pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM254   
Synonyms C10orf57, bA369J21.6
Description transmembrane protein 254
Transcript NM_025125   
Expression
Putative miRNA Targets on TMEM254
3'UTR of TMEM254
(miRNA target sites are highlighted)
>TMEM254|NM_025125|3'UTR
   1 AGTTGTCTGAAAGCTTGCTCTACACTTTTACATTCATCCTCACCCTTTTTTTTGTGGGGTAGAGGAGGTGCAGTAATTTA
  81 CTCAGTGATCTTTCTACTTTCTAGAAACTGTCCTTCAAAGCTCTTTAAGACCCCCTCGTTAGTCAGTTTTTTCTCTTATA
 161 TGCTCTGGTTGAGCTTGAATAGACCAGTTGTTACTTAAGAAAGAAACAGAGAAAGATTTTAGCTTTTCAATCCTATTTGG
 241 CAGAGGACTTCAGCTACCTTCTTACAGTCTTTGGCTGTGTTGGTACCCTCGTGTGCTCTGAGCTAAGCCACATACTAAAC
 321 TGACTTTTTGGTTTGTATACCCTTGCTCCCGCCTTCTGATGAAAACACCTTACCCTCACAACCACCATCTTTCCTCTCCT
 401 TTCCAAAGCTCTTTCCACCTTGCTGCACTAAGATAAAGTGACACTTCCACTATATGTCAATTCCACACACATTTATTAGG
 481 TACCTGTGAGGTAGGATCCTATCCTCTCAAACTTCCATTTCTCATGCTACAGAGAAAGATAAGGAAGATGAGCAAGTGCC
 561 TGGAATGGGGCAGGCTGAGCAGTCACACAGGCATAGAGGCACGCTGAGAACCTGGAGGGGAGACTGCAGAGTGCCTTCCC
 641 TGATGCTGCAGCCGGAAGTGATCCTTCCCTCCACCTGGCCCCTGGGACACTGTGCTCTGCAGTGTGCAGGGCCTGATGGC
 721 ACTGCTAGATTGCTCCTTCAGCTCAGGGCCACAGCTTAAACAGCTTTACCTTTCCCCTCAGCACCTGTCCCACTATCTTG
 801 CACACAGGTGCTCTAACCATGTTTATTGAACAAAGGAGGGAAACTGATTTCACTTTCACTTGTTCATTATCATTCCAATT
 881 TTTATGTGAAAATGGCACAACCCATTTGGGGTACCCTCACCCCAAAATAAAAGCCCAAGTCTACCTTTGACTGGTACCAC
 961 CTTTTTTGTGGTTTCGTTGGTGAGAAACCTTTATCTTTTTCATACCTTTCTATTCTCAATCACTTCTCCAAAAGTGTGTC
1041 TTTCCAGCTCTGATTTATTCAAAACACAAGCATTTCTGTTTAGAGATTCTAGCCCATGGGTTATCTGGCTAGTTATTACC
1121 TCTCCTGTTCACTTAGTTATACTTTATTATTGCTCACAGGCTGGGGAGGCAGAATGACTCTGTCACCACTAGGAGCCATT
1201 AGGGCTTCTTCCCTGGAGGACTGCCTGCTTGCTTTCTGGGGACACTAGCCCTCATTTCCCTTCTGTGGTACAGTGGGGCA
1281 AATTATTTGTATTAAGCAAACATTTATGGGAAACAACCCGCTCCCGAAAACGGAGCCCCCAAGTAAAGCACAACCCTGAA
1361 AGATTATGAACTATGAATTGTCTCTGGTAGAGATAAATTTCTGCAAACATATCTCAGTCTTCCCTCTGTTTCTCTGGTGA
1441 TTAAGAAGTTCCTTTTTGGTAAGGAAAAGGATTTTTAACCATAGAGTTAGGCATCATGGAAATTCAAACCAGATTTCTTA
1521 ATACCTGGTCTTCCTCAAAGAGAAATAATAACAGTAATAGTGGTGCTGGGAACAATATGGCAGATTATTGAATGAAATTG
1601 ATTAACTTGAATAAAATGCTGTGAATTTTCTCTAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUUCUGGU-UCGGA-GGAAGGGa 5'
            :||||:: ||  | ||||||| 
Target 5' ggGAGACTGCAGAGTGCCTTCCCt 3'
618 - 641 156.00 -19.90
2
miRNA  3' gauUCUGG--UUCG-GAGGAAGGGa 5'
             || ||  |||:  |||||||| 
Target 5' tgcAG-CCGGAAGTGATCCTTCCCt 3'
647 - 670 152.00 -19.40
3
miRNA  3' gaUUC--UGGUUCGGAGGAAGGGa 5'
            :||  |::|:| ||:|||||| 
Target 5' agGAGCCATTAGGGCTTCTTCCCt 3'
1191 - 1214 150.00 -21.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30517470 10 COSMIC
COSN30179787 25 COSMIC
COSN30180849 25 COSMIC
COSN26999017 46 COSMIC
COSN20057806 54 COSMIC
COSN27093511 60 COSMIC
COSN30487597 100 COSMIC
COSN31560924 111 COSMIC
COSN30519278 121 COSMIC
COSN20077015 126 COSMIC
COSN30528686 137 COSMIC
COSN31573453 138 COSMIC
COSN31536987 144 COSMIC
COSN20200977 588 COSMIC
COSN23849647 780 COSMIC
COSN5884916 1411 COSMIC
COSN20092154 1463 COSMIC
COSN22542899 1537 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs767554984 1 dbSNP
rs749154353 3 dbSNP
rs1330137105 7 dbSNP
rs1376704252 14 dbSNP
rs370895413 15 dbSNP
rs1248106830 20 dbSNP
rs893381423 24 dbSNP
rs768974789 29 dbSNP
rs1443700891 33 dbSNP
rs1383206164 36 dbSNP
rs776888973 40 dbSNP
rs761940736 42 dbSNP
rs1397370005 43 dbSNP
rs1368176182 45 dbSNP
rs1044655270 46 dbSNP
rs112287062 46 dbSNP
rs774495819 46 dbSNP
rs1438792493 53 dbSNP
rs906840212 55 dbSNP
rs1002521404 57 dbSNP
rs1192886692 60 dbSNP
rs1425527640 60 dbSNP
rs1452450083 65 dbSNP
rs1026001030 82 dbSNP
rs1193132957 89 dbSNP
rs1465399435 90 dbSNP
rs1244114651 102 dbSNP
rs1213838854 104 dbSNP
rs1357904557 105 dbSNP
rs1316728642 108 dbSNP
rs1467983846 115 dbSNP
rs950509847 119 dbSNP
rs565599353 122 dbSNP
rs1236927010 123 dbSNP
rs1303962783 129 dbSNP
rs1399567671 132 dbSNP
rs1346385910 136 dbSNP
rs752666533 138 dbSNP
rs534527713 139 dbSNP
rs964576320 146 dbSNP
rs975040504 161 dbSNP
rs923228188 162 dbSNP
rs1359552518 167 dbSNP
rs557504474 168 dbSNP
rs955546133 183 dbSNP
rs577395135 186 dbSNP
rs1394478937 191 dbSNP
rs1298860124 194 dbSNP
rs1313773795 197 dbSNP
rs1450186341 198 dbSNP
rs1263894049 204 dbSNP
rs570538747 206 dbSNP
rs536984068 207 dbSNP
rs1257366587 208 dbSNP
rs1213550541 212 dbSNP
rs1484887630 216 dbSNP
rs1280257223 225 dbSNP
rs111720254 231 dbSNP
rs934766029 233 dbSNP
rs1292762873 235 dbSNP
rs1213455926 236 dbSNP
rs1379494205 239 dbSNP
rs1054552297 240 dbSNP
rs189811140 250 dbSNP
rs914686594 257 dbSNP
rs948934695 258 dbSNP
rs1045029001 259 dbSNP
rs1308568461 266 dbSNP
rs1371241503 273 dbSNP
rs541809875 277 dbSNP
rs1427990297 278 dbSNP
rs1414870259 283 dbSNP
rs1189121900 287 dbSNP
rs1474432779 291 dbSNP
rs1257209324 292 dbSNP
rs1206531879 303 dbSNP
rs533183475 306 dbSNP
rs1250095538 313 dbSNP
rs757517919 316 dbSNP
rs562219136 325 dbSNP
rs1010281060 330 dbSNP
rs886111721 340 dbSNP
rs778939263 342 dbSNP
rs1177406208 347 dbSNP
rs1231007752 351 dbSNP
rs1005885573 352 dbSNP
rs1288800650 360 dbSNP
rs1392882822 363 dbSNP
rs182102329 364 dbSNP
rs1464100822 368 dbSNP
rs900302897 375 dbSNP
rs1172971193 376 dbSNP
rs1401149716 384 dbSNP
rs1435973069 388 dbSNP
rs1417391729 389 dbSNP
rs1183036049 392 dbSNP
rs1421247374 410 dbSNP
rs1249113395 411 dbSNP
rs996053893 414 dbSNP
rs1488526482 417 dbSNP
rs1030645799 431 dbSNP
rs746029450 438 dbSNP
rs1046707 448 dbSNP
rs1268359772 449 dbSNP
rs796692338 450 dbSNP
rs1240991899 451 dbSNP
rs1333708326 453 dbSNP
rs1387197698 455 dbSNP
rs1371848742 458 dbSNP
rs1328064513 459 dbSNP
rs1277486243 461 dbSNP
rs1394109079 471 dbSNP
rs1159358097 489 dbSNP
rs1316035645 489 dbSNP
rs986791771 490 dbSNP
rs776027643 496 dbSNP
rs1455121098 500 dbSNP
rs867143614 501 dbSNP
rs1191276563 507 dbSNP
rs1467626537 525 dbSNP
rs1219913970 530 dbSNP
rs1258090809 541 dbSNP
rs1206456659 559 dbSNP
rs758452753 565 dbSNP
rs1031646339 575 dbSNP
rs1320628543 577 dbSNP
rs186612363 580 dbSNP
rs796345962 582 dbSNP
rs1248153808 587 dbSNP
rs1350014907 599 dbSNP
rs879606412 603 dbSNP
rs192420986 613 dbSNP
rs948880874 614 dbSNP
rs980333763 627 dbSNP
rs1263070454 629 dbSNP
rs1383291441 634 dbSNP
rs867526591 637 dbSNP
rs928871601 654 dbSNP
rs1435719572 655 dbSNP
rs938900050 656 dbSNP
rs747483895 664 dbSNP
rs1424336911 673 dbSNP
rs1172253347 676 dbSNP
rs1404850271 680 dbSNP
rs886082280 681 dbSNP
rs777748708 691 dbSNP
rs941711592 691 dbSNP
rs1260571613 696 dbSNP
rs11639 706 dbSNP
rs1351907538 709 dbSNP
rs1458194840 711 dbSNP
rs1486522869 718 dbSNP
rs1278125348 722 dbSNP
rs1233394088 728 dbSNP
rs1037844658 730 dbSNP
rs1270799669 740 dbSNP
rs900274147 741 dbSNP
rs183870683 750 dbSNP
rs1324971738 752 dbSNP
rs369390667 755 dbSNP
rs1030199398 756 dbSNP
rs1415793807 759 dbSNP
rs1377582186 765 dbSNP
rs1401725756 771 dbSNP
rs777002575 778 dbSNP
rs1278769312 786 dbSNP
rs188823490 790 dbSNP
rs1397806771 791 dbSNP
rs1377737021 796 dbSNP
rs1226184631 808 dbSNP
rs999406637 812 dbSNP
rs545940985 826 dbSNP
rs955997532 828 dbSNP
rs762026029 839 dbSNP
rs1476070046 848 dbSNP
rs1255092590 849 dbSNP
rs1210109261 851 dbSNP
rs990189075 852 dbSNP
rs1275018737 860 dbSNP
rs1197685392 861 dbSNP
rs1337460716 866 dbSNP
rs1022123693 867 dbSNP
rs1234088034 869 dbSNP
rs766058115 873 dbSNP
rs773868764 891 dbSNP
rs1414518740 895 dbSNP
rs528893284 902 dbSNP
rs1215470633 905 dbSNP
rs1336942362 909 dbSNP
rs1331444042 911 dbSNP
rs1407729260 912 dbSNP
rs373692209 917 dbSNP
rs970199316 927 dbSNP
rs771123918 937 dbSNP
rs980599330 939 dbSNP
rs1462650527 943 dbSNP
rs111983207 944 dbSNP
rs1243253990 954 dbSNP
rs1470381481 955 dbSNP
rs1234540380 974 dbSNP
rs74143277 976 dbSNP
rs112612949 977 dbSNP
rs1447780889 978 dbSNP
rs941682227 990 dbSNP
rs1271506270 998 dbSNP
rs767110817 1003 dbSNP
rs1445415564 1007 dbSNP
rs1037411513 1011 dbSNP
rs1440601092 1013 dbSNP
rs1334688211 1020 dbSNP
rs1326057633 1024 dbSNP
rs1442431944 1030 dbSNP
rs921670060 1031 dbSNP
rs1163685222 1032 dbSNP
rs931716339 1038 dbSNP
rs192823942 1041 dbSNP
rs11201641 1059 dbSNP
rs1298728511 1061 dbSNP
rs1469606660 1072 dbSNP
rs999374102 1074 dbSNP
rs1194423722 1082 dbSNP
rs1445140915 1083 dbSNP
rs1285396580 1094 dbSNP
rs1052340667 1100 dbSNP
rs536845752 1112 dbSNP
rs893766044 1116 dbSNP
rs1317933822 1121 dbSNP
rs764070120 1123 dbSNP
rs1286727902 1124 dbSNP
rs1238886396 1142 dbSNP
rs1353675053 1148 dbSNP
rs1306641611 1161 dbSNP
rs1235865898 1165 dbSNP
rs1351938477 1180 dbSNP
rs1368058356 1181 dbSNP
rs78066698 1181 dbSNP
rs1292612195 1189 dbSNP
rs1011981900 1195 dbSNP
rs368925025 1199 dbSNP
rs1285543177 1205 dbSNP
rs1316007003 1205 dbSNP
rs1442402280 1209 dbSNP
rs1175376515 1213 dbSNP
rs557225681 1217 dbSNP
rs1455644692 1230 dbSNP
rs1393304937 1234 dbSNP
rs1190855906 1236 dbSNP
rs1486346632 1238 dbSNP
rs1244033052 1245 dbSNP
rs757001076 1246 dbSNP
rs1214182008 1251 dbSNP
rs1488133487 1252 dbSNP
rs770150921 1254 dbSNP
rs1281669891 1258 dbSNP
rs1208674467 1266 dbSNP
rs1021590120 1269 dbSNP
rs550565483 1280 dbSNP
rs1214613892 1282 dbSNP
rs1178198857 1285 dbSNP
rs1268033446 1290 dbSNP
rs1399180344 1292 dbSNP
rs573811615 1297 dbSNP
rs1314689672 1298 dbSNP
rs1441281475 1303 dbSNP
rs1358486506 1309 dbSNP
rs1280224858 1320 dbSNP
rs184257001 1321 dbSNP
rs1424229277 1322 dbSNP
rs1258593236 1326 dbSNP
rs113104047 1327 dbSNP
rs566103341 1332 dbSNP
rs1204673821 1333 dbSNP
rs113163061 1337 dbSNP
rs1270452082 1354 dbSNP
rs1217591796 1375 dbSNP
rs1355880506 1385 dbSNP
rs3156 1387 dbSNP
rs974070917 1391 dbSNP
rs578236251 1395 dbSNP
rs111237914 1409 dbSNP
rs1242743610 1411 dbSNP
rs1356311179 1411 dbSNP
rs1168822457 1412 dbSNP
rs1465343033 1413 dbSNP
rs1418807426 1415 dbSNP
rs1190597596 1426 dbSNP
rs1474423138 1433 dbSNP
rs1280456643 1434 dbSNP
rs557861704 1460 dbSNP
rs1217911766 1462 dbSNP
rs1481347705 1464 dbSNP
rs1281365692 1477 dbSNP
rs564026657 1486 dbSNP
rs1321622965 1490 dbSNP
rs1219907343 1493 dbSNP
rs142228076 1497 dbSNP
rs1335123564 1510 dbSNP
rs1198133101 1511 dbSNP
rs931661136 1514 dbSNP
rs780138855 1520 dbSNP
rs1320818791 1526 dbSNP
rs577690155 1530 dbSNP
rs1051496781 1541 dbSNP
rs1393013836 1543 dbSNP
rs911673906 1544 dbSNP
rs1329439157 1545 dbSNP
rs1446121818 1548 dbSNP
rs14598 1553 dbSNP
rs1395566521 1558 dbSNP
rs543287422 1560 dbSNP
rs1167293486 1569 dbSNP
rs1182836891 1573 dbSNP
rs935148540 1603 dbSNP
rs1368217620 1607 dbSNP
rs1160502138 1612 dbSNP
rs1421449686 1613 dbSNP
rs559119945 1617 dbSNP
rs1174229760 1622 dbSNP
rs1468532315 1628 dbSNP
rs113358488 1629 dbSNP
rs747041860 1635 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucggAGGAAGGGa 5'
                       |||||||| 
Target 5' ------------aUCCUUCCCu 3'
1 - 10
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000372281.3 | 3UTR | AUCCUUCCCUCCACCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

Error report submission