pre-miRNA Information
pre-miRNA hsa-mir-6799   
Genomic Coordinates chr19: 49791866 - 49791934
Description Homo sapiens miR-6799 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6799-5p
Sequence 6| GGGGAGGUGUGCAGGGCUGG |25
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1439869964 1 dbSNP
rs1206286688 3 dbSNP
rs767550469 6 dbSNP
rs1471732220 9 dbSNP
rs986966775 11 dbSNP
rs754316096 12 dbSNP
rs757819623 15 dbSNP
rs1473089544 16 dbSNP
Putative Targets

Gene Information
Gene Symbol TOMM20   
Synonyms MAS20, MOM19, TOM20
Description translocase of outer mitochondrial membrane 20
Transcript NM_014765   
Expression
Putative miRNA Targets on TOMM20
3'UTR of TOMM20
(miRNA target sites are highlighted)
>TOMM20|NM_014765|3'UTR
   1 GAAACAAATGTCAACATAATAAAATCTCAGTTAAAAATATTTTAAAAATTCTTGGTAGTTGAGCAGCTCTGGGGGAATAA
  81 GGGCAAATATGCTTGTTATGAACTACACTGAAATCTACCAAAGTTAATGTTTACTTTGTGTAGATCCATTTGTCTATTTT
 161 ATTTATTTTTCCCAGTGAAAAGTGTATTTTGATAGAGAACTTTTCATTCTATAAATACACTATGAGTTACTAAAATATCA
 241 TGGATTTTGTTTATTCCTGAAACATAGTTACATAGTTAAACTGTACATATGACATGGCTTATGTTAAAAATACCCAGTGC
 321 TCAGTTTTGAAAGATAGGCAAAAAAAAAAAAGTATAGGAGAAACTGAAGAATGTACACTTTTTTAGAGGGCACATTTTGC
 401 TGTAAATCTGGAAATTTGATAGACTTGACTGTGTTTGTGAAAACTGAGCATTAAAGGTTTTGATTGATCCTTTCTTTCCA
 481 TTTAATCTCTGAGACGTAAATATGTGAGGTGTGCTGCTGTGCTGGGTTAACAGCTTCCTTCCCTTTCTGTGTAGCAGTCT
 561 TGAAATGTTCTGTTTAAATCAGTAGGCTTAATGTGTTCTGGGTATTTATCTCCTTGTATTTTAAATATATGTAGTTGCAA
 641 ATAGCACCAGGAATTAGATTTCTGTACACCCCTAATCTAGCCTTGTGAGCTTCGCTAGTTAATGTGTGCTCACTTTCCCT
 721 CCATTTGTTACGTGAGAGAATGCGTCTGCTGATCACTGAAGTGTCCCTTTTAGCTTCTGATTCATTGGGTTCTGTTGGGC
 801 ATCTTTAAATCCACCTTAACCTGAGGAATGTATGTGGGCAACCAGGCCCTGCATTTTTTTATATTCTGAATTTTGCATGC
 881 TTGCCTGACTTAGTATTTCTGAATTGATGTTTTTTTTAATGGTATAACTATCTTGATTTTCACTGAAATTATATGGTTCT
 961 GTCACTACTCTGTAAATTAATCCGAAACTTTTAAGGTAACTGGGATGATCTGCTTGTAAAAATGCTTGTTGCCTTTTGCT
1041 TTATCTTCAGTGTACCTCCTTAATCCTGCTTCAACTTGATTATCTTGTGAAACGATGAGAGTAAGTTGCAACCTTGTGAC
1121 TGAAAACTTGAAAAGAGTGGAGCAGGTGGGACCTCTTATTCTCAAATAGTGACATATTCTCCGTAGTCACAGTTTCAGAA
1201 CTGAGTAAGGATCCTTGGTACTTGGTGGCATCTGTTGAACTGAGGAGCATTTCTCATTGTAAAGATTGCCTTTGTTCTGT
1281 CTAAAAGTCTGGAGAAATCCCAAAGACTTTTCCTATGTACTAGGCATTTTATTTTGATTGACTTACAAACTCTTCTTAAT
1361 CATTATCAATCTCGGTTTTTTTGTGGTGCAGTGGAAGGAGAAATAGGTCTAGTTTCTGCCTCTGATTAGCCGCACAGCCT
1441 TGAACAAATCACATTTCATCTTTGAACTTACCTCTACTGTTAGACTAGGCGACTCACATTTGAGGACTTTTCTCGGGTAT
1521 CTTGAGGGTTTGTGATCCTGAACCCTTAAACAGTGCTTTTTTGTTACACAGGAGGGCTTTTTTGGGGGGATGACCAGTAC
1601 AGACATGCCAGTTAGTTTTACTAGTGGGATCCCAAATCCAAAGCAGTGTAGTGGTGATTGGTCAGTGACTAACCAGGCAG
1681 CTAAGAAGTCTTAGGCAGCAGCCCAGACATGTATAGAGGGGCAGTTAGAGGGAGAACAGGGGTGGGAAAGGGAGCAAGGG
1761 GCAGATAGCTCAGCAAGGAAAGAATGGGCTCAGAAAAAGGAGGGCTGGCTGGAGGAGTGAGGGGCAGCTTAAGTTTGGGG
1841 AGGGTAGAAACGCCGTTTCCTTGGGAACTGGAGTGCAGTATGAGCTGGGTGTCACTTGGCTCTGAACATACTGGCTTTGC
1921 TGTAATGCTTGAAAAGGCGTTGGTATCTTCATTTTACAGTTCATTAACCCAAGTACGTTTTCTTATTTAAATGACAACTT
2001 TGGTGCTTTAAAATGAGGTACCACTTTTTAAAGCTAGCTGTGTCGAGTTAAAGAAAAAATCAGCAGTTTTTTCTCCCAGA
2081 AATGTAATTGCCAAACACTATTCATCCCCATCTTAAGTTTTACAAGGTGATGTAATCAGCTTGTTGTAGTGATGCTGGCC
2161 AAATGGTGCTCAGCAGGTGAGAACAAAAAAACCCCAGATCTCAGTGAACTAATACACAGCTTGAGCGTTTCCATGTGCTA
2241 ATGTTGCACACTTACTAAAAAACTTTGGAAATGGAAAATAATGTATTAGTGCAACAGTTGATGTGCTTCTTTGGGCAAAG
2321 ATATAGTTTTGTTCCACAATTTGTACTTAAAAGCGAAAGAACATTGAAAACATAGACTTACTGGCTGTAGCAATGCTGGC
2401 CTGTTAACTGATAACTAGAACTTAGGTTCACGTTTATGTAAAGTGTGTAAAACCTAGTAGAGCTTGCATAGTCGGCACTC
2481 AGTAAATGTTTGGTTCCTTTTGCCCCTTGGTAAGTTTATTTTACCATCCTCCCACCTGCCATTCTGACTTTATTAAATCA
2561 ACATGTGGACCAGAGTGTTAATGAGATGTTATTGCAGAAGAGATTGAGAAAATTGGTATATCATGCAGATAACATACAAA
2641 ATCTTTTTGTAACGTAAAAAATGCAGTTTTATTATTGCTTGTGCCTCAACTGTTTAAGTGAATATTAAAGGGCTTGGAGA
2721 AAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggucGGGACGUGUGGAGGGg 5'
              ::| |:::||||||: 
Target 5' tatcTTCAGTGTACCTCCTt 3'
1042 - 1061 136.00 -15.20
2
miRNA  3' ggucgggACGUGUGGAGGGg 5'
                 ||| |||:|:|| 
Target 5' taatgtgTGCTCACTTTCCc 3'
700 - 719 125.00 -17.80
3
miRNA  3' ggucGGGACGUGUGGAGGGg 5'
              :||| | ||||| || 
Target 5' accaTCCT-CCCACCTGCCa 3'
2523 - 2541 123.00 -20.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1181185 2185 ClinVar
COSN23108236 44 COSMIC
COSN22304778 55 COSMIC
COSN31484890 66 COSMIC
COSN30150561 74 COSMIC
COSN1436517 98 COSMIC
COSN30451125 100 COSMIC
COSN31598344 146 COSMIC
COSN31552911 220 COSMIC
COSN31489949 224 COSMIC
COSN30158729 306 COSMIC
COSN5167086 319 COSMIC
COSN23987813 387 COSMIC
COSN26550212 429 COSMIC
COSN26668938 442 COSMIC
COSN16853611 470 COSMIC
COSN31584480 598 COSMIC
COSN29288695 616 COSMIC
COSN4748821 654 COSMIC
COSN27969372 674 COSMIC
COSN21238367 743 COSMIC
COSN28385857 801 COSMIC
COSN6027610 1063 COSMIC
COSN14603840 1394 COSMIC
COSN9062013 1411 COSMIC
COSN15784308 2211 COSMIC
COSN21501885 2334 COSMIC
COSN7208955 2377 COSMIC
COSN17492591 2494 COSMIC
COSN17218926 2628 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs763601222 5 dbSNP
rs1204811357 8 dbSNP
rs753633172 9 dbSNP
rs6913 12 dbSNP
rs901600866 14 dbSNP
rs1269716646 16 dbSNP
rs781569109 16 dbSNP
rs752406569 21 dbSNP
rs1281917517 30 dbSNP
rs1225829593 43 dbSNP
rs767074798 44 dbSNP
rs755212426 49 dbSNP
rs1441008346 52 dbSNP
rs1247763196 61 dbSNP
rs565611702 66 dbSNP
rs935503595 69 dbSNP
rs1412205166 83 dbSNP
rs1175289210 90 dbSNP
rs16849019 91 dbSNP
rs1359734244 92 dbSNP
rs1238347217 95 dbSNP
rs1202626817 102 dbSNP
rs562492167 105 dbSNP
rs1436125358 121 dbSNP
rs1300007154 131 dbSNP
rs1365592865 138 dbSNP
rs16849023 144 dbSNP
rs1218778062 147 dbSNP
rs1279417157 152 dbSNP
rs1314506345 154 dbSNP
rs1207360236 156 dbSNP
rs925422553 158 dbSNP
rs1465599563 163 dbSNP
rs1043866258 165 dbSNP
rs1257513217 172 dbSNP
rs1243431984 173 dbSNP
rs547093948 179 dbSNP
rs187054202 182 dbSNP
rs1282067958 184 dbSNP
rs113022632 197 dbSNP
rs1130651 209 dbSNP
rs918686229 211 dbSNP
rs764229032 232 dbSNP
rs1322279276 239 dbSNP
rs1348420738 240 dbSNP
rs1310162958 242 dbSNP
rs1130654 248 dbSNP
rs11543205 249 dbSNP
rs1377305008 257 dbSNP
rs972774841 258 dbSNP
rs1369755571 267 dbSNP
rs1288201420 272 dbSNP
rs1466904311 272 dbSNP
rs1330261644 273 dbSNP
rs962778483 279 dbSNP
rs1288163071 282 dbSNP
rs1244725933 284 dbSNP
rs1449559200 291 dbSNP
rs542913457 293 dbSNP
rs1220349101 299 dbSNP
rs112229945 302 dbSNP
rs1345049014 328 dbSNP
rs1157397586 329 dbSNP
rs1422125625 333 dbSNP
rs1380376499 335 dbSNP
rs531139622 338 dbSNP
rs1442372946 339 dbSNP
rs76065594 340 dbSNP
rs1257866375 346 dbSNP
rs1006037823 352 dbSNP
rs1208987413 352 dbSNP
rs141261852 352 dbSNP
rs796333919 352 dbSNP
rs563892202 354 dbSNP
rs1408014992 355 dbSNP
rs1307486759 359 dbSNP
rs1028881523 364 dbSNP
rs1230746385 366 dbSNP
rs997609855 369 dbSNP
rs901469602 373 dbSNP
rs182428867 374 dbSNP
rs1354373878 378 dbSNP
rs999266317 380 dbSNP
rs1250382631 381 dbSNP
rs1483368979 382 dbSNP
rs1183837708 385 dbSNP
rs762986921 393 dbSNP
rs1366530845 394 dbSNP
rs147471893 400 dbSNP
rs553454726 406 dbSNP
rs1164063925 409 dbSNP
rs1043896465 416 dbSNP
rs948213253 422 dbSNP
rs1320099110 427 dbSNP
rs1315117400 431 dbSNP
rs916832944 432 dbSNP
rs1332730651 435 dbSNP
rs1340259979 436 dbSNP
rs750330070 439 dbSNP
rs1449285096 451 dbSNP
rs1056697646 479 dbSNP
rs1361197745 489 dbSNP
rs543973880 491 dbSNP
rs918628627 493 dbSNP
rs757165494 495 dbSNP
rs574073182 496 dbSNP
rs188767535 498 dbSNP
rs1162326913 502 dbSNP
rs941447023 504 dbSNP
rs1441756089 506 dbSNP
rs909952446 515 dbSNP
rs1244716000 535 dbSNP
rs1447948155 544 dbSNP
rs1188114747 550 dbSNP
rs184330687 551 dbSNP
rs1369777265 554 dbSNP
rs1165017490 555 dbSNP
rs1427622476 567 dbSNP
rs953215274 586 dbSNP
rs1170877749 591 dbSNP
rs1402196735 604 dbSNP
rs1415513914 609 dbSNP
rs1339157677 610 dbSNP
rs1363407950 612 dbSNP
rs1195639211 614 dbSNP
rs1029327117 618 dbSNP
rs1488547053 627 dbSNP
rs975989846 630 dbSNP
rs1229052027 631 dbSNP
rs1326520873 631 dbSNP
rs1268130986 648 dbSNP
rs966348212 649 dbSNP
rs1030664504 651 dbSNP
rs999129623 657 dbSNP
rs1487555315 666 dbSNP
rs1463347855 668 dbSNP
rs143263486 670 dbSNP
rs1248939864 680 dbSNP
rs1430513269 684 dbSNP
rs1196895423 688 dbSNP
rs1377115110 690 dbSNP
rs1245792164 693 dbSNP
rs558055582 701 dbSNP
rs1021974371 710 dbSNP
rs1012849825 711 dbSNP
rs539211958 712 dbSNP
rs777923516 717 dbSNP
rs1259570724 731 dbSNP
rs565877699 732 dbSNP
rs1385306199 735 dbSNP
rs547081524 737 dbSNP
rs1057127387 743 dbSNP
rs939656860 744 dbSNP
rs897380630 757 dbSNP
rs1037061923 758 dbSNP
rs1326837435 759 dbSNP
rs941313251 773 dbSNP
rs1392251396 778 dbSNP
rs1208234255 779 dbSNP
rs1266797762 786 dbSNP
rs1293645205 787 dbSNP
rs758539736 806 dbSNP
rs1202243233 810 dbSNP
rs192269461 812 dbSNP
rs1472549148 820 dbSNP
rs1461152136 824 dbSNP
rs1365891886 825 dbSNP
rs1291392610 834 dbSNP
rs985502945 836 dbSNP
rs1404973661 839 dbSNP
rs1304422545 841 dbSNP
rs371097212 847 dbSNP
rs1227683652 849 dbSNP
rs921823131 851 dbSNP
rs535223678 853 dbSNP
rs976319335 860 dbSNP
rs1265024446 863 dbSNP
rs1428443369 864 dbSNP
rs1196649236 867 dbSNP
rs1224908608 870 dbSNP
rs1434906533 879 dbSNP
rs966012671 892 dbSNP
rs567699034 893 dbSNP
rs1253146250 896 dbSNP
rs1422366909 903 dbSNP
rs977743504 912 dbSNP
rs1210564395 917 dbSNP
rs1022005047 918 dbSNP
rs371260275 918 dbSNP
rs967665618 918 dbSNP
rs1480403448 925 dbSNP
rs1368105136 926 dbSNP
rs1409165857 930 dbSNP
rs1298609002 938 dbSNP
rs1375270342 941 dbSNP
rs558397088 943 dbSNP
rs1360486996 951 dbSNP
rs894884102 953 dbSNP
rs1319013867 963 dbSNP
rs1283116685 966 dbSNP
rs1205843027 968 dbSNP
rs1253540761 972 dbSNP
rs1231666348 974 dbSNP
rs1035217314 978 dbSNP
rs1181714988 982 dbSNP
rs188491958 983 dbSNP
rs1390346732 984 dbSNP
rs1185007443 993 dbSNP
rs1387785996 993 dbSNP
rs897422436 994 dbSNP
rs1037262957 996 dbSNP
rs1332967567 1003 dbSNP
rs941344208 1005 dbSNP
rs1302098016 1007 dbSNP
rs1383194642 1008 dbSNP
rs1454812770 1013 dbSNP
rs531355414 1014 dbSNP
rs888413542 1026 dbSNP
rs1364569173 1038 dbSNP
rs368822892 1043 dbSNP
rs376604992 1050 dbSNP
rs1311002321 1057 dbSNP
rs932793160 1058 dbSNP
rs922661485 1064 dbSNP
rs1462880527 1065 dbSNP
rs776952965 1067 dbSNP
rs1205188287 1073 dbSNP
rs374832949 1074 dbSNP
rs1186637461 1084 dbSNP
rs1420999992 1087 dbSNP
rs1175224298 1093 dbSNP
rs1467505182 1093 dbSNP
rs944509801 1094 dbSNP
rs1378159635 1099 dbSNP
rs923880605 1099 dbSNP
rs1199626465 1102 dbSNP
rs1431720394 1103 dbSNP
rs977941307 1104 dbSNP
rs1365524331 1105 dbSNP
rs967697951 1109 dbSNP
rs1284420214 1110 dbSNP
rs914944132 1115 dbSNP
rs1227013643 1127 dbSNP
rs1236491442 1135 dbSNP
rs184965590 1148 dbSNP
rs546112712 1150 dbSNP
rs1446117600 1162 dbSNP
rs990872135 1174 dbSNP
rs1458413825 1178 dbSNP
rs1278329734 1180 dbSNP
rs1199115718 1181 dbSNP
rs959179817 1182 dbSNP
rs1257101958 1183 dbSNP
rs1035151738 1192 dbSNP
rs1198623311 1202 dbSNP
rs1429979912 1206 dbSNP
rs1481376868 1207 dbSNP
rs1156739303 1211 dbSNP
rs1406909407 1213 dbSNP
rs1237634562 1224 dbSNP
rs1320455517 1227 dbSNP
rs1003732365 1229 dbSNP
rs961498767 1250 dbSNP
rs1015861135 1255 dbSNP
rs1005839509 1256 dbSNP
rs75431549 1257 dbSNP
rs560026321 1258 dbSNP
rs752663031 1265 dbSNP
rs192186043 1269 dbSNP
rs574213621 1270 dbSNP
rs1049775621 1274 dbSNP
rs562045243 1279 dbSNP
rs543425575 1283 dbSNP
rs1351799840 1293 dbSNP
rs1223999107 1296 dbSNP
rs1285848220 1302 dbSNP
rs1415993839 1305 dbSNP
rs1402747846 1314 dbSNP
rs901270123 1315 dbSNP
rs572063859 1322 dbSNP
rs1490835453 1324 dbSNP
rs1179869287 1327 dbSNP
rs944547872 1339 dbSNP
rs1385451423 1346 dbSNP
rs187893227 1352 dbSNP
rs755117791 1355 dbSNP
rs1411949373 1358 dbSNP
rs1424259566 1361 dbSNP
rs1160580416 1364 dbSNP
rs946658232 1366 dbSNP
rs553761637 1374 dbSNP
rs990511094 1375 dbSNP
rs959272033 1377 dbSNP
rs773069582 1387 dbSNP
rs1282751990 1392 dbSNP
rs927738638 1397 dbSNP
rs1237148098 1403 dbSNP
rs1360931049 1409 dbSNP
rs1202967466 1418 dbSNP
rs982234762 1421 dbSNP
rs1438294742 1424 dbSNP
rs557727904 1430 dbSNP
rs1015808811 1431 dbSNP
rs1444251008 1432 dbSNP
rs1184368955 1434 dbSNP
rs1387192616 1445 dbSNP
rs1427846024 1452 dbSNP
rs1444504068 1453 dbSNP
rs1397882654 1454 dbSNP
rs1412124816 1470 dbSNP
rs1332669604 1474 dbSNP
rs1405730819 1476 dbSNP
rs1257371990 1487 dbSNP
rs1451507188 1487 dbSNP
rs1384519603 1489 dbSNP
rs539761648 1490 dbSNP
rs1269075257 1498 dbSNP
rs1340056148 1514 dbSNP
rs1197425469 1515 dbSNP
rs571908810 1517 dbSNP
rs553581180 1518 dbSNP
rs1276250555 1519 dbSNP
rs1460673777 1528 dbSNP
rs952970452 1540 dbSNP
rs754115159 1544 dbSNP
rs1447851603 1549 dbSNP
rs1192646668 1552 dbSNP
rs138888733 1561 dbSNP
rs1287516573 1570 dbSNP
rs1171299627 1582 dbSNP
rs996876295 1583 dbSNP
rs567782966 1584 dbSNP
rs1339072893 1585 dbSNP
rs1355162230 1590 dbSNP
rs761070867 1600 dbSNP
rs901131472 1611 dbSNP
rs1449888701 1618 dbSNP
rs773708254 1621 dbSNP
rs998931631 1622 dbSNP
rs1281245934 1623 dbSNP
rs903275963 1629 dbSNP
rs1042229384 1634 dbSNP
rs1362398497 1637 dbSNP
rs1300070724 1640 dbSNP
rs1463756176 1642 dbSNP
rs1204711186 1660 dbSNP
rs1262516960 1674 dbSNP
rs1448765872 1684 dbSNP
rs1196822670 1685 dbSNP
rs1429255553 1685 dbSNP
rs1481049262 1687 dbSNP
rs1420385478 1695 dbSNP
rs946522479 1696 dbSNP
rs1451182208 1700 dbSNP
rs893739469 1702 dbSNP
rs1385079101 1708 dbSNP
rs1055410994 1714 dbSNP
rs183640863 1728 dbSNP
rs1344875591 1733 dbSNP
rs1405465040 1737 dbSNP
rs1473936521 1738 dbSNP
rs1238635719 1740 dbSNP
rs775547114 1740 dbSNP
rs1261587796 1742 dbSNP
rs549485417 1756 dbSNP
rs1208209757 1764 dbSNP
rs1268254937 1765 dbSNP
rs1490660638 1771 dbSNP
rs981770480 1775 dbSNP
rs1250105875 1778 dbSNP
rs1369380565 1781 dbSNP
rs1193460579 1785 dbSNP
rs1418813262 1785 dbSNP
rs1182953515 1789 dbSNP
rs1364056916 1791 dbSNP
rs1487567206 1792 dbSNP
rs767950617 1792 dbSNP
rs1266018423 1793 dbSNP
rs1455017681 1804 dbSNP
rs1161192035 1808 dbSNP
rs1364340571 1809 dbSNP
rs939776877 1816 dbSNP
rs1304830609 1817 dbSNP
rs908279536 1821 dbSNP
rs11543201 1822 dbSNP
rs952833544 1824 dbSNP
rs1337818937 1825 dbSNP
rs1028578999 1833 dbSNP
rs1291139206 1844 dbSNP
rs1360207813 1846 dbSNP
rs1225394697 1851 dbSNP
rs1250176503 1852 dbSNP
rs192507763 1854 dbSNP
rs965650830 1855 dbSNP
rs1253083446 1877 dbSNP
rs1465238730 1908 dbSNP
rs1356667726 1910 dbSNP
rs150701994 1911 dbSNP
rs1384100750 1912 dbSNP
rs1444771235 1921 dbSNP
rs1216604167 1928 dbSNP
rs1352762376 1943 dbSNP
rs1461411260 1944 dbSNP
rs1298548431 1947 dbSNP
rs1398281872 1948 dbSNP
rs574852320 1952 dbSNP
rs769366485 1958 dbSNP
rs998797733 1970 dbSNP
rs1298746321 1976 dbSNP
rs1404319287 1977 dbSNP
rs1349367231 1988 dbSNP
rs551775111 2003 dbSNP
rs1021638953 2006 dbSNP
rs188050520 2014 dbSNP
rs370242903 2017 dbSNP
rs1391753355 2020 dbSNP
rs1201407594 2023 dbSNP
rs1242192666 2028 dbSNP
rs182975542 2040 dbSNP
rs548044156 2044 dbSNP
rs1477050813 2050 dbSNP
rs1174368044 2066 dbSNP
rs1426343363 2067 dbSNP
rs1195024341 2073 dbSNP
rs1427856018 2073 dbSNP
rs529525341 2075 dbSNP
rs906430772 2076 dbSNP
rs115131468 2077 dbSNP
rs1454769081 2078 dbSNP
rs745485254 2091 dbSNP
rs776385456 2094 dbSNP
rs1361277854 2096 dbSNP
rs746394263 2097 dbSNP
rs114130203 2100 dbSNP
rs1378126429 2108 dbSNP
rs1223355594 2110 dbSNP
rs543907738 2112 dbSNP
rs1211717035 2115 dbSNP
rs754583978 2122 dbSNP
rs1485231743 2126 dbSNP
rs1186574129 2127 dbSNP
rs1265297679 2132 dbSNP
rs966039750 2143 dbSNP
rs1429660516 2148 dbSNP
rs746859174 2148 dbSNP
rs977409754 2159 dbSNP
rs1198143779 2162 dbSNP
rs1218542804 2165 dbSNP
rs967309800 2170 dbSNP
rs1365465927 2172 dbSNP
rs1290708951 2181 dbSNP
rs7930 2185 dbSNP
rs1011650628 2192 dbSNP
rs1284334636 2192 dbSNP
rs1326052197 2192 dbSNP
rs894556250 2197 dbSNP
rs1315928567 2199 dbSNP
rs11301 2200 dbSNP
rs1287522740 2202 dbSNP
rs1489842719 2215 dbSNP
rs1198514148 2217 dbSNP
rs1330952628 2225 dbSNP
rs545759926 2226 dbSNP
rs572045620 2227 dbSNP
rs1175239906 2232 dbSNP
rs190741074 2240 dbSNP
rs541598581 2247 dbSNP
rs1423719051 2250 dbSNP
rs141996601 2254 dbSNP
rs1478076384 2258 dbSNP
rs113668892 2262 dbSNP
rs778812449 2263 dbSNP
rs886742329 2264 dbSNP
rs1176391289 2282 dbSNP
rs771364160 2283 dbSNP
rs1458845499 2289 dbSNP
rs1372231265 2298 dbSNP
rs1258443512 2301 dbSNP
rs1287546087 2303 dbSNP
rs555943435 2318 dbSNP
rs1209192137 2323 dbSNP
rs755137572 2324 dbSNP
rs1280658283 2326 dbSNP
rs1221682558 2339 dbSNP
rs1453220204 2343 dbSNP
rs1220964697 2354 dbSNP
rs1371805607 2355 dbSNP
rs1232036811 2363 dbSNP
rs921006257 2375 dbSNP
rs931096102 2375 dbSNP
rs148159443 2378 dbSNP
rs1383486007 2381 dbSNP
rs1444138071 2382 dbSNP
rs749590403 2386 dbSNP
rs185599226 2395 dbSNP
rs558551014 2415 dbSNP
rs753979994 2419 dbSNP
rs1299058948 2423 dbSNP
rs1199074250 2431 dbSNP
rs540121701 2432 dbSNP
rs1355412245 2435 dbSNP
rs912815515 2436 dbSNP
rs1310929197 2446 dbSNP
rs1380090945 2473 dbSNP
rs977607662 2474 dbSNP
rs183335513 2487 dbSNP
rs1358400581 2488 dbSNP
rs914613711 2490 dbSNP
rs1272067536 2497 dbSNP
rs1438137882 2502 dbSNP
rs1241577650 2506 dbSNP
rs373161678 2510 dbSNP
rs1379118853 2512 dbSNP
rs990148017 2518 dbSNP
rs11543206 2528 dbSNP
rs1156358384 2529 dbSNP
rs566340429 2531 dbSNP
rs1370206006 2541 dbSNP
rs1474715594 2545 dbSNP
rs1238441647 2550 dbSNP
rs1181003446 2552 dbSNP
rs959071216 2555 dbSNP
rs548114663 2563 dbSNP
rs1239049744 2581 dbSNP
rs1467553062 2588 dbSNP
rs1034411280 2592 dbSNP
rs1403527863 2601 dbSNP
rs1451391721 2607 dbSNP
rs1352953734 2614 dbSNP
rs766658550 2615 dbSNP
rs1002466141 2622 dbSNP
rs970547723 2637 dbSNP
rs529470175 2642 dbSNP
rs1220310232 2643 dbSNP
rs756338007 2653 dbSNP
rs190625529 2654 dbSNP
rs1323106509 2658 dbSNP
rs1004168702 2662 dbSNP
rs1258389036 2664 dbSNP
rs767897527 2669 dbSNP
rs1377425801 2672 dbSNP
rs1305001947 2677 dbSNP
rs868580936 2689 dbSNP
rs1243237962 2696 dbSNP
rs1479084759 2703 dbSNP
rs1360475495 2704 dbSNP
rs1174748894 2719 dbSNP
rs1295771492 2721 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggucgggacguguGGAGGGg 5'
                       |||||| 
Target 5' uuuauuuuaccauCCUCCCa 3'
1 - 20
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000366607.4 | 3UTR | UUUAUUUUACCAUCCUCCCACCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
495 hsa-miR-6799-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057844 SLC30A7 solute carrier family 30 member 7 2 2
MIRT180622 CRY2 cryptochrome circadian clock 2 2 2
MIRT254627 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT294657 ZNF548 zinc finger protein 548 2 2
MIRT386443 CCL22 C-C motif chemokine ligand 22 2 2
MIRT441466 BEST3 bestrophin 3 2 2
MIRT446753 ZNF491 zinc finger protein 491 2 2
MIRT449226 RAD51B RAD51 paralog B 2 2
MIRT451096 ZNF584 zinc finger protein 584 2 2
MIRT451563 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451685 C1RL complement C1r subcomponent like 2 2
MIRT451739 CES3 carboxylesterase 3 2 2
MIRT451761 ZNF611 zinc finger protein 611 2 6
MIRT452415 QDPR quinoid dihydropteridine reductase 2 2
MIRT452566 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452860 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452925 DISC1 disrupted in schizophrenia 1 2 2
MIRT453051 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453102 HOXC4 homeobox C4 2 2
MIRT453256 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453299 ZNF394 zinc finger protein 394 2 2
MIRT453474 PITPNM3 PITPNM family member 3 2 2
MIRT453542 PRR12 proline rich 12 2 2
MIRT453597 ZNF557 zinc finger protein 557 2 2
MIRT453798 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453939 XRCC6 X-ray repair cross complementing 6 2 6
MIRT453990 CECR1 adenosine deaminase 2 2 2
MIRT454087 TMEM209 transmembrane protein 209 2 2
MIRT454658 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454756 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT454846 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT455122 TBC1D25 TBC1 domain family member 25 2 2
MIRT455164 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455312 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456472 SERAC1 serine active site containing 1 2 2
MIRT456555 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456640 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456721 TMEM239 transmembrane protein 239 2 4
MIRT457155 MXRA7 matrix remodeling associated 7 2 2
MIRT457489 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457689 ZNF587 zinc finger protein 587 2 2
MIRT457787 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT458001 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458133 TLCD2 TLC domain containing 2 2 2
MIRT458494 MARVELD2 MARVEL domain containing 2 2 2
MIRT458929 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459029 ZNF490 zinc finger protein 490 2 4
MIRT459121 FADS6 fatty acid desaturase 6 2 2
MIRT459319 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459363 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459418 FAM83B family with sequence similarity 83 member B 2 2
MIRT459980 RFT1 RFT1 homolog 2 2
MIRT460139 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460208 FGFR4 fibroblast growth factor receptor 4 2 2
MIRT460443 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460484 FAM105A family with sequence similarity 105 member A 2 6
MIRT460589 FEM1A fem-1 homolog A 2 2
MIRT460647 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460924 NOA1 nitric oxide associated 1 2 4
MIRT461077 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461161 SLC11A2 solute carrier family 11 member 2 2 6
MIRT461456 SLC19A3 solute carrier family 19 member 3 2 6
MIRT461570 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT461594 DPH2 DPH2 homolog 2 2
MIRT461858 ZNF317 zinc finger protein 317 2 2
MIRT461950 C3 complement C3 2 4
MIRT462182 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462449 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT462769 ZNF8 zinc finger protein 8 2 2
MIRT463134 ZNF451 zinc finger protein 451 2 8
MIRT463856 WNT7B Wnt family member 7B 2 2
MIRT463984 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT464254 VCL vinculin 2 2
MIRT464315 UST uronyl 2-sulfotransferase 2 2
MIRT464416 UNC13A unc-13 homolog A 2 6
MIRT464820 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465465 TOR2A torsin family 2 member A 2 2
MIRT466079 TMEM184C transmembrane protein 184C 2 2
MIRT466522 TBXA2R thromboxane A2 receptor 2 2
MIRT467005 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467076 SRRD SRR1 domain containing 2 2
MIRT468573 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT469559 RARA retinoic acid receptor alpha 2 2
MIRT469745 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470769 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470881 PLXND1 plexin D1 2 2
MIRT470981 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471221 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471251 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471301 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471470 PDE7B phosphodiesterase 7B 2 2
MIRT471769 NUP43 nucleoporin 43 2 4
MIRT471824 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472816 MTMR10 myotubularin related protein 10 2 6
MIRT473071 MORN4 MORN repeat containing 4 2 2
MIRT473493 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT473509 MAZ MYC associated zinc finger protein 2 2
MIRT473570 MAT2A methionine adenosyltransferase 2A 2 6
MIRT473995 LRRC20 leucine rich repeat containing 20 2 2
MIRT474532 KLHDC8A kelch domain containing 8A 2 2
MIRT474996 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475368 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT475750 HDLBP high density lipoprotein binding protein 2 2
MIRT476796 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477072 FAM208A family with sequence similarity 208 member A 2 6
MIRT477302 EPHB2 EPH receptor B2 2 2
MIRT477947 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478288 DDX19A DEAD-box helicase 19A 2 4
MIRT478314 DDN dendrin 2 2
MIRT478475 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478626 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478839 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479011 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479169 CLSPN claspin 2 2
MIRT479519 CDCA4 cell division cycle associated 4 2 2
MIRT481379 ATG12 autophagy related 12 2 2
MIRT481731 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482387 AEN apoptosis enhancing nuclease 2 2
MIRT482455 ADAR adenosine deaminase, RNA specific 2 4
MIRT483024 KHSRP KH-type splicing regulatory protein 2 4
MIRT483805 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT484338 EPN1 epsin 1 2 4
MIRT486088 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486307 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486651 ZNF28 zinc finger protein 28 2 2
MIRT486887 TSPYL4 TSPY like 4 2 2
MIRT487127 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487548 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487677 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489255 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489279 RBM8A RNA binding motif protein 8A 2 8
MIRT489399 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489502 CRLF3 cytokine receptor like factor 3 2 4
MIRT489695 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT489775 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489919 RTKN rhotekin 2 2
MIRT490174 TMEM63C transmembrane protein 63C 2 2
MIRT490523 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT491202 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491261 DHX40 DEAH-box helicase 40 2 2
MIRT491390 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491550 YAE1D1 Yae1 domain containing 1 2 2
MIRT492724 PHF12 PHD finger protein 12 2 2
MIRT493873 FAM73B mitoguardin 2 2 4
MIRT493891 FAM43A family with sequence similarity 43 member A 2 4
MIRT494464 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT498589 KRT8 keratin 8 2 2
MIRT498728 SNTN sentan, cilia apical structure protein 2 6
MIRT499984 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT501424 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT503419 SLC25A45 solute carrier family 25 member 45 2 6
MIRT504303 ZNF280B zinc finger protein 280B 2 2
MIRT507978 BCL2L13 BCL2 like 13 2 4
MIRT508891 METTL14 methyltransferase like 14 2 2
MIRT509629 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510109 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510140 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510306 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510625 TMEM167A transmembrane protein 167A 2 4
MIRT511022 NRF1 nuclear respiratory factor 1 2 2
MIRT512225 ATXN3 ataxin 3 2 8
MIRT514345 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515018 SUMF2 sulfatase modifying factor 2 2 2
MIRT515136 ZNF799 zinc finger protein 799 2 4
MIRT515251 DUSP28 dual specificity phosphatase 28 2 2
MIRT516209 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516672 ZNF860 zinc finger protein 860 2 4
MIRT516969 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT518379 ZNF250 zinc finger protein 250 2 2
MIRT518939 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519681 ZNF70 zinc finger protein 70 2 2
MIRT519910 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT519949 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520325 UBXN2A UBX domain protein 2A 2 2
MIRT520614 TMEM41B transmembrane protein 41B 2 2
MIRT520667 TMEM11 transmembrane protein 11 2 2
MIRT520857 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521447 RAD51 RAD51 recombinase 2 2
MIRT521562 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT522335 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522913 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523678 FOPNL FGFR1OP N-terminal like 2 2
MIRT523721 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523873 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524054 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524176 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524857 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT524933 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT525684 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT526834 PHC1 polyhomeotic homolog 1 2 2
MIRT540684 BMP3 bone morphogenetic protein 3 2 2
MIRT541759 KLF8 Kruppel like factor 8 2 2
MIRT550715 PMPCA peptidase, mitochondrial processing alpha subunit 2 6
MIRT561754 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562826 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562906 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564456 SLC35E2 solute carrier family 35 member E2 2 5
MIRT565231 TRAF6 TNF receptor associated factor 6 2 2
MIRT569117 ONECUT3 one cut homeobox 3 2 2
MIRT569229 SUSD1 sushi domain containing 1 2 2
MIRT569521 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570280 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570851 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571319 TPCN2 two pore segment channel 2 2 2
MIRT572081 EXOC8 exocyst complex component 8 2 2
MIRT572123 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573489 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573655 HES6 hes family bHLH transcription factor 6 2 2
MIRT574348 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576505 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608044 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT609312 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT613665 KIAA1210 KIAA1210 2 2
MIRT615639 ATF6 activating transcription factor 6 2 2
MIRT618578 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618866 MBL2 mannose binding lectin 2 2 2
MIRT618966 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619177 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620303 AQP6 aquaporin 6 2 2
MIRT620688 RFTN2 raftlin family member 2 2 2
MIRT621643 UBXN2B UBX domain protein 2B 2 2
MIRT622001 STK4 serine/threonine kinase 4 2 2
MIRT622426 NUDT19 nudix hydrolase 19 2 2
MIRT622577 PRRG4 proline rich and Gla domain 4 2 2
MIRT622808 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624790 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624972 ZNF665 zinc finger protein 665 2 4
MIRT625483 SMAD9 SMAD family member 9 2 2
MIRT626601 ACAA2 acetyl-CoA acyltransferase 2 2 2
MIRT626713 TRIM65 tripartite motif containing 65 2 2
MIRT626979 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627491 STRIP2 striatin interacting protein 2 2 2
MIRT628508 ZNF878 zinc finger protein 878 2 2
MIRT628538 ZNF701 zinc finger protein 701 2 2
MIRT628595 TMEM251 transmembrane protein 251 2 2
MIRT628822 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628901 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628963 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629013 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629064 KIF1C kinesin family member 1C 2 2
MIRT629194 PAPOLA poly(A) polymerase alpha 2 2
MIRT629350 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629452 WIZ widely interspaced zinc finger motifs 2 2
MIRT629700 XKR4 XK related 4 2 2
MIRT629742 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629901 SPATA5 spermatogenesis associated 5 2 2
MIRT629958 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630028 MTL5 testis expressed metallothionein like protein 2 2
MIRT630394 MYH9 myosin heavy chain 9 2 4
MIRT631137 SYNJ2 synaptojanin 2 2 2
MIRT631388 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631475 KLHL21 kelch like family member 21 2 2
MIRT631563 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631620 PCDHB11 protocadherin beta 11 2 2
MIRT631939 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632450 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632660 NAV1 neuron navigator 1 2 2
MIRT632745 MED28 mediator complex subunit 28 2 2
MIRT632835 IGF1 insulin like growth factor 1 2 2
MIRT632914 FRRS1 ferric chelate reductase 1 2 2
MIRT633034 DNAL1 dynein axonemal light chain 1 2 2
MIRT633385 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633445 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633868 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT633913 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT633955 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634047 NUP155 nucleoporin 155 2 2
MIRT634271 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634378 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634440 PDE7A phosphodiesterase 7A 2 2
MIRT634577 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT634701 DSEL dermatan sulfate epimerase-like 2 2
MIRT634773 CD3D CD3d molecule 2 2
MIRT635029 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT636075 ZNF280C zinc finger protein 280C 2 2
MIRT636705 ARSK arylsulfatase family member K 2 2
MIRT637444 ZNF324B zinc finger protein 324B 2 2
MIRT637587 PLD6 phospholipase D family member 6 2 2
MIRT637677 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT638358 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638601 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638828 CRTAP cartilage associated protein 2 2
MIRT638882 CEP97 centrosomal protein 97 2 4
MIRT639659 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640264 FANCA Fanconi anemia complementation group A 2 2
MIRT644998 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645064 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646954 UPK3BL uroplakin 3B like 1 2 2
MIRT648304 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649048 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649890 SLFN12L schlafen family member 12 like 2 2
MIRT650201 DOCK7 dedicator of cytokinesis 7 2 2
MIRT652051 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT654794 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655926 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT657717 GPC4 glypican 4 2 2
MIRT659306 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659848 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT661312 CPM carboxypeptidase M 2 2
MIRT661480 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661911 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT661978 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 4
MIRT662071 ZNF284 zinc finger protein 284 2 2
MIRT662497 ANGPT4 angiopoietin 4 2 2
MIRT662666 LRRC47 leucine rich repeat containing 47 2 2
MIRT663171 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663382 ZNF770 zinc finger protein 770 2 4
MIRT663997 WDR75 WD repeat domain 75 2 2
MIRT664164 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT664494 POLR3K RNA polymerase III subunit K 2 2
MIRT665062 CCDC77 coiled-coil domain containing 77 2 2
MIRT665085 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665722 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665927 TBC1D19 TBC1 domain family member 19 2 4
MIRT666094 SSR1 signal sequence receptor subunit 1 2 2
MIRT666847 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667387 MOB1B MOB kinase activator 1B 2 2
MIRT667580 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667901 ING1 inhibitor of growth family member 1 2 2
MIRT667982 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668202 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668283 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668389 FAT3 FAT atypical cadherin 3 2 2
MIRT669002 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669456 ATL3 atlastin GTPase 3 2 2
MIRT669489 ARL4C ADP ribosylation factor like GTPase 4C 2 2
MIRT669664 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669894 KIAA0754 KIAA0754 2 4
MIRT669980 SSR3 signal sequence receptor subunit 3 2 2
MIRT670157 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670242 TRIM13 tripartite motif containing 13 2 2
MIRT670279 CBY3 chibby family member 3 2 2
MIRT670360 ULBP3 UL16 binding protein 3 2 4
MIRT670632 BVES blood vessel epicardial substance 2 2
MIRT670736 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670775 TRIM66 tripartite motif containing 66 2 2
MIRT670918 DESI1 desumoylating isopeptidase 1 2 2
MIRT671221 CLSTN1 calsyntenin 1 2 2
MIRT671370 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT671403 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671433 TOX4 TOX high mobility group box family member 4 2 2
MIRT671658 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT672040 SMTNL2 smoothelin like 2 2 2
MIRT672142 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672403 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672577 RNF24 ring finger protein 24 2 2
MIRT672798 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673204 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673377 ZNF124 zinc finger protein 124 2 2
MIRT673501 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673858 CAPN7 calpain 7 2 2
MIRT673932 ZNF500 zinc finger protein 500 2 2
MIRT673987 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674087 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674129 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674303 THAP5 THAP domain containing 5 2 2
MIRT674375 POLR3D RNA polymerase III subunit D 2 2
MIRT674647 NKRF NFKB repressing factor 2 2
MIRT674668 PLCE1 phospholipase C epsilon 1 2 2
MIRT674784 NPR1 natriuretic peptide receptor 1 2 2
MIRT674898 RASSF9 Ras association domain family member 9 2 2
MIRT675022 SNX1 sorting nexin 1 2 2
MIRT675347 KLHL26 kelch like family member 26 2 2
MIRT675421 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675502 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675742 AHR aryl hydrocarbon receptor 2 2
MIRT675866 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675996 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676218 TMEM91 transmembrane protein 91 2 2
MIRT677304 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677835 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT677873 ABI2 abl interactor 2 2 2
MIRT677971 ITGB3 integrin subunit beta 3 2 2
MIRT678181 CRCP CGRP receptor component 2 2
MIRT678279 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679466 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679518 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679918 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680035 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680251 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680284 AKIP1 A-kinase interacting protein 1 2 2
MIRT680504 PRIM2 DNA primase subunit 2 2 2
MIRT680634 KIAA1456 KIAA1456 2 2
MIRT680824 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680876 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT681003 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681045 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681125 INTS7 integrator complex subunit 7 2 2
MIRT681163 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681225 DUSP19 dual specificity phosphatase 19 2 2
MIRT681308 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681345 BRI3BP BRI3 binding protein 2 2
MIRT681612 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681782 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT682088 ITGA3 integrin subunit alpha 3 2 4
MIRT682141 SMS spermine synthase 2 2
MIRT682167 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682224 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682347 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT682371 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682540 EXOSC2 exosome component 2 2 2
MIRT682625 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683546 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT683647 ZNF695 zinc finger protein 695 2 2
MIRT684446 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684860 ZNF749 zinc finger protein 749 2 2
MIRT684960 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685051 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685099 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685814 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685915 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686669 TMEM120B transmembrane protein 120B 2 2
MIRT686865 SLC25A32 solute carrier family 25 member 32 2 2
MIRT686959 SFT2D2 SFT2 domain containing 2 2 2
MIRT687122 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687743 KIAA1328 KIAA1328 2 2
MIRT688066 GLUL glutamate-ammonia ligase 2 2
MIRT688773 CDH7 cadherin 7 2 2
MIRT689688 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689743 PRR13 proline rich 13 2 2
MIRT689939 MANSC1 MANSC domain containing 1 2 2
MIRT690096 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690194 C5orf45 MRN complex interacting protein 2 2
MIRT690252 CAMLG calcium modulating ligand 2 2
MIRT690423 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT691115 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691235 DFNB59 pejvakin 2 2
MIRT691302 ZNF681 zinc finger protein 681 2 2
MIRT691371 GP5 glycoprotein V platelet 2 2
MIRT691806 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692150 CEP104 centrosomal protein 104 2 2
MIRT692351 AGTRAP angiotensin II receptor associated protein 2 2
MIRT692579 NCMAP non-compact myelin associated protein 2 2
MIRT692653 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692749 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693098 SCNM1 sodium channel modifier 1 2 2
MIRT693300 SYTL3 synaptotagmin like 3 2 2
MIRT693393 ZNF460 zinc finger protein 460 2 2
MIRT693491 MOB3A MOB kinase activator 3A 2 2
MIRT693538 ZNF708 zinc finger protein 708 2 2
MIRT693566 PIGR polymeric immunoglobulin receptor 2 2
MIRT694378 MTA1 metastasis associated 1 2 2
MIRT694493 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694738 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT695076 ZNF17 zinc finger protein 17 2 2
MIRT695402 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695460 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695727 ZNF117 zinc finger protein 117 2 2
MIRT695902 MED16 mediator complex subunit 16 2 2
MIRT696266 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696567 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696649 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696795 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696825 PLLP plasmolipin 2 2
MIRT696969 CCDC80 coiled-coil domain containing 80 2 2
MIRT697089 GPKOW G-patch domain and KOW motifs 2 2
MIRT697167 INMT indolethylamine N-methyltransferase 2 2
MIRT697210 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697336 ZNF641 zinc finger protein 641 2 2
MIRT697586 YME1L1 YME1 like 1 ATPase 2 2
MIRT698623 TES testin LIM domain protein 2 2
MIRT698954 SPAST spastin 2 2
MIRT699088 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699436 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699558 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700330 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700362 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700463 PURB purine rich element binding protein B 2 2
MIRT701684 MYADM myeloid associated differentiation marker 2 2
MIRT701762 MSL2 MSL complex subunit 2 2 2
MIRT703183 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703210 GOLGA3 golgin A3 2 2
MIRT703366 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703430 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703606 FBXO45 F-box protein 45 2 2
MIRT703705 FAM134A reticulophagy regulator family member 2 2 2
MIRT703815 EVI5 ecotropic viral integration site 5 2 2
MIRT703919 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704239 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704650 CLCC1 chloride channel CLIC like 1 2 2
MIRT705165 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705535 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705665 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706148 ZNF674 zinc finger protein 674 2 2
MIRT706477 SNX27 sorting nexin family member 27 2 2
MIRT706646 SMIM19 small integral membrane protein 19 2 2
MIRT708259 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708842 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710442 BTNL3 butyrophilin like 3 2 2
MIRT711331 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT712438 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT714990 TSPAN11 tetraspanin 11 2 2
MIRT717405 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT722229 ZNF503 zinc finger protein 503 2 2
MIRT725389 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6799-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6799-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6799-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6799-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6799-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-6799-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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