pre-miRNA Information
pre-miRNA hsa-mir-6799   
Genomic Coordinates chr19: 49791866 - 49791934
Description Homo sapiens miR-6799 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6799-5p
Sequence 6| GGGGAGGUGUGCAGGGCUGG |25
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1439869964 1 dbSNP
rs1206286688 3 dbSNP
rs767550469 6 dbSNP
rs1471732220 9 dbSNP
rs986966775 11 dbSNP
rs754316096 12 dbSNP
rs757819623 15 dbSNP
rs1473089544 16 dbSNP
Putative Targets

Gene Information
Gene Symbol SLC35F6   
Synonyms ANT2BP, C2orf18, TANGO9
Description solute carrier family 35 member F6
Transcript NM_017877   
Expression
Putative miRNA Targets on SLC35F6
3'UTR of SLC35F6
(miRNA target sites are highlighted)
>SLC35F6|NM_017877|3'UTR
   1 GGTTCCCTGGAGGCTTCTACTGCCACCCGGGTGCTCCTTCTCCCTGAGACTGAGGCCACACAGGCTGGTGGGCCCCGAAT
  81 GCCCTATCCCCAAGGCCTCACCCTGTCCCCTCCCTGCAGAACCCCCAGGGCAGCTGCTGCCACAGAAGATAACAACACCC
 161 AAGTCCTCTTTTTCTCACTACCACCTGCAGGGTGGTGTTACCCAGCCCCCACAAGCCTGAGTGCAGTGGCAGACCTCAGC
 241 TCTCTGGACCCCTCCTACAGCACTAGAGCTAAATCATGAAGTTGAATTGTAGGAATTTACCACCGTAGTGTATCTGAATC
 321 ATAAACTAGATTATCATAGTTATCTAGTTTATGAGTCATAAGCTAGATTTGATTCTTCAAAGAAGAAAAGTCAGTGAGCA
 401 AATTTAAACCAGAACTAAGCATTATATTTTCTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTG
 481 CAGTGGCACGATCTCGGCGGCTCACTACAACCTCTGCCTCCCAGGTTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAG
 561 CTGGGATTACAGGTGCATAACACACCTGGGTAACTTTTATAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAA
 641 CTCCTGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACACCACACCCAGCCATA
 721 ACTAAGCATTATGTTTTCTAAAACTTCTAAGATCCTCCCTAAACCCGTCTGGAGACATGGGTTTTAGCCCAGACTCTGCC
 801 TCAAACTCATTGTAGCTCCCAGCACATTACCCAGTTGCTCTGGGCCTTGGTGTTATGCTCTGGGAAGTAGATGTTGATGC
 881 TGTGGCCTTAGTGCCTTCTGGCCCCAGCATTCCATGGGCCTGTGATCTTGACCAACCTGAGAAAACAGTAACAGCCCATC
 961 CACTGGAAATACCCCTCTGCCCACAGCACCACCCTTCTGTGCTGTTTTTTTTGTTGTTTGTTTGTTTCTTCTTTTTGAGA
1041 CAGAGTCTTGCTCTGTTGCCACGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCCGCTCCCAGGTTCAAGC
1121 AAGTCCCCTGAGTAGCTGGGACTACAGGCGTGTGCCACCACATCCGGCTAATTTTTTGCATTCTTTAATAGAGACGGGGT
1201 TTTGCCATGTTGGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGGTTAC
1281 AGGCATGAGCCACCACGCCCAGCCTTTTTTTTTTTTTTTTTTTTTTCTTGAGAGACAGGGTCTTGCTCTGTCACCCAGGC
1361 ACAGCTTACTGCAGCCTTGAACTCCTGGGATCAATCAGTCCTCCTGCCTCAGCCTCCCGAGTAGCTAAGACTAACAGGTA
1441 TGTACCACCATGCCTGGTTTATTGTTTTATTTTTTTGGCAGAGATGGGTCTCACTGTGTTGCCCAGGCTGATCTCAAACT
1521 CCTGGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTACAGACCTGAGCCACCACACCTGGGCAACAG
1601 AGTGAAACCTGTCCCTGTTTTCCTGCTCTTACTCTCACCTCTGAGGCCTCCTCTGCCTGGAAGAGATTACAGGGAAATTC
1681 CAGGCAGCCCTTGTCAATTGTTTTTATGAATTCTTTACCTGTTCCTTTTAAAGACAAGGAAACTGAGGCCCAAAGTTCTA
1761 AGTTGTTTGGCAAATGGAGTCTCCTACCCTCAGCTCCTGCAAGGACCTGGGGGACCCCCAGGTCCAGCAGCCACATGATT
1841 CTGCAGCAGACAGGGACCTAGAGCACATCTGGATCTCAGCCCCACCCCTGGCAACCTGCCTGCCTAGAGAACTCCCAAGA
1921 TGACAGACTAAGTAGGATTCTGCCATTTAGAATAATTCTGGTATCCTGGGCGTTGCGTTAAGTTGCTTAACTTTCATTCT
2001 GTCTTACGATAGTCTTCAGAGGTGGGAACAGATGAAGAAACCATGCCCCAGAGAAGGTTAAGTGACTTCCTCTTTATGGA
2081 GCCAGTGTTCCAACCTAGGTTTGCCTGATACCAGACCTGTGGCCCCACCTCCCATGCAGGTCTCTGTGGGGTCTTTGGGA
2161 TGGATCTCCTAGGGCTGGGCTGGAAGCCTCATGTACTGTTGTCTTCTAGGTAACCACCCTGAAGAGAAGGGGTGGCATCA
2241 GGAACCGCAGGGAACCAAGCAGCCTTTGGTCCAGTGCTGCTCCTTGGAACAGTTGAGTGTGGCCTCAAACCATTCTCCTG
2321 GGTAGCTCAGTCATAAAACACCGAATGCCTGCCTCAAAATAGCCTCTGAGGGAAGGGAGCTGTTGACAAGTGAAGCCCTC
2401 AGGTTGTGTGGGATTCCAGCAGGTTATTACAGCTTGTGGGGGGAGGGAGGGTCCATTCCACCAGCTTTGAATCCCAGGGT
2481 CCCCTCAGCTTCACTGGGCCACAGTGTCTGTCCCAGGAAGAAGCAAATGGACAGTGAGGATGATGGAGAGACTACAGCTG
2561 CCTTGTCTAAAACCTGGGATCTTAAAAGTGTTATTTTGGCTTTTATTTTTTAAAAAAAGAAAAGGAAAATTGGCAATTGT
2641 ATTAATCCATTCTCGAATTGCTGTAAAGAAATACCTGAGACTGGGTAATTTAATTTATAAAGAAAAGAGGTTTAATTGGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggUCGGGAC----GUGUGGAGGGg 5'
            || ||||    | |||||||| 
Target 5' ccAGACCTGTGGCCCCACCTCCCa 3'
2111 - 2134 160.00 -26.80
2
miRNA  3' ggucGGGACGUGUGGAGGGg 5'
              | ||||| ||||||| 
Target 5' ggctCACTGCA-ACCTCCCg 3'
1087 - 1105 159.00 -20.60
3
miRNA  3' ggucGGGACGUG--UGGAGGGg 5'
              :||||| :  :|||||| 
Target 5' attcTCCTGCCTCAGCCTCCCg 3'
534 - 555 138.00 -20.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26799545 8 COSMIC
COSN30472858 25 COSMIC
COSN9998155 31 COSMIC
COSN31577429 38 COSMIC
COSN31541851 52 COSMIC
COSN30118062 72 COSMIC
COSN31589880 135 COSMIC
COSN22322668 247 COSMIC
COSN28890553 277 COSMIC
COSN31518647 358 COSMIC
COSN21148491 861 COSMIC
COSN19310553 973 COSMIC
COSN32161416 1054 COSMIC
COSN20772581 1241 COSMIC
COSN25817432 1284 COSMIC
COSN25649710 1393 COSMIC
COSN28321119 1562 COSMIC
COSN17075809 1873 COSMIC
COSN6177292 1977 COSMIC
COSN9368919 2188 COSMIC
COSN26901114 2575 COSMIC
COSN29961348 2645 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs766437801 3 dbSNP
rs1274427607 6 dbSNP
rs749529563 7 dbSNP
rs760085578 8 dbSNP
rs1431828925 9 dbSNP
rs1255186384 11 dbSNP
rs767981392 13 dbSNP
rs201317348 15 dbSNP
rs753182277 17 dbSNP
rs375082105 20 dbSNP
rs948530685 23 dbSNP
rs763805131 27 dbSNP
rs753499182 28 dbSNP
rs1414470991 29 dbSNP
rs559059130 30 dbSNP
rs1224581522 31 dbSNP
rs1230716553 32 dbSNP
rs1270165489 33 dbSNP
rs981259017 34 dbSNP
rs1172283977 36 dbSNP
rs756681672 37 dbSNP
rs756918399 37 dbSNP
rs771366877 38 dbSNP
rs778613105 39 dbSNP
rs745336122 45 dbSNP
rs953849174 70 dbSNP
rs574602217 71 dbSNP
rs1334870776 74 dbSNP
rs905731798 77 dbSNP
rs1002689231 78 dbSNP
rs1160799306 80 dbSNP
rs1465038997 82 dbSNP
rs1035909017 102 dbSNP
rs934585900 103 dbSNP
rs950676094 106 dbSNP
rs983738990 111 dbSNP
rs1260629068 112 dbSNP
rs1052717850 127 dbSNP
rs1464099335 130 dbSNP
rs1286179447 134 dbSNP
rs1167481870 139 dbSNP
rs371539243 141 dbSNP
rs1015938220 149 dbSNP
rs1225161505 150 dbSNP
rs1347578361 151 dbSNP
rs947144879 151 dbSNP
rs1430043367 152 dbSNP
rs1327092992 154 dbSNP
rs1320431514 157 dbSNP
rs778336134 159 dbSNP
rs963038503 160 dbSNP
rs748639844 162 dbSNP
rs541909150 177 dbSNP
rs758858494 186 dbSNP
rs1177550304 193 dbSNP
rs1471173054 199 dbSNP
rs778144478 204 dbSNP
rs1166967369 206 dbSNP
rs1475576059 207 dbSNP
rs1243333164 209 dbSNP
rs1411813500 211 dbSNP
rs889563346 212 dbSNP
rs1243711015 223 dbSNP
rs1205281141 224 dbSNP
rs1315856706 225 dbSNP
rs376698389 226 dbSNP
rs563479596 229 dbSNP
rs1040573770 241 dbSNP
rs955069095 252 dbSNP
rs1405959014 256 dbSNP
rs530775668 261 dbSNP
rs7558945 263 dbSNP
rs146903158 267 dbSNP
rs1382626352 277 dbSNP
rs924077657 292 dbSNP
rs192551091 294 dbSNP
rs760082206 300 dbSNP
rs1398552063 305 dbSNP
rs7421206 306 dbSNP
rs1251324141 312 dbSNP
rs1340863639 314 dbSNP
rs183247497 317 dbSNP
rs565694949 319 dbSNP
rs1023446674 331 dbSNP
rs77595890 335 dbSNP
rs1185356330 337 dbSNP
rs1456444006 339 dbSNP
rs1045146956 343 dbSNP
rs562668661 344 dbSNP
rs7571091 348 dbSNP
rs906636749 362 dbSNP
rs188855311 373 dbSNP
rs1226612007 384 dbSNP
rs569805769 387 dbSNP
rs1358836064 393 dbSNP
rs1315892913 395 dbSNP
rs1331252798 397 dbSNP
rs537685992 401 dbSNP
rs7562031 405 dbSNP
rs1375379688 408 dbSNP
rs573011827 410 dbSNP
rs112024298 411 dbSNP
rs1463621491 424 dbSNP
rs1321178159 427 dbSNP
rs62128384 430 dbSNP
rs10628763 432 dbSNP
rs1164982335 432 dbSNP
rs1355526627 432 dbSNP
rs771958103 432 dbSNP
rs1161631924 434 dbSNP
rs1365243373 435 dbSNP
rs1407198153 436 dbSNP
rs1004842951 437 dbSNP
rs914507876 440 dbSNP
rs1177530987 441 dbSNP
rs1425657792 445 dbSNP
rs78337014 446 dbSNP
rs1359042344 448 dbSNP
rs1220520266 450 dbSNP
rs947019381 450 dbSNP
rs1049410547 451 dbSNP
rs1327625203 452 dbSNP
rs1224879985 454 dbSNP
rs910931659 458 dbSNP
rs1306949501 459 dbSNP
rs571147004 460 dbSNP
rs534975325 466 dbSNP
rs552944896 467 dbSNP
rs993735019 469 dbSNP
rs1048414664 471 dbSNP
rs1417357923 472 dbSNP
rs148364965 475 dbSNP
rs1159762681 476 dbSNP
rs1402436946 481 dbSNP
rs995824939 485 dbSNP
rs1006595976 488 dbSNP
rs1198472493 489 dbSNP
rs1022972390 490 dbSNP
rs1028642152 491 dbSNP
rs954500633 497 dbSNP
rs116386619 499 dbSNP
rs1260587286 500 dbSNP
rs1205608757 503 dbSNP
rs1217108790 510 dbSNP
rs1319299033 515 dbSNP
rs1261639370 523 dbSNP
rs924137541 526 dbSNP
rs1223306155 532 dbSNP
rs1002937271 536 dbSNP
rs1284813941 538 dbSNP
rs1397526380 540 dbSNP
rs957084035 544 dbSNP
rs989718514 545 dbSNP
rs573795706 552 dbSNP
rs1357406240 554 dbSNP
rs948281668 555 dbSNP
rs7571331 556 dbSNP
rs771352993 566 dbSNP
rs1261118842 568 dbSNP
rs927919646 578 dbSNP
rs1487110909 584 dbSNP
rs1975212 595 dbSNP
rs533138277 604 dbSNP
rs886309932 607 dbSNP
rs1224786182 610 dbSNP
rs1004706517 615 dbSNP
rs1037646206 619 dbSNP
rs1306601840 626 dbSNP
rs533788186 628 dbSNP
rs1378810344 632 dbSNP
rs564089991 637 dbSNP
rs1453521733 640 dbSNP
rs1301615245 641 dbSNP
rs868110450 646 dbSNP
rs1028667542 647 dbSNP
rs1408007512 655 dbSNP
rs954489293 660 dbSNP
rs1008688532 661 dbSNP
rs1460642429 666 dbSNP
rs1372746256 670 dbSNP
rs1171182232 671 dbSNP
rs1385015224 687 dbSNP
rs1031153734 690 dbSNP
rs528394486 698 dbSNP
rs1382908815 705 dbSNP
rs989623835 709 dbSNP
rs967709079 711 dbSNP
rs1306675312 713 dbSNP
rs1194488308 720 dbSNP
rs777631307 723 dbSNP
rs1251560855 731 dbSNP
rs192685605 741 dbSNP
rs1239565708 745 dbSNP
rs1262390258 746 dbSNP
rs1482275082 747 dbSNP
rs769872305 749 dbSNP
rs775466551 750 dbSNP
rs1246612698 751 dbSNP
rs1461852312 753 dbSNP
rs1185598816 754 dbSNP
rs887992073 761 dbSNP
rs942331560 764 dbSNP
rs980949666 767 dbSNP
rs1390640524 768 dbSNP
rs1395961747 770 dbSNP
rs761745722 772 dbSNP
rs928024891 777 dbSNP
rs1366041348 778 dbSNP
rs1363786698 779 dbSNP
rs114993459 782 dbSNP
rs1445742167 799 dbSNP
rs1176346111 810 dbSNP
rs1180057130 816 dbSNP
rs905902651 818 dbSNP
rs573611246 827 dbSNP
rs1489756136 835 dbSNP
rs1406128508 849 dbSNP
rs1002842304 852 dbSNP
rs1222619890 855 dbSNP
rs1361460587 864 dbSNP
rs1035714075 867 dbSNP
rs1237988982 873 dbSNP
rs1454140899 877 dbSNP
rs1328846850 880 dbSNP
rs1308968722 882 dbSNP
rs1411865572 886 dbSNP
rs1343926279 892 dbSNP
rs1302574146 896 dbSNP
rs891884997 903 dbSNP
rs1393428253 905 dbSNP
rs1372210251 934 dbSNP
rs982917027 936 dbSNP
rs1364731701 941 dbSNP
rs1308954882 944 dbSNP
rs1479237277 947 dbSNP
rs1267779141 958 dbSNP
rs908603252 964 dbSNP
rs1038554118 968 dbSNP
rs1490701800 970 dbSNP
rs1259129799 971 dbSNP
rs530075320 975 dbSNP
rs1310222554 978 dbSNP
rs548161974 983 dbSNP
rs569843970 987 dbSNP
rs185028965 990 dbSNP
rs1262250205 991 dbSNP
rs1221487108 995 dbSNP
rs898966924 998 dbSNP
rs1321621232 1000 dbSNP
rs200004019 1005 dbSNP
rs187534161 1014 dbSNP
rs965012290 1014 dbSNP
rs976431233 1017 dbSNP
rs1382120992 1023 dbSNP
rs1161781490 1025 dbSNP
rs1386369744 1025 dbSNP
rs918300332 1026 dbSNP
rs1428096518 1030 dbSNP
rs1050770658 1034 dbSNP
rs1176694699 1041 dbSNP
rs1478844508 1042 dbSNP
rs1205691635 1046 dbSNP
rs1191910636 1050 dbSNP
rs890155819 1051 dbSNP
rs1231390056 1052 dbSNP
rs929748733 1064 dbSNP
rs551129328 1079 dbSNP
rs1460714374 1087 dbSNP
rs1008959379 1088 dbSNP
rs570917458 1094 dbSNP
rs942262624 1095 dbSNP
rs535331393 1105 dbSNP
rs1010577693 1106 dbSNP
rs760538280 1107 dbSNP
rs969525127 1112 dbSNP
rs1405808147 1125 dbSNP
rs868736287 1126 dbSNP
rs1337851093 1129 dbSNP
rs938646738 1146 dbSNP
rs753420947 1149 dbSNP
rs981023180 1150 dbSNP
rs1035669765 1151 dbSNP
rs1475458320 1157 dbSNP
rs553752303 1162 dbSNP
rs1181663237 1163 dbSNP
rs568764262 1166 dbSNP
rs12328856 1167 dbSNP
rs1205380317 1172 dbSNP
rs1444290185 1178 dbSNP
rs983207076 1191 dbSNP
rs1299556390 1194 dbSNP
rs1340142988 1195 dbSNP
rs908511618 1196 dbSNP
rs1274797486 1197 dbSNP
rs1244383763 1200 dbSNP
rs1382765549 1213 dbSNP
rs1450675848 1215 dbSNP
rs1365164410 1217 dbSNP
rs1021860906 1219 dbSNP
rs1327779616 1220 dbSNP
rs1283811819 1229 dbSNP
rs1410240725 1229 dbSNP
rs904383163 1235 dbSNP
rs1161171033 1238 dbSNP
rs1007146923 1240 dbSNP
rs941437285 1242 dbSNP
rs1183336992 1257 dbSNP
rs556965625 1259 dbSNP
rs1468423971 1263 dbSNP
rs1270895616 1265 dbSNP
rs191320983 1266 dbSNP
rs920467329 1269 dbSNP
rs1483530116 1273 dbSNP
rs10193936 1277 dbSNP
rs1050386673 1280 dbSNP
rs997816196 1281 dbSNP
rs1205443778 1282 dbSNP
rs1253323613 1284 dbSNP
rs1489956439 1286 dbSNP
rs566353498 1292 dbSNP
rs924889059 1293 dbSNP
rs951202363 1294 dbSNP
rs573000030 1297 dbSNP
rs1270230694 1298 dbSNP
rs1300686090 1299 dbSNP
rs1481738921 1300 dbSNP
rs1192146021 1301 dbSNP
rs62128385 1304 dbSNP
rs1254286628 1305 dbSNP
rs1460451801 1305 dbSNP
rs1473013819 1305 dbSNP
rs75851338 1305 dbSNP
rs777288761 1305 dbSNP
rs80139146 1306 dbSNP
rs1428619101 1311 dbSNP
rs1172058716 1317 dbSNP
rs944609159 1317 dbSNP
rs1347797401 1318 dbSNP
rs867049490 1327 dbSNP
rs183855192 1328 dbSNP
rs1367219480 1331 dbSNP
rs1397992496 1332 dbSNP
rs1269558559 1333 dbSNP
rs983909728 1337 dbSNP
rs892091664 1347 dbSNP
rs148229756 1354 dbSNP
rs1404017181 1363 dbSNP
rs909636836 1364 dbSNP
rs1294820938 1365 dbSNP
rs1010649656 1366 dbSNP
rs1428529818 1371 dbSNP
rs138284304 1388 dbSNP
rs533598244 1389 dbSNP
rs149583653 1390 dbSNP
rs1222201397 1395 dbSNP
rs927516715 1399 dbSNP
rs1174529108 1418 dbSNP
rs1480269788 1419 dbSNP
rs1035171689 1420 dbSNP
rs961262464 1423 dbSNP
rs541844736 1436 dbSNP
rs1193038979 1453 dbSNP
rs1485149002 1453 dbSNP
rs1209677712 1470 dbSNP
rs1242074327 1470 dbSNP
rs1466537571 1473 dbSNP
rs1004436320 1492 dbSNP
rs1490944494 1494 dbSNP
rs1015607727 1499 dbSNP
rs962701566 1502 dbSNP
rs974190557 1509 dbSNP
rs1361107384 1523 dbSNP
rs189306643 1525 dbSNP
rs1485889887 1528 dbSNP
rs913257897 1531 dbSNP
rs531035796 1532 dbSNP
rs575783659 1534 dbSNP
rs552346984 1535 dbSNP
rs1386822195 1575 dbSNP
rs1178272257 1576 dbSNP
rs1417660520 1577 dbSNP
rs954085788 1597 dbSNP
rs1419351727 1600 dbSNP
rs1189774559 1603 dbSNP
rs1345760085 1608 dbSNP
rs1431567534 1612 dbSNP
rs1290771370 1614 dbSNP
rs1241666011 1618 dbSNP
rs986380277 1627 dbSNP
rs1483350380 1628 dbSNP
rs867136597 1629 dbSNP
rs904622616 1629 dbSNP
rs879682815 1633 dbSNP
rs1306402398 1637 dbSNP
rs10186142 1643 dbSNP
rs1230480088 1644 dbSNP
rs944622794 1648 dbSNP
rs1052359593 1652 dbSNP
rs901081413 1653 dbSNP
rs1222462696 1655 dbSNP
rs878892746 1656 dbSNP
rs1380072498 1657 dbSNP
rs998141541 1672 dbSNP
rs1284174779 1688 dbSNP
rs1460708351 1690 dbSNP
rs1025295534 1701 dbSNP
rs13408095 1705 dbSNP
rs946371982 1734 dbSNP
rs1383957990 1741 dbSNP
rs1043480453 1753 dbSNP
rs1424774081 1759 dbSNP
rs146102654 1766 dbSNP
rs1244652243 1769 dbSNP
rs1468384056 1775 dbSNP
rs1274703488 1778 dbSNP
rs181930608 1790 dbSNP
rs1290948806 1795 dbSNP
rs1245169892 1800 dbSNP
rs980233933 1805 dbSNP
rs561436782 1808 dbSNP
rs1389870255 1809 dbSNP
rs896614859 1810 dbSNP
rs1004913832 1811 dbSNP
rs757986368 1813 dbSNP
rs530109676 1816 dbSNP
rs993071892 1817 dbSNP
rs913484980 1820 dbSNP
rs1458927569 1826 dbSNP
rs995524301 1849 dbSNP
rs1157437227 1852 dbSNP
rs1418098863 1853 dbSNP
rs1452069425 1856 dbSNP
rs550600746 1860 dbSNP
rs1252128799 1863 dbSNP
rs1183625304 1868 dbSNP
rs1489644016 1869 dbSNP
rs1028298352 1871 dbSNP
rs1210352712 1880 dbSNP
rs946042534 1881 dbSNP
rs954275331 1887 dbSNP
rs1043451927 1905 dbSNP
rs986861995 1909 dbSNP
rs1440451607 1912 dbSNP
rs1279274696 1916 dbSNP
rs911752734 1918 dbSNP
rs1343715501 1923 dbSNP
rs1323016615 1924 dbSNP
rs1387836094 1929 dbSNP
rs926024528 1933 dbSNP
rs1287446282 1938 dbSNP
rs1457045233 1945 dbSNP
rs942795080 1951 dbSNP
rs1160905329 1963 dbSNP
rs965898764 1967 dbSNP
rs988491068 1972 dbSNP
rs185155788 1973 dbSNP
rs1204269653 1975 dbSNP
rs539410164 1975 dbSNP
rs1046991146 1976 dbSNP
rs746989606 1977 dbSNP
rs1435778442 1980 dbSNP
rs1230430212 1985 dbSNP
rs1180665291 1987 dbSNP
rs557615046 1988 dbSNP
rs1017046173 1989 dbSNP
rs1333268393 1992 dbSNP
rs904940740 2000 dbSNP
rs1197161257 2002 dbSNP
rs572873741 2003 dbSNP
rs1389833382 2004 dbSNP
rs144052229 2006 dbSNP
rs190397606 2008 dbSNP
rs181219623 2009 dbSNP
rs1408938433 2015 dbSNP
rs1467861426 2022 dbSNP
rs555108404 2023 dbSNP
rs937763410 2056 dbSNP
rs140020517 2057 dbSNP
rs560099083 2068 dbSNP
rs1056216125 2071 dbSNP
rs960171600 2072 dbSNP
rs560588778 2083 dbSNP
rs544053527 2086 dbSNP
rs1370900172 2087 dbSNP
rs940191799 2088 dbSNP
rs781563742 2092 dbSNP
rs1450053675 2094 dbSNP
rs563708265 2099 dbSNP
rs968040803 2108 dbSNP
rs1201559143 2123 dbSNP
rs1460117559 2128 dbSNP
rs1278193015 2132 dbSNP
rs1201046777 2149 dbSNP
rs978776101 2151 dbSNP
rs1404454446 2158 dbSNP
rs1228269048 2161 dbSNP
rs898761074 2161 dbSNP
rs925984720 2172 dbSNP
rs942742765 2175 dbSNP
rs1339457974 2180 dbSNP
rs1408353573 2192 dbSNP
rs975522850 2193 dbSNP
rs1328469218 2197 dbSNP
rs995723084 2199 dbSNP
rs1028329325 2204 dbSNP
rs575588175 2209 dbSNP
rs887023658 2214 dbSNP
rs889790302 2219 dbSNP
rs1472351115 2220 dbSNP
rs141994063 2222 dbSNP
rs1008762840 2226 dbSNP
rs1019681878 2227 dbSNP
rs966294866 2242 dbSNP
rs987954180 2247 dbSNP
rs1020716793 2248 dbSNP
rs1336886179 2253 dbSNP
rs941316659 2264 dbSNP
rs967946734 2272 dbSNP
rs1244493703 2274 dbSNP
rs1356091665 2275 dbSNP
rs1038023227 2280 dbSNP
rs1449742349 2286 dbSNP
rs904898759 2288 dbSNP
rs979280071 2294 dbSNP
rs1273300232 2315 dbSNP
rs1001840609 2320 dbSNP
rs1372264453 2321 dbSNP
rs573350670 2328 dbSNP
rs546173516 2334 dbSNP
rs926323008 2336 dbSNP
rs1414211762 2340 dbSNP
rs896241153 2343 dbSNP
rs1014341136 2344 dbSNP
rs527896198 2346 dbSNP
rs1181478758 2364 dbSNP
rs967652616 2366 dbSNP
rs992348203 2368 dbSNP
rs979446588 2371 dbSNP
rs1033001224 2372 dbSNP
rs1290979711 2374 dbSNP
rs186666356 2388 dbSNP
rs1474478990 2393 dbSNP
rs917658336 2395 dbSNP
rs190181817 2396 dbSNP
rs939735226 2399 dbSNP
rs1287335127 2403 dbSNP
rs549551913 2413 dbSNP
rs898623676 2414 dbSNP
rs1351794692 2424 dbSNP
rs1300787727 2436 dbSNP
rs746054284 2437 dbSNP
rs1049997030 2439 dbSNP
rs889812831 2440 dbSNP
rs1411034134 2441 dbSNP
rs982634394 2447 dbSNP
rs1414251560 2449 dbSNP
rs532303311 2449 dbSNP
rs528553542 2478 dbSNP
rs1488416181 2479 dbSNP
rs1247803927 2482 dbSNP
rs1224160898 2485 dbSNP
rs1432016554 2494 dbSNP
rs1267967949 2495 dbSNP
rs1208932779 2503 dbSNP
rs547240385 2506 dbSNP
rs1330833237 2514 dbSNP
rs756155067 2515 dbSNP
rs1218136542 2517 dbSNP
rs1368144923 2519 dbSNP
rs1276530800 2527 dbSNP
rs1365358271 2534 dbSNP
rs1428631145 2544 dbSNP
rs1387601786 2546 dbSNP
rs780126886 2553 dbSNP
rs1457924988 2566 dbSNP
rs1304092480 2569 dbSNP
rs1391151297 2574 dbSNP
rs1324124850 2589 dbSNP
rs1038667707 2590 dbSNP
rs1432683435 2591 dbSNP
rs891892935 2600 dbSNP
rs1448246035 2604 dbSNP
rs749313373 2605 dbSNP
rs1270404830 2616 dbSNP
rs768844989 2620 dbSNP
rs1341108182 2628 dbSNP
rs1209061497 2635 dbSNP
rs1020747767 2637 dbSNP
rs1312261676 2640 dbSNP
rs562219837 2648 dbSNP
rs1226059514 2650 dbSNP
rs1364405899 2651 dbSNP
rs1437012229 2656 dbSNP
rs979353873 2656 dbSNP
rs1301299591 2658 dbSNP
rs1243335781 2664 dbSNP
rs180714237 2668 dbSNP
rs1178383829 2673 dbSNP
rs1428326206 2674 dbSNP
rs1390133651 2680 dbSNP
rs760740353 2684 dbSNP
rs1451705725 2699 dbSNP
rs1254596950 2700 dbSNP
rs1180890961 2702 dbSNP
rs991850665 2708 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggucgGGACGUGUGGAGGGg 5'
               ||| | ::|||||| 
Target 5' uacaaCCU-C-UGCCUCCCa 3'
16 - 33
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000344420.5 | 3UTR | AUCUCGGCGGCUCACUACAACCUCUGCCUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
495 hsa-miR-6799-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057844 SLC30A7 solute carrier family 30 member 7 2 2
MIRT180622 CRY2 cryptochrome circadian clock 2 2 2
MIRT254627 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT294657 ZNF548 zinc finger protein 548 2 2
MIRT386443 CCL22 C-C motif chemokine ligand 22 2 2
MIRT441466 BEST3 bestrophin 3 2 2
MIRT446753 ZNF491 zinc finger protein 491 2 2
MIRT449226 RAD51B RAD51 paralog B 2 2
MIRT451096 ZNF584 zinc finger protein 584 2 2
MIRT451563 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451685 C1RL complement C1r subcomponent like 2 2
MIRT451739 CES3 carboxylesterase 3 2 2
MIRT451761 ZNF611 zinc finger protein 611 2 6
MIRT452415 QDPR quinoid dihydropteridine reductase 2 2
MIRT452566 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452860 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452925 DISC1 disrupted in schizophrenia 1 2 2
MIRT453051 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453102 HOXC4 homeobox C4 2 2
MIRT453256 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453299 ZNF394 zinc finger protein 394 2 2
MIRT453474 PITPNM3 PITPNM family member 3 2 2
MIRT453542 PRR12 proline rich 12 2 2
MIRT453597 ZNF557 zinc finger protein 557 2 2
MIRT453798 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453939 XRCC6 X-ray repair cross complementing 6 2 6
MIRT453990 CECR1 adenosine deaminase 2 2 2
MIRT454087 TMEM209 transmembrane protein 209 2 2
MIRT454658 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454756 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT454846 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT455122 TBC1D25 TBC1 domain family member 25 2 2
MIRT455164 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455312 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456472 SERAC1 serine active site containing 1 2 2
MIRT456555 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456640 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456721 TMEM239 transmembrane protein 239 2 4
MIRT457155 MXRA7 matrix remodeling associated 7 2 2
MIRT457489 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457689 ZNF587 zinc finger protein 587 2 2
MIRT457787 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT458001 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458133 TLCD2 TLC domain containing 2 2 2
MIRT458494 MARVELD2 MARVEL domain containing 2 2 2
MIRT458929 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459029 ZNF490 zinc finger protein 490 2 4
MIRT459121 FADS6 fatty acid desaturase 6 2 2
MIRT459319 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459363 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459418 FAM83B family with sequence similarity 83 member B 2 2
MIRT459980 RFT1 RFT1 homolog 2 2
MIRT460139 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460208 FGFR4 fibroblast growth factor receptor 4 2 2
MIRT460443 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460484 FAM105A family with sequence similarity 105 member A 2 6
MIRT460589 FEM1A fem-1 homolog A 2 2
MIRT460647 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460924 NOA1 nitric oxide associated 1 2 4
MIRT461077 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461161 SLC11A2 solute carrier family 11 member 2 2 6
MIRT461456 SLC19A3 solute carrier family 19 member 3 2 6
MIRT461570 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT461594 DPH2 DPH2 homolog 2 2
MIRT461858 ZNF317 zinc finger protein 317 2 2
MIRT461950 C3 complement C3 2 4
MIRT462182 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462449 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT462769 ZNF8 zinc finger protein 8 2 2
MIRT463134 ZNF451 zinc finger protein 451 2 8
MIRT463856 WNT7B Wnt family member 7B 2 2
MIRT463984 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT464254 VCL vinculin 2 2
MIRT464315 UST uronyl 2-sulfotransferase 2 2
MIRT464416 UNC13A unc-13 homolog A 2 6
MIRT464820 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465465 TOR2A torsin family 2 member A 2 2
MIRT466079 TMEM184C transmembrane protein 184C 2 2
MIRT466522 TBXA2R thromboxane A2 receptor 2 2
MIRT467005 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467076 SRRD SRR1 domain containing 2 2
MIRT468573 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT469559 RARA retinoic acid receptor alpha 2 2
MIRT469745 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470769 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470881 PLXND1 plexin D1 2 2
MIRT470981 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471221 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471251 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471301 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471470 PDE7B phosphodiesterase 7B 2 2
MIRT471769 NUP43 nucleoporin 43 2 4
MIRT471824 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472816 MTMR10 myotubularin related protein 10 2 6
MIRT473071 MORN4 MORN repeat containing 4 2 2
MIRT473493 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT473509 MAZ MYC associated zinc finger protein 2 2
MIRT473570 MAT2A methionine adenosyltransferase 2A 2 6
MIRT473995 LRRC20 leucine rich repeat containing 20 2 2
MIRT474532 KLHDC8A kelch domain containing 8A 2 2
MIRT474996 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475368 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT475750 HDLBP high density lipoprotein binding protein 2 2
MIRT476796 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477072 FAM208A family with sequence similarity 208 member A 2 6
MIRT477302 EPHB2 EPH receptor B2 2 2
MIRT477947 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478288 DDX19A DEAD-box helicase 19A 2 4
MIRT478314 DDN dendrin 2 2
MIRT478475 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478626 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478839 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479011 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479169 CLSPN claspin 2 2
MIRT479519 CDCA4 cell division cycle associated 4 2 2
MIRT481379 ATG12 autophagy related 12 2 2
MIRT481731 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482387 AEN apoptosis enhancing nuclease 2 2
MIRT482455 ADAR adenosine deaminase, RNA specific 2 4
MIRT483024 KHSRP KH-type splicing regulatory protein 2 4
MIRT483805 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT484338 EPN1 epsin 1 2 4
MIRT486088 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486307 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486651 ZNF28 zinc finger protein 28 2 2
MIRT486887 TSPYL4 TSPY like 4 2 2
MIRT487127 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487548 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487677 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489255 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489279 RBM8A RNA binding motif protein 8A 2 8
MIRT489399 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489502 CRLF3 cytokine receptor like factor 3 2 4
MIRT489695 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT489775 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489919 RTKN rhotekin 2 2
MIRT490174 TMEM63C transmembrane protein 63C 2 2
MIRT490523 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT491202 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491261 DHX40 DEAH-box helicase 40 2 2
MIRT491390 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491550 YAE1D1 Yae1 domain containing 1 2 2
MIRT492724 PHF12 PHD finger protein 12 2 2
MIRT493873 FAM73B mitoguardin 2 2 4
MIRT493891 FAM43A family with sequence similarity 43 member A 2 4
MIRT494464 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT498589 KRT8 keratin 8 2 2
MIRT498728 SNTN sentan, cilia apical structure protein 2 6
MIRT499984 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT501424 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT503419 SLC25A45 solute carrier family 25 member 45 2 6
MIRT504303 ZNF280B zinc finger protein 280B 2 2
MIRT507978 BCL2L13 BCL2 like 13 2 4
MIRT508891 METTL14 methyltransferase like 14 2 2
MIRT509629 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510109 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510140 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510306 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510625 TMEM167A transmembrane protein 167A 2 4
MIRT511022 NRF1 nuclear respiratory factor 1 2 2
MIRT512225 ATXN3 ataxin 3 2 8
MIRT514345 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515018 SUMF2 sulfatase modifying factor 2 2 2
MIRT515136 ZNF799 zinc finger protein 799 2 4
MIRT515251 DUSP28 dual specificity phosphatase 28 2 2
MIRT516209 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516672 ZNF860 zinc finger protein 860 2 4
MIRT516969 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT518379 ZNF250 zinc finger protein 250 2 2
MIRT518939 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519681 ZNF70 zinc finger protein 70 2 2
MIRT519910 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT519949 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520325 UBXN2A UBX domain protein 2A 2 2
MIRT520614 TMEM41B transmembrane protein 41B 2 2
MIRT520667 TMEM11 transmembrane protein 11 2 2
MIRT520857 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521447 RAD51 RAD51 recombinase 2 2
MIRT521562 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT522335 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522913 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523678 FOPNL FGFR1OP N-terminal like 2 2
MIRT523721 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523873 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524054 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524176 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524857 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT524933 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT525684 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT526834 PHC1 polyhomeotic homolog 1 2 2
MIRT540684 BMP3 bone morphogenetic protein 3 2 2
MIRT541759 KLF8 Kruppel like factor 8 2 2
MIRT550715 PMPCA peptidase, mitochondrial processing alpha subunit 2 6
MIRT561754 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562826 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562906 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564456 SLC35E2 solute carrier family 35 member E2 2 5
MIRT565231 TRAF6 TNF receptor associated factor 6 2 2
MIRT569117 ONECUT3 one cut homeobox 3 2 2
MIRT569229 SUSD1 sushi domain containing 1 2 2
MIRT569521 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570280 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570851 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571319 TPCN2 two pore segment channel 2 2 2
MIRT572081 EXOC8 exocyst complex component 8 2 2
MIRT572123 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573489 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573655 HES6 hes family bHLH transcription factor 6 2 2
MIRT574348 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576505 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608044 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT609312 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT613665 KIAA1210 KIAA1210 2 2
MIRT615639 ATF6 activating transcription factor 6 2 2
MIRT618578 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618866 MBL2 mannose binding lectin 2 2 2
MIRT618966 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619177 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620303 AQP6 aquaporin 6 2 2
MIRT620688 RFTN2 raftlin family member 2 2 2
MIRT621643 UBXN2B UBX domain protein 2B 2 2
MIRT622001 STK4 serine/threonine kinase 4 2 2
MIRT622426 NUDT19 nudix hydrolase 19 2 2
MIRT622577 PRRG4 proline rich and Gla domain 4 2 2
MIRT622808 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624790 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624972 ZNF665 zinc finger protein 665 2 4
MIRT625483 SMAD9 SMAD family member 9 2 2
MIRT626601 ACAA2 acetyl-CoA acyltransferase 2 2 2
MIRT626713 TRIM65 tripartite motif containing 65 2 2
MIRT626979 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627491 STRIP2 striatin interacting protein 2 2 2
MIRT628508 ZNF878 zinc finger protein 878 2 2
MIRT628538 ZNF701 zinc finger protein 701 2 2
MIRT628595 TMEM251 transmembrane protein 251 2 2
MIRT628822 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628901 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628963 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629013 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629064 KIF1C kinesin family member 1C 2 2
MIRT629194 PAPOLA poly(A) polymerase alpha 2 2
MIRT629350 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629452 WIZ widely interspaced zinc finger motifs 2 2
MIRT629700 XKR4 XK related 4 2 2
MIRT629742 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629901 SPATA5 spermatogenesis associated 5 2 2
MIRT629958 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630028 MTL5 testis expressed metallothionein like protein 2 2
MIRT630394 MYH9 myosin heavy chain 9 2 4
MIRT631137 SYNJ2 synaptojanin 2 2 2
MIRT631388 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631475 KLHL21 kelch like family member 21 2 2
MIRT631563 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631620 PCDHB11 protocadherin beta 11 2 2
MIRT631939 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632450 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632660 NAV1 neuron navigator 1 2 2
MIRT632745 MED28 mediator complex subunit 28 2 2
MIRT632835 IGF1 insulin like growth factor 1 2 2
MIRT632914 FRRS1 ferric chelate reductase 1 2 2
MIRT633034 DNAL1 dynein axonemal light chain 1 2 2
MIRT633385 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633445 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633868 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT633913 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT633955 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634047 NUP155 nucleoporin 155 2 2
MIRT634271 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634378 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634440 PDE7A phosphodiesterase 7A 2 2
MIRT634577 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT634701 DSEL dermatan sulfate epimerase-like 2 2
MIRT634773 CD3D CD3d molecule 2 2
MIRT635029 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT636075 ZNF280C zinc finger protein 280C 2 2
MIRT636705 ARSK arylsulfatase family member K 2 2
MIRT637444 ZNF324B zinc finger protein 324B 2 2
MIRT637587 PLD6 phospholipase D family member 6 2 2
MIRT637677 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT638358 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638601 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638828 CRTAP cartilage associated protein 2 2
MIRT638882 CEP97 centrosomal protein 97 2 4
MIRT639659 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640264 FANCA Fanconi anemia complementation group A 2 2
MIRT644998 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645064 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646954 UPK3BL uroplakin 3B like 1 2 2
MIRT648304 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649048 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649890 SLFN12L schlafen family member 12 like 2 2
MIRT650201 DOCK7 dedicator of cytokinesis 7 2 2
MIRT652051 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT654794 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655926 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT657717 GPC4 glypican 4 2 2
MIRT659306 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659848 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT661312 CPM carboxypeptidase M 2 2
MIRT661480 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661911 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT661978 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 4
MIRT662071 ZNF284 zinc finger protein 284 2 2
MIRT662497 ANGPT4 angiopoietin 4 2 2
MIRT662666 LRRC47 leucine rich repeat containing 47 2 2
MIRT663171 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663382 ZNF770 zinc finger protein 770 2 4
MIRT663997 WDR75 WD repeat domain 75 2 2
MIRT664164 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT664494 POLR3K RNA polymerase III subunit K 2 2
MIRT665062 CCDC77 coiled-coil domain containing 77 2 2
MIRT665085 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665722 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665927 TBC1D19 TBC1 domain family member 19 2 4
MIRT666094 SSR1 signal sequence receptor subunit 1 2 2
MIRT666847 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667387 MOB1B MOB kinase activator 1B 2 2
MIRT667580 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667901 ING1 inhibitor of growth family member 1 2 2
MIRT667982 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668202 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668283 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668389 FAT3 FAT atypical cadherin 3 2 2
MIRT669002 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669456 ATL3 atlastin GTPase 3 2 2
MIRT669489 ARL4C ADP ribosylation factor like GTPase 4C 2 2
MIRT669664 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669894 KIAA0754 KIAA0754 2 4
MIRT669980 SSR3 signal sequence receptor subunit 3 2 2
MIRT670157 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670242 TRIM13 tripartite motif containing 13 2 2
MIRT670279 CBY3 chibby family member 3 2 2
MIRT670360 ULBP3 UL16 binding protein 3 2 4
MIRT670632 BVES blood vessel epicardial substance 2 2
MIRT670736 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670775 TRIM66 tripartite motif containing 66 2 2
MIRT670918 DESI1 desumoylating isopeptidase 1 2 2
MIRT671221 CLSTN1 calsyntenin 1 2 2
MIRT671370 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT671403 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671433 TOX4 TOX high mobility group box family member 4 2 2
MIRT671658 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT672040 SMTNL2 smoothelin like 2 2 2
MIRT672142 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672403 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672577 RNF24 ring finger protein 24 2 2
MIRT672798 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673204 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673377 ZNF124 zinc finger protein 124 2 2
MIRT673501 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673858 CAPN7 calpain 7 2 2
MIRT673932 ZNF500 zinc finger protein 500 2 2
MIRT673987 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674087 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674129 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674303 THAP5 THAP domain containing 5 2 2
MIRT674375 POLR3D RNA polymerase III subunit D 2 2
MIRT674647 NKRF NFKB repressing factor 2 2
MIRT674668 PLCE1 phospholipase C epsilon 1 2 2
MIRT674784 NPR1 natriuretic peptide receptor 1 2 2
MIRT674898 RASSF9 Ras association domain family member 9 2 2
MIRT675022 SNX1 sorting nexin 1 2 2
MIRT675347 KLHL26 kelch like family member 26 2 2
MIRT675421 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675502 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675742 AHR aryl hydrocarbon receptor 2 2
MIRT675866 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675996 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676218 TMEM91 transmembrane protein 91 2 2
MIRT677304 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677835 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT677873 ABI2 abl interactor 2 2 2
MIRT677971 ITGB3 integrin subunit beta 3 2 2
MIRT678181 CRCP CGRP receptor component 2 2
MIRT678279 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679466 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679518 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679918 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680035 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680251 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680284 AKIP1 A-kinase interacting protein 1 2 2
MIRT680504 PRIM2 DNA primase subunit 2 2 2
MIRT680634 KIAA1456 KIAA1456 2 2
MIRT680824 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680876 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT681003 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681045 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681125 INTS7 integrator complex subunit 7 2 2
MIRT681163 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681225 DUSP19 dual specificity phosphatase 19 2 2
MIRT681308 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681345 BRI3BP BRI3 binding protein 2 2
MIRT681612 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681782 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT682088 ITGA3 integrin subunit alpha 3 2 4
MIRT682141 SMS spermine synthase 2 2
MIRT682167 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682224 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682347 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT682371 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682540 EXOSC2 exosome component 2 2 2
MIRT682625 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683546 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT683647 ZNF695 zinc finger protein 695 2 2
MIRT684446 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684860 ZNF749 zinc finger protein 749 2 2
MIRT684960 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685051 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685099 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685814 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685915 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686669 TMEM120B transmembrane protein 120B 2 2
MIRT686865 SLC25A32 solute carrier family 25 member 32 2 2
MIRT686959 SFT2D2 SFT2 domain containing 2 2 2
MIRT687122 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687743 KIAA1328 KIAA1328 2 2
MIRT688066 GLUL glutamate-ammonia ligase 2 2
MIRT688773 CDH7 cadherin 7 2 2
MIRT689688 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689743 PRR13 proline rich 13 2 2
MIRT689939 MANSC1 MANSC domain containing 1 2 2
MIRT690096 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690194 C5orf45 MRN complex interacting protein 2 2
MIRT690252 CAMLG calcium modulating ligand 2 2
MIRT690423 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT691115 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691235 DFNB59 pejvakin 2 2
MIRT691302 ZNF681 zinc finger protein 681 2 2
MIRT691371 GP5 glycoprotein V platelet 2 2
MIRT691806 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692150 CEP104 centrosomal protein 104 2 2
MIRT692351 AGTRAP angiotensin II receptor associated protein 2 2
MIRT692579 NCMAP non-compact myelin associated protein 2 2
MIRT692653 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692749 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693098 SCNM1 sodium channel modifier 1 2 2
MIRT693300 SYTL3 synaptotagmin like 3 2 2
MIRT693393 ZNF460 zinc finger protein 460 2 2
MIRT693491 MOB3A MOB kinase activator 3A 2 2
MIRT693538 ZNF708 zinc finger protein 708 2 2
MIRT693566 PIGR polymeric immunoglobulin receptor 2 2
MIRT694378 MTA1 metastasis associated 1 2 2
MIRT694493 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694738 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT695076 ZNF17 zinc finger protein 17 2 2
MIRT695402 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695460 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695727 ZNF117 zinc finger protein 117 2 2
MIRT695902 MED16 mediator complex subunit 16 2 2
MIRT696266 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696567 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696649 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696795 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696825 PLLP plasmolipin 2 2
MIRT696969 CCDC80 coiled-coil domain containing 80 2 2
MIRT697089 GPKOW G-patch domain and KOW motifs 2 2
MIRT697167 INMT indolethylamine N-methyltransferase 2 2
MIRT697210 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697336 ZNF641 zinc finger protein 641 2 2
MIRT697586 YME1L1 YME1 like 1 ATPase 2 2
MIRT698623 TES testin LIM domain protein 2 2
MIRT698954 SPAST spastin 2 2
MIRT699088 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699436 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699558 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700330 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700362 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700463 PURB purine rich element binding protein B 2 2
MIRT701684 MYADM myeloid associated differentiation marker 2 2
MIRT701762 MSL2 MSL complex subunit 2 2 2
MIRT703183 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703210 GOLGA3 golgin A3 2 2
MIRT703366 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703430 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703606 FBXO45 F-box protein 45 2 2
MIRT703705 FAM134A reticulophagy regulator family member 2 2 2
MIRT703815 EVI5 ecotropic viral integration site 5 2 2
MIRT703919 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704239 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704650 CLCC1 chloride channel CLIC like 1 2 2
MIRT705165 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705535 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705665 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706148 ZNF674 zinc finger protein 674 2 2
MIRT706477 SNX27 sorting nexin family member 27 2 2
MIRT706646 SMIM19 small integral membrane protein 19 2 2
MIRT708259 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708842 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710442 BTNL3 butyrophilin like 3 2 2
MIRT711331 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT712438 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT714990 TSPAN11 tetraspanin 11 2 2
MIRT717405 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT722229 ZNF503 zinc finger protein 503 2 2
MIRT725389 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6799-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6799-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6799-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6799-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6799-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-6799-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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