miRTarBase - #MIRT455829


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pre-miRNA Information
pre-miRNA hsa-mir-3529   
Genomic Coordinates chr15: 88611847 - 88611924
Description Homo sapiens miR-3529 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3529-3p
Sequence 46| AACAACAAAAUCACUAGUCUUCCA |69
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1196555927 1 dbSNP
rs1215541761 2 dbSNP
rs761252497 3 dbSNP
rs1263337637 4 dbSNP
rs868026301 6 dbSNP
rs762762175 9 dbSNP
rs751269230 14 dbSNP
rs1257397051 16 dbSNP
Putative Targets

Gene Information
Gene Symbol ZSWIM1   
Synonyms C20orf162
Description zinc finger SWIM-type containing 1
Transcript NM_080603   
Expression
Putative miRNA Targets on ZSWIM1
3'UTR of ZSWIM1
(miRNA target sites are highlighted)		 
>ZSWIM1|NM_080603|3'UTR
   1 TTATTCTCGATGCCCAGAGATGCTCATGCACCTGTGCACACTCACATCCACCCATACACACACACACACACACACACACA
  81 CACACACACACACTCCCTTACACTGTTGTACTTCCGTGGGCCCTCCTTCCAGAACAAGGACAACAAGGACAAGGTTGAAG
 161 GGTCTTCTCATCTACCATGGCCTGCTACCTAGCATGTGTCTAGCTCAATGAGACAGGAGTCAGCAAATCTTAATCTGTTT
 241 AGTTTACTCAGGTGGCCACATACAGTCTCTGTTGTATATTCTTGGTTTTGTTTTAATATTTTTTTTCTTTTTTTTTTTTT
 321 TTTTTTTTTTGAGAAGGAGTCTGTCTCCGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCTGCTCACTGCAAGCTCCAC
 401 CTCCTGGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTATCTGGGACTACAGGCGCCCGCCACAATGCCGGGCTAAT
 481 TTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACTTCGTGATCTGCCCGC
 561 CTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATCGCACCCGGCCTGTTTTAACATTTTCATAAGGTAAAAACC
 641 TTTCTTAGCTCAAAGGTCTTTAAAAAAGCAGGCAATCCAGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCATTTTGG
 721 GAGGCTGAGGTGGACAGATGACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAACCCTGTCTCTACTAA
 801 AAATACACAAATTAGCCAGGTGTGGTGGCGGGGGCCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTT
 881 GAACCTGGGAGGCAGAGGTTGCAGTAGGCCAAGATCCTGCTGCCACTGCACTCCAGCCTGGGAGGGTGAGACTCCATCTA
 961 AAAAAAATAAAATAAATGGCAACCCCTGGTCTAAGATAAGAGATAAAACATCAGGTGGTGAGGTTGAGGTTTGGGGCTTG
1041 GTAGCAGTTGCCCCAGTCATGAGATGACTCACTTAACCCGTCTCCTTTAAGTGAGCTGGGCTGGGAGGCTTCCTACAGGG
1121 GAAGAGGCCCCTCTGGGGAGCTGACTCAGCCAGGCTCCCTGAACTTTTTTCCTTGTCCCATCCTGGGGTCAATAAAACTG
1201 AATGTTGCATATTCTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acCUUCUGAUCACUAAAACAACAa 5'
            | | |:|  ||:||||||| | 
Target 5' ttGTATATTCTTGGTTTTGTTTTa 3'
 272 - 295 138.00 -6.70
2 
miRNA  3' accUUCUGAUCACUAAAACAACAa 5'
             | | | :|  | ||| |||| 
Target 5' acaATGCCGGGCTAATTTTTTGTa 3'
 465 - 488 121.00 -6.20
3 
miRNA  3' accuUCUGAUCACUAAAACAACAa 5'
              ||: |:||||  |||  || 
Target 5' catcAGG-TGGTGAGGTTGAGGTt 3'
 1009 - 1031 99.00 -11.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31612530 9 COSMIC
COSN31588263 14 COSMIC
COSN31501160 17 COSMIC
COSN30506601 33 COSMIC
COSN27006755 45 COSMIC
COSN26571331 53 COSMIC
COSN27006756 54 COSMIC
COSN32052713 56 COSMIC
COSN15627196 62 COSMIC
COSN15663159 93 COSMIC
COSN2534019 93 COSMIC
COSN20116495 94 COSMIC
COSN31562619 95 COSMIC
COSN15665828 97 COSMIC
COSN15627197 106 COSMIC
COSN20116496 106 COSMIC
COSN30540856 154 COSMIC
COSN30527412 169 COSMIC
COSN30281753 170 COSMIC
COSN30119237 196 COSMIC
COSN8611013 308 COSMIC
COSN26574277 309 COSMIC
COSN28186498 315 COSMIC
COSN8611014 315 COSMIC
COSN30137399 316 COSMIC
COSN30139777 318 COSMIC
COSN30120174 319 COSMIC
COSN30119986 320 COSMIC
COSN30125360 321 COSMIC
COSN16031490 378 COSMIC
COSN30128338 444 COSMIC
COSN30138217 474 COSMIC
COSN30112097 548 COSMIC
COSN31514973 560 COSMIC
COSN19656806 601 COSMIC
COSN26504809 605 COSMIC
COSN2488647 635 COSMIC
COSN31541852 668 COSMIC
COSN30169873 697 COSMIC
COSN30143159 725 COSMIC
COSN31596556 741 COSMIC
COSN31489170 826 COSMIC
COSN23012678 968 COSMIC
COSN26568342 969 COSMIC
COSN31519525 970 COSMIC
COSN31531194 1058 COSMIC
COSN31489835 1062 COSMIC
COSN26677764 1150 COSMIC
COSN30141035 1154 COSMIC
COSN15627198 1159 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs764274418 1 dbSNP
rs765419065 1 dbSNP
rs1450238663 2 dbSNP
rs753910299 8 dbSNP
rs757860450 9 dbSNP
rs968748195 10 dbSNP
rs1279195718 12 dbSNP
rs765809271 18 dbSNP
rs1303248094 21 dbSNP
rs1220877065 24 dbSNP
rs199847370 27 dbSNP
rs887618785 28 dbSNP
rs1006031167 33 dbSNP
rs1432828049 36 dbSNP
rs1283210311 37 dbSNP
rs758676776 40 dbSNP
rs1365288211 42 dbSNP
rs775776748 42 dbSNP
rs1386841496 44 dbSNP
rs780965079 46 dbSNP
rs747763758 48 dbSNP
rs1313619074 49 dbSNP
rs755709743 51 dbSNP
rs761574688 52 dbSNP
rs767288869 53 dbSNP
rs777289009 53 dbSNP
rs373152918 54 dbSNP
rs111450209 56 dbSNP
rs1234667515 56 dbSNP
rs1263050253 56 dbSNP
rs1332951739 56 dbSNP
rs1336597719 56 dbSNP
rs1377108673 56 dbSNP
rs1390337510 56 dbSNP
rs139406603 56 dbSNP
rs1405152804 56 dbSNP
rs1450173652 56 dbSNP
rs1468046606 56 dbSNP
rs370178658 56 dbSNP
rs71181872 56 dbSNP
rs72526867 56 dbSNP
rs878870375 56 dbSNP
rs879000809 56 dbSNP
rs879241690 56 dbSNP
rs1177040751 58 dbSNP
rs1425111940 61 dbSNP
rs1476572391 62 dbSNP
rs1362017054 71 dbSNP
rs1156944057 72 dbSNP
rs1014869717 73 dbSNP
rs1239017136 74 dbSNP
rs768494481 83 dbSNP
rs1359394014 87 dbSNP
rs1242965749 89 dbSNP
rs1201417922 90 dbSNP
rs1347694501 92 dbSNP
rs1467326642 93 dbSNP
rs959766594 93 dbSNP
rs1300860200 94 dbSNP
rs548841118 95 dbSNP
rs1400505812 97 dbSNP
rs1300001583 99 dbSNP
rs1338463191 100 dbSNP
rs377475922 101 dbSNP
rs1491042293 103 dbSNP
rs11469050 104 dbSNP
rs67902626 104 dbSNP
rs781430963 104 dbSNP
rs1381630124 106 dbSNP
rs1030447686 116 dbSNP
rs528275077 117 dbSNP
rs1280034780 119 dbSNP
rs1488844950 123 dbSNP
rs756135337 131 dbSNP
rs984409905 133 dbSNP
rs1261683020 140 dbSNP
rs924997459 142 dbSNP
rs909799494 144 dbSNP
rs1384867977 145 dbSNP
rs1188606885 152 dbSNP
rs1444491214 154 dbSNP
rs556202759 166 dbSNP
rs1205117253 169 dbSNP
rs1488318351 170 dbSNP
rs1185433395 173 dbSNP
rs1243169805 179 dbSNP
rs988243849 180 dbSNP
rs914053534 182 dbSNP
rs1358214908 209 dbSNP
rs1284430202 228 dbSNP
rs1434526914 241 dbSNP
rs1324531383 250 dbSNP
rs749440282 251 dbSNP
rs1394213416 252 dbSNP
rs1420107224 254 dbSNP
rs1300059600 260 dbSNP
rs1422833505 264 dbSNP
rs571455422 268 dbSNP
rs1358556484 277 dbSNP
rs1473970990 286 dbSNP
rs879126450 291 dbSNP
rs1371750727 292 dbSNP
rs1430017038 295 dbSNP
rs1294180771 297 dbSNP
rs1219537902 299 dbSNP
rs1265993510 299 dbSNP
rs1289536617 299 dbSNP
rs1369883059 301 dbSNP
rs1490062901 303 dbSNP
rs926619107 304 dbSNP
rs1290136542 307 dbSNP
rs1170344339 308 dbSNP
rs1226683890 308 dbSNP
rs1281298886 308 dbSNP
rs1324426491 308 dbSNP
rs1342229479 308 dbSNP
rs1394641617 308 dbSNP
rs1403173626 308 dbSNP
rs1407332619 308 dbSNP
rs1426407265 308 dbSNP
rs1466476848 308 dbSNP
rs538978364 308 dbSNP
rs750505217 308 dbSNP
rs1197960532 310 dbSNP
rs1246829010 311 dbSNP
rs1200416408 312 dbSNP
rs1385275651 312 dbSNP
rs879048921 313 dbSNP
rs901281212 313 dbSNP
rs1261163443 314 dbSNP
rs71181873 314 dbSNP
rs1133368 315 dbSNP
rs1354803935 316 dbSNP
rs1438722004 317 dbSNP
rs1242781732 318 dbSNP
rs550872283 319 dbSNP
rs1284417997 321 dbSNP
rs1331011350 322 dbSNP
rs934041968 324 dbSNP
rs1316838143 331 dbSNP
rs938116469 332 dbSNP
rs1275938096 333 dbSNP
rs1489196254 334 dbSNP
rs1133370 336 dbSNP
rs1133371 339 dbSNP
rs1191314018 344 dbSNP
rs1252010077 349 dbSNP
rs1414364895 350 dbSNP
rs1426515808 356 dbSNP
rs150692129 360 dbSNP
rs13045187 364 dbSNP
rs1160234435 367 dbSNP
rs13039642 371 dbSNP
rs1405594755 374 dbSNP
rs544237662 375 dbSNP
rs1165447913 378 dbSNP
rs1209198742 390 dbSNP
rs1312651736 395 dbSNP
rs1351649438 406 dbSNP
rs1348704808 407 dbSNP
rs1308774125 411 dbSNP
rs1456476917 415 dbSNP
rs1325404883 418 dbSNP
rs1049936274 427 dbSNP
rs1218836550 432 dbSNP
rs889919508 434 dbSNP
rs554786090 438 dbSNP
rs1449362173 444 dbSNP
rs912204219 445 dbSNP
rs1379206912 452 dbSNP
rs1158845047 454 dbSNP
rs1441113870 458 dbSNP
rs1373114348 459 dbSNP
rs1181003383 460 dbSNP
rs1229356986 462 dbSNP
rs1292675063 463 dbSNP
rs1044407739 469 dbSNP
rs1211286438 470 dbSNP
rs1272066276 473 dbSNP
rs573244162 474 dbSNP
rs1180178986 480 dbSNP
rs998504703 480 dbSNP
rs1031279189 486 dbSNP
rs1230933369 487 dbSNP
rs1469466892 489 dbSNP
rs1182326829 490 dbSNP
rs959800660 494 dbSNP
rs1013929465 495 dbSNP
rs1022760211 498 dbSNP
rs534140366 499 dbSNP
rs983963758 500 dbSNP
rs1163709840 503 dbSNP
rs1424154475 503 dbSNP
rs1401193754 504 dbSNP
rs747944988 507 dbSNP
rs771795162 514 dbSNP
rs1327146120 515 dbSNP
rs6094222 516 dbSNP
rs961300872 520 dbSNP
rs1286407055 522 dbSNP
rs1221170133 523 dbSNP
rs972750026 524 dbSNP
rs922570773 527 dbSNP
rs934073383 529 dbSNP
rs1340390286 534 dbSNP
rs1292111079 535 dbSNP
rs1318051644 539 dbSNP
rs1200096557 541 dbSNP
rs577019332 546 dbSNP
rs1436955482 548 dbSNP
rs1210564881 549 dbSNP
rs1049803687 551 dbSNP
rs1239052877 555 dbSNP
rs1474176758 556 dbSNP
rs544534973 559 dbSNP
rs1424381934 560 dbSNP
rs138690365 564 dbSNP
rs189008854 565 dbSNP
rs1043884225 579 dbSNP
rs1478828389 583 dbSNP
rs1265402200 584 dbSNP
rs192920046 592 dbSNP
rs999708185 593 dbSNP
rs1248683806 595 dbSNP
rs1197068709 597 dbSNP
rs1317757514 599 dbSNP
rs6094223 601 dbSNP
rs1374079040 602 dbSNP
rs1414675356 603 dbSNP
rs866784438 605 dbSNP
rs1386860590 606 dbSNP
rs1048524640 608 dbSNP
rs888510192 609 dbSNP
rs1400822604 610 dbSNP
rs940070287 621 dbSNP
rs1267976449 622 dbSNP
rs1377022199 623 dbSNP
rs1005822498 630 dbSNP
rs1433846974 633 dbSNP
rs1473266737 635 dbSNP
rs1427514085 648 dbSNP
rs1036227762 649 dbSNP
rs1239129109 660 dbSNP
rs1016744951 662 dbSNP
rs1482532151 662 dbSNP
rs1219504109 664 dbSNP
rs200532080 668 dbSNP
rs59782893 669 dbSNP
rs546372670 671 dbSNP
rs972614243 680 dbSNP
rs1306597607 690 dbSNP
rs1239023602 699 dbSNP
rs1210016140 700 dbSNP
rs1333062078 705 dbSNP
rs1263838536 708 dbSNP
rs922602471 727 dbSNP
rs1303423270 729 dbSNP
rs1466599056 731 dbSNP
rs955395903 732 dbSNP
rs997879474 733 dbSNP
rs1439265085 736 dbSNP
rs1381170098 741 dbSNP
rs1030207493 744 dbSNP
rs1191115520 751 dbSNP
rs1372637567 765 dbSNP
rs1478468195 769 dbSNP
rs911322363 779 dbSNP
rs73622624 780 dbSNP
rs1283209246 781 dbSNP
rs888785361 782 dbSNP
rs1353900439 787 dbSNP
rs1311003150 799 dbSNP
rs565103746 811 dbSNP
rs184637485 817 dbSNP
rs550908932 818 dbSNP
rs1044301574 821 dbSNP
rs1174576480 822 dbSNP
rs1397675914 826 dbSNP
rs1358575270 830 dbSNP
rs569143630 831 dbSNP
rs1419180332 833 dbSNP
rs1361411539 834 dbSNP
rs1393618590 835 dbSNP
rs1032068665 844 dbSNP
rs1159721189 845 dbSNP
rs1363011179 850 dbSNP
rs190306531 854 dbSNP
rs1188715495 855 dbSNP
rs1426021637 856 dbSNP
rs1261670015 861 dbSNP
rs987836181 869 dbSNP
rs1192216769 877 dbSNP
rs1021574596 879 dbSNP
rs970881115 897 dbSNP
rs896734763 899 dbSNP
rs1315595713 902 dbSNP
rs1355246339 903 dbSNP
rs1325396086 904 dbSNP
rs1265762142 909 dbSNP
rs1246737558 911 dbSNP
rs1338251477 914 dbSNP
rs548523451 916 dbSNP
rs566744706 917 dbSNP
rs6130961 918 dbSNP
rs1399468715 921 dbSNP
rs1175575591 928 dbSNP
rs982780298 930 dbSNP
rs926867207 931 dbSNP
rs1164134807 932 dbSNP
rs1463348188 935 dbSNP
rs73308375 936 dbSNP
rs1170669779 945 dbSNP
rs905628593 954 dbSNP
rs1196161418 955 dbSNP
rs1005275272 960 dbSNP
rs1450629114 960 dbSNP
rs1233304379 964 dbSNP
rs558608172 970 dbSNP
rs984146873 977 dbSNP
rs1257323619 985 dbSNP
rs373158262 993 dbSNP
rs1219211879 1003 dbSNP
rs1355753769 1013 dbSNP
rs113800831 1026 dbSNP
rs6073942 1029 dbSNP
rs1434414999 1030 dbSNP
rs1330673720 1032 dbSNP
rs1324531974 1043 dbSNP
rs940124037 1045 dbSNP
rs58267437 1048 dbSNP
rs538017128 1052 dbSNP
rs1443548058 1060 dbSNP
rs1398619738 1064 dbSNP
rs1331136521 1069 dbSNP
rs1261093561 1071 dbSNP
rs1422291640 1078 dbSNP
rs556462687 1080 dbSNP
rs897653611 1081 dbSNP
rs933132469 1092 dbSNP
rs1456256172 1096 dbSNP
rs1454056287 1100 dbSNP
rs1199057792 1104 dbSNP
rs1052127644 1106 dbSNP
rs1458989818 1108 dbSNP
rs575035229 1109 dbSNP
rs1382611225 1113 dbSNP
rs1007412664 1116 dbSNP
rs1452234043 1121 dbSNP
rs1236820608 1122 dbSNP
rs1374984132 1129 dbSNP
rs1158533624 1135 dbSNP
rs181654321 1137 dbSNP
rs1356786911 1143 dbSNP
rs1405463274 1148 dbSNP
rs776786525 1154 dbSNP
rs1332838048 1157 dbSNP
rs924106756 1157 dbSNP
rs762040919 1162 dbSNP
rs1402352349 1165 dbSNP
rs893465381 1178 dbSNP
rs1175003442 1185 dbSNP
rs1437379921 1186 dbSNP
rs1009311643 1189 dbSNP
rs1020668897 1193 dbSNP
rs1368335054 1197 dbSNP
rs1439787332 1199 dbSNP
rs1235649918 1201 dbSNP
rs1209394620 1204 dbSNP
rs971317433 1206 dbSNP
rs185789771 1210 dbSNP
rs992274261 1214 dbSNP
rs918193310 1216 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000372523.1 | 3UTR | ACACACACACACACUCCCUUACACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
101 hsa-miR-3529-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061395 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT066530 HMGA2 high mobility group AT-hook 2 2 6
MIRT072699 SMAD3 SMAD family member 3 2 2
MIRT080963 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT095081 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT104782 FZD6 frizzled class receptor 6 2 2
MIRT161286 U2SURP U2 snRNP associated SURP domain containing 2 2
MIRT176138 ATP7A ATPase copper transporting alpha 2 2
MIRT221376 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 2
MIRT260611 SOX4 SRY-box 4 2 4
MIRT269640 MDM4 MDM4, p53 regulator 2 4
MIRT306853 FYTTD1 forty-two-three domain containing 1 2 2
MIRT315027 TFAP2A transcription factor AP-2 alpha 2 2
MIRT367278 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT444211 TMPRSS4 transmembrane protease, serine 4 2 2
MIRT455829 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT466299 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT467332 SPATA13 spermatogenesis associated 13 2 4
MIRT469830 RAB14 RAB14, member RAS oncogene family 2 2
MIRT470571 POU2F1 POU class 2 homeobox 1 2 2
MIRT472094 NOLC1 nucleolar and coiled-body phosphoprotein 1 2 2
MIRT482529 ACTB actin beta 2 4
MIRT495009 KRTAP4-9 keratin associated protein 4-9 2 4
MIRT495562 ZNF169 zinc finger protein 169 2 2
MIRT496742 PBX2P1 PBX homeobox 2 pseudogene 1 2 4
MIRT500811 THBS1 thrombospondin 1 2 2
MIRT500846 SYPL1 synaptophysin like 1 2 4
MIRT504267 C1orf147 chromosome 1 open reading frame 147 2 4
MIRT504320 TUSC1 tumor suppressor candidate 1 2 6
MIRT505533 SPATA2 spermatogenesis associated 2 2 4
MIRT505799 RSBN1 round spermatid basic protein 1 2 4
MIRT518201 CLEC4E C-type lectin domain family 4 member E 2 2
MIRT520019 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 4
MIRT527321 NCAM2 neural cell adhesion molecule 2 2 2
MIRT529005 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT530312 TNFRSF10D TNF receptor superfamily member 10d 2 2
MIRT532324 DUSP4 dual specificity phosphatase 4 2 2
MIRT532497 HOXA13 homeobox A13 2 2
MIRT533203 WASF3 WAS protein family member 3 2 4
MIRT533376 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 4
MIRT534107 SOWAHC sosondowah ankyrin repeat domain family member C 2 2
MIRT537381 FGF2 fibroblast growth factor 2 2 2
MIRT537487 FAM169A family with sequence similarity 169 member A 2 2
MIRT539210 ANTXR2 anthrax toxin receptor 2 2 4
MIRT540299 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT544610 FCF1 FCF1, rRNA-processing protein 2 2
MIRT547382 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT551195 GAB2 GRB2 associated binding protein 2 2 2
MIRT554193 SLC35D1 solute carrier family 35 member D1 2 2
MIRT554998 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT557252 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT558440 DDIT4 DNA damage inducible transcript 4 2 3
MIRT558687 CMIP c-Maf inducing protein 2 2
MIRT562111 ITGB1 integrin subunit beta 1 2 2
MIRT562312 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT564781 ZDHHC7 zinc finger DHHC-type containing 7 2 2
MIRT565536 SON SON DNA binding protein 2 2
MIRT567294 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT572337 SOX5 SRY-box 5 2 2
MIRT572389 MTX3 metaxin 3 2 2
MIRT575082 Ddit4 DNA-damage-inducible transcript 4 2 3
MIRT576838 Tgfbr3 transforming growth factor, beta receptor III 2 2
MIRT607441 SEMA6D semaphorin 6D 2 4
MIRT609555 TCEAL4 transcription elongation factor A like 4 2 2
MIRT612890 HOOK3 hook microtubule tethering protein 3 2 2
MIRT613611 TP53 tumor protein p53 2 2
MIRT614708 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT616823 HERC5 HECT and RLD domain containing E3 ubiquitin protein ligase 5 2 2
MIRT620652 CXCL5 C-X-C motif chemokine ligand 5 2 2
MIRT626770 CDC14B cell division cycle 14B 2 2
MIRT633598 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT634853 PTP4A2 protein tyrosine phosphatase type IVA, member 2 2 2
MIRT638138 TTC26 tetratricopeptide repeat domain 26 2 2
MIRT639574 GORASP1 golgi reassembly stacking protein 1 2 2
MIRT643710 ZNF736 zinc finger protein 736 2 2
MIRT644969 STEAP4 STEAP4 metalloreductase 2 2
MIRT645427 NINJ1 ninjurin 1 2 2
MIRT645939 HIPK1 homeodomain interacting protein kinase 1 2 2
MIRT646142 INTS7 integrator complex subunit 7 2 2
MIRT658015 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658995 DIP2C disco interacting protein 2 homolog C 2 2
MIRT675003 SLC22A17 solute carrier family 22 member 17 2 2
MIRT675553 SIK1 salt inducible kinase 1 2 2
MIRT675621 CSE1L chromosome segregation 1 like 2 2
MIRT675952 IDE insulin degrading enzyme 2 2
MIRT692250 POLR3F RNA polymerase III subunit F 2 2
MIRT698738 STX12 syntaxin 12 2 2
MIRT699001 SPAG9 sperm associated antigen 9 2 2
MIRT703275 GNG12 G protein subunit gamma 12 2 2
MIRT706268 MKLN1 muskelin 1 2 2
MIRT707633 TARDBP TAR DNA binding protein 2 2
MIRT709622 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712931 RPF2 ribosome production factor 2 homolog 2 2
MIRT713807 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT714036 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714388 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT714404 FBXO31 F-box protein 31 2 2
MIRT714599 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT714663 TPCN2 two pore segment channel 2 2 2
MIRT714882 GOLPH3 golgi phosphoprotein 3 2 2
MIRT725043 NDUFAF7 NADH:ubiquinone oxidoreductase complex assembly factor 7 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3529-3p Erlotinib 176870 NSC718781 approved sensitive High Head And Neck Squamous Cell Carcinoma cell line (HN6)
hsa-miR-3529-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)

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