pre-miRNA Information
pre-miRNA hsa-mir-106a   
Genomic Coordinates chrX: 134170198 - 134170278
Description Homo sapiens miR-106a stem-loop
Comment This miRNA was not cloned in reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-106a-3p
Sequence 50| CUGCAAUGUAAGCACUUCUUAC |71
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs927823355 6 dbSNP
rs1448271699 8 dbSNP
rs1477844174 12 dbSNP
rs1358970494 18 dbSNP
rs781747706 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BN3X2A miR-106a Predictive Biomarker (PRD) Clinical/Experimental Data Expression Decrease Tumor tissue Quantitative real-time PCR
Gene Information
Gene Symbol CHML   
Synonyms REP2
Description CHM like, Rab escort protein 2
Transcript NM_001821   
Expression
Putative miRNA Targets on CHML
3'UTR of CHML
(miRNA target sites are highlighted)
>CHML|NM_001821|3'UTR
   1 AAAAGAGCAATCTCGAAATGCTGTTTTGGACCTCCTTCATGGCATCAGAATTTTCTCATTTAAAGGACAGTTTCCCATAT
  81 GAGTAATTAGAAGTGGTTATATATGATGAATGCTATGCAGATGTTGTCTTTAACTCTCAGACATTCAGCATTGAATATCT
 161 TTGTTAACCTATCAATGAGTGATTTATTGATTATTGAACATTTTGTTTAGAATGGGCTATATGACCCAGAATCTTAAAAC
 241 AGAGTTAGCTTTATTTTAGTATTGGGTATATATGTAAGGGTTCCATATTAGCAACTCAGCTTAAAGGTAATGTATTTGCT
 321 AATGATCTTCAGATTTTATCTTTGTCTACAGAACAATTAGTAATACCCAAGTAATATTTTAATTACTTTTGCAGCTGTTA
 401 CAGTTGCTGCGGCCTGTTCGAATAGTGAAACATACACAAATGGTAAATTATGTGGATCTTTTGCATATAATATAAATGTA
 481 TAGACATGGTGGTAGGAATAGCAACTAATACAAATGCCAATATGATAATAAAATACATTTGTCTATAATCGTTTAAAGAT
 561 TAGCTTTGCATGATCCTTTATGCACTGTGAAGGTCTGAAGTTTATAATACTCACTTGACCCTTGTAACTGATGAGGCAAT
 641 GATGCCACCACAGTATTCTAATTTACAAAAAGAATTGGAGTTCAATTAGTGGTTGTAAAGCTCATTTTGGGGAGGTTGAT
 721 TGCAAAGGAAATTTGAAAGATAAGATTTATTCTTATTTAATACTTCAGAAAATTTCTGCAGAGCCCTGCCCTGGCACTTA
 801 AAATAGCTTCCAATAAGTAACTTAGACCAAAAGGAAAAATGAAGTGCCCCAGGAGAAGATACTTCAGAAGGGCTGTTCTG
 881 AAATTCCTAAGGAGGAATTCTTAGGAATTCCTAAGGAGAAACAGAGTGAGGCCTTTTTAACCTGAGATTACAGATACTTA
 961 TAAAACCCTCTATAAATAGATTACCCAAGGTTTTTCAGTGAGAATGAAACATACCACCTTGTTGGCTCTACCACTTTAAT
1041 TAATATCACTATAACATAACTGATAGGAATGAATCAAAGGAGGATTTACCATGCCCTTTCGGTTGTGTCCCACTTAACAA
1121 ATTGTGAAGTAACAATTTTCTGTAATCTCTCTTGCCTCTTAGCTGTTATCCAGAGTATAGAAACTTTTTTTCTCCCAGAG
1201 CCACCCAACGTCATAAAACTGGTAGTACTCTAATGGTGAAAACCTGTGGAGCTGTCAGAAGACATGAACTTGCTTTTCCT
1281 CTAGTCCAGTTTCCATTCTTCAGTCAGAGTATGATGATCCCTGTGACAGTTTTTGCTCTGAAATAGTATTTATCATGTGT
1361 TTGGTACCTAGTATTATGCTTTCTCATGACAGTTTCTCAACAATCCTGTGAGGCAAATTCGCATGTACCCTCTGTATTAG
1441 TGTGTTCTCATGCTGTTGATAAAGACACACCTGAGATGGTAATTTGTAAAGAAAAAGGTTTAATGGACTCACAGTTCCAT
1521 GTGGCTGGGGAGGCCTCACAATCATGGTGGAAGGTGAAAGGCACGTCTTACATGGCGGTGGACAAGAGAGAATGAGAACT
1601 AAGTGAAAAGGGAAACCCTTTTAAAACCATCAGATATCGTGAGACTTATTTACTACCATGAGAACAGTATGGGGGAAACA
1681 ACTCCATGATTCAGTTATCTCCCACCAGGTTCCTCCCACAACACGTGGGAATTATAGGAGCTACAATTCAAGATGAGATT
1761 TGAGTGGGAACACAGCCAAACCATATCACCTTCAAAGAAGAAATAAGAGAATTATTAGTAATTTGCTCAGAATCTGGTAT
1841 GTGGAAGAGCCAACATGGGGACCCAGCCTTTTGTGATTCTAAAACCTTTGATCTTTCTACTAACATTCACTGTTAGAGAG
1921 TGTAGGCGCTGCAGGAGAAAGAGAAAGTGCCCACGAAAATTAGTCTAGCATTGCCGGGGGTAAAAAGCACACACTGGTCC
2001 TGCAGCTTATTGAATCAGAGAAATGTGAAGATAAGATGAACTAAACAAACATATTTTAGAGCATGGATCTCGAAGCAGAA
2081 TTTGGCTAAATTTTAACAAAATGTTCTTCAGTAACACATCTCATGATCTGAAGATTGTGTTACAAAAAATATTATCAGGC
2161 CAAAATTTGTTCGGAATACACTAATTTTTGCTCCTCTATATGTGAGGAAAATGAGACTAGACAGATTTAAGTAATTGACA
2241 ACTTACTTAAAGTAGCAAAGTCATGGATTGTATTGACTTTTAAAAATATAGTAAAAGTCATATTTAAACTTTATCCTAAA
2321 GTTTAAATCTAACAGAACAACTGAAATACTTGAAATAGACCTATAAAATAGTAATTAAAATGAGAAATACATAAGATGAT
2401 AAATAAAATGAAGGTGAAGGTATTCCAGATCTACCGAAAAGATTTTCAGTATCACAGATTATTCATAAGAAATTGAGAAA
2481 AGGAACAATCAGAAGTTGCAAAAGATGGTATAGCCGAATATAATGGAAATAGGAAAAATTAGTCGAAAATAAAGGTTGAT
2561 TTAGAAATGAAGAAAATGAATATATTTCTTAATACAAAATAAGTGGGAAATGAGAAGTTATACCAATAAAAAGCATTTAA
2641 AAATTTAGGGGATATTGTAACCCAGTATAATTTTCTGACAGGTTGGACTTTGACCCTAATGGACTTACTGGTGAACTTTT
2721 TCAAATGTTTAAATAATGTCTATCCATGTATCATGAAGGACAGTATGCTTCAAATTGTCTTTTGAGGCAGACATGTTCTC
2801 AGTACTAAAAGACATTTTTAGAAGGATTTTATTCTCAACAGATGCAAAATGCAAAATAAAATATTGGCAAACAATACAGC
2881 AACAAATAATTTACTATCACTCAGGATTATAAGGCTGGTGTTAAGCAGAACAGCCATTAAATCAGCATCAAAAGAACAAA
2961 TAGTAAAATCCAAAGTATTAATTACAGATAACTTTTCAAAAATTCATCATTCACCCTTGATTTAATTATTTCTCTGGCAA
3041 TGATTTAATAGACTTCTCGGAGTCTGTTAAGTACTTAAACCAAGAACTACCATTATTCCTACTGGGAAAACATAAACATT
3121 TCTCAAGTGGAAAGTAAACAGTGTTGGCACTATTTTTATATATGGTTAAAGAGACCTGTCATTGCAATAAAAGCCAGCAT
3201 TCACAAAATGAGGAAGATAAGGAAAGTAGCATAAATATTTTCTATTAACATGGCTTTACAACTGCTAAAACTTATAGTAT
3281 AAAAATGTACTAACAAAGACTAATTCAAGAAGTTGCAGGATACACAATTTTTAAAAATCTCATTTCTACATCTTAGCAGT
3361 GACAAACTGCAATTTAAAAAGTGTGTTTGGTTATTAATATATATGAGACTTTTAAAGAAAGTTATATAACTACATAGAGA
3441 TAAATTAAGAAAGATGCCTAAATAGAAGCAAGTTTAAAGAGCTATATTTTTAAACATGAACAAACTCCCATGGGAGCCAT
3521 GCCAGTGTAGTGGAAAAGTAGTACATGGGGAGATGGGGAGTTTTTTTGAAAACCAGAATTACAGTTCTCATTTCACTACT
3601 TACCAGTTGTATACTCTTGGGAAAGTCACTCCTAGTATCTATTTCACCATCTACAGAAGAGAAATACTTCACAGAATTAT
3681 TGTGGGGATTAAGTTAGATAATGTGTTTTAAAATATAAAGCTACATCCAAAGAAATGCCAATATGTGACATTAGTATGAA
3761 ATTTACTACAGTTCCATTTAACATTCCAACTGGTTGCTGTGTGGAATATGGCATAATTGTAATAAATTATTTAGGAAAGC
3841 AAGCAAAGATGTAAGTTTTTTTAATTTAGGGGGAAAAAATGGGAGCCTTGCTCTCCAAATCCTTAAAACATGCTATTAAG
3921 CAACCTTTCTGAATATTCTGTGGTGCCAAGTAGAAAGTTTAACTGAAATTAATAAGCCAATGGAAAGAAAGAAATATTAA
4001 TAACTGCTGGTGGAAAGACTAGCTAGATGTCAGTGTGGAAAGATTAGATCCACTTTACATGTGATATTCCAAATGAATTA
4081 AAATGTTAAGTATAAAAAGAAAAATACTACAAGTCTCACACCAATAGTGGTATAAAGGAACTTCATGGCAATTGGCAAGG
4161 TAGATCAACTAAGAGAAAAAGTTTTAAATGTGTAGTAAATAGGAAAAAGACAAAACAAGATGGAATTTAAAAGAAGCTAT
4241 TTGCATTACACATGGATGCACTCAGTTTTTGTAAAACTATATGCATATCCATAAGGGTTTGTACTCTTAGGCAAATTTAT
4321 AAAGCGATCGTGTATAAATGATATAAAAAATCAATTTGAATGGTATTCAAATTTCCTAATATTAAAAATGCAACTTTGAC
4401 TTAGTTCATGCTATTGTATTAGCAAAACTGTTTTAATTGCATGTGTCCTTATAGCAGCAGCATTGTGTATTAGTAGCCTT
4481 TTAAGAGAACTGTGTAGAAGACTATAAAAAGGGCTTTATAACTGATCTTTTGACATACTCACTTTGAGTGGCATATGCCC
4561 AGGAAAATATTTAAAAGAAAGAAAAGCTATTTGTACAAAGTTTTCTAGCAGTTCCACTCAGATAACTTTAAGGGGGAAAA
4641 AAGCCCAACGATTGGAAATGGTTAAGTAAATTTTGGTGTATTGCTAGTGCTATCACAGAATGTTATATAGCCATTCAATA
4721 ATATTGATATATGTCAAATTGTATGCAAAAAAGTGAGATTCAAAAATGTTAATAAGAACATAAATTGTGTTTACTGATAC
4801 ATGTGAAAATTTAGGTCTACATTGAAAAGAATCAGAAGATAACATGTAATTCAGTTTAACATTAGGGGTTCTTTATTTTT
4881 CTTCTGTTAAATATTGATGTATGCAATAAAAAATAAAAGATTAATTGGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' caUUCUUCACGAAUGUAACGUc 5'
            || :||  ||  ||||||| 
Target 5' ttAAAGAGACCTGTCATTGCAa 3'
3166 - 3187 156.00 -9.90
2
miRNA  3' caUUCUUC-ACGAAUGUAACGUc 5'
            |||||| | :||:|||| || 
Target 5' aaAAGAAGCTATTTGCATTACAc 3'
4229 - 4251 144.00 -10.80
3
miRNA  3' caUUCUUCACGAAUGUAACGuc 5'
            ||  ||| || :||||||  
Target 5' aaAATTAGT-CTAGCATTGCcg 3'
1956 - 1976 139.00 -9.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30519375 34 COSMIC
COSN31495839 38 COSMIC
COSN31531462 39 COSMIC
COSN30503443 56 COSMIC
COSN31503716 92 COSMIC
COSN30503529 96 COSMIC
COSN30189726 138 COSMIC
COSN20096198 146 COSMIC
COSN30114879 159 COSMIC
COSN22275844 401 COSMIC
COSN23352141 522 COSMIC
COSN29227257 595 COSMIC
COSN28030151 819 COSMIC
COSN22554796 1288 COSMIC
COSN14634374 1469 COSMIC
COSN29873682 1724 COSMIC
COSN8451938 1970 COSMIC
COSN7988389 1998 COSMIC
COSN24026574 2125 COSMIC
COSN7212068 2352 COSMIC
COSN24294633 2361 COSMIC
COSN1439450 2662 COSMIC
COSN22848737 2737 COSMIC
COSN6030159 2753 COSMIC
COSN7212067 2784 COSMIC
COSN7212066 2805 COSMIC
COSN15662455 2841 COSMIC
COSN5369222 2883 COSMIC
COSN2497909 2985 COSMIC
COSN6030158 3101 COSMIC
COSN21194351 3196 COSMIC
COSN16746530 3991 COSMIC
COSN10045247 4042 COSMIC
COSN32064750 4365 COSMIC
COSN19049600 4446 COSMIC
COSN8451937 4631 COSMIC
COSN31513021 4637 COSMIC
COSN31571811 4698 COSMIC
COSN31519096 4769 COSMIC
COSN8637869 4780 COSMIC
COSN31481631 4795 COSMIC
COSN30165476 4796 COSMIC
COSN31584272 4810 COSMIC
COSN31569886 4829 COSMIC
COSN31481634 4905 COSMIC
rs138332350 2874 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1318700684 5 dbSNP
rs780044404 6 dbSNP
rs201439073 7 dbSNP
rs750635085 12 dbSNP
rs772627535 14 dbSNP
rs76973247 15 dbSNP
rs750692689 17 dbSNP
rs372520346 20 dbSNP
rs1222515292 25 dbSNP
rs753704460 26 dbSNP
rs368558008 30 dbSNP
rs1214384321 33 dbSNP
rs760579475 36 dbSNP
rs1286607545 37 dbSNP
rs1233377576 38 dbSNP
rs775034492 39 dbSNP
rs1213139181 42 dbSNP
rs1453386146 58 dbSNP
rs1022323855 64 dbSNP
rs966329937 67 dbSNP
rs1200303455 68 dbSNP
rs552237608 79 dbSNP
rs892750480 81 dbSNP
rs866644441 88 dbSNP
rs1383361280 96 dbSNP
rs1444839758 96 dbSNP
rs1471101656 98 dbSNP
rs532153671 101 dbSNP
rs1260955621 103 dbSNP
rs748586257 105 dbSNP
rs1020893819 115 dbSNP
rs1400357352 118 dbSNP
rs1052693020 122 dbSNP
rs1355793360 123 dbSNP
rs1277873788 127 dbSNP
rs1013545620 131 dbSNP
rs1233297403 132 dbSNP
rs944908346 134 dbSNP
rs1347347462 136 dbSNP
rs1453411361 137 dbSNP
rs1336141209 139 dbSNP
rs1275720726 143 dbSNP
rs890628830 143 dbSNP
rs1235504744 146 dbSNP
rs199997422 148 dbSNP
rs1339271411 150 dbSNP
rs148004337 151 dbSNP
rs3835408 151 dbSNP
rs773390501 151 dbSNP
rs1318224169 152 dbSNP
rs200671763 152 dbSNP
rs1401095998 154 dbSNP
rs1363042552 156 dbSNP
rs566438929 157 dbSNP
rs1280516130 159 dbSNP
rs1311375240 160 dbSNP
rs1434503337 161 dbSNP
rs1395296342 162 dbSNP
rs1350322846 163 dbSNP
rs1050994782 175 dbSNP
rs1174038037 179 dbSNP
rs932430008 183 dbSNP
rs920987266 205 dbSNP
rs746373558 206 dbSNP
rs973739254 207 dbSNP
rs1240720030 208 dbSNP
rs1439548241 212 dbSNP
rs774776362 213 dbSNP
rs898588578 219 dbSNP
rs1468374921 225 dbSNP
rs1157247260 226 dbSNP
rs1431788786 245 dbSNP
rs1470409238 260 dbSNP
rs1371946245 267 dbSNP
rs1175879380 270 dbSNP
rs76360191 277 dbSNP
rs1393648054 280 dbSNP
rs908507755 285 dbSNP
rs1330091575 287 dbSNP
rs527942879 294 dbSNP
rs1408437855 297 dbSNP
rs1285547131 304 dbSNP
rs940026706 307 dbSNP
rs1489191757 312 dbSNP
rs1253756944 314 dbSNP
rs1340777499 319 dbSNP
rs887075986 344 dbSNP
rs1051036435 354 dbSNP
rs749621052 356 dbSNP
rs960873684 364 dbSNP
rs1201373553 365 dbSNP
rs1255335041 389 dbSNP
rs1480921492 391 dbSNP
rs1175883871 397 dbSNP
rs878962109 401 dbSNP
rs1209868240 403 dbSNP
rs1396463293 406 dbSNP
rs934273479 410 dbSNP
rs568825750 411 dbSNP
rs1346479179 412 dbSNP
rs976013783 414 dbSNP
rs980990322 415 dbSNP
rs546228598 419 dbSNP
rs748232210 420 dbSNP
rs1340051962 421 dbSNP
rs1224614895 422 dbSNP
rs1010945287 425 dbSNP
rs892468429 426 dbSNP
rs1031381000 432 dbSNP
rs1292232835 434 dbSNP
rs541971724 436 dbSNP
rs1190848031 438 dbSNP
rs1265591048 452 dbSNP
rs966443918 452 dbSNP
rs1194075779 453 dbSNP
rs1342870128 456 dbSNP
rs1448216844 476 dbSNP
rs1165948498 480 dbSNP
rs531780167 481 dbSNP
rs149904773 486 dbSNP
rs1414549781 488 dbSNP
rs1424370226 489 dbSNP
rs1020671593 491 dbSNP
rs1386739724 493 dbSNP
rs546258777 498 dbSNP
rs991821220 504 dbSNP
rs890672235 506 dbSNP
rs1362328331 510 dbSNP
rs960937378 520 dbSNP
rs1050632025 525 dbSNP
rs528060151 529 dbSNP
rs996281080 536 dbSNP
rs1336579983 537 dbSNP
rs577302528 545 dbSNP
rs1395324519 549 dbSNP
rs1219153520 550 dbSNP
rs1262265558 551 dbSNP
rs1038084184 555 dbSNP
rs1487005336 568 dbSNP
rs1205879103 573 dbSNP
rs941077528 576 dbSNP
rs908212686 583 dbSNP
rs1185991222 587 dbSNP
rs1016982887 593 dbSNP
rs1444531546 596 dbSNP
rs1462582638 599 dbSNP
rs1163203434 609 dbSNP
rs1047140828 612 dbSNP
rs1365904042 612 dbSNP
rs1374845678 614 dbSNP
rs1385829611 616 dbSNP
rs1454159437 622 dbSNP
rs939301792 628 dbSNP
rs1336775641 635 dbSNP
rs887187485 639 dbSNP
rs369231713 641 dbSNP
rs1051067402 652 dbSNP
rs3765824 655 dbSNP
rs543324463 656 dbSNP
rs900094675 665 dbSNP
rs531079719 671 dbSNP
rs1187184829 675 dbSNP
rs1205695243 677 dbSNP
rs969201621 680 dbSNP
rs1483244820 683 dbSNP
rs1180566762 695 dbSNP
rs371756278 703 dbSNP
rs926146441 712 dbSNP
rs1475399073 722 dbSNP
rs915367319 731 dbSNP
rs977585717 745 dbSNP
rs945131346 755 dbSNP
rs1176598181 756 dbSNP
rs1404645180 771 dbSNP
rs139068296 772 dbSNP
rs989566903 774 dbSNP
rs1445736446 779 dbSNP
rs1299772996 780 dbSNP
rs1436226461 789 dbSNP
rs1272578023 793 dbSNP
rs1199340330 796 dbSNP
rs956738943 797 dbSNP
rs1320180875 800 dbSNP
rs1390655788 802 dbSNP
rs1031011827 806 dbSNP
rs1271793272 810 dbSNP
rs676750 814 dbSNP
rs1311613632 816 dbSNP
rs1208684922 821 dbSNP
rs960380174 824 dbSNP
rs1481225899 846 dbSNP
rs1181990577 847 dbSNP
rs1034015521 848 dbSNP
rs980678890 856 dbSNP
rs962594565 860 dbSNP
rs1423892841 862 dbSNP
rs1440480118 865 dbSNP
rs554914457 872 dbSNP
rs183100785 873 dbSNP
rs1003981352 875 dbSNP
rs151171947 878 dbSNP
rs1347102995 879 dbSNP
rs545227067 881 dbSNP
rs1029652288 889 dbSNP
rs1029715742 890 dbSNP
rs1284119376 891 dbSNP
rs996341679 894 dbSNP
rs899344201 895 dbSNP
rs1308656737 900 dbSNP
rs1391710386 913 dbSNP
rs1163607449 919 dbSNP
rs1405842469 923 dbSNP
rs1037800700 927 dbSNP
rs998597823 927 dbSNP
rs1005274866 930 dbSNP
rs886837542 947 dbSNP
rs1469490417 948 dbSNP
rs1040104942 957 dbSNP
rs1476820569 960 dbSNP
rs1046753263 966 dbSNP
rs939003773 968 dbSNP
rs1000493510 970 dbSNP
rs1179543762 973 dbSNP
rs1459129840 980 dbSNP
rs1310382064 982 dbSNP
rs1166571261 984 dbSNP
rs1367250772 985 dbSNP
rs927934931 986 dbSNP
rs1322611085 987 dbSNP
rs558497755 988 dbSNP
rs1322782961 989 dbSNP
rs1272012485 1005 dbSNP
rs1045000162 1014 dbSNP
rs1274414584 1015 dbSNP
rs1362668748 1027 dbSNP
rs538710239 1030 dbSNP
rs904758677 1032 dbSNP
rs1295981549 1039 dbSNP
rs1362194158 1045 dbSNP
rs947910876 1045 dbSNP
rs372709054 1046 dbSNP
rs1289614198 1048 dbSNP
rs1222419818 1049 dbSNP
rs566458519 1051 dbSNP
rs546158544 1055 dbSNP
rs1217425470 1056 dbSNP
rs946170245 1062 dbSNP
rs1464021435 1063 dbSNP
rs1186624028 1088 dbSNP
rs1387052452 1092 dbSNP
rs529644656 1095 dbSNP
rs989283944 1100 dbSNP
rs765217048 1101 dbSNP
rs924002238 1110 dbSNP
rs1350454936 1112 dbSNP
rs1309499559 1123 dbSNP
rs3765822 1126 dbSNP
rs954873104 1142 dbSNP
rs1320487392 1144 dbSNP
rs1368374644 1151 dbSNP
rs1324561591 1153 dbSNP
rs939021826 1157 dbSNP
rs1385710123 1165 dbSNP
rs781174194 1169 dbSNP
rs996392506 1170 dbSNP
rs1156923082 1171 dbSNP
rs781144873 1184 dbSNP
rs1225151087 1192 dbSNP
rs35774395 1192 dbSNP
rs963568236 1194 dbSNP
rs980842852 1195 dbSNP
rs962623907 1197 dbSNP
rs1206351797 1199 dbSNP
rs80165134 1202 dbSNP
rs1004991413 1204 dbSNP
rs1186667957 1205 dbSNP
rs1235553629 1207 dbSNP
rs193173140 1209 dbSNP
rs1251385081 1210 dbSNP
rs1190667647 1211 dbSNP
rs1456910813 1213 dbSNP
rs1157111659 1223 dbSNP
rs553495655 1226 dbSNP
rs1025809273 1228 dbSNP
rs1030169810 1235 dbSNP
rs1339104480 1240 dbSNP
rs1003248360 1248 dbSNP
rs374757763 1249 dbSNP
rs1044716433 1254 dbSNP
rs1349553384 1257 dbSNP
rs1226128133 1259 dbSNP
rs964475986 1264 dbSNP
rs1018301429 1292 dbSNP
rs1199823898 1297 dbSNP
rs1446952546 1298 dbSNP
rs947962589 1310 dbSNP
rs904789814 1317 dbSNP
rs34608401 1322 dbSNP
rs1041969697 1328 dbSNP
rs893703865 1338 dbSNP
rs563084105 1343 dbSNP
rs895952276 1345 dbSNP
rs552513160 1349 dbSNP
rs1431584315 1364 dbSNP
rs1466574969 1366 dbSNP
rs1057481416 1390 dbSNP
rs760364068 1408 dbSNP
rs1412115519 1410 dbSNP
rs1053641422 1420 dbSNP
rs879615166 1421 dbSNP
rs935145700 1423 dbSNP
rs1302311355 1424 dbSNP
rs1407643877 1425 dbSNP
rs1284749937 1428 dbSNP
rs926347317 1440 dbSNP
rs1219301331 1444 dbSNP
rs532612646 1446 dbSNP
rs924090133 1448 dbSNP
rs987964458 1449 dbSNP
rs1044763516 1451 dbSNP
rs933387401 1455 dbSNP
rs72768041 1459 dbSNP
rs758992113 1460 dbSNP
rs1361091297 1466 dbSNP
rs1299743778 1471 dbSNP
rs139825350 1477 dbSNP
rs909819111 1478 dbSNP
rs1016459547 1488 dbSNP
rs770509844 1491 dbSNP
rs1433956096 1492 dbSNP
rs950945008 1495 dbSNP
rs1198316443 1497 dbSNP
rs748847361 1499 dbSNP
rs1375938465 1502 dbSNP
rs982631399 1504 dbSNP
rs372272173 1510 dbSNP
rs146146463 1513 dbSNP
rs561311268 1514 dbSNP
rs1391086819 1520 dbSNP
rs1385864001 1522 dbSNP
rs906250534 1524 dbSNP
rs1327610380 1527 dbSNP
rs1229095957 1530 dbSNP
rs1023324615 1537 dbSNP
rs1011900447 1538 dbSNP
rs143095189 1544 dbSNP
rs1219232105 1547 dbSNP
rs1488935269 1554 dbSNP
rs1209390974 1556 dbSNP
rs769411537 1561 dbSNP
rs1255025405 1563 dbSNP
rs575481691 1564 dbSNP
rs114933305 1565 dbSNP
rs117917932 1566 dbSNP
rs1291392265 1569 dbSNP
rs1213489827 1572 dbSNP
rs116757065 1573 dbSNP
rs1035886128 1576 dbSNP
rs557166120 1577 dbSNP
rs904952162 1578 dbSNP
rs779095672 1579 dbSNP
rs974746034 1580 dbSNP
rs888148418 1582 dbSNP
rs376125952 1584 dbSNP
rs1247476203 1590 dbSNP
rs909509635 1593 dbSNP
rs929920220 1598 dbSNP
rs1423553301 1599 dbSNP
rs922501013 1600 dbSNP
rs1365227655 1606 dbSNP
rs764852932 1633 dbSNP
rs976626570 1636 dbSNP
rs111996330 1637 dbSNP
rs911313436 1638 dbSNP
rs577891620 1639 dbSNP
rs1470932025 1649 dbSNP
rs1303305023 1654 dbSNP
rs750576010 1668 dbSNP
rs1036279044 1675 dbSNP
rs1394111213 1684 dbSNP
rs1020335862 1687 dbSNP
rs981607536 1688 dbSNP
rs1196521089 1692 dbSNP
rs566902141 1694 dbSNP
rs1023375387 1697 dbSNP
rs1327116567 1699 dbSNP
rs1212890615 1707 dbSNP
rs960347603 1710 dbSNP
rs1257149791 1715 dbSNP
rs972609676 1724 dbSNP
rs1182839047 1725 dbSNP
rs1036321352 1742 dbSNP
rs866372583 1753 dbSNP
rs1472714611 1762 dbSNP
rs1483994440 1763 dbSNP
rs1249315451 1769 dbSNP
rs1180949943 1771 dbSNP
rs1409154256 1773 dbSNP
rs139683233 1792 dbSNP
rs1016380884 1803 dbSNP
rs144810930 1809 dbSNP
rs1259889063 1812 dbSNP
rs1464471551 1828 dbSNP
rs569474563 1829 dbSNP
rs757378829 1840 dbSNP
rs753947267 1853 dbSNP
rs888180995 1855 dbSNP
rs1031977852 1863 dbSNP
rs149404071 1864 dbSNP
rs1221057248 1867 dbSNP
rs1302069760 1870 dbSNP
rs999863742 1871 dbSNP
rs1208574172 1873 dbSNP
rs902405245 1881 dbSNP
rs538444478 1884 dbSNP
rs778058778 1891 dbSNP
rs901109461 1893 dbSNP
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rs1294214176 1950 dbSNP
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rs1300505893 1966 dbSNP
rs928904148 1967 dbSNP
rs1425992680 1970 dbSNP
rs1272914259 1973 dbSNP
rs76629357 1975 dbSNP
rs970334884 1976 dbSNP
rs1016412166 1983 dbSNP
rs1457950259 1987 dbSNP
rs1189915762 1993 dbSNP
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rs957747058 2001 dbSNP
rs1415626450 2015 dbSNP
rs1025324285 2017 dbSNP
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Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' caUUCUUCACGAAUGUAACGUc 5'
            ::|:|| |:|   |||||| 
Target 5' uuGGGGAG-GUUG--AUUGCAa 3'
7 - 25
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000366553.1 | 3UTR | CUCAUUUUGGGGAGGUUGAUUGCAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.565 2.0e-3 -0.428 1.8e-2 24 Click to see details
GSE42095 Differentiated embryonic stem cells 0.565 2.5e-3 0.543 3.7e-3 23 Click to see details
GSE19350 CNS germ cell tumors -0.636 1.3e-2 -0.037 4.5e-1 12 Click to see details
GSE28260 Renal cortex and medulla 0.509 3.8e-2 0.401 8.7e-2 13 Click to see details
GSE21032 Prostate cancer 0.153 8.4e-2 0.073 2.6e-1 83 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.272 9.4e-2 -0.069 3.7e-1 25 Click to see details
GSE17498 Multiple myeloma -0.169 1.5e-1 -0.168 1.5e-1 40 Click to see details
GSE21687 Ependynoma primary tumors -0.094 2.3e-1 -0.026 4.2e-1 64 Click to see details
GSE32688 Pancreatic cancer -0.132 2.4e-1 -0.186 1.5e-1 32 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.161 2.5e-1 0.340 7.1e-2 20 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.276 3.3e-1 -0.100 4.4e-1 5 Click to see details
GSE38226 Liver fibrosis -0.024 4.6e-1 -0.029 4.5e-1 21 Click to see details
GSE26953 Aortic valvular endothelial cells 0.013 4.8e-1 0.046 4.2e-1 24 Click to see details
GSE26953 Aortic valvular endothelial cells 0.013 4.8e-1 0.046 4.2e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRC -0.617 0.07 -0.393 0.19 7 Click to see details
HNSC 0.717 0.09 0.700 0.09 5 Click to see details
LUSC -0.691 0.15 -0.400 0.3 4 Click to see details
KIRP -0.295 0.16 -0.170 0.29 13 Click to see details
LIHC 0.834 0.19 1.000 0.5 3 Click to see details
STAD 0.541 0.23 0.800 0.1 4 Click to see details
PRAD 0.115 0.25 0.018 0.46 37 Click to see details
BRCA -0.309 0.28 -0.086 0.44 6 Click to see details
KICH -0.182 0.41 -0.600 0.2 4 Click to see details
KICH -0.182 0.41 -0.600 0.2 4 Click to see details
KICH -0.182 0.41 -0.600 0.2 4 Click to see details
KICH -0.182 0.41 -0.600 0.2 4 Click to see details
KICH -0.182 0.41 -0.600 0.2 4 Click to see details
KICH -0.182 0.41 -0.600 0.2 4 Click to see details
162 hsa-miR-106a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056049 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT065618 CLIC4 chloride intracellular channel 4 2 4
MIRT071648 DICER1 dicer 1, ribonuclease III 2 4
MIRT081712 ZNF507 zinc finger protein 507 2 2
MIRT093589 SPCS3 signal peptidase complex subunit 3 2 2
MIRT094223 G3BP2 G3BP stress granule assembly factor 2 2 2
MIRT125225 KLHL15 kelch like family member 15 2 6
MIRT169562 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT179227 KMT2A lysine methyltransferase 2A 2 2
MIRT180842 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT248803 SESN2 sestrin 2 2 2
MIRT257843 FAM46A family with sequence similarity 46 member A 2 2
MIRT261799 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT368750 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT448814 FKBP1A FK506 binding protein 1A 2 4
MIRT448950 CDK19 cyclin dependent kinase 19 2 2
MIRT452980 CABP4 calcium binding protein 4 2 2
MIRT454110 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT456599 CHML CHM like, Rab escort protein 2 2 2
MIRT461652 G6PC glucose-6-phosphatase catalytic subunit 2 2
MIRT464838 RPS27A ribosomal protein S27a 2 12
MIRT469511 RBFOX2 RNA binding protein, fox-1 homolog 2 2 8
MIRT471103 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT475451 HSPA8 heat shock protein family A (Hsp70) member 8 2 6
MIRT478236 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT480179 CALM2 calmodulin 2 2 8
MIRT481376 ATG12 autophagy related 12 2 2
MIRT495841 PLXDC1 plexin domain containing 1 2 2
MIRT498772 PARP15 poly(ADP-ribose) polymerase family member 15 2 4
MIRT502394 GATA6 GATA binding protein 6 2 8
MIRT504543 ZNF417 zinc finger protein 417 2 6
MIRT504953 ZNRF2 zinc and ring finger 2 2 6
MIRT505044 ZNF226 zinc finger protein 226 2 2
MIRT505285 TRIM66 tripartite motif containing 66 2 6
MIRT508006 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508372 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT509026 PALM2-AKAP2 PALM2-AKAP2 readthrough 2 2
MIRT509045 AKAP2 A-kinase anchoring protein 2 2 2
MIRT509640 ZNF354B zinc finger protein 354B 2 10
MIRT512961 KMO kynurenine 3-monooxygenase 2 4
MIRT517859 NCAPD2 non-SMC condensin I complex subunit D2 2 4
MIRT517944 TRIM59 tripartite motif containing 59 2 2
MIRT525900 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT529446 SLC28A2 solute carrier family 28 member 2 2 2
MIRT531095 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT534557 RRAS2 RAS related 2 2 2
MIRT537004 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT538407 COX20 COX20, cytochrome c oxidase assembly factor 2 2
MIRT540635 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT546660 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT547958 HIGD1A HIG1 hypoxia inducible domain family member 1A 2 4
MIRT552022 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT554238 SLBP stem-loop binding protein 2 2
MIRT555287 PPP6R1 protein phosphatase 6 regulatory subunit 1 2 2
MIRT556139 MFF mitochondrial fission factor 2 2
MIRT556419 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT557258 HMGXB4 HMG-box containing 4 2 2
MIRT557318 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT557774 FRS2 fibroblast growth factor receptor substrate 2 2 2
MIRT559634 AKAP10 A-kinase anchoring protein 10 2 2
MIRT561616 SESN3 sestrin 3 2 2
MIRT566174 PURA purine rich element binding protein A 2 2
MIRT567183 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT611357 LARP4B La ribonucleoprotein domain family member 4B 2 2
MIRT616553 ZNF512B zinc finger protein 512B 2 2
MIRT617308 FAM9C family with sequence similarity 9 member C 2 2
MIRT624899 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT627008 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT627071 SF3A1 splicing factor 3a subunit 1 2 2
MIRT628271 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT629231 CINP cyclin dependent kinase 2 interacting protein 2 2
MIRT629403 ADM2 adrenomedullin 2 2 2
MIRT629580 RFC2 replication factor C subunit 2 2 2
MIRT629631 WDR31 WD repeat domain 31 2 2
MIRT629796 GPR82 G protein-coupled receptor 82 2 2
MIRT629870 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT629916 POLR2D RNA polymerase II subunit D 2 2
MIRT629979 NARS asparaginyl-tRNA synthetase 2 2
MIRT630038 TERF2 telomeric repeat binding factor 2 2 2
MIRT630057 NIP7 NIP7, nucleolar pre-rRNA processing protein 2 2
MIRT630151 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT630245 SMTNL2 smoothelin like 2 2 2
MIRT630274 PSMB5 proteasome subunit beta 5 2 2
MIRT630344 NKAP NFKB activating protein 2 2
MIRT630493 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT631628 ZNF383 zinc finger protein 383 2 2
MIRT632467 RPS15A ribosomal protein S15a 2 2
MIRT632509 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT632591 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT632989 DUSP18 dual specificity phosphatase 18 2 2
MIRT633077 CXorf21 chromosome X open reading frame 21 2 2
MIRT635044 MYH11 myosin heavy chain 11 2 2
MIRT636646 CDK4 cyclin dependent kinase 4 2 2
MIRT637185 ROMO1 reactive oxygen species modulator 1 2 2
MIRT637918 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT642640 PTGR2 prostaglandin reductase 2 2 2
MIRT644231 SLC35E3 solute carrier family 35 member E3 2 2
MIRT644659 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT645084 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT645985 ACP6 acid phosphatase 6, lysophosphatidic 2 2
MIRT646980 SCARB1 scavenger receptor class B member 1 2 2
MIRT647421 ODF4 outer dense fiber of sperm tails 4 2 2
MIRT648322 PLIN1 perilipin 1 2 2
MIRT648506 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT651460 XIAP X-linked inhibitor of apoptosis 2 2
MIRT656548 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT657371 HMGB1 high mobility group box 1 2 2
MIRT660828 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660916 ADAM19 ADAM metallopeptidase domain 19 2 2
MIRT661232 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662840 OMD osteomodulin 2 2
MIRT662902 MED18 mediator complex subunit 18 2 2
MIRT663518 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663537 CCR6 C-C motif chemokine receptor 6 2 2
MIRT664345 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT666074 SSTR2 somatostatin receptor 2 2 2
MIRT667219 NFE2L1 nuclear factor, erythroid 2 like 1 2 2
MIRT667756 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT668647 DYM dymeclin 2 2
MIRT671471 FLYWCH2 FLYWCH family member 2 2 2
MIRT671488 SLC38A9 solute carrier family 38 member 9 2 2
MIRT671917 PLEKHS1 pleckstrin homology domain containing S1 2 4
MIRT672285 GP2 glycoprotein 2 2 2
MIRT674022 ANKRD9 ankyrin repeat domain 9 2 2
MIRT674212 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT674510 PRR23A proline rich 23A 2 2
MIRT675095 SNTB2 syntrophin beta 2 2 2
MIRT675261 ZNF431 zinc finger protein 431 2 2
MIRT680630 KIAA1456 KIAA1456 2 2
MIRT681609 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681919 KAT7 lysine acetyltransferase 7 2 2
MIRT682042 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT682055 B4GALT7 beta-1,4-galactosyltransferase 7 2 4
MIRT683756 CPE carboxypeptidase E 2 2
MIRT690233 CENPK centromere protein K 2 2
MIRT699167 SMAD2 SMAD family member 2 2 2
MIRT699905 RUNDC1 RUN domain containing 1 2 2
MIRT704401 CTPS1 CTP synthase 1 2 2
MIRT706252 MKLN1 muskelin 1 2 2
MIRT708876 MOCS2 molybdenum cofactor synthesis 2 2 2
MIRT710788 IFNLR1 interferon lambda receptor 1 2 2
MIRT711947 SLC7A14 solute carrier family 7 member 14 2 2
MIRT712587 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT713335 KLRD1 killer cell lectin like receptor D1 2 2
MIRT713901 IGF2R insulin like growth factor 2 receptor 2 2
MIRT714079 ZNF532 zinc finger protein 532 2 2
MIRT714881 GOLPH3 golgi phosphoprotein 3 2 2
MIRT715190 FKTN fukutin 2 2
MIRT717798 FAM114A1 family with sequence similarity 114 member A1 2 2
MIRT721434 ARPC4 actin related protein 2/3 complex subunit 4 2 2
MIRT722777 PDE3A phosphodiesterase 3A 2 2
MIRT723415 FAM208B family with sequence similarity 208 member B 2 2
MIRT732545 AURKA aurora kinase A 1 0
MIRT732549 MYCN MYCN proto-oncogene, bHLH transcription factor 1 0
MIRT733122 YAP1 Yes associated protein 1 3 0
MIRT733238 VEGFA vascular endothelial growth factor A 1 0
MIRT733725 TGFB1 transforming growth factor beta 1 2 0
MIRT733728 NOTCH1 notch 1 2 0
MIRT733829 RUNX2 runt related transcription factor 2 1 0
MIRT733830 BMP2 bone morphogenetic protein 2 1 0
MIRT736953 SMAD7 SMAD family member 7 3 0
MIRT737029 FOXQ1 forkhead box Q1 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-106a Cisplatin approved 84093 Quantitative real-time PCR ovarian cancer cells 24348845 2014 up-regulated
miR-106a Cisplatin approved 84093 Microarray ovarian cancer 19237188 2009 down-regulated
miR-106a Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 down-regulated
miR-106a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-106a Diethylstilbestrol approved 448537 Quantitative real-time PCR mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-106a 5-Fluorouracil approved 3385 Microarray HCT-8 colon cancer cell line 19956872 2010 down-regulated
miR-106a Bisphenol A NULL 6623 Microarray immortalized cytotrophoblast cell lines HTR-8 20417706 2010 up-regulated
miR-106a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-106a Bicalutamide approved 2375 Microarray prostate 22674191 2012 down-regulated
miR-106a Narangin NULL 442428 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-106a Tamoxifen approved 2733526 Microarray rat liver 17343880 2007 up-regulated
miR-106a Tamoxifen approved 2733526 Quantitative real-time PCR rat liver 17343880 2007 up-regulated
miR-106a 17beta-estradiol (E2) approved 5757 Microarray rat breast 17700064 2007 up-regulated
miR-106a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR rat breast 17700064 2007 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-106a-3p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-106a-3p Paclitaxel 36314 NSC125973 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-106a-3p Apatinib 11315474 NSC772886 resistant Low Gastric Cancer cell line (SGC-7901)
hsa-miR-106a-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-106a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-106a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-106a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-106a-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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