miRTarBase - #MIRT456341


—
pre-miRNA Information
pre-miRNA hsa-mir-3663   
Genomic Coordinates chr10: 117167678 - 117167774
Description Homo sapiens miR-3663 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3663-5p
Sequence 21| GCUGGUCUGCGUGGUGCUCGG |41
Evidence Experimental
Experiments Northern
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111525499 10 dbSNP
rs1186183324 11 dbSNP
rs1166397684 12 dbSNP
rs1391472885 17 dbSNP
rs1461514502 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RCSD1   
Synonyms CAPZIP, MK2S4
Description RCSD domain containing 1
Transcript NM_052862   
Expression
Putative miRNA Targets on RCSD1
3'UTR of RCSD1
(miRNA target sites are highlighted)		 
>RCSD1|NM_052862|3'UTR
   1 AGAACAGCTCATTGTGCCCCAGTGATGAAGTTGCTGGACACATCTCTTTGCAGGTAGCAGCAACAGTTGTAGCAGCAGCA
  81 GACGAAGCCATTGCAGAGGCAGAATATGCTGAGTGTCTGGAGTCAGCCTGAAGACACAGGGTGGATTATTTCCTGGCCTC
 161 CACACCAAACGTTCCCTTGCAGATGGAGACTGAATCTGAGGGCAGCAGACTTTTATCAGCTTGAGTTTATGTCATTTGAT
 241 GGACTTGGTTCAACAACAAGAACTTACTTAAAACAATGTACTGTGGTGATGAGTCCCAGGGGCACTGGTCAGCCTGTGGA
 321 GCCCTGGATGCTATCCACACCCACCTATCCCTGCAGCTAATTTAGCTGATCTCTAATTTAACTGAGCTCTAATTTAGCTG
 401 ATCAGATTTTGCTTGGGTAAAGTTCCTTTTTAATGTTCTAAAGTGTTTACGGTTCTCAAATATCAGTTAAAAACTAATTT
 481 TAGGTGGCCATAAACATAAAATAGAAACCCTGTAAGTTACAGAAGACCCTAAATTGTATCAAAACCCTAGAGACAACTTT
 561 TCAATTTGATCCAAATTTGAACTGGCCAACCAGTCTTTAAAACACTGGACTAGAAGAGATAATGATTGAAACATTTAAAA
 641 AAAAAAAGTGCTCCATTCGCAGGAGCTTTTCCTGTCCTGTGGTTTTCCAGTTGGTGACCACCATGGGAGGTCGCTGGCTC
 721 GGCTCACTCCCTTCTCCCACCCTTGAGAATGTGGAGAACTCCCATGGAGAGGCAGAATGGCAGGAGGTTTCATGTCCCGC
 801 GTTGCATCTCCTCCTGAAAGAAAAGCAGTGATACCTGAATAATGCTGGCTCTCCGATTGATCCTGTGAGGATGAATTTGC
 881 ATTTCCAGAATCCTTGAGCATGGATTAGATGTTTCCTGGGAGGTGCCTTGAGTACCATTATGTGCAAGCTACATAATTAA
 961 AACATTTTTCTTAGTTTCCCTGGGAAGCTTTTCTTGACTCACAGCCCAGGTTCTTCTGCCCAACACAAAAGGAGTGAGTT
1041 GGGGTCTTTAGTCTCTTCTTATTGGGTAGCTCTTGCTTTAATATTCTGTTTGGTGAGTGTAAGGGATTCTGCAAGGGACA
1121 GGGGGCCTGACTACCCAGTCTTTGACTTGTATCCTCTCCCCTCTTCATACACTCCTGCTGAAAAATGTTAATCCAAATAC
1201 ACATTTAAACTTAGGGTCGGTCCTTATTCTGATTTGAGTATTTTAATGTCTCAGTGTGCTGATTTGGTAGTTGGAAGAAT
1281 TATTCTTCTGGAGGTCTGTTAGACTACATCCTACACTGACTTCAGAAAACAGTCTGTCAGACAAAAAGGCCTTATGTCAC
1361 CACTGGTACCTCAGTTTCCTCATCCCATTTACAGTTTTTCTAACTCCAGGGTAGTGTTTAGTGTTAATATTTGGGATATA
1441 TTTTTTTTCAAAACTGTTTTTAAGTAGTTTGTAATTTGTAACAAACTTGTAACCTGGTTGGGACTGATATTGTCATAGCT
1521 ATGATAAACTTTGGATATTAGCAGAATTTGGGAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggCUC-GUGGUGCGUCUG-GUCg 5'
            ||| || | :| |||| ||| 
Target 5' tgGAGTCAGCCTGAAGACACAGg 3'
 118 - 140 127.00 -14.50
2 
miRNA  3' ggcucgUGGUGCGUCUGGUCg 5'
                | ||| ::|||:|| 
Target 5' ctttaaAACAC-TGGACTAGa 3'
 595 - 614 118.00 -10.00
3 
miRNA  3' ggcucgUGGUGCGUCUGGUCg 5'
                ||: | ||| |||| 
Target 5' ttcttgACT-CACAGCCCAGg 3'
 991 - 1010 118.00 -10.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31544100 3 COSMIC
COSN32053425 11 COSMIC
COSN30186015 54 COSMIC
COSN30480354 85 COSMIC
COSN30148129 97 COSMIC
COSN30488453 103 COSMIC
COSN26391384 145 COSMIC
COSN7183036 261 COSMIC
COSN20095548 360 COSMIC
COSN20095549 364 COSMIC
COSN20095550 376 COSMIC
COSN27583510 484 COSMIC
COSN216897 637 COSMIC
COSN20095551 648 COSMIC
COSN27445957 648 COSMIC
COSN25527095 714 COSMIC
COSN14631103 781 COSMIC
COSN22118162 1092 COSMIC
COSN27883036 1449 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1293054287 7 dbSNP
rs1290465717 11 dbSNP
rs747809389 12 dbSNP
rs1337186160 13 dbSNP
rs755791127 17 dbSNP
rs777451361 19 dbSNP
rs748883141 20 dbSNP
rs566335810 24 dbSNP
rs776132428 29 dbSNP
rs1227895052 34 dbSNP
rs747461480 38 dbSNP
rs769010302 39 dbSNP
rs1257797506 40 dbSNP
rs1406265306 50 dbSNP
rs1476036470 51 dbSNP
rs1281002303 77 dbSNP
rs1403757534 80 dbSNP
rs114533266 84 dbSNP
rs190615897 85 dbSNP
rs567795382 91 dbSNP
rs1407634556 103 dbSNP
rs895847709 108 dbSNP
rs1014232996 116 dbSNP
rs1425996985 121 dbSNP
rs1162885433 132 dbSNP
rs1480137018 139 dbSNP
rs759550840 149 dbSNP
rs1466654400 155 dbSNP
rs537830519 160 dbSNP
rs1000683426 163 dbSNP
rs926690962 164 dbSNP
rs1198988878 166 dbSNP
rs556556191 169 dbSNP
rs553214017 171 dbSNP
rs183191549 172 dbSNP
rs989052433 175 dbSNP
rs577195743 177 dbSNP
rs1222580028 183 dbSNP
rs1313815483 192 dbSNP
rs1367682478 196 dbSNP
rs917889005 205 dbSNP
rs572665227 207 dbSNP
rs543288088 210 dbSNP
rs141791115 211 dbSNP
rs1334451790 221 dbSNP
rs1041594305 225 dbSNP
rs1447939795 231 dbSNP
rs976349541 232 dbSNP
rs903050425 234 dbSNP
rs1469541575 235 dbSNP
rs150035648 236 dbSNP
rs921020779 237 dbSNP
rs1426143539 240 dbSNP
rs1174333853 243 dbSNP
rs1468687628 249 dbSNP
rs935826229 252 dbSNP
rs1234672406 254 dbSNP
rs1179227266 258 dbSNP
rs1458912473 259 dbSNP
rs1241106463 261 dbSNP
rs932452774 263 dbSNP
rs984274112 272 dbSNP
rs1312349958 278 dbSNP
rs1221530782 286 dbSNP
rs543829697 287 dbSNP
rs909739252 292 dbSNP
rs113446898 298 dbSNP
rs1040456436 299 dbSNP
rs533015174 299 dbSNP
rs1252985152 302 dbSNP
rs1479589885 304 dbSNP
rs1335064080 309 dbSNP
rs55766010 310 dbSNP
rs1026554415 311 dbSNP
rs1359915641 317 dbSNP
rs1336437640 325 dbSNP
rs950031494 339 dbSNP
rs1044452571 341 dbSNP
rs1441546032 346 dbSNP
rs532648085 355 dbSNP
rs201760943 356 dbSNP
rs1186057328 357 dbSNP
rs149533741 357 dbSNP
rs1417325647 359 dbSNP
rs386636511 359 dbSNP
rs1451713316 360 dbSNP
rs1478170818 362 dbSNP
rs1173223768 364 dbSNP
rs1353287777 366 dbSNP
rs4656551 371 dbSNP
rs560056523 373 dbSNP
rs552388500 374 dbSNP
rs770835557 374 dbSNP
rs1377590307 375 dbSNP
rs1416316291 376 dbSNP
rs146056978 379 dbSNP
rs145024614 380 dbSNP
rs747187008 380 dbSNP
rs1241688971 387 dbSNP
rs1422082307 412 dbSNP
rs145410761 414 dbSNP
rs1356398618 420 dbSNP
rs905858941 423 dbSNP
rs538356565 426 dbSNP
rs1000310352 432 dbSNP
rs1297045797 437 dbSNP
rs149207946 440 dbSNP
rs1286158284 445 dbSNP
rs1226533641 449 dbSNP
rs571677935 450 dbSNP
rs761795064 451 dbSNP
rs1385986573 452 dbSNP
rs1010337393 458 dbSNP
rs1421612848 479 dbSNP
rs566221578 484 dbSNP
rs1486526200 488 dbSNP
rs1209043912 493 dbSNP
rs1363591291 497 dbSNP
rs1162895058 503 dbSNP
rs539076677 510 dbSNP
rs966233494 522 dbSNP
rs1257047674 523 dbSNP
rs1184398818 542 dbSNP
rs1033812820 558 dbSNP
rs1263473983 559 dbSNP
rs959727159 560 dbSNP
rs1489657238 562 dbSNP
rs1486286425 565 dbSNP
rs996377439 575 dbSNP
rs1028027652 591 dbSNP
rs1188386978 596 dbSNP
rs953824365 614 dbSNP
rs1322686108 617 dbSNP
rs1417383250 619 dbSNP
rs1340059953 622 dbSNP
rs190838665 622 dbSNP
rs765553429 624 dbSNP
rs543526399 625 dbSNP
rs1174811608 635 dbSNP
rs1397318563 636 dbSNP
rs1351552134 637 dbSNP
rs386368639 637 dbSNP
rs572801558 637 dbSNP
rs71097691 637 dbSNP
rs961215593 638 dbSNP
rs1433224816 639 dbSNP
rs78891020 648 dbSNP
rs76934664 649 dbSNP
rs966665526 652 dbSNP
rs977339239 655 dbSNP
rs116444682 656 dbSNP
rs917082567 659 dbSNP
rs1479158409 660 dbSNP
rs935876951 662 dbSNP
rs1054699775 664 dbSNP
rs1489057659 666 dbSNP
rs1267774198 671 dbSNP
rs1202814057 680 dbSNP
rs1317730358 683 dbSNP
rs1258926184 692 dbSNP
rs910352378 696 dbSNP
rs1220751738 698 dbSNP
rs555158556 702 dbSNP
rs1321498516 705 dbSNP
rs1300594669 708 dbSNP
rs949989456 713 dbSNP
rs1044688555 714 dbSNP
rs1296414777 719 dbSNP
rs2297777 721 dbSNP
rs143246867 722 dbSNP
rs1054565001 730 dbSNP
rs891834874 732 dbSNP
rs13374782 737 dbSNP
rs544651431 738 dbSNP
rs751920722 741 dbSNP
rs1457586011 766 dbSNP
rs755518729 770 dbSNP
rs1200919104 779 dbSNP
rs959546180 783 dbSNP
rs112375789 785 dbSNP
rs996407044 792 dbSNP
rs1314062426 794 dbSNP
rs1304758345 796 dbSNP
rs1029644242 799 dbSNP
rs966717845 800 dbSNP
rs978060727 801 dbSNP
rs747764830 802 dbSNP
rs75315072 805 dbSNP
rs542425355 806 dbSNP
rs1005605164 808 dbSNP
rs542408940 817 dbSNP
rs1361617854 820 dbSNP
rs961080101 821 dbSNP
rs990059622 823 dbSNP
rs1439549828 826 dbSNP
rs1400990854 828 dbSNP
rs972477121 838 dbSNP
rs910399046 844 dbSNP
rs12060986 845 dbSNP
rs971207824 848 dbSNP
rs748590077 850 dbSNP
rs923011468 851 dbSNP
rs927180419 855 dbSNP
rs936020222 856 dbSNP
rs1047435373 858 dbSNP
rs774155467 862 dbSNP
rs1452597283 868 dbSNP
rs913227279 870 dbSNP
rs1311406388 874 dbSNP
rs1243453846 883 dbSNP
rs887411109 885 dbSNP
rs1312967231 897 dbSNP
rs946174095 908 dbSNP
rs942296728 909 dbSNP
rs759194416 920 dbSNP
rs902047932 921 dbSNP
rs1361689373 931 dbSNP
rs996718313 936 dbSNP
rs73035746 955 dbSNP
rs1225727799 961 dbSNP
rs887985531 973 dbSNP
rs1425715514 978 dbSNP
rs1261324407 980 dbSNP
rs1192984328 982 dbSNP
rs1025054596 994 dbSNP
rs902608647 996 dbSNP
rs1288043036 999 dbSNP
rs1316511397 1003 dbSNP
rs1005223231 1006 dbSNP
rs999533007 1009 dbSNP
rs1017052697 1011 dbSNP
rs4537529 1014 dbSNP
rs79385710 1025 dbSNP
rs993948563 1036 dbSNP
rs1024034585 1040 dbSNP
rs1178624882 1041 dbSNP
rs772051291 1043 dbSNP
rs571814338 1048 dbSNP
rs182599544 1060 dbSNP
rs1164142263 1062 dbSNP
rs1459792403 1063 dbSNP
rs980304718 1067 dbSNP
rs1193272839 1076 dbSNP
rs1395961064 1092 dbSNP
rs113105530 1100 dbSNP
rs1459863235 1124 dbSNP
rs1034278812 1126 dbSNP
rs1450903268 1129 dbSNP
rs1267997154 1132 dbSNP
rs1211369696 1137 dbSNP
rs1315878584 1138 dbSNP
rs547844087 1148 dbSNP
rs1257003487 1150 dbSNP
rs1354945872 1153 dbSNP
rs1444140513 1164 dbSNP
rs923063931 1168 dbSNP
rs1319382351 1172 dbSNP
rs1280735692 1175 dbSNP
rs929052091 1188 dbSNP
rs1372879347 1204 dbSNP
rs566340374 1215 dbSNP
rs758865991 1217 dbSNP
rs990080910 1219 dbSNP
rs536976529 1220 dbSNP
rs941692875 1249 dbSNP
rs1055822099 1260 dbSNP
rs1213667727 1262 dbSNP
rs1466274669 1262 dbSNP
rs913258326 1263 dbSNP
rs1170842783 1270 dbSNP
rs946036744 1286 dbSNP
rs765374452 1292 dbSNP
rs1378101706 1299 dbSNP
rs923332791 1303 dbSNP
rs949629014 1311 dbSNP
rs1202896847 1320 dbSNP
rs1232593904 1333 dbSNP
rs1458776722 1342 dbSNP
rs1472067638 1348 dbSNP
rs1218092914 1354 dbSNP
rs1315129345 1359 dbSNP
rs1188203442 1365 dbSNP
rs1237225818 1380 dbSNP
rs554820689 1388 dbSNP
rs902662568 1391 dbSNP
rs1473928121 1395 dbSNP
rs76293768 1410 dbSNP
rs1050994731 1411 dbSNP
rs1332486964 1412 dbSNP
rs999585209 1416 dbSNP
rs570244039 1428 dbSNP
rs1174243105 1437 dbSNP
rs57447766 1440 dbSNP
rs887942536 1440 dbSNP
rs1006889643 1441 dbSNP
rs893833772 1441 dbSNP
rs1018651200 1454 dbSNP
rs1235356163 1459 dbSNP
rs778008787 1465 dbSNP
rs1442489135 1473 dbSNP
rs188021851 1477 dbSNP
rs1213839489 1478 dbSNP
rs975966227 1487 dbSNP
rs1326625515 1488 dbSNP
rs1036605938 1494 dbSNP
rs1241368208 1505 dbSNP
rs1030187020 1517 dbSNP
rs1369706507 1520 dbSNP
rs1447487883 1526 dbSNP
rs896839915 1527 dbSNP
rs993812669 1530 dbSNP
rs747344809 1533 dbSNP
rs906913912 1534 dbSNP
rs1314908523 1542 dbSNP
rs191764428 1556 dbSNP
rs1001283761 1558 dbSNP
rs112120839 1559 dbSNP
rs544589971 1564 dbSNP
rs1159134246 1566 dbSNP
rs1244182943 1570 dbSNP
rs1270801983 1578 dbSNP
rs1411282734 1579 dbSNP
rs1342086988 1584 dbSNP
rs990502180 1588 dbSNP
rs1181069481 1589 dbSNP
rs1213265661 1595 dbSNP
rs1238825618 1600 dbSNP
rs983229620 1600 dbSNP
rs12116771 1603 dbSNP
rs1217917193 1604 dbSNP
rs1319109664 1609 dbSNP
rs1288255375 1619 dbSNP
rs941732138 1627 dbSNP
rs1228092387 1632 dbSNP
rs1380226916 1637 dbSNP
rs1211203236 1639 dbSNP
rs1295315071 1642 dbSNP
rs1259211550 1652 dbSNP
rs1398259873 1655 dbSNP
rs1339865271 1674 dbSNP
rs41270730 1683 dbSNP
rs1186232388 1687 dbSNP
rs976014628 1691 dbSNP
rs1348038314 1693 dbSNP
rs1163874511 1695 dbSNP
rs1405709324 1702 dbSNP
rs923363641 1707 dbSNP
rs1168035098 1709 dbSNP
rs1953694 1717 dbSNP
rs1263194248 1720 dbSNP
rs1195206800 1733 dbSNP
rs1487169979 1741 dbSNP
rs768131792 1752 dbSNP
rs74956537 1753 dbSNP
rs949651951 1757 dbSNP
rs1322651128 1760 dbSNP
rs942185364 1763 dbSNP
rs1046609361 1764 dbSNP
rs112292606 1781 dbSNP
rs3075157 1781 dbSNP
rs924140036 1783 dbSNP
rs1383978809 1786 dbSNP
rs935492429 1787 dbSNP
rs1053837500 1790 dbSNP
rs1436961242 1791 dbSNP
rs1036636547 1797 dbSNP
rs893893526 1801 dbSNP
rs1328877824 1803 dbSNP
rs1464839935 1806 dbSNP
rs10465569 1814 dbSNP
rs543278183 1819 dbSNP
rs1171961629 1824 dbSNP
rs1430917185 1836 dbSNP
rs929636761 1840 dbSNP
rs1423719212 1858 dbSNP
rs1191072323 1867 dbSNP
rs1045458816 1878 dbSNP
rs184274194 1879 dbSNP
rs1328262000 1883 dbSNP
rs755693823 1885 dbSNP
rs901144263 1895 dbSNP
rs906866573 1897 dbSNP
rs187461975 1912 dbSNP
rs997456555 1917 dbSNP
rs1300521909 1918 dbSNP
rs1001714870 1919 dbSNP
rs1373091983 1920 dbSNP
rs1055536129 1923 dbSNP
rs892972161 1930 dbSNP
rs1306880781 1936 dbSNP
rs1030241375 1945 dbSNP
rs1299483824 1952 dbSNP
rs1307820564 1956 dbSNP
rs1349171385 1958 dbSNP
rs1358010946 1976 dbSNP
rs1206390741 1977 dbSNP
rs1237000378 1986 dbSNP
rs1175978229 1996 dbSNP
rs950565726 1996 dbSNP
rs192217981 2004 dbSNP
rs868513846 2006 dbSNP
rs1439430477 2007 dbSNP
rs1345311632 2010 dbSNP
rs1239043551 2011 dbSNP
rs1016474542 2012 dbSNP
rs1199518022 2024 dbSNP
rs1482320728 2024 dbSNP
rs1255553752 2027 dbSNP
rs963167868 2028 dbSNP
rs1011339780 2031 dbSNP
rs1261906844 2037 dbSNP
rs1448194505 2041 dbSNP
rs990947316 2054 dbSNP
rs35746917 2071 dbSNP
rs1306947577 2085 dbSNP
rs1239193132 2104 dbSNP
rs1377296488 2113 dbSNP
rs1308709563 2116 dbSNP
rs1190997407 2122 dbSNP
rs1393862769 2129 dbSNP
rs916268262 2136 dbSNP
rs970349463 2141 dbSNP
rs201564690 2142 dbSNP
rs1157334083 2151 dbSNP
rs1454627869 2154 dbSNP
rs1364676556 2157 dbSNP
rs1184421861 2158 dbSNP
rs982361799 2166 dbSNP
rs1020159047 2167 dbSNP
rs1195267719 2171 dbSNP
rs935546183 2174 dbSNP
rs185571354 2181 dbSNP
rs530291481 2197 dbSNP
rs1283824470 2214 dbSNP
rs574571394 2218 dbSNP
rs116070238 2223 dbSNP
rs1030327290 2232 dbSNP
rs1354149868 2236 dbSNP
rs1262334234 2238 dbSNP
rs7521359 2260 dbSNP
rs986635675 2263 dbSNP
rs909276312 2264 dbSNP
rs138308609 2266 dbSNP
rs972193093 2272 dbSNP
rs1372369729 2273 dbSNP
rs141736488 2274 dbSNP
rs865827565 2281 dbSNP
rs1400000089 2285 dbSNP
rs115612017 2286 dbSNP
rs886361206 2291 dbSNP
rs190400135 2295 dbSNP
rs1004768841 2303 dbSNP
rs1368144644 2306 dbSNP
rs1165864943 2307 dbSNP
rs1016112639 2320 dbSNP
rs553309478 2321 dbSNP
rs1012023756 2322 dbSNP
rs535942486 2323 dbSNP
rs1330883630 2327 dbSNP
rs1232134033 2331 dbSNP
rs928317754 2340 dbSNP
rs1260928713 2344 dbSNP
rs1355321248 2349 dbSNP
rs1352332814 2367 dbSNP
rs1206315469 2369 dbSNP
rs1273443414 2371 dbSNP
rs1234676704 2378 dbSNP
rs57724413 2389 dbSNP
rs555582329 2396 dbSNP
rs981744199 2399 dbSNP
rs892846674 2404 dbSNP
rs180714700 2407 dbSNP
rs150129695 2408 dbSNP
rs369977029 2417 dbSNP
rs1933075 2432 dbSNP
rs1390394425 2443 dbSNP
rs565095655 2444 dbSNP
rs997419691 2447 dbSNP
rs1030220787 2468 dbSNP
rs953525265 2469 dbSNP
rs1463271690 2470 dbSNP
rs1421734441 2471 dbSNP
rs12059111 2479 dbSNP
rs773436881 2482 dbSNP
rs922681453 2501 dbSNP
rs1395294249 2506 dbSNP
rs1196591426 2512 dbSNP
rs1463542232 2513 dbSNP
rs1324439538 2514 dbSNP
rs1215319895 2517 dbSNP
rs963490107 2518 dbSNP
rs541549091 2519 dbSNP
rs1195904803 2522 dbSNP
rs184317763 2530 dbSNP
rs970871989 2537 dbSNP
rs530105378 2541 dbSNP
rs1309549698 2542 dbSNP
rs1443531839 2547 dbSNP
rs1398418521 2554 dbSNP
rs548321127 2562 dbSNP
rs887078131 2566 dbSNP
rs1398647752 2569 dbSNP
rs1170891250 2570 dbSNP
rs940637721 2572 dbSNP
rs982372409 2579 dbSNP
rs1395588929 2586 dbSNP
rs1195310623 2594 dbSNP
rs563993620 2599 dbSNP
rs926872000 2601 dbSNP
rs1337164920 2605 dbSNP
rs1437546559 2612 dbSNP
rs558001160 2616 dbSNP
rs1038004613 2624 dbSNP
rs1204705830 2629 dbSNP
rs937005523 2638 dbSNP
rs1287221883 2640 dbSNP
rs1347847241 2645 dbSNP
rs531127500 2653 dbSNP
rs767198254 2664 dbSNP
rs914212326 2666 dbSNP
rs1003215037 2667 dbSNP
rs1337742988 2668 dbSNP
rs1332329398 2669 dbSNP
rs1413948575 2679 dbSNP
rs763056285 2687 dbSNP
rs552326827 2688 dbSNP
rs956353671 2702 dbSNP
rs1417643968 2735 dbSNP
rs1177562511 2736 dbSNP
rs766770560 2739 dbSNP
rs1252336791 2749 dbSNP
rs903039046 2756 dbSNP
rs933132824 2761 dbSNP
rs964285076 2764 dbSNP
rs975991105 2765 dbSNP
rs1418720995 2767 dbSNP
rs922733991 2771 dbSNP
rs1213569071 2772 dbSNP
rs1258846849 2772 dbSNP
rs1352148522 2781 dbSNP
rs1933076 2786 dbSNP
rs759998202 2791 dbSNP
rs908568594 2797 dbSNP
rs1414268303 2798 dbSNP
rs149340244 2798 dbSNP
rs889005884 2806 dbSNP
rs534927310 2812 dbSNP
rs547085916 2818 dbSNP
rs899080444 2824 dbSNP
rs1344515975 2826 dbSNP
rs1368431821 2838 dbSNP
rs1462882579 2841 dbSNP
rs1159619819 2848 dbSNP
rs947962224 2849 dbSNP
rs1016305900 2850 dbSNP
rs565666134 2851 dbSNP
rs993611170 2853 dbSNP
rs368736456 2856 dbSNP
rs77118981 2869 dbSNP
rs1487622741 2877 dbSNP
rs554281576 2880 dbSNP
rs1306991220 2884 dbSNP
rs1030693880 2887 dbSNP
rs892163959 2887 dbSNP
rs1010987238 2890 dbSNP
rs767745185 2892 dbSNP
rs1172943742 2898 dbSNP
rs1234614713 2898 dbSNP
rs1216846373 2909 dbSNP
rs1361233709 2910 dbSNP
rs982262008 2911 dbSNP
rs557020433 2912 dbSNP
rs1347837775 2914 dbSNP
rs753068502 2927 dbSNP
rs1324972346 2931 dbSNP
rs1228049271 2932 dbSNP
rs4357507 2936 dbSNP
rs1167967753 2937 dbSNP
rs558746686 2946 dbSNP
rs990134786 2947 dbSNP
rs1481934951 2949 dbSNP
rs1419454300 2950 dbSNP
rs1187553901 2952 dbSNP
rs1476595448 2953 dbSNP
rs1204773834 2956 dbSNP
rs1258517851 2958 dbSNP
rs1469109419 2960 dbSNP
rs1486755577 2961 dbSNP
rs1180194597 2963 dbSNP
rs559739148 2964 dbSNP
rs942360204 2966 dbSNP
rs1029854446 2970 dbSNP
rs1196862527 2971 dbSNP
rs1306938106 2971 dbSNP
rs577105766 2972 dbSNP
rs1216330115 2973 dbSNP
rs1365394527 2976 dbSNP
rs1441324593 2976 dbSNP
rs71958362 2976 dbSNP
rs1396266340 2977 dbSNP
rs1328811743 2978 dbSNP
rs80278754 2986 dbSNP
rs1354547555 2988 dbSNP
rs1171898356 2992 dbSNP
rs1430866713 2994 dbSNP
rs1393780555 3002 dbSNP
rs764529467 3003 dbSNP
rs541276421 3004 dbSNP
rs947026851 3005 dbSNP
rs977161103 3023 dbSNP
rs559617852 3037 dbSNP
rs1176933446 3043 dbSNP
rs1480428806 3044 dbSNP
rs962785702 3046 dbSNP
rs1174601100 3054 dbSNP
rs924328016 3064 dbSNP
rs933165344 3065 dbSNP
rs974487496 3067 dbSNP
rs1279472981 3071 dbSNP
rs188342281 3074 dbSNP
rs1372837835 3075 dbSNP
rs111594576 3081 dbSNP
rs542174688 3082 dbSNP
rs1464075599 3098 dbSNP
rs756756277 3107 dbSNP
rs1300630617 3111 dbSNP
rs573049479 3118 dbSNP
rs927827761 3119 dbSNP
rs939178253 3122 dbSNP
rs1418776196 3124 dbSNP
rs1251480656 3130 dbSNP
rs1179057682 3133 dbSNP
rs1297613339 3134 dbSNP
rs1052176615 3138 dbSNP
rs563556026 3141 dbSNP
rs892214052 3145 dbSNP
rs181126927 3147 dbSNP
rs1238033620 3148 dbSNP
rs993473146 3150 dbSNP
rs1026403875 3152 dbSNP
rs545339892 3155 dbSNP
rs1010622873 3156 dbSNP
rs758027109 3157 dbSNP
rs899474233 3159 dbSNP
rs997125605 3161 dbSNP
rs1377778871 3164 dbSNP
rs185614002 3180 dbSNP
rs1287533461 3185 dbSNP
rs373627157 3187 dbSNP
rs1486215435 3190 dbSNP
rs1453449108 3197 dbSNP
rs1364623309 3200 dbSNP
rs1161484148 3201 dbSNP
rs959786695 3202 dbSNP
rs989775238 3215 dbSNP
rs1417325457 3216 dbSNP
rs1188728996 3218 dbSNP
rs1486639304 3220 dbSNP
rs1259535892 3226 dbSNP
rs1204360927 3231 dbSNP
rs955559187 3232 dbSNP
rs1262134225 3250 dbSNP
rs1022482279 3252 dbSNP
rs1015727771 3253 dbSNP
rs1397256865 3260 dbSNP
rs968359818 3287 dbSNP
rs977024851 3289 dbSNP
rs1234562956 3290 dbSNP
rs924274284 3303 dbSNP
rs1415885424 3313 dbSNP
rs1316794697 3316 dbSNP
rs1173481839 3320 dbSNP
rs1382025525 3329 dbSNP
rs1358124356 3337 dbSNP
rs933125595 3354 dbSNP
rs564485293 3357 dbSNP
rs945876 3359 dbSNP
rs943168842 3368 dbSNP
rs1192303786 3369 dbSNP
rs970070041 3369 dbSNP
rs980688493 3373 dbSNP
rs758846352 3374 dbSNP
rs927881610 3378 dbSNP
rs1467786917 3381 dbSNP
rs1037642288 3385 dbSNP
rs1215045320 3389 dbSNP
rs1336814481 3390 dbSNP
rs746757566 3398 dbSNP
rs1434200501 3402 dbSNP
rs939233721 3407 dbSNP
rs1327516493 3416 dbSNP
rs920470717 3417 dbSNP
rs1439118867 3423 dbSNP
rs1372895983 3424 dbSNP
rs1059361 3426 dbSNP
rs913707583 3438 dbSNP
rs1300820194 3442 dbSNP
rs1047793893 3452 dbSNP
rs1394338097 3453 dbSNP
rs1167402100 3458 dbSNP
rs1462479019 3465 dbSNP
rs1191551877 3466 dbSNP
rs747367741 3470 dbSNP
rs1453525570 3478 dbSNP
rs1253254565 3483 dbSNP
rs1195040244 3489 dbSNP
rs906528100 3490 dbSNP
rs565734180 3492 dbSNP
rs776700784 3515 dbSNP
rs1055604009 3516 dbSNP
rs1218076174 3519 dbSNP
rs895336663 3522 dbSNP
rs899528307 3527 dbSNP
rs114265132 3529 dbSNP
rs749433666 3530 dbSNP
rs1051387259 3539 dbSNP
rs1304442416 3540 dbSNP
rs1443463640 3543 dbSNP
rs548121371 3547 dbSNP
rs569560725 3548 dbSNP
rs891390805 3550 dbSNP
rs1004437088 3565 dbSNP
rs78272044 3570 dbSNP
rs1477232659 3574 dbSNP
rs1171618752 3578 dbSNP
rs549954625 3581 dbSNP
rs1424074005 3586 dbSNP
rs190376152 3587 dbSNP
rs996025291 3588 dbSNP
rs1468323618 3589 dbSNP
rs563691813 3596 dbSNP
rs1231922583 3600 dbSNP
rs1181942780 3610 dbSNP
rs534797400 3617 dbSNP
rs1254605913 3619 dbSNP
rs552910934 3620 dbSNP
rs1347781891 3624 dbSNP
rs1385787277 3633 dbSNP
rs149316273 3639 dbSNP
rs759711102 3644 dbSNP
rs1396469455 3647 dbSNP
rs1279141128 3665 dbSNP
rs1239883162 3667 dbSNP
rs1352342499 3674 dbSNP
rs6659771 3685 dbSNP
rs973198868 3686 dbSNP
rs1273989286 3687 dbSNP
rs557468572 3693 dbSNP
rs575229030 3695 dbSNP
rs1398698307 3705 dbSNP
rs114357877 3712 dbSNP
rs913751287 3714 dbSNP
rs181816380 3715 dbSNP
rs1234493604 3723 dbSNP
rs979627187 3724 dbSNP
rs760962536 3725 dbSNP
rs1258782392 3727 dbSNP
rs1221305608 3733 dbSNP
rs1445583244 3735 dbSNP
rs1283835937 3737 dbSNP
rs764652444 3744 dbSNP
rs1224613159 3747 dbSNP
rs754320736 3752 dbSNP
rs78220041 3753 dbSNP
rs890770023 3754 dbSNP
rs1480786165 3758 dbSNP
rs1285828702 3761 dbSNP
rs1428395401 3766 dbSNP
rs1344315298 3782 dbSNP
rs1318721418 3783 dbSNP
rs1402142314 3793 dbSNP
rs1391802590 3795 dbSNP
rs1163622516 3804 dbSNP
rs1183888321 3821 dbSNP
rs895188575 3825 dbSNP
rs1409177547 3844 dbSNP
rs540792387 3845 dbSNP
rs1419226751 3846 dbSNP
rs1010985917 3856 dbSNP
rs1037273387 3857 dbSNP
rs35752510 3858 dbSNP
rs1043914708 3890 dbSNP
rs1164944869 3903 dbSNP
rs562144969 3909 dbSNP
rs1241961435 3916 dbSNP
rs898692897 3917 dbSNP
rs1466455484 3924 dbSNP
rs1362196665 3927 dbSNP
rs1335481169 3931 dbSNP
rs764682143 3932 dbSNP
rs1403470984 3946 dbSNP
rs187213627 3958 dbSNP
rs147424858 3959 dbSNP
rs1029842420 3963 dbSNP
rs1002884877 3979 dbSNP
rs569779846 3991 dbSNP
rs1008939747 3993 dbSNP
rs1415513108 3996 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ggcucguggugcgUCUGGucg 5'
                       |||||   
Target 5' -auuuuuuaguagAGACC--- 3'
 		1 - 17
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000367854.3 | 3UTR | AUUUUUUAGUAGAGACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
203 hsa-miR-3663-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT222528 CRCP CGRP receptor component 2 2
MIRT442432 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 6
MIRT450423 BCL2L14 BCL2 like 14 2 2
MIRT456341 RCSD1 RCSD domain containing 1 2 2
MIRT479763 CCND1 cyclin D1 2 2
MIRT487162 IFRD1 interferon related developmental regulator 1 2 8
MIRT495471 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT497193 DUSP18 dual specificity phosphatase 18 2 2
MIRT499717 PAGR1 PAXIP1 associated glutamate rich protein 1 2 10
MIRT502681 CSNK1G3 casein kinase 1 gamma 3 2 8
MIRT503641 POLR2F RNA polymerase II subunit F 2 4
MIRT510824 SBNO1 strawberry notch homolog 1 2 4
MIRT512347 ZNF665 zinc finger protein 665 2 4
MIRT512528 ATCAY ATCAY, caytaxin 2 4
MIRT513246 FBXO17 F-box protein 17 2 4
MIRT513502 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT516033 PTAFR platelet activating factor receptor 2 2
MIRT517669 TRIM72 tripartite motif containing 72 2 2
MIRT517691 FAM175A abraxas 1, BRCA1 A complex subunit 2 2
MIRT519524 ZNF8 zinc finger protein 8 2 2
MIRT520953 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT522074 ORAI2 ORAI calcium release-activated calcium modulator 2 2 4
MIRT525333 CNGB1 cyclic nucleotide gated channel beta 1 2 2
MIRT526504 POU5F1B POU class 5 homeobox 1B 2 2
MIRT527847 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT529211 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT530071 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT530639 PPIC peptidylprolyl isomerase C 2 4
MIRT530679 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT532177 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT532432 DHX33 DEAH-box helicase 33 2 2
MIRT532832 ZNF704 zinc finger protein 704 2 2
MIRT534236 SLC25A16 solute carrier family 25 member 16 2 4
MIRT535115 PLXNA2 plexin A2 2 2
MIRT535563 OMD osteomodulin 2 2
MIRT536487 KIAA1468 KIAA1468 2 2
MIRT538371 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT539931 NUCB1 nucleobindin 1 2 4
MIRT562305 GINM1 glycoprotein integral membrane 1 2 2
MIRT563280 BBS10 Bardet-Biedl syndrome 10 2 2
MIRT618205 C22orf39 chromosome 22 open reading frame 39 2 2
MIRT620113 HARBI1 harbinger transposase derived 1 2 2
MIRT621189 FAM153B family with sequence similarity 153 member B 2 2
MIRT623755 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT624059 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT625016 TMIGD2 transmembrane and immunoglobulin domain containing 2 2 2
MIRT626073 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT627875 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT629306 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT630446 IDE insulin degrading enzyme 2 2
MIRT631000 ZNF573 zinc finger protein 573 2 2
MIRT631093 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT631282 SGSM1 small G protein signaling modulator 1 2 2
MIRT631530 MYO6 myosin VI 2 2
MIRT631642 WDR91 WD repeat domain 91 2 4
MIRT631825 TMEM154 transmembrane protein 154 2 2
MIRT632778 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT633278 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT633658 SLC28A1 solute carrier family 28 member 1 2 2
MIRT634071 PLIN3 perilipin 3 2 2
MIRT634159 YME1L1 YME1 like 1 ATPase 2 2
MIRT634227 TMEM132B transmembrane protein 132B 2 2
MIRT636401 MYO5A myosin VA 2 2
MIRT638678 GCLM glutamate-cysteine ligase modifier subunit 2 2
MIRT640231 TOMM40 translocase of outer mitochondrial membrane 40 2 2
MIRT640304 PRR13 proline rich 13 2 2
MIRT641125 NPHP3 nephrocystin 3 2 2
MIRT643422 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT643700 KIAA0586 KIAA0586 2 2
MIRT644314 NFKBID NFKB inhibitor delta 2 2
MIRT644345 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT645736 POLR3A RNA polymerase III subunit A 2 2
MIRT648058 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT649462 UBA5 ubiquitin like modifier activating enzyme 5 2 2
MIRT650009 KLB klotho beta 2 2
MIRT650567 YIPF4 Yip1 domain family member 4 2 2
MIRT652639 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT653887 SGK3 serum/glucocorticoid regulated kinase family member 3 2 2
MIRT655369 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT659116 DENND6A DENN domain containing 6A 2 2
MIRT659520 CHST3 carbohydrate sulfotransferase 3 2 2
MIRT659946 C8orf44-SGK3 C8orf44-SGK3 readthrough 2 2
MIRT661384 RHCG Rh family C glycoprotein 2 2
MIRT662910 MED18 mediator complex subunit 18 2 2
MIRT663107 NPR1 natriuretic peptide receptor 1 2 2
MIRT663759 ZNF285 zinc finger protein 285 2 2
MIRT664554 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT664611 LIMD1 LIM domains containing 1 2 2
MIRT666193 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT666794 PSMD1 proteasome 26S subunit, non-ATPase 1 2 2
MIRT668752 DDX19B DEAD-box helicase 19B 2 2
MIRT669601 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669704 AAK1 AP2 associated kinase 1 2 2
MIRT669812 STOML1 stomatin like 1 2 2
MIRT669927 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT669951 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670005 GPR156 G protein-coupled receptor 156 2 4
MIRT670051 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670301 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670390 EMP2 epithelial membrane protein 2 2 2
MIRT670457 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670486 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670568 GLTP glycolipid transfer protein 2 2
MIRT671061 KIF1B kinesin family member 1B 2 2
MIRT671085 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT671306 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671807 WISP3 WNT1 inducible signaling pathway protein 3 2 2
MIRT671956 SPPL3 signal peptide peptidase like 3 2 2
MIRT671993 OSTF1 osteoclast stimulating factor 1 2 2
MIRT672092 WDR5B WD repeat domain 5B 2 2
MIRT672273 SHE Src homology 2 domain containing E 2 2
MIRT672447 TTPAL alpha tocopherol transfer protein like 2 2
MIRT672451 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT673652 CYCS cytochrome c, somatic 2 2
MIRT674003 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674054 ATXN3 ataxin 3 2 2
MIRT674248 NUP62 nucleoporin 62 2 2
MIRT674437 MIOX myo-inositol oxygenase 2 4
MIRT674476 BCL2L15 BCL2 like 15 2 2
MIRT675472 NUBPL nucleotide binding protein like 2 2
MIRT675667 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT675978 FAM126B family with sequence similarity 126 member B 2 2
MIRT676064 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT676120 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT676241 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT676257 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676388 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676744 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT676880 ENSA endosulfine alpha 2 2
MIRT676905 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT676922 KLHDC8A kelch domain containing 8A 2 2
MIRT676968 RNF19B ring finger protein 19B 2 2
MIRT677048 ZNF34 zinc finger protein 34 2 2
MIRT677114 SS18L1 SS18L1, nBAF chromatin remodeling complex subunit 2 2
MIRT677324 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677466 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677584 TRIM65 tripartite motif containing 65 2 2
MIRT677646 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT677736 MOB4 MOB family member 4, phocein 2 2
MIRT677813 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677830 TSPYL1 TSPY like 1 2 2
MIRT678083 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678158 ZNF724P zinc finger protein 724 2 2
MIRT678256 FXN frataxin 2 2
MIRT678326 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678419 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678588 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT678598 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT678831 PDE6A phosphodiesterase 6A 2 2
MIRT678945 MYADM myeloid associated differentiation marker 2 2
MIRT679046 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT679201 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT679205 FAM9B family with sequence similarity 9 member B 2 2
MIRT679223 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679270 POLM DNA polymerase mu 2 2
MIRT679288 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT679316 NPHP1 nephrocystin 1 2 2
MIRT679485 CYTIP cytohesin 1 interacting protein 2 2
MIRT679551 LIPG lipase G, endothelial type 2 2
MIRT679625 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT679649 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT679761 TLR6 toll like receptor 6 2 2
MIRT680124 ZNF576 zinc finger protein 576 2 2
MIRT680186 ZNF554 zinc finger protein 554 2 2
MIRT684282 CDK9 cyclin dependent kinase 9 2 2
MIRT689671 RBM23 RNA binding motif protein 23 2 2
MIRT690031 CCDC90B coiled-coil domain containing 90B 2 2
MIRT691447 CXorf36 chromosome X open reading frame 36 2 2
MIRT691547 FLYWCH2 FLYWCH family member 2 2 2
MIRT691726 LARS leucyl-tRNA synthetase 2 2
MIRT692029 ARSK arylsulfatase family member K 2 2
MIRT692635 SUSD1 sushi domain containing 1 2 2
MIRT693823 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT693864 IYD iodotyrosine deiodinase 2 2
MIRT693977 ZNF70 zinc finger protein 70 2 2
MIRT694145 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT695486 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695544 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695599 TMEM199 transmembrane protein 199 2 2
MIRT696003 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696020 TYRO3 TYRO3 protein tyrosine kinase 2 2
MIRT696039 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT696310 NIP7 NIP7, nucleolar pre-rRNA processing protein 2 2
MIRT696400 CORO7 coronin 7 2 2
MIRT696595 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT698044 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT698139 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT702561 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT703018 HEATR5A HEAT repeat containing 5A 2 2
MIRT705118 C4orf29 abhydrolase domain containing 18 2 2
MIRT706303 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT706610 CYB5B cytochrome b5 type B 2 2
MIRT706729 RFK riboflavin kinase 2 2
MIRT707321 TMEM184B transmembrane protein 184B 2 2
MIRT708652 LYRM7 LYR motif containing 7 2 2
MIRT710520 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT714283 KIF1C kinesin family member 1C 2 2
MIRT720438 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT720612 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT722756 SIRPB2 signal regulatory protein beta 2 2 2
MIRT723296 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT724380 NEK8 NIMA related kinase 8 2 2
MIRT725105 THRA thyroid hormone receptor, alpha 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3663 Platinum-based doublet chemotherapy sensitive High Lung Adenocarcinoma tissue
hsa-mir-3663 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-3663 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3663 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-mir-3663 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-3663 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3663-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-3663-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-3663-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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