pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol CITED2   
Synonyms ASD8, MRG-1, MRG1, P35SRJ, VSD2
Description Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2
Transcript NM_001168388   
Other Transcripts NM_001168389 , NM_006079   
Expression
Putative miRNA Targets on CITED2
3'UTR of CITED2
(miRNA target sites are highlighted)
>CITED2|NM_001168388|3'UTR
   1 CTCGATCGAAACCCCGGCGAAAGAAATCAAACCCCCAACTTCTTCGGCGTGAATTAAAAGAAACATTCCCTTAGACACAG
  81 TATCTCACTTTTCAGATCTTGAAAGGTTTGAGAACTTGGAAACAAAGTAAACTATAAACTTGTACAAATTGGTTTTAAAA
 161 AAAATTGCTGCCACTTTTTTTTCCTGTTTTTGTTTCGTTTTTGTAGCCTTGACATTCACCCACCTCCCTTATGTAGTTGA
 241 AATATCTAGCTAACTTGGTCTTTTTCGTTGTTTGTTTTTACTCCTTTCCCTCACTTTCTCCAGTGCTCAACTGTTAGATA
 321 TTAATCTTGGCAAACTGCTTAATCTTGTGGATTTTGTAGATGGTTTCAAATGACTGAACTGCATTCAGATTTACGAGTGA
 401 AAGGAAAAATTGCATTAGTTGGTTGCATGAACTTCGAAGGGCAGATATTACTGCACAAACTGCCATCTCGCTTCATTTTT
 481 TTAACTATGCATTTGAGTACAGACTAATTTTTAAAATATGCTAAACTGGAAGATTAAACAGATGTGGGCCAAACTGTTCT
 561 GGATCAGGAAAGTCATACTGTTCACTTTCAAGTTGGCTGTCCCCCCCGCCGCCCCCCCCACCCCCATATGTACAGATGAT
 641 AATAGGGTGTGGAATGTCGTCAGTGGCAAACATTTCACAGATTTTTATTTTGTTTCTGTCTTCAACATTTTTGACACTGT
 721 GCTAATAGTTATATTCAGTACATGAAAAGATACTACTGTGTTGAAAGCTTTTTAGGAAATTTTGACAGTATTTTTGTACA
 801 AAACATTTTTTTGAAAAAATACTTGTTAATTTATTCTATTTTAATTTGCCAATGTCAATAAAAAGTTAAGAAATAAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accaCGUUU-UC--AUU--AACACCAAAAa 5'
              |||||  |  |||  |||||| ||| 
Target 5' cttgGCAAACTGCTTAATCTTGTGGATTTt 3'
326 - 355 137.00 -8.30
2
miRNA  3' accaCGUUUUCAU-UAA-C-ACCAAaaa 5'
              | |||| |: ||| | |||||   
Target 5' aaagGAAAAATTGCATTAGTTGGTTgca 3'
400 - 427 121.00 -7.52
3
miRNA  3' accacguuuucauuaacaCCAAAaa 5'
                            |||||  
Target 5' acttttcagatcttgaaaGGTTTga 3'
87 - 111 100.00 -6.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30541717 4 COSMIC
COSN30146237 8 COSMIC
COSN31523524 31 COSMIC
COSN31516772 42 COSMIC
COSN31522642 56 COSMIC
COSN19695201 69 COSMIC
COSN26970799 89 COSMIC
COSN30146524 93 COSMIC
COSN31508176 93 COSMIC
COSN30462776 126 COSMIC
COSN25790056 129 COSMIC
COSN18730332 157 COSMIC
COSN28874661 174 COSMIC
COSN18730394 175 COSMIC
COSN31515267 180 COSMIC
COSN15609302 205 COSMIC
COSN30513323 234 COSMIC
COSN31596157 381 COSMIC
COSN22120588 477 COSMIC
COSN19397979 661 COSMIC
COSN20103443 682 COSMIC
COSN22339898 946 COSMIC
COSN8398804 1069 COSMIC
COSN27218865 1119 COSMIC
COSN14689820 1184 COSMIC
COSN22804315 1214 COSMIC
rs112007554 47 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs760240926 3 dbSNP
rs1338279196 4 dbSNP
rs1454981989 6 dbSNP
rs775105538 7 dbSNP
rs558888989 9 dbSNP
rs770234216 12 dbSNP
rs970196307 13 dbSNP
rs1470422776 14 dbSNP
rs759230102 15 dbSNP
rs1181454067 18 dbSNP
rs1398780602 19 dbSNP
rs773975179 23 dbSNP
rs1245147430 27 dbSNP
rs770779781 29 dbSNP
rs777898916 32 dbSNP
rs769990287 33 dbSNP
rs1394886234 34 dbSNP
rs1225964635 35 dbSNP
rs748296240 36 dbSNP
rs781350523 38 dbSNP
rs755093279 39 dbSNP
rs751842350 40 dbSNP
rs780257155 41 dbSNP
rs1433775459 42 dbSNP
rs371608085 44 dbSNP
rs1280397700 46 dbSNP
rs112007554 47 dbSNP
rs373695259 48 dbSNP
rs369037587 49 dbSNP
rs1334388675 57 dbSNP
rs1216166897 58 dbSNP
rs903638996 64 dbSNP
rs187566066 65 dbSNP
rs1470619331 68 dbSNP
rs907197671 79 dbSNP
rs745532716 80 dbSNP
rs1174452425 81 dbSNP
rs1469361917 82 dbSNP
rs1418311802 84 dbSNP
rs1005120152 93 dbSNP
rs184180192 96 dbSNP
rs1412727138 98 dbSNP
rs1462816004 99 dbSNP
rs566103695 108 dbSNP
rs1160544695 112 dbSNP
rs1391854734 119 dbSNP
rs1329648510 120 dbSNP
rs562937099 130 dbSNP
rs933883313 132 dbSNP
rs1287954779 138 dbSNP
rs532459432 141 dbSNP
rs1335987659 143 dbSNP
rs918496756 145 dbSNP
rs370467636 148 dbSNP
rs1037068771 152 dbSNP
rs565084844 153 dbSNP
rs1252068169 156 dbSNP
rs1049247017 157 dbSNP
rs941329545 162 dbSNP
rs1257766173 165 dbSNP
rs909992621 165 dbSNP
rs1244894886 166 dbSNP
rs1201626048 168 dbSNP
rs543290621 171 dbSNP
rs1462444370 172 dbSNP
rs898258790 173 dbSNP
rs1169505503 182 dbSNP
rs1284304426 183 dbSNP
rs970228906 183 dbSNP
rs917392372 184 dbSNP
rs1356307500 186 dbSNP
rs1039389542 188 dbSNP
rs942410297 189 dbSNP
rs1348078674 191 dbSNP
rs1311062604 197 dbSNP
rs1340190932 199 dbSNP
rs1228800287 204 dbSNP
rs1253592879 205 dbSNP
rs912222271 207 dbSNP
rs1051483756 215 dbSNP
rs945969113 217 dbSNP
rs913119770 219 dbSNP
rs956348272 221 dbSNP
rs1385355746 223 dbSNP
rs1032324268 224 dbSNP
rs138834617 225 dbSNP
rs1255221995 226 dbSNP
rs34965121 227 dbSNP
rs1195309686 229 dbSNP
rs967660570 231 dbSNP
rs1447780431 232 dbSNP
rs957160987 233 dbSNP
rs1376099822 234 dbSNP
rs1467789985 235 dbSNP
rs1022020029 239 dbSNP
rs1402027339 240 dbSNP
rs1006557187 246 dbSNP
rs889626279 250 dbSNP
rs1050978122 254 dbSNP
rs1228246134 257 dbSNP
rs998424430 257 dbSNP
rs1349330343 259 dbSNP
rs761994181 260 dbSNP
rs980172986 267 dbSNP
rs560871735 272 dbSNP
rs1486098982 274 dbSNP
rs1163980896 278 dbSNP
rs1245923941 281 dbSNP
rs560844165 283 dbSNP
rs542336292 288 dbSNP
rs1181713346 289 dbSNP
rs1460795467 290 dbSNP
rs1005268036 293 dbSNP
rs571673360 295 dbSNP
rs951008919 298 dbSNP
rs553360182 300 dbSNP
rs1028288111 303 dbSNP
rs995019195 310 dbSNP
rs1322991376 316 dbSNP
rs1217299296 317 dbSNP
rs1444991273 321 dbSNP
rs1435016610 325 dbSNP
rs900677246 326 dbSNP
rs1039463342 329 dbSNP
rs1216944309 331 dbSNP
rs1006583803 332 dbSNP
rs1300210465 335 dbSNP
rs1313329628 336 dbSNP
rs1240685581 343 dbSNP
rs1245949908 347 dbSNP
rs1266028950 349 dbSNP
rs917311439 357 dbSNP
rs1214319717 358 dbSNP
rs1254802696 364 dbSNP
rs1363252652 365 dbSNP
rs993047963 370 dbSNP
rs1290777439 373 dbSNP
rs956393039 374 dbSNP
rs1344619988 376 dbSNP
rs890817120 380 dbSNP
rs369754940 383 dbSNP
rs868045238 384 dbSNP
rs1352089556 387 dbSNP
rs913158082 403 dbSNP
rs1367259370 406 dbSNP
rs1292459126 419 dbSNP
rs1373357268 420 dbSNP
rs1411287914 421 dbSNP
rs1286070502 425 dbSNP
rs1328289818 427 dbSNP
rs1054776511 432 dbSNP
rs1131431 435 dbSNP
rs1275018582 436 dbSNP
rs776027476 440 dbSNP
rs559098499 442 dbSNP
rs1188131733 444 dbSNP
rs1474149542 447 dbSNP
rs1240965533 448 dbSNP
rs772535683 449 dbSNP
rs917291797 451 dbSNP
rs1184682967 454 dbSNP
rs920582732 455 dbSNP
rs1290113193 458 dbSNP
rs188737843 459 dbSNP
rs1472489586 461 dbSNP
rs1189131273 462 dbSNP
rs1416345540 463 dbSNP
rs1404112957 467 dbSNP
rs950737595 469 dbSNP
rs1431090905 471 dbSNP
rs998057171 475 dbSNP
rs1349462378 483 dbSNP
rs1414978276 488 dbSNP
rs1027945676 489 dbSNP
rs1285744957 491 dbSNP
rs995042743 494 dbSNP
rs1308376472 506 dbSNP
rs1298388282 508 dbSNP
rs1213271898 513 dbSNP
rs375206397 519 dbSNP
rs746334716 520 dbSNP
rs896951288 520 dbSNP
rs1361396684 521 dbSNP
rs7763870 523 dbSNP
rs1407050985 526 dbSNP
rs1363933639 531 dbSNP
rs1301139152 532 dbSNP
rs1457221918 533 dbSNP
rs1472014057 542 dbSNP
rs1255548940 547 dbSNP
rs1005432333 551 dbSNP
rs888454570 554 dbSNP
rs1450838956 556 dbSNP
rs1408104267 565 dbSNP
rs1166210515 567 dbSNP
rs1422351885 569 dbSNP
rs1369351948 571 dbSNP
rs1434950617 573 dbSNP
rs1335774971 576 dbSNP
rs548287840 579 dbSNP
rs1446987670 581 dbSNP
rs1481251555 588 dbSNP
rs890891171 589 dbSNP
rs1367301941 597 dbSNP
rs1226015879 601 dbSNP
rs1295509618 602 dbSNP
rs1341468484 606 dbSNP
rs1266335809 607 dbSNP
rs1044448599 608 dbSNP
rs1217518430 608 dbSNP
rs1441096798 608 dbSNP
rs1198163832 610 dbSNP
rs140357721 611 dbSNP
rs895933171 612 dbSNP
rs1057456129 613 dbSNP
rs1390489032 615 dbSNP
rs1253402317 617 dbSNP
rs1203081776 618 dbSNP
rs1307407137 619 dbSNP
rs201308258 620 dbSNP
rs934865403 620 dbSNP
rs975152433 620 dbSNP
rs1263900535 625 dbSNP
rs1269179258 626 dbSNP
rs1051254411 629 dbSNP
rs1207450272 635 dbSNP
rs182757442 641 dbSNP
rs1451711069 643 dbSNP
rs1200411688 645 dbSNP
rs566040307 647 dbSNP
rs978992296 649 dbSNP
rs1343650304 658 dbSNP
rs757504878 659 dbSNP
rs1158400299 666 dbSNP
rs1392132818 668 dbSNP
rs947676173 671 dbSNP
rs377226526 675 dbSNP
rs1436110753 677 dbSNP
rs531926900 681 dbSNP
rs398066321 687 dbSNP
rs4177 687 dbSNP
rs547817920 688 dbSNP
rs1331715013 692 dbSNP
rs1054406410 696 dbSNP
rs1176986301 701 dbSNP
rs753228985 702 dbSNP
rs1470675598 703 dbSNP
rs1426523710 704 dbSNP
rs1287135347 707 dbSNP
rs577856168 716 dbSNP
rs1182526433 720 dbSNP
rs756271304 722 dbSNP
rs1462114727 726 dbSNP
rs1471511143 728 dbSNP
rs190129101 732 dbSNP
rs1418248641 733 dbSNP
rs1161326498 737 dbSNP
rs1388736812 752 dbSNP
rs1175839177 753 dbSNP
rs753575199 753 dbSNP
rs1308903738 754 dbSNP
rs1457765210 756 dbSNP
rs1408178840 758 dbSNP
rs1288130548 773 dbSNP
rs1341374336 774 dbSNP
rs1244301703 775 dbSNP
rs905753574 776 dbSNP
rs976883819 777 dbSNP
rs961237332 781 dbSNP
rs1015401274 787 dbSNP
rs558034916 788 dbSNP
rs1005380362 789 dbSNP
rs1276104988 792 dbSNP
rs1481883720 803 dbSNP
rs1262544358 805 dbSNP
rs1203927913 806 dbSNP
rs1240082015 807 dbSNP
rs1425319380 817 dbSNP
rs1044262570 819 dbSNP
rs949830125 821 dbSNP
rs1221863440 822 dbSNP
rs75804913 836 dbSNP
rs1372421390 841 dbSNP
rs1428068203 843 dbSNP
rs1307649999 844 dbSNP
rs1337332063 849 dbSNP
rs767668624 852 dbSNP
rs929357580 853 dbSNP
rs1301725591 865 dbSNP
rs1454047747 871 dbSNP
rs1340432868 873 dbSNP
rs1012935515 877 dbSNP
rs920579665 877 dbSNP
rs1227302857 882 dbSNP
rs973653946 884 dbSNP
rs1484133552 890 dbSNP
rs1198545361 893 dbSNP
rs138505035 899 dbSNP
rs1156414118 906 dbSNP
rs562988999 907 dbSNP
rs1190359481 911 dbSNP
rs1392174788 911 dbSNP
rs1439490197 913 dbSNP
rs1017787411 919 dbSNP
rs987600738 920 dbSNP
rs531377022 923 dbSNP
rs1378393398 924 dbSNP
rs1186001385 927 dbSNP
rs1301484057 928 dbSNP
rs1323136504 929 dbSNP
rs1436475825 929 dbSNP
rs1460348920 929 dbSNP
rs1362459550 931 dbSNP
rs1433667318 933 dbSNP
rs955006891 934 dbSNP
rs1043245425 935 dbSNP
rs112837424 935 dbSNP
rs541537531 935 dbSNP
rs1010385118 938 dbSNP
rs1246092548 939 dbSNP
rs1186037067 941 dbSNP
rs932353100 941 dbSNP
rs1268087572 946 dbSNP
rs111635696 950 dbSNP
rs1205785290 952 dbSNP
rs976535102 953 dbSNP
rs1458086217 955 dbSNP
rs891491533 957 dbSNP
rs1032693270 967 dbSNP
rs961149145 968 dbSNP
rs1453610067 969 dbSNP
rs542273241 971 dbSNP
rs1486850504 972 dbSNP
rs185269854 977 dbSNP
rs1300149023 979 dbSNP
rs1350933949 981 dbSNP
rs1229968858 984 dbSNP
rs1265967080 984 dbSNP
rs983975688 984 dbSNP
rs1239628091 987 dbSNP
rs905782757 993 dbSNP
rs1266117223 995 dbSNP
rs144609884 1003 dbSNP
rs1013212348 1014 dbSNP
rs1268407146 1019 dbSNP
rs182524050 1020 dbSNP
rs200094410 1021 dbSNP
rs998865230 1022 dbSNP
rs1047830736 1031 dbSNP
rs140843980 1032 dbSNP
rs929367918 1033 dbSNP
rs1166103887 1038 dbSNP
rs1351171216 1040 dbSNP
rs920659645 1042 dbSNP
rs747661729 1051 dbSNP
rs1370822108 1057 dbSNP
rs776169065 1058 dbSNP
rs146453234 1059 dbSNP
rs1043109813 1063 dbSNP
rs1011714146 1064 dbSNP
rs1228891762 1068 dbSNP
rs1314758937 1069 dbSNP
rs889259503 1071 dbSNP
rs1050702190 1074 dbSNP
rs1291066372 1075 dbSNP
rs372371385 1077 dbSNP
rs1418678640 1078 dbSNP
rs1250148802 1079 dbSNP
rs1469935414 1083 dbSNP
rs1183000723 1087 dbSNP
rs1416549574 1102 dbSNP
rs77011150 1106 dbSNP
rs1162404319 1110 dbSNP
rs1165841591 1113 dbSNP
rs1431259876 1114 dbSNP
rs566592737 1116 dbSNP
rs939647252 1120 dbSNP
rs1448457746 1129 dbSNP
rs1304327742 1131 dbSNP
rs1337097290 1132 dbSNP
rs1483971416 1132 dbSNP
rs908318962 1132 dbSNP
rs764154326 1133 dbSNP
rs1230963581 1135 dbSNP
rs1271117883 1135 dbSNP
rs1430400826 1139 dbSNP
rs1211303295 1141 dbSNP
rs983851156 1142 dbSNP
rs1239530051 1144 dbSNP
rs1482570639 1145 dbSNP
rs1183447195 1148 dbSNP
rs150332365 1154 dbSNP
rs746653573 1156 dbSNP
rs1166384749 1166 dbSNP
rs1418316441 1169 dbSNP
rs552816419 1173 dbSNP
rs752561919 1173 dbSNP
rs779756370 1180 dbSNP
rs75467106 1184 dbSNP
rs1177980385 1187 dbSNP
rs759560059 1191 dbSNP
rs1321123992 1192 dbSNP
rs1451904262 1192 dbSNP
rs991332405 1193 dbSNP
rs1268450559 1194 dbSNP
rs565246043 1194 dbSNP
rs1353915319 1208 dbSNP
rs1264808175 1210 dbSNP
rs1228003807 1212 dbSNP
rs1327717819 1213 dbSNP
rs1292787515 1214 dbSNP
rs1399067810 1215 dbSNP
rs960270255 1222 dbSNP
rs1035594701 1223 dbSNP
rs1281173673 1223 dbSNP
rs1203653302 1224 dbSNP
rs1345742918 1231 dbSNP
rs1465896844 1233 dbSNP
rs998841908 1233 dbSNP
rs1186163910 1243 dbSNP
rs538682711 1248 dbSNP
rs1240950953 1253 dbSNP
rs1478152123 1258 dbSNP
rs571634281 1259 dbSNP
rs1192562678 1261 dbSNP
rs1422871149 1261 dbSNP
rs1173252720 1263 dbSNP
rs1021682720 1265 dbSNP
rs189885846 1271 dbSNP
rs745862675 1272 dbSNP
rs1455531821 1273 dbSNP
rs1316332668 1277 dbSNP
rs1325864116 1282 dbSNP
rs1304506251 1290 dbSNP
rs954927781 1291 dbSNP
rs1021530166 1296 dbSNP
rs1437541673 1297 dbSNP
rs988299914 1297 dbSNP
rs866304874 1298 dbSNP
rs1390401143 1299 dbSNP
rs956003407 1303 dbSNP
rs1269124106 1308 dbSNP
rs1431776856 1313 dbSNP
rs140532294 1317 dbSNP
rs766479097 1317 dbSNP
rs761509355 1320 dbSNP
rs1451659251 1326 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000367651.2 | 3UTR | UUUUAAAAAAAAUUGCUGCCACUUUUUUUUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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