pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF212   
Synonyms C2H2-150, ZNF182, ZNFC150
Description zinc finger protein 212
Transcript NM_012256   
Expression
Putative miRNA Targets on ZNF212
3'UTR of ZNF212
(miRNA target sites are highlighted)
>ZNF212|NM_012256|3'UTR
   1 GGGTGCAGCCCCTCGCCCGTCTGGGGGATGGAGGGGGGTGGCATTGGTTCCCCCGAAGAGACACTGCAGTCAGGGACTGA
  81 GTTCTTCCTGAGGGCAGTTGTTTGTGATTGCCTTCCCTTGTCCCAGTACCAAGCCAAGCCCAAAGGCTGTCCTGAAAACC
 161 CTGTGGAAGAAGAGTCCAGGCCAGGTCTTCATCCTGCTGCCAAGTTTGCTGTTTCTTGGCACCTTCAGGTCTCTGGTTTT
 241 CTCATTCATGCCAATGCTTGTGGGCTGGGGTTGGCGTTCTGACCCCACAGGGACTGGTGGCTGGTTCCAGGGCTCGTCCC
 321 GGCATTTCATGTCTTCCCACGGGGTTGAGTCGGGCCATAGGGGTGAGCAGCTGCCTGGAAGAGTTCTGGGAAGTATAACC
 401 CTCCATTTTTTCTTGTTTTATAATCTCTTTGTTTAATAATAAGTAGAAGAAATAATTTAAATGAACTGCTTAGCCCTGCT
 481 CTGAAGAACCTTTTTTGGAATTAGATTTTAGTTGATTTTTTAAAGAATACAGCCCAACACTTGTTTTTTACATTTTAAGA
 561 GTTGTAGAAGTTGTTCCTAACTTGGGGACTGGACCTACCCTCTAGGAGGGAGTTGTTAATGGGGCTCTTTTAGCCCACTG
 641 ATGCTTACTTAGGCCGGAGAGCAGGGGACACGGTGCTAGGTTCCCTCGTGCAGTGCCTGGTGCTCTCAAATTGTCTCAAA
 721 AGGACCAAGAGGAAAAGAGTCGGAGGGGTAGACCCTGCAGCCCTGTTGAGAAGAAAGATTCCAGTGAAGTTGCTGATGGT
 801 ATGGCTGTGGTCTGGGACTTGCGGTGTCTCGGCATACCCCTCTCCTCTTCCCACCTCCTCCTGGCTATGTTCTGCAGCCT
 881 CCCAGAGTAGAAAACTACTTTGTTACTTAAGGTTGTTCACCTTGTACCAGTGGTTATTTGAGTTTGTTCCTATTACACCA
 961 ATCCTTACTTGAGGTGGTTCGGATTACAGTTTCCAAATGCATTCTGGGATTGCCTATTCCAGAGAGGGTACAGAAAAAGC
1041 ACACAGATGGCTTGTCTCAGGAGTGTTGAATGTGTGCCCCGCTGCTGTCTGGGGGGATGGGAGTGGGCTCTGGGGTCATA
1121 TGTGAACATCCCCTTGGATGATTTGCGGTTGCTTAGAATAAAACTTGCTACTAGCAAAAGAAAAAAAAAAAGTTAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauuCUGGUUCGGA-GGAAGGGa 5'
              | ::: | :| ||||||| 
Target 5' agttGTTTGTGATTGCCTTCCCt 3'
96 - 118 142.00 -13.90
2
miRNA  3' gaUUCUGGUUCGGAGGAAGGGa 5'
            ::|||::||  |:|||||: 
Target 5' caGGGACTGAG--TTCTTCCTg 3'
71 - 90 132.00 -15.10
3
miRNA  3' gauUCUGGUUCG-GAGGAAGGGa 5'
             | |||   | | :|||||| 
Target 5' ggcATACCCCTCTCCTCTTCCCa 3'
831 - 853 131.00 -14.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31507727 2 COSMIC
COSN30100351 16 COSMIC
COSN18731515 28 COSMIC
COSN30687363 39 COSMIC
COSN15590957 51 COSMIC
COSN31598610 78 COSMIC
COSN30172331 85 COSMIC
COSN32062454 147 COSMIC
COSN20104951 764 COSMIC
COSN16539077 785 COSMIC
COSN28201918 799 COSMIC
COSN31575355 981 COSMIC
COSN26563975 1009 COSMIC
COSN28708309 1023 COSMIC
COSN31586867 1050 COSMIC
COSN20167792 1098 COSMIC
COSN9976405 1111 COSMIC
COSN30177502 1163 COSMIC
COSN29064288 1192 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1484004874 4 dbSNP
rs757836820 6 dbSNP
rs781523529 7 dbSNP
rs372130773 8 dbSNP
rs755574850 9 dbSNP
rs375484849 10 dbSNP
rs368617784 11 dbSNP
rs768185466 14 dbSNP
rs371540048 15 dbSNP
rs1326125169 16 dbSNP
rs778049581 16 dbSNP
rs772085919 19 dbSNP
rs375757619 20 dbSNP
rs759709790 22 dbSNP
rs1299744328 24 dbSNP
rs765343645 25 dbSNP
rs775708479 29 dbSNP
rs767706740 33 dbSNP
rs763295065 35 dbSNP
rs764204182 36 dbSNP
rs751998051 37 dbSNP
rs1486400487 38 dbSNP
rs945694705 39 dbSNP
rs757525696 42 dbSNP
rs1464811242 47 dbSNP
rs1194772040 49 dbSNP
rs768036649 51 dbSNP
rs750868295 52 dbSNP
rs757765093 55 dbSNP
rs1026817648 56 dbSNP
rs1188423434 85 dbSNP
rs566094121 100 dbSNP
rs1474457899 101 dbSNP
rs895352219 109 dbSNP
rs879228430 111 dbSNP
rs1188864774 128 dbSNP
rs1463017655 130 dbSNP
rs1261689747 131 dbSNP
rs1203411406 133 dbSNP
rs535167307 134 dbSNP
rs557822648 135 dbSNP
rs906796039 139 dbSNP
rs952549441 140 dbSNP
rs994154670 144 dbSNP
rs1284233505 145 dbSNP
rs1454534148 152 dbSNP
rs867906677 153 dbSNP
rs1380459535 155 dbSNP
rs985527594 158 dbSNP
rs1335884557 160 dbSNP
rs781721573 164 dbSNP
rs1447236561 165 dbSNP
rs564058501 170 dbSNP
rs1408352704 175 dbSNP
rs952755011 179 dbSNP
rs1018341283 181 dbSNP
rs370457164 191 dbSNP
rs1005679448 198 dbSNP
rs965861056 212 dbSNP
rs879152486 216 dbSNP
rs1458486247 220 dbSNP
rs1234902009 221 dbSNP
rs1464744827 229 dbSNP
rs976737986 230 dbSNP
rs1436814752 231 dbSNP
rs571343369 238 dbSNP
rs1247493232 247 dbSNP
rs1357274910 255 dbSNP
rs748796197 261 dbSNP
rs963840338 265 dbSNP
rs768229306 272 dbSNP
rs935587743 276 dbSNP
rs1296202467 277 dbSNP
rs989730137 282 dbSNP
rs922522875 283 dbSNP
rs1354139825 287 dbSNP
rs374593842 290 dbSNP
rs967726687 294 dbSNP
rs977094885 295 dbSNP
rs1248729504 298 dbSNP
rs925659727 300 dbSNP
rs1418751278 302 dbSNP
rs1440778079 304 dbSNP
rs1410650174 305 dbSNP
rs935744313 307 dbSNP
rs868644783 308 dbSNP
rs1480128524 314 dbSNP
rs915392183 316 dbSNP
rs948195367 317 dbSNP
rs1045228147 319 dbSNP
rs927023967 321 dbSNP
rs938438739 322 dbSNP
rs1428500783 325 dbSNP
rs1318607258 337 dbSNP
rs1304669216 339 dbSNP
rs1222967407 341 dbSNP
rs537028163 342 dbSNP
rs1372962163 344 dbSNP
rs1284150526 350 dbSNP
rs1406934477 352 dbSNP
rs1056794517 353 dbSNP
rs896854527 358 dbSNP
rs994082748 364 dbSNP
rs760811028 371 dbSNP
rs1347431531 389 dbSNP
rs1157461132 391 dbSNP
rs948198810 396 dbSNP
rs1426239859 402 dbSNP
rs1047015494 406 dbSNP
rs114314835 421 dbSNP
rs1267590658 422 dbSNP
rs528065097 426 dbSNP
rs185954128 427 dbSNP
rs762972007 428 dbSNP
rs1214882720 429 dbSNP
rs753287658 430 dbSNP
rs1264701667 432 dbSNP
rs541709350 437 dbSNP
rs1018121655 442 dbSNP
rs1221144825 444 dbSNP
rs758912333 446 dbSNP
rs1005566541 449 dbSNP
rs1018333278 450 dbSNP
rs1287642391 463 dbSNP
rs1283266898 466 dbSNP
rs965456245 470 dbSNP
rs1230205851 472 dbSNP
rs1249994443 473 dbSNP
rs998710368 484 dbSNP
rs555580898 486 dbSNP
rs1053298 487 dbSNP
rs1178965300 507 dbSNP
rs1467957434 508 dbSNP
rs1428131675 510 dbSNP
rs189543106 522 dbSNP
rs1429763380 534 dbSNP
rs1258987857 535 dbSNP
rs1029931997 536 dbSNP
rs989677711 544 dbSNP
rs564156213 551 dbSNP
rs1201503926 552 dbSNP
rs1321756926 568 dbSNP
rs181910665 571 dbSNP
rs543465222 575 dbSNP
rs752000707 578 dbSNP
rs1478120042 595 dbSNP
rs1172376668 596 dbSNP
rs146444634 598 dbSNP
rs991132577 608 dbSNP
rs1461294131 612 dbSNP
rs1163542030 613 dbSNP
rs772937932 620 dbSNP
rs915631401 624 dbSNP
rs1450911764 626 dbSNP
rs1404979895 628 dbSNP
rs1168151755 644 dbSNP
rs1463141120 652 dbSNP
rs536115015 656 dbSNP
rs549402511 657 dbSNP
rs918247765 668 dbSNP
rs1445208169 670 dbSNP
rs1340543056 672 dbSNP
rs928162098 673 dbSNP
rs1293972068 679 dbSNP
rs1460714640 681 dbSNP
rs566308288 688 dbSNP
rs1047313245 689 dbSNP
rs766265846 698 dbSNP
rs1249736383 699 dbSNP
rs528638787 700 dbSNP
rs1048107159 701 dbSNP
rs888324952 702 dbSNP
rs1317764811 703 dbSNP
rs1244347729 709 dbSNP
rs1006818524 710 dbSNP
rs1039530791 714 dbSNP
rs1039742160 718 dbSNP
rs901039758 728 dbSNP
rs113505751 742 dbSNP
rs186134325 743 dbSNP
rs1424726165 745 dbSNP
rs956831380 749 dbSNP
rs902981165 756 dbSNP
rs11448412 761 dbSNP
rs397764728 761 dbSNP
rs1032866797 765 dbSNP
rs537116772 766 dbSNP
rs1421154041 774 dbSNP
rs1248686387 776 dbSNP
rs1022261992 789 dbSNP
rs1204600914 790 dbSNP
rs969606022 799 dbSNP
rs981031407 800 dbSNP
rs3087882 807 dbSNP
rs200841579 809 dbSNP
rs765262249 811 dbSNP
rs961193159 815 dbSNP
rs1022611205 819 dbSNP
rs1280557759 822 dbSNP
rs190602159 823 dbSNP
rs1422381564 824 dbSNP
rs1162468513 829 dbSNP
rs1300687808 830 dbSNP
rs138956229 831 dbSNP
rs929711907 832 dbSNP
rs183356427 835 dbSNP
rs1451348447 840 dbSNP
rs1362953745 841 dbSNP
rs909582331 846 dbSNP
rs941615348 852 dbSNP
rs186722579 857 dbSNP
rs1451579323 860 dbSNP
rs1311186900 862 dbSNP
rs774143464 865 dbSNP
rs921295542 867 dbSNP
rs1317638957 869 dbSNP
rs375684974 889 dbSNP
rs1040049682 891 dbSNP
rs1223769654 895 dbSNP
rs1245527784 909 dbSNP
rs934012940 913 dbSNP
rs867484175 922 dbSNP
rs1327016885 924 dbSNP
rs1320225255 925 dbSNP
rs1164490513 929 dbSNP
rs933789659 932 dbSNP
rs1380392997 934 dbSNP
rs1384014583 941 dbSNP
rs1176829424 950 dbSNP
rs1470453904 951 dbSNP
rs1052278771 953 dbSNP
rs1174441213 955 dbSNP
rs999065432 964 dbSNP
rs1054245008 965 dbSNP
rs893037022 976 dbSNP
rs191163990 981 dbSNP
rs114373756 982 dbSNP
rs971436875 999 dbSNP
rs577816721 1002 dbSNP
rs1026462057 1008 dbSNP
rs1218220336 1026 dbSNP
rs950511167 1027 dbSNP
rs905227596 1035 dbSNP
rs1244757871 1042 dbSNP
rs1325763897 1043 dbSNP
rs910088910 1046 dbSNP
rs1454374640 1049 dbSNP
rs1403556002 1056 dbSNP
rs1002448665 1060 dbSNP
rs1287795597 1068 dbSNP
rs1414081816 1077 dbSNP
rs149416147 1081 dbSNP
rs369056307 1082 dbSNP
rs1474733633 1088 dbSNP
rs1420404719 1090 dbSNP
rs921526987 1092 dbSNP
rs372122503 1093 dbSNP
rs1802872 1095 dbSNP
rs933961089 1109 dbSNP
rs143805564 1111 dbSNP
rs1026489487 1113 dbSNP
rs539967130 1118 dbSNP
rs116528740 1122 dbSNP
rs761681395 1128 dbSNP
rs1452359624 1129 dbSNP
rs1380347180 1138 dbSNP
rs1314046889 1139 dbSNP
rs1054215926 1143 dbSNP
rs983910008 1146 dbSNP
rs1375765993 1147 dbSNP
rs909528638 1148 dbSNP
rs1408261812 1153 dbSNP
rs1222242787 1158 dbSNP
rs1369966499 1164 dbSNP
rs1164781377 1166 dbSNP
rs1044667886 1173 dbSNP
rs1312786440 1176 dbSNP
rs1181617409 1177 dbSNP
rs1470331466 1180 dbSNP
rs1002924676 1181 dbSNP
rs75624521 1181 dbSNP
rs907138380 1181 dbSNP
rs79988601 1182 dbSNP
rs1311787552 1183 dbSNP
rs942371761 1192 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauUCUGGUUCG-GAGGAAGGGa 5'
             | |||   | | :|||||| 
Target 5' --cAUACCCCUCUCCUCUUCCCa 3'
1 - 21
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_012256 | 3UTR | UCUUCCCACCUCCUCCUGGCUAUGUUCUGCAGCCUCCCAGAGUAGAAAACUACUUUGUUACUUAAGGUUGUUCACCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000335870.2 | 3UTR | CAUACCCCUCUCCUCUUCCCACCUCCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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