAGCAGCAGCCAGTGACTTCGTTCATTATCACAGGATT
 721 TGATTCCTTTGAAACTCAAGAGACCAGGGAAAGTGACAGGAAGGAAAGGGCTCTTTGCTGCTGTGCTTATTACAAGGAAG
 801 ACTGTTTGTCCAGCGTGTATTTCAGGATATCTGGATCCCTTTTATTGACTCACAATTTGTGGCACCACTTTCTCATCCCA
 881 GAACTTCATTCTTATTTCTCTCCTCATCTGGCCTCCCAAGTGCTCCGTTGAGCTGATGAAAAGTTCTTTGTACTCCCTCA
 961 ACGTGTCGGAAACAGGAGGCCACACAGCACAGCTTTGTTTGGGGTGGGCAGGAGTCAGGAGTCTTGAGCAGATGCATCAC
1041 TGTGAAGAAGAACGACATGTCGGGGCTGCACCTGTCCTCCCGTCGGCATTTGACGAAAGCTCCCTGAAGCGGGGCAGCAC
1121 TCTCCTCCTGAGAGATTTACCATTTATTGCCCCTGTGAGGAATGTGTGCTTGGGAACTGCCAAGTCTTACCCCTTCTGGA
1201 AGAAGAGGTTTTCTCTGACAAGAGCCTAGAGCGTCGGCTCTATTATGCTGGGACTTGACAGAGGAGCCATGGGGTTTAAA
1281 CAGTAGGAAAGAGGGGCTACGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCGAAGGCAGGTGGATCACTT
1361 GAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTG
1441 GTTACTCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGT
1521 GAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATTTCAAAAAAATAAAAAAAGGATAAAGT
1601 AAACAATAGGAAAGGATTTGGTGGGGTGAGGGTGGGGTGTTGAGGGCTGGGCCTCATCTTGTATTCTGAAAGCTGAGAAA
1681 CGGCTGGTCAGCTGGAAGGCTGGTGGATGGGCAGGAGTGAGCCAAGCTGAGGCGTTCTGCAAGAAGCAGGTCTGAGTCTG
1761 TCCAACCAATTTGTATCCTGTGGGGAGAACAACTTCATTCTTAACATACCCTACAAACCAGAAAACAAGTTTTTAAGGAA
1841 GATGCTGGGCATGCTGATAGCTTTTCTGGTCTCCTAAGGAAGAGTTTTTAAAACTAAATCCAAGGAAGAAAAATGTAACA
1921 ACACGTGGAAGTGAACACTGGATGAATAAGCTTGTTTCCCAAATTAGAATCCTAACGTCCATATTTAGCTTCATGTATTC
2001 CCCTTTGGCTTCCACAGTTCAACTCCTTTTATTTTGAGACAGGGTCTCGCTGTGTCGCCCCAGCTGGAGTATAGTGGCAC
2081 TACCTCGGCTCACTGCAACCTCCACTCCCCGGGTTCAAGCAATTCTCAGAGTAGCTGGGATTACAGATGCCCGCCACCAC
2161 ATCTGGCTAATTTTTTTTTTTTTTTTTTAGTAGACACGGGATTTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCC
2241 TCAAGTGATCCACCCGCCTTGGCCTTCCAAAGTGTTGAGATTACAGGCGTGAGCCACGGTGCCCAGCCCATCTCTTAGTC
2321 TTCCATTCCCTTGGTGAATTTGGAAACTTGAAAAACTTGGGGACTTGACAGCAGGCTCCATGTTCTTCTGGCCTCACTGT
2401 ACTGTGTAAGGAAAGAGCTGCTTGTCAGGAACGGAAGAGGGGACGCTAGTAAAAAAAAAAAAATTGGATTCCCCAACTGG
2481 ACTAAATAGGAGTTTTTCAGGTTTGTAGTAACGTGAAACTCTCCTAGATCGAAGCAGTTAGACTGGCCTATGTGGCCTTC
2561 TCAGGGTTTGTGATTCAGTTCTTAGCGATTCTTGGCCTGATAAGTTTATGAACACAGCCCCACATTCAAGCCGTGGCCAA
2641 TCCCAGCTGTTCTCACTGCTCTTGGGAGGTGTTGTCCCAGTCAGTGTTTCTGCAGCTTCCATTTGTTGTTGTTATCCAGT
2721 GTAAGCACCTGTTGAATGCAGATGTGCTGAGTTAGAGGTGGGATTTGGAAAAGGGCTGCTATTTCTGCTGTTGAGATTTC
2801 AGAGGCTATACTCTTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTGAGACGGCATCTCACTCTTATCGCCCAGGCTGGAGT
2881 GCAATGGCGTGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGGGATTCTCCTGCCTCAGCCTCCTGAGTAGCT
2961 GGGATTACAGGCACCTACCACAATTCTCGGCTAATTTTTTTTGTATTTTTGGTAGAGACGGGGTTTCACCAGGTTGGCCA
3041 GGGTGGTCTCGAACACCTGACCTCAGATGATCCACCCACCTCGGCCTCCCAGTGTGGGTGGGATTACAGGCATGAGCCAC
3121 CGCGCCTGGCCTCAGAGGCTATACTCTTATAATTTTGTTCTGAGGGGAGACAGGGAAAGGGTTAGACAACTTGAAACATT
3201 GACCCTGTATAAAAATGCAAAATTCTCAATGTGTATTTATAAATTTCTATTTTTTATAACTTTATGGGACTTCTTAGAGG
3281 CCAAAAGTAGTAAACATGCAGATTAAAAATGTTTATGAAAATCTCAATAAAAATTCATAATAAAAACTTTGTAAATAAAT
3361 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgagGUCAGAGCUGCAAGGGCCCc 5'
              ||| :|| ||  ||||||| 
Target 5' ggcgCAGATTCCACCCTCCCGGGg 3'
 29 - 52 164.00 -27.10
2 
miRNA  3' cgAGGUCAGAGCUGCAAGGGCCCc 5'
            | ||  ||| ||  |||:||| 
Target 5' acTGCAACCTCCAC-CTCCTGGGt 3'
 2902 - 2924 141.00 -19.00
3 
miRNA  3' cgAGGUCAGAGCUGCAAGGGCCCc 5'
            ||| | ||:|:|  ||||| | 
Target 5' tcTCCTGCCTTGGC-CTCCCGAGt 3'
 318 - 340 133.00 -21.92
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8892483 34 COSMIC
COSN30126143 50 COSMIC
COSN30153996 53 COSMIC
COSN30180357 53 COSMIC
COSN26709512 75 COSMIC
COSN31533519 114 COSMIC
COSN31539321 146 COSMIC
COSN28841739 224 COSMIC
COSN23939910 526 COSMIC
COSN23934438 528 COSMIC
COSN23938044 537 COSMIC
COSN9783377 554 COSMIC
COSN9783378 589 COSMIC
COSN20102834 805 COSMIC
COSN19463549 846 COSMIC
COSN24040036 909 COSMIC
COSN28201797 1170 COSMIC
COSN26898270 1315 COSMIC
COSN23658172 1335 COSMIC
COSN28407687 1336 COSMIC
COSN26753793 1417 COSMIC
COSN1333163 1672 COSMIC
COSN31840556 2189 COSMIC
COSN15994316 2434 COSMIC
COSN20102835 2464 COSMIC
COSN20102837 2464 COSMIC
COSN18723727 2466 COSMIC
COSN22542942 2513 COSMIC
COSN7883182 2788 COSMIC
COSN32062100 2833 COSMIC
COSN28201096 2834 COSMIC
COSN26487031 3056 COSMIC
COSN15899034 3399 COSMIC
COSN16245910 3418 COSMIC
COSN29133815 3981 COSMIC
COSN28205971 4104 COSMIC
COSN19352030 4105 COSMIC
COSN2162276 4453 COSMIC
COSN24319339 4486 COSMIC
COSN28201503 4583 COSMIC
COSN7790503 5113 COSMIC
COSN5088093 5328 COSMIC
COSN20602282 5549 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1451616625 4 dbSNP
rs1489321434 9 dbSNP
rs760496842 23 dbSNP
rs1249577655 31 dbSNP
rs370707818 32 dbSNP
rs374082626 33 dbSNP
rs759402564 34 dbSNP
rs764739439 40 dbSNP
rs1164311314 41 dbSNP
rs983587192 45 dbSNP
rs1350740014 46 dbSNP
rs1459665077 47 dbSNP
rs368099182 48 dbSNP
rs530588490 49 dbSNP
rs370347836 50 dbSNP
rs1312169953 53 dbSNP
rs1236089015 54 dbSNP
rs942104765 55 dbSNP
rs1038174956 61 dbSNP
rs922070454 62 dbSNP
rs1373983394 70 dbSNP
rs1239025448 74 dbSNP
rs1278883608 79 dbSNP
rs1313210003 80 dbSNP
rs73735020 82 dbSNP
rs1285749287 85 dbSNP
rs1028603640 87 dbSNP
rs958514486 88 dbSNP
rs113275759 89 dbSNP
rs1307706569 93 dbSNP
rs1408059721 103 dbSNP
rs114104719 113 dbSNP
rs1179763156 114 dbSNP
rs966647952 115 dbSNP
rs772263430 123 dbSNP
rs767223365 126 dbSNP
rs1412008840 132 dbSNP
rs1165392332 136 dbSNP
rs1437874865 137 dbSNP
rs1442229827 145 dbSNP
rs1176910407 146 dbSNP
rs1042177847 152 dbSNP
rs546277037 164 dbSNP
rs928034197 175 dbSNP
rs959267670 196 dbSNP
rs1221579461 206 dbSNP
rs1449816327 210 dbSNP
rs200192832 211 dbSNP
rs1032497596 213 dbSNP
rs1349754908 213 dbSNP
rs73430051 214 dbSNP
rs1358310676 223 dbSNP
rs1466120179 225 dbSNP
rs1352346716 229 dbSNP
rs1333249314 230 dbSNP
rs764896274 232 dbSNP
rs1445382590 236 dbSNP
rs1012288095 240 dbSNP
rs930571424 244 dbSNP
rs1348615130 247 dbSNP
rs188083067 248 dbSNP
rs907542944 254 dbSNP
rs1388370581 258 dbSNP
rs1156500253 259 dbSNP
rs1473401751 263 dbSNP
rs1412032695 267 dbSNP
rs1198112802 269 dbSNP
rs1476772295 271 dbSNP
rs944354314 280 dbSNP
rs970942286 286 dbSNP
rs1446141080 293 dbSNP
rs1266080412 297 dbSNP
rs1040182579 323 dbSNP
rs1217080886 328 dbSNP
rs983723432 330 dbSNP
rs908148894 336 dbSNP
rs900236916 337 dbSNP
rs932860719 338 dbSNP
rs762883335 340 dbSNP
rs893944561 343 dbSNP
rs1364905999 350 dbSNP
rs1456548088 357 dbSNP
rs932092453 359 dbSNP
rs1051685991 361 dbSNP
rs549053915 362 dbSNP
rs1412207834 363 dbSNP
rs1426666359 368 dbSNP
rs1191695815 370 dbSNP
rs192543137 376 dbSNP
rs373096481 378 dbSNP
rs537625355 384 dbSNP
rs1042269999 391 dbSNP
rs902460955 393 dbSNP
rs1465202603 395 dbSNP
rs751319973 397 dbSNP
rs1001102784 402 dbSNP
rs1209689635 404 dbSNP
rs200883290 407 dbSNP
rs1021124021 408 dbSNP
rs557615872 409 dbSNP
rs1296082882 413 dbSNP
rs1003489994 416 dbSNP
rs1012014058 419 dbSNP
rs756653413 420 dbSNP
rs1301828403 423 dbSNP
rs1024624961 427 dbSNP
rs970363360 443 dbSNP
rs571053501 451 dbSNP
rs1004580470 456 dbSNP
rs1388196319 457 dbSNP
rs1421402078 459 dbSNP
rs1449777426 462 dbSNP
rs1035137355 463 dbSNP
rs1181483594 467 dbSNP
rs1409229492 476 dbSNP
rs1323676135 478 dbSNP
rs1015177494 480 dbSNP
rs959701073 481 dbSNP
rs1433915354 482 dbSNP
rs1292552274 485 dbSNP
rs1482781362 487 dbSNP
rs1273034297 494 dbSNP
rs1231258650 495 dbSNP
rs1343309030 496 dbSNP
rs1312527599 497 dbSNP
rs1226230624 499 dbSNP
rs540165403 503 dbSNP
rs553398182 504 dbSNP
rs573142256 507 dbSNP
rs951822714 511 dbSNP
rs1368170313 526 dbSNP
rs1309772052 528 dbSNP
rs541840833 529 dbSNP
rs1280428041 531 dbSNP
rs953563180 534 dbSNP
rs987496553 535 dbSNP
rs1367653064 537 dbSNP
rs558282729 543 dbSNP
rs907786496 544 dbSNP
rs113053216 552 dbSNP
rs1472265628 572 dbSNP
rs946041606 573 dbSNP
rs1453367954 576 dbSNP
rs1483693904 590 dbSNP
rs1265406166 592 dbSNP
rs1219725361 593 dbSNP
rs555405142 594 dbSNP
rs1488704957 595 dbSNP
rs921591661 597 dbSNP
rs931736418 598 dbSNP
rs1348073294 599 dbSNP
rs376148462 601 dbSNP
rs1410324949 604 dbSNP
rs543983075 609 dbSNP
rs936611197 624 dbSNP
rs893968274 625 dbSNP
rs866276748 626 dbSNP
rs894999637 633 dbSNP
rs1350254898 634 dbSNP
rs1415385333 636 dbSNP
rs202089305 638 dbSNP
rs946882904 638 dbSNP
rs1042650968 639 dbSNP
rs902757581 640 dbSNP
rs752423432 650 dbSNP
rs1360783481 652 dbSNP
rs1046166835 653 dbSNP
rs1267208324 657 dbSNP
rs1189988672 663 dbSNP
rs1489669915 672 dbSNP
rs1274262218 678 dbSNP
rs906315951 681 dbSNP
rs539167718 689 dbSNP
rs895115746 695 dbSNP
rs533068608 698 dbSNP
rs540481483 704 dbSNP
rs560191733 709 dbSNP
rs995117664 710 dbSNP
rs1368019927 712 dbSNP
rs1319694541 718 dbSNP
rs1432676810 738 dbSNP
rs1386670542 747 dbSNP
rs1029681866 753 dbSNP
rs983271313 755 dbSNP
rs1014873200 757 dbSNP
rs80135275 760 dbSNP
rs1174561916 768 dbSNP
rs756674644 774 dbSNP
rs1253986365 783 dbSNP
rs780579028 786 dbSNP
rs1188283001 787 dbSNP
rs72855258 793 dbSNP
rs1205356044 794 dbSNP
rs3800288 797 dbSNP
rs1491332029 802 dbSNP
rs1235292387 803 dbSNP
rs146859462 803 dbSNP
rs200606755 803 dbSNP
rs374642033 803 dbSNP
rs1354723609 805 dbSNP
rs977360730 808 dbSNP
rs866522355 815 dbSNP
rs914314761 816 dbSNP
rs1383049174 821 dbSNP
rs925990484 827 dbSNP
rs946913778 834 dbSNP
rs1283686654 835 dbSNP
rs1467674776 838 dbSNP
rs1446186563 851 dbSNP
rs1396159213 854 dbSNP
rs1168521411 864 dbSNP
rs1447971228 865 dbSNP
rs573026836 868 dbSNP
rs1042513921 875 dbSNP
rs1193435068 877 dbSNP
rs924087531 881 dbSNP
rs939617001 885 dbSNP
rs1253420961 889 dbSNP
rs779104374 896 dbSNP
rs1485723172 903 dbSNP
rs1273743782 906 dbSNP
rs916514033 914 dbSNP
rs1344024865 917 dbSNP
rs531479788 923 dbSNP
rs550883592 928 dbSNP
rs570983034 929 dbSNP
rs1012243266 937 dbSNP
rs1397798665 938 dbSNP
rs1380334040 942 dbSNP
rs1049640920 954 dbSNP
rs940433874 963 dbSNP
rs539646547 964 dbSNP
rs748374803 966 dbSNP
rs78487662 968 dbSNP
rs773366128 969 dbSNP
rs1366295593 978 dbSNP
rs1014780512 979 dbSNP
rs1475248349 980 dbSNP
rs1335203146 990 dbSNP
rs994938577 991 dbSNP
rs1342785245 994 dbSNP
rs1202912522 1000 dbSNP
rs965834279 1002 dbSNP
rs1273669482 1004 dbSNP
rs1029236599 1006 dbSNP
rs997845009 1007 dbSNP
rs1354010663 1017 dbSNP
rs1451041561 1018 dbSNP
rs889403375 1046 dbSNP
rs1235441195 1049 dbSNP
rs558758127 1054 dbSNP
rs953197105 1058 dbSNP
rs566836008 1062 dbSNP
rs745755586 1063 dbSNP
rs140246109 1075 dbSNP
rs114533433 1078 dbSNP
rs544002116 1081 dbSNP
rs762832429 1082 dbSNP
rs1179337933 1083 dbSNP
rs1473300419 1084 dbSNP
rs1233329047 1085 dbSNP
rs575334191 1086 dbSNP
rs80126305 1087 dbSNP
rs916499945 1089 dbSNP
rs1057154547 1093 dbSNP
rs916828590 1095 dbSNP
rs948073438 1096 dbSNP
rs1049110622 1101 dbSNP
rs1352945453 1103 dbSNP
rs1280648143 1105 dbSNP
rs887749658 1111 dbSNP
rs927799102 1112 dbSNP
rs1004979737 1123 dbSNP
rs1440994475 1125 dbSNP
rs940528730 1130 dbSNP
rs1156522709 1134 dbSNP
rs1176454518 1137 dbSNP
rs768744444 1141 dbSNP
rs1362875292 1143 dbSNP
rs1036098857 1147 dbSNP
rs1171912515 1150 dbSNP
rs557980529 1151 dbSNP
rs920370468 1155 dbSNP
rs930321524 1163 dbSNP
rs1036407302 1165 dbSNP
rs1193982182 1167 dbSNP
rs1050516079 1170 dbSNP
rs901716075 1175 dbSNP
rs889331526 1177 dbSNP
rs997350729 1178 dbSNP
rs1029353026 1179 dbSNP
rs1173558183 1180 dbSNP
rs1219125089 1183 dbSNP
rs1343442832 1185 dbSNP
rs1404735454 1187 dbSNP
rs577721493 1193 dbSNP
rs1306301559 1194 dbSNP
rs1235408710 1200 dbSNP
rs1364928890 1203 dbSNP
rs540077291 1219 dbSNP
rs1011882150 1220 dbSNP
rs1432531232 1225 dbSNP
rs1021258123 1227 dbSNP
rs1345244039 1228 dbSNP
rs1332971955 1230 dbSNP
rs1412287936 1232 dbSNP
rs188452704 1233 dbSNP
rs556781697 1234 dbSNP
rs529231563 1236 dbSNP
rs961193029 1239 dbSNP
rs111574105 1243 dbSNP
rs1033090683 1245 dbSNP
rs957726355 1248 dbSNP
rs1012881557 1249 dbSNP
rs774084475 1254 dbSNP
rs1440786246 1265 dbSNP
rs1283006523 1268 dbSNP
rs1212307832 1274 dbSNP
rs1234186612 1275 dbSNP
rs11757642 1276 dbSNP
rs1215925927 1293 dbSNP
rs1362168468 1296 dbSNP
rs117876111 1301 dbSNP
rs373879374 1302 dbSNP
rs1321111340 1304 dbSNP
rs1222900287 1305 dbSNP
rs1429089175 1308 dbSNP
rs909214318 1313 dbSNP
rs142065218 1316 dbSNP
rs1036482778 1318 dbSNP
rs1458990644 1324 dbSNP
rs1172216832 1325 dbSNP
rs927895349 1326 dbSNP
rs1420423468 1329 dbSNP
rs564848334 1333 dbSNP
rs533531920 1335 dbSNP
rs972344825 1339 dbSNP
rs369994488 1340 dbSNP
rs920316097 1342 dbSNP
rs151155927 1343 dbSNP
rs1200518196 1351 dbSNP
rs1308456728 1355 dbSNP
rs1050289573 1358 dbSNP
rs1288698935 1369 dbSNP
rs62415897 1375 dbSNP
rs1293420787 1376 dbSNP
rs1408723518 1378 dbSNP
rs1348502684 1394 dbSNP
rs575827064 1395 dbSNP
rs1021495649 1397 dbSNP
rs1462245191 1402 dbSNP
rs386700596 1404 dbSNP
rs116089456 1405 dbSNP
rs115716145 1406 dbSNP
rs1035430021 1407 dbSNP
rs755268920 1423 dbSNP
rs1040593512 1433 dbSNP
rs62415898 1434 dbSNP
rs145030082 1435 dbSNP
rs1055036609 1436 dbSNP
rs1179464451 1437 dbSNP
rs1387612201 1441 dbSNP
rs1481158759 1442 dbSNP
rs1246542906 1452 dbSNP
rs1218892790 1455 dbSNP
rs558204551 1465 dbSNP
rs1273452012 1468 dbSNP
rs1343470074 1470 dbSNP
rs1222684878 1471 dbSNP
rs1013435760 1472 dbSNP
rs1391951641 1485 dbSNP
rs1366614391 1492 dbSNP
rs1291611099 1493 dbSNP
rs1442871946 1495 dbSNP
rs1396896660 1502 dbSNP
rs985078783 1507 dbSNP
rs201444445 1509 dbSNP
rs1362195381 1510 dbSNP
rs1319951956 1513 dbSNP
rs193036054 1526 dbSNP
rs1225085393 1527 dbSNP
rs972040873 1529 dbSNP
rs923238748 1532 dbSNP
rs1470118239 1533 dbSNP
rs533967710 1538 dbSNP
rs112337269 1539 dbSNP
rs933431699 1542 dbSNP
rs1484598546 1546 dbSNP
rs1262026008 1551 dbSNP
rs1239640063 1565 dbSNP
rs184911490 1566 dbSNP
rs1490068576 1567 dbSNP
rs1236144114 1569 dbSNP
rs888956464 1570 dbSNP
rs1371461809 1577 dbSNP
rs1199156142 1585 dbSNP
rs1326819195 1585 dbSNP
rs1434711513 1585 dbSNP
rs1002908526 1593 dbSNP
rs771108534 1595 dbSNP
rs1172321378 1596 dbSNP
rs947216519 1596 dbSNP
rs1455852687 1608 dbSNP
rs1396128305 1611 dbSNP
rs962270302 1614 dbSNP
rs1264301090 1615 dbSNP
rs1263445659 1620 dbSNP
rs573972946 1638 dbSNP
rs542902525 1643 dbSNP
rs562772367 1647 dbSNP
rs576077048 1649 dbSNP
rs1056813731 1652 dbSNP
rs1348300588 1653 dbSNP
rs1372643151 1656 dbSNP
rs895437018 1661 dbSNP
rs188460337 1666 dbSNP
rs1363947855 1668 dbSNP
rs1404522646 1675 dbSNP
rs986267169 1682 dbSNP
rs1342113248 1684 dbSNP
rs910333695 1690 dbSNP
rs759071171 1691 dbSNP
rs1437175007 1692 dbSNP
rs1380495273 1694 dbSNP
rs181013813 1696 dbSNP
rs924827262 1697 dbSNP
rs969616815 1700 dbSNP
rs1006381162 1701 dbSNP
rs1421121611 1724 dbSNP
rs1054602290 1733 dbSNP
rs1016549129 1734 dbSNP
rs149388480 1735 dbSNP
rs1273861406 1739 dbSNP
rs972278307 1749 dbSNP
rs747093439 1750 dbSNP
rs1253290863 1770 dbSNP
rs907323478 1774 dbSNP
rs1002833360 1781 dbSNP
rs1291556248 1788 dbSNP
rs954832161 1790 dbSNP
rs1015609181 1793 dbSNP
rs1356607357 1794 dbSNP
rs986268292 1798 dbSNP
rs1399162026 1799 dbSNP
rs1185345721 1800 dbSNP
rs910616067 1801 dbSNP
rs796706022 1807 dbSNP
rs1166411342 1810 dbSNP
rs1475259022 1816 dbSNP
rs1250898643 1852 dbSNP
rs1027598335 1854 dbSNP
rs1261657052 1855 dbSNP
rs1439329712 1857 dbSNP
rs951961040 1860 dbSNP
rs1251038768 1861 dbSNP
rs1196570881 1869 dbSNP
rs985963687 1872 dbSNP
rs1189743920 1879 dbSNP
rs547172400 1889 dbSNP
rs183591004 1890 dbSNP
rs1042891513 1898 dbSNP
rs1383405769 1917 dbSNP
rs1017305494 1925 dbSNP
rs143653418 1926 dbSNP
rs1335548405 1931 dbSNP
rs934587520 1935 dbSNP
rs549220027 1938 dbSNP
rs1440720118 1949 dbSNP
rs975687152 1951 dbSNP
rs1329919610 1963 dbSNP
rs895522876 1967 dbSNP
rs569232508 1977 dbSNP
rs1044181422 1978 dbSNP
rs374195867 1987 dbSNP
rs1410661199 1994 dbSNP
rs990793666 1995 dbSNP
rs1005282337 2003 dbSNP
rs1016452396 2022 dbSNP
rs538204636 2024 dbSNP
rs145911544 2027 dbSNP
rs914862577 2031 dbSNP
rs368076545 2040 dbSNP
rs771197006 2043 dbSNP
rs1402832072 2044 dbSNP
rs571710016 2050 dbSNP
rs993751400 2053 dbSNP
rs749247171 2057 dbSNP
rs187992696 2058 dbSNP
rs1353411493 2070 dbSNP
rs1280662560 2078 dbSNP
rs768519251 2079 dbSNP
rs1369335088 2081 dbSNP
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rs1223452076 5108 dbSNP
rs1049052306 5113 dbSNP
rs887248991 5114 dbSNP
rs1225542598 5116 dbSNP
rs1320795852 5122 dbSNP
rs566577910 5125 dbSNP
rs1004912174 5127 dbSNP
rs191714546 5138 dbSNP
rs1274839586 5142 dbSNP
rs1439150606 5146 dbSNP
rs535622400 5148 dbSNP
rs375827857 5152 dbSNP
rs1418666706 5156 dbSNP
rs1343087131 5161 dbSNP
rs1160570743 5162 dbSNP
rs1028259397 5163 dbSNP
rs1250033446 5164 dbSNP
rs1419224939 5170 dbSNP
rs546230531 5172 dbSNP
rs559441171 5181 dbSNP
rs1007957405 5191 dbSNP
rs1269268487 5196 dbSNP
rs1464619806 5199 dbSNP
rs1215641574 5204 dbSNP
rs1485625641 5215 dbSNP
rs1021211814 5217 dbSNP
rs966565445 5222 dbSNP
rs1021149463 5225 dbSNP
rs982469850 5234 dbSNP
rs1317649390 5241 dbSNP
rs1278503897 5246 dbSNP
rs1222184319 5255 dbSNP
rs1347962505 5255 dbSNP
rs1000573002 5260 dbSNP
rs1411818481 5262 dbSNP
rs1399787430 5267 dbSNP
rs1359426970 5270 dbSNP
rs1032555829 5276 dbSNP
rs927887907 5277 dbSNP
rs1453812660 5280 dbSNP
rs1306010774 5285 dbSNP
rs959617539 5288 dbSNP
rs959048751 5289 dbSNP
rs549020850 5292 dbSNP
rs1173664483 5298 dbSNP
rs528237344 5303 dbSNP
rs920228402 5309 dbSNP
rs541655978 5310 dbSNP
rs749559281 5318 dbSNP
rs1047434532 5323 dbSNP
rs1259890285 5327 dbSNP
rs908738959 5329 dbSNP
rs1188550608 5333 dbSNP
rs6919451 5338 dbSNP
rs1329221537 5342 dbSNP
rs1242563143 5346 dbSNP
rs1201868074 5347 dbSNP
rs983543745 5349 dbSNP
rs1231926192 5352 dbSNP
rs183816098 5353 dbSNP
rs550295749 5359 dbSNP
rs901452399 5366 dbSNP
rs1298226203 5368 dbSNP
rs1382389305 5369 dbSNP
rs1341090992 5370 dbSNP
rs570385186 5374 dbSNP
rs1406712803 5380 dbSNP
rs1169941930 5382 dbSNP
rs997028242 5385 dbSNP
rs865974461 5387 dbSNP
rs1460252684 5388 dbSNP
rs1374547569 5395 dbSNP
rs532795497 5396 dbSNP
rs1429280800 5405 dbSNP
rs1242767138 5408 dbSNP
rs1181824850 5417 dbSNP
rs1462759651 5419 dbSNP
rs143771071 5423 dbSNP
rs1482925967 5428 dbSNP
rs779470920 5439 dbSNP
rs973380656 5440 dbSNP
rs1195689080 5441 dbSNP
rs1479956716 5446 dbSNP
rs919811327 5447 dbSNP
rs1228616287 5451 dbSNP
rs1358275569 5471 dbSNP
rs1312533833 5473 dbSNP
rs1247503346 5474 dbSNP
rs893771421 5476 dbSNP
rs932586145 5481 dbSNP
rs1011448992 5491 dbSNP
rs890947076 5493 dbSNP
rs1223607408 5503 dbSNP
rs1384832457 5519 dbSNP
rs750738944 5519 dbSNP
rs776672058 5519 dbSNP
rs1042134889 5524 dbSNP
rs1446704288 5526 dbSNP
rs1385887528 5535 dbSNP
rs1181193694 5537 dbSNP
rs9381135 5541 dbSNP
rs1198278003 5548 dbSNP
rs557289213 5565 dbSNP
rs577210846 5586 dbSNP
rs1490302053 5588 dbSNP
rs1476538284 5590 dbSNP
rs146480564 5591 dbSNP
rs1359744314 5592 dbSNP
rs1278389999 5601 dbSNP
rs776077231 5603 dbSNP
rs1012487174 5613 dbSNP
rs1034826027 5615 dbSNP
rs879004685 5616 dbSNP
rs1404087932 5634 dbSNP
rs535217347 5644 dbSNP
rs555230511 5658 dbSNP
rs752631158 5659 dbSNP
rs1426721238 5661 dbSNP
rs920260624 5681 dbSNP
rs1388516856 5686 dbSNP
rs1386118607 5687 dbSNP
rs1318449018 5689 dbSNP
rs1327675719 5690 dbSNP
rs1225797075 5692 dbSNP
rs1296432062 5698 dbSNP
rs951738805 5703 dbSNP
rs746455843 5706 dbSNP
rs1366432424 5713 dbSNP
rs1014972083 5714 dbSNP
rs6904481 5715 dbSNP
rs973349709 5716 dbSNP
rs1183212721 5717 dbSNP
rs907599450 5718 dbSNP
rs953406339 5725 dbSNP
rs944431226 5726 dbSNP
rs1202064605 5727 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgAGGUCAGAGCUGCAAGGGCccc 5'
            | ||  :|| :|  |||||   
Target 5' acUGCAACUUCUGC-CUCCCG--- 3'
 		21 - 40
2 
miRNA  3' cgagGUCAGAGCUGCAAGGGcccc 5'
              || |  :| |  ||::    
Target 5' ----CAAUGGUG-CAAUCUUggcc 3'
 		1 - 19
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760631. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_B PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000372977.3 | 3UTR | CAAUGGUGCAAUCUUGGCCCACUGCAACUUCUGCCUCCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
228 hsa-miR-1247-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT107246 PTGES2 prostaglandin E synthase 2 2 2
MIRT118004 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 6
MIRT345983 BIRC5 baculoviral IAP repeat containing 5 2 4
MIRT369967 ZNF264 zinc finger protein 264 2 2
MIRT451350 ZNF573 zinc finger protein 573 2 4
MIRT451367 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT451450 ZNF556 zinc finger protein 556 2 4
MIRT451766 ZNF611 zinc finger protein 611 2 6
MIRT452065 ZNF585B zinc finger protein 585B 2 8
MIRT452346 TG thyroglobulin 2 2
MIRT452519 TFDP2 transcription factor Dp-2 2 6
MIRT452631 FAM162A family with sequence similarity 162 member A 2 2
MIRT452896 PSD4 pleckstrin and Sec7 domain containing 4 2 4
MIRT453263 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453567 RDH13 retinol dehydrogenase 13 2 2
MIRT453911 GABRR2 gamma-aminobutyric acid type A receptor rho2 subunit 2 4
MIRT454576 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT454859 ACOT9 acyl-CoA thioesterase 9 2 4
MIRT455094 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 2 2
MIRT455790 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT455932 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT456213 LIX1L limb and CNS expressed 1 like 2 4
MIRT456238 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 6
MIRT456279 HRNR hornerin 2 2
MIRT456665 TIFA TRAF interacting protein with forkhead associated domain 2 2
MIRT457088 XPNPEP3 X-prolyl aminopeptidase 3 2 2
MIRT457322 DUSP19 dual specificity phosphatase 19 2 2
MIRT457695 ZNF587 zinc finger protein 587 2 4
MIRT458160 LYRM4 LYR motif containing 4 2 6
MIRT458465 SNX22 sorting nexin 22 2 8
MIRT458504 MARVELD2 MARVEL domain containing 2 2 2
MIRT458514 GSG2 histone H3 associated protein kinase 2 10
MIRT458645 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT458823 ZNF843 zinc finger protein 843 2 4
MIRT459156 NARF nuclear prelamin A recognition factor 2 2
MIRT459182 HSPA6 heat shock protein family A (Hsp70) member 6 2 4
MIRT459374 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459552 BTD biotinidase 2 2
MIRT459756 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT459860 SVOP SV2 related protein 2 8
MIRT460020 DTX3L deltex E3 ubiquitin ligase 3L 2 6
MIRT460233 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT460275 SLC26A2 solute carrier family 26 member 2 2 2
MIRT460461 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460540 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT460551 IFNAR1 interferon alpha and beta receptor subunit 1 2 6
MIRT460978 STK17B serine/threonine kinase 17b 2 2
MIRT461421 CTSL2 cathepsin V 1 2
MIRT461960 C3 complement C3 2 4
MIRT462529 DHODH dihydroorotate dehydrogenase (quinone) 2 6
MIRT462864 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT462917 ZNRF3 zinc and ring finger 3 2 2
MIRT463022 ZNF70 zinc finger protein 70 2 2
MIRT463074 ZNF639 zinc finger protein 639 2 2
MIRT463130 ZNF451 zinc finger protein 451 2 4
MIRT463627 YY1 YY1 transcription factor 2 2
MIRT467015 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467127 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468526 SERTAD2 SERTA domain containing 2 2 4
MIRT468584 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT469540 RBBP8 RB binding protein 8, endonuclease 2 2
MIRT469876 PURB purine rich element binding protein B 2 4
MIRT471577 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472110 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472127 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT472423 NCKAP1 NCK associated protein 1 2 2
MIRT472829 MTMR10 myotubularin related protein 10 2 4
MIRT473022 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473408 MDM4 MDM4, p53 regulator 2 2
MIRT474122 LIPC lipase C, hepatic type 2 2
MIRT474927 KCTD20 potassium channel tetramerization domain containing 20 2 2
MIRT476807 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT478006 DNAL1 dynein axonemal light chain 1 2 2
MIRT479200 CLCN5 chloride voltage-gated channel 5 2 6
MIRT479671 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT479917 CCDC117 coiled-coil domain containing 117 2 6
MIRT479977 CARD10 caspase recruitment domain family member 10 2 2
MIRT480731 BPTF bromodomain PHD finger transcription factor 2 6
MIRT481100 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 2 2
MIRT481160 AVL9 AVL9 cell migration associated 2 6
MIRT481393 ATG12 autophagy related 12 2 2
MIRT481433 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT482083 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT484667 HOXD3 homeobox D3 2 4
MIRT485940 ECSIT ECSIT signalling integrator 2 4
MIRT485950 BRSK1 BR serine/threonine kinase 1 2 2
MIRT487600 NKD2 naked cuticle homolog 2 2 4
MIRT487666 HPCAL1 hippocalcin like 1 2 4
MIRT489966 GNB2 G protein subunit beta 2 2 2
MIRT490332 ANK1 ankyrin 1 2 4
MIRT491314 LRFN1 leucine rich repeat and fibronectin type III domain containing 1 2 2
MIRT493193 MINK1 misshapen like kinase 1 2 4
MIRT493300 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493816 FSCN1 fascin actin-bundling protein 1 2 2
MIRT496977 RPS6KA2 ribosomal protein S6 kinase A2 2 2
MIRT512229 ATXN3 ataxin 3 2 6
MIRT515141 ZNF799 zinc finger protein 799 2 4
MIRT516647 SMC5 structural maintenance of chromosomes 5 2 2
MIRT517952 TRIM59 tripartite motif containing 59 2 2
MIRT520971 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521569 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT522918 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT532713 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT540809 SLC35F5 solute carrier family 35 member F5 2 2
MIRT550734 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551293 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 4
MIRT559740 ACOX1 acyl-CoA oxidase 1 2 2
MIRT564410 EMILIN2 elastin microfibril interfacer 2 2 2
MIRT565240 TRAF6 TNF receptor associated factor 6 2 2
MIRT568911 ATP6V1B1 ATPase H+ transporting V1 subunit B1 2 2
MIRT575232 Fut1 fucosyltransferase 1 2 2
MIRT576224 Srsf1 serine/arginine-rich splicing factor 1 2 2
MIRT607724 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT608090 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT613920 POU3F1 POU class 3 homeobox 1 2 2
MIRT618520 SELPLG selectin P ligand 2 2
MIRT624703 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT624770 AKR1D1 aldo-keto reductase family 1 member D1 2 2
MIRT625720 SPI1 Spi-1 proto-oncogene 2 2
MIRT629975 MRPL36 mitochondrial ribosomal protein L36 2 2
MIRT631356 ZFP82 ZFP82 zinc finger protein 2 2
MIRT631426 CDNF cerebral dopamine neurotrophic factor 2 2
MIRT631665 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT631735 SF3B1 splicing factor 3b subunit 1 2 2
MIRT632334 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT632419 SLC30A5 solute carrier family 30 member 5 2 2
MIRT632531 PSMB2 proteasome subunit beta 2 2 2
MIRT633264 LDLR low density lipoprotein receptor 2 2
MIRT634327 SLC43A2 solute carrier family 43 member 2 2 2
MIRT634753 CRCP CGRP receptor component 2 2
MIRT635412 KIAA1614 KIAA1614 2 2
MIRT636281 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT636291 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT640265 FANCA Fanconi anemia complementation group A 2 2
MIRT641738 TXNL1 thioredoxin like 1 2 2
MIRT643276 ZNF566 zinc finger protein 566 2 2
MIRT643528 ERAP2 endoplasmic reticulum aminopeptidase 2 2 2
MIRT643555 C11orf70 chromosome 11 open reading frame 70 2 2
MIRT647027 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT647298 RBM43 RNA binding motif protein 43 2 2
MIRT648124 SEMA3E semaphorin 3E 2 4
MIRT648611 TPCN2 two pore segment channel 2 2 2
MIRT648717 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT649425 CDC14B cell division cycle 14B 2 2
MIRT650029 DSG3 desmoglein 3 2 2
MIRT650281 TAS2R5 taste 2 receptor member 5 2 2
MIRT650529 CCDC77 coiled-coil domain containing 77 2 2
MIRT654240 RNF115 ring finger protein 115 2 2
MIRT657032 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT658408 FAM212B family with sequence similarity 212 member B 2 2
MIRT659442 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT661080 FFAR2 free fatty acid receptor 2 2 2
MIRT661529 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT661876 PDLIM5 PDZ and LIM domain 5 2 2
MIRT662100 ZNF419 zinc finger protein 419 2 2
MIRT662136 ZC3H8 zinc finger CCCH-type containing 8 2 2
MIRT663638 HM13 histocompatibility minor 13 2 2
MIRT663703 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663847 TRIM72 tripartite motif containing 72 2 2
MIRT664769 MESDC2 mesoderm development LRP chaperone 2 2
MIRT665481 VSTM4 V-set and transmembrane domain containing 4 2 2
MIRT666533 RNF157 ring finger protein 157 2 2
MIRT668107 GK5 glycerol kinase 5 (putative) 2 2
MIRT668984 CKAP4 cytoskeleton associated protein 4 2 4
MIRT669742 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT671010 MOB4 MOB family member 4, phocein 2 2
MIRT671583 SPIRE2 spire type actin nucleation factor 2 2 2
MIRT673261 INO80 INO80 complex subunit 2 2
MIRT673533 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT674714 FAM73A mitoguardin 1 2 2
MIRT675205 ZNF554 zinc finger protein 554 2 2
MIRT676488 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT676705 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT676851 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT676855 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT676915 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT677000 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT677188 PDE12 phosphodiesterase 12 2 2
MIRT677473 SLC7A11 solute carrier family 7 member 11 2 2
MIRT677562 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677779 FKTN fukutin 2 2
MIRT677896 DCP1A decapping mRNA 1A 2 2
MIRT677996 GATC glutamyl-tRNA amidotransferase subunit C 2 2
MIRT678239 HMGB1 high mobility group box 1 2 4
MIRT678313 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT678437 PDE4C phosphodiesterase 4C 2 2
MIRT678480 RNF222 ring finger protein 222 2 2
MIRT678591 ZNF91 zinc finger protein 91 2 2
MIRT678863 SLC7A14 solute carrier family 7 member 14 2 2
MIRT679241 LRP10 LDL receptor related protein 10 2 2
MIRT679388 WDR92 WD repeat domain 92 2 2
MIRT679501 ZNF106 zinc finger protein 106 2 2
MIRT679581 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT679827 TMEM106B transmembrane protein 106B 2 2
MIRT679842 GPR75 G protein-coupled receptor 75 2 2
MIRT679860 ZFP30 ZFP30 zinc finger protein 2 2
MIRT680733 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT680922 STX2 syntaxin 2 2 2
MIRT680953 CEP104 centrosomal protein 104 2 2
MIRT681053 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681967 TFCP2 transcription factor CP2 2 2
MIRT682010 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT682061 B4GALT7 beta-1,4-galactosyltransferase 7 2 4
MIRT682070 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT683356 SCARF1 scavenger receptor class F member 1 2 2
MIRT683699 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT684268 PRPF4 pre-mRNA processing factor 4 2 2
MIRT685500 MED16 mediator complex subunit 16 2 2
MIRT686876 SLC25A32 solute carrier family 25 member 32 2 2
MIRT690869 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691139 HJURP Holliday junction recognition protein 2 2
MIRT691195 NIF3L1 NGG1 interacting factor 3 like 1 2 2
MIRT691780 SLC24A4 solute carrier family 24 member 4 2 2
MIRT692901 MPL MPL proto-oncogene, thrombopoietin receptor 2 2
MIRT694551 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT695421 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695956 FANCM Fanconi anemia complementation group M 2 2
MIRT696615 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT700682 PPAP2B phospholipid phosphatase 3 2 2
MIRT701215 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT702196 LRRC58 leucine rich repeat containing 58 2 2
MIRT702837 HOOK3 hook microtubule tethering protein 3 2 2
MIRT703652 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT705679 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706650 SMIM19 small integral membrane protein 19 2 2
MIRT711087 NEUROD2 neuronal differentiation 2 2 2
MIRT724961 PTK6 protein tyrosine kinase 6 2 2
MIRT735597 BCL6 B-cell CLL/lymphoma 6 1 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1247 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-1247 Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780CIS)
hsa-mir-1247 Sorafenib 216239 NSC747971 approved sensitive High Hepatocellular Carcinoma tissue
hsa-mir-1247 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-mir-1247 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-1247 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-1247 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-1247 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-1247 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-1247 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1247-3p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (PC-9)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer cell line (PC-9)
hsa-miR-1247-3p Yuanhuadine 6440572 resistant High Non-Small Cell Lung Cancer cell line (PC-9)
hsa-miR-1247-3p Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-1247-3p Oxaliplatin 6857599 NSC266046 approved sensitive Low Colorectal Cancer cell line (HCT-116)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-1247-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-1247-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1247-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-1247-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-1247-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-1247-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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