pre-miRNA Information
pre-miRNA hsa-mir-3915   
Genomic Coordinates chrX: 32583656 - 32583752
Description Homo sapiens miR-3915 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3915
Sequence 21| UUGAGGAAAAGAUGGUCUUAUU |42
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs997323565 10 dbSNP
rs1192161547 15 dbSNP
rs1255075246 19 dbSNP
rs1452812574 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FOXL2   
Synonyms BPES, BPES1, PFRK, PINTO, POF3
Description forkhead box L2
Transcript NM_023067   
Expression
Putative miRNA Targets on FOXL2
3'UTR of FOXL2
(miRNA target sites are highlighted)
>FOXL2|NM_023067|3'UTR
   1 GAGCCCACCGCATGCCGGTGCAGACGGATGCGAGGATGCAGGGACGCGCGACGCCGGCCCCGGTCGCAGCCGACGACGCC
  81 GCCGCCAGCCTGACCTCACACCCTCTGGGCCCGCCTCTGGAGCCAGCGCCCAGGGTCCCTCTGTGCTTTTTCGCTTTCCT
 161 AAGCTCCTGTCGCTCCTCTTTGTCCCCTCAGTTTATGTCCTCCTGTGCTCACCTCCCTGACCTCTGTGACCTTGCACTCC
 241 CCTGGCCTGAAGCTGCCTCTCTGCGCGCTTTCTACTGGGCTCGTCTCTTTCCGGAGCCCCAGCGTCTCCTGCCCAAATTC
 321 ACCGCGGAAAGGGCCCGGGGCGGAGGTGCGACCGGGCGTCGGCAGCGCAGACCTCTTGGCCTTCTCTCACAGGTCGGTGC
 401 GCTCGCTCTCCGCGTTCCCCGCCCGACTGCCGTGCAGTCCATGGCTAGACGCGCCGGACAGGACTGATGGCGGGACCGCG
 481 CTGCCCGAGAAAGGGACGGACCAATACGTGTGTTTGCTCCGCGAACCCTCTTGAAGCTGTTCAGAAGCCGCTTGCCGCGG
 561 GGCCCACTAGGCGGGGCGGGGGTTGGGACCCAGCGGGAGCCGGGGCAGCCTGGCTCCACGGCCTGTACTCGGTTTACACC
 641 GCGGGCGGGCGCGGAGGGAGGCTGCGTTTCCTCCGCTATCAGTCCCGTCGCTTCGGGCACCTCCGGGCCCCGGCGGCTGG
 721 CTAATGTTTTGTTTGAAAGATCGGTGGAACTTTTTAAGAGAGTATTTAAAAAAAAAAAAAGGAAAAAAAATTCACCGGGC
 801 AACCGGGGAAGTATTGTGGCCTTGGAGTTTGCTAAATCCAAATATGAAAATCAAAAGCTTTAGTATTCCTCATCTTCTCT
 881 TCTGGAAGATTTGCGTTAGAGTTTTTGTTGGGCCTTCAAAAAGCTGTGTTCAGAGTTAGGAGAATATATCCAATAAAAGA
 961 TGGTTTCGTCTACCAATTGGGGAAGTTTCACCCTCTCCCTATCTGAAGAAAAAAATCAAAAACAAATGTCCCCGGATCTT
1041 TCGATGCAAGTCCTGGAGGCAGGGAGATCACTGCCTGCCTGGCCCACGCTGCTGGGACGGCTCGTCCTCCCTGCTTTTTG
1121 TTTTTCAAACCTCCTGCTTCTCCCACCTTGGGAAGGAGAAATGTGAAACCCGGCAGCGGCCGACCTAGGCGGTCTTGTGG
1201 CCCGGAGCCGGCCCGGCCCGAAAACCATAGACCTGGTTGTACTGTAGCTTGTTGTTTGGGGGACCAAATTTTCTAGAGAG
1281 AACTAGAGCACTTTTGTTGTGTTTTTTTGTTTTGTTTTTGTTTTTTGCCTTGTCGATTCCCGAATAAATTTTGTGTTCCT
1361 TCTTTTAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuaUUCUGGUAG--AAAAGGAGUu 5'
             || | | |:  | ||||||| 
Target 5' atcAAAAGCTTTAGTATTCCTCAt 3'
850 - 873 149.00 -7.90
2
miRNA  3' uuaUUCUGGUAGAAAAGGAGuu 5'
             :||:|:: | |||||||  
Target 5' aggGAGGCTG-CGTTTCCTCcg 3'
655 - 675 138.00 -11.70
3
miRNA  3' uuauUCUGGUAGAA----AAG-GAGUu 5'
              ||||| ||||    ||| |||| 
Target 5' gcgcAGACC-TCTTGGCCTTCTCTCAc 3'
365 - 390 131.00 -13.89
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28858970 3 COSMIC
COSN30118551 7 COSMIC
COSN31491970 13 COSMIC
COSN30147532 36 COSMIC
COSN30707217 46 COSMIC
COSN30140083 79 COSMIC
COSN30502725 79 COSMIC
COSN21004020 81 COSMIC
COSN30529278 84 COSMIC
COSN30177327 100 COSMIC
COSN30467284 105 COSMIC
COSN1268489 109 COSMIC
COSN30127714 133 COSMIC
COSN7820525 265 COSMIC
COSN6752133 505 COSMIC
COSN27523241 768 COSMIC
COSN20771573 924 COSMIC
COSN31595485 1088 COSMIC
COSN1916438 1171 COSMIC
COSN27167842 1224 COSMIC
COSN31588132 1241 COSMIC
COSN17181454 1288 COSMIC
COSN19087267 1299 COSMIC
COSN1268487 1342 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1211121166 1 dbSNP
rs753238372 2 dbSNP
rs1265359932 3 dbSNP
rs1229602114 9 dbSNP
rs199498438 12 dbSNP
rs1447666940 13 dbSNP
rs759909934 14 dbSNP
rs766692254 15 dbSNP
rs762929517 16 dbSNP
rs1325531862 17 dbSNP
rs773390956 18 dbSNP
rs769794895 22 dbSNP
rs761793502 26 dbSNP
rs776721117 28 dbSNP
rs1413843094 29 dbSNP
rs942873270 34 dbSNP
rs1300378036 35 dbSNP
rs768497108 36 dbSNP
rs772904769 37 dbSNP
rs1246923312 49 dbSNP
rs910021915 50 dbSNP
rs369818928 51 dbSNP
rs1268521961 56 dbSNP
rs1426938011 57 dbSNP
rs951569056 58 dbSNP
rs1439827183 59 dbSNP
rs551689992 61 dbSNP
rs999102294 62 dbSNP
rs1426190120 65 dbSNP
rs1189290922 66 dbSNP
rs907490032 71 dbSNP
rs982561449 72 dbSNP
rs1466257052 76 dbSNP
rs538054141 77 dbSNP
rs1024169165 78 dbSNP
rs1380610158 79 dbSNP
rs1248459767 80 dbSNP
rs1012554813 84 dbSNP
rs569438765 85 dbSNP
rs894161273 91 dbSNP
rs890586658 93 dbSNP
rs1194415709 95 dbSNP
rs1275773149 97 dbSNP
rs879225845 100 dbSNP
rs929016342 106 dbSNP
rs958553211 109 dbSNP
rs1240744650 113 dbSNP
rs1235201673 115 dbSNP
rs1445854671 120 dbSNP
rs549571680 122 dbSNP
rs1048820017 123 dbSNP
rs1372127332 125 dbSNP
rs1474330332 132 dbSNP
rs930405318 137 dbSNP
rs1169398195 141 dbSNP
rs1294332591 152 dbSNP
rs1400706502 163 dbSNP
rs1000078768 175 dbSNP
rs529812777 176 dbSNP
rs1041631517 179 dbSNP
rs1454635236 185 dbSNP
rs1036640245 195 dbSNP
rs944636934 196 dbSNP
rs1039872534 199 dbSNP
rs910052906 202 dbSNP
rs1203593694 203 dbSNP
rs911759094 212 dbSNP
rs1048558809 214 dbSNP
rs930127232 216 dbSNP
rs567245375 221 dbSNP
rs1403603553 222 dbSNP
rs547396660 230 dbSNP
rs1194812580 233 dbSNP
rs921281354 240 dbSNP
rs1479949652 242 dbSNP
rs982372738 243 dbSNP
rs114204440 245 dbSNP
rs957712851 247 dbSNP
rs1467685091 253 dbSNP
rs1303533009 254 dbSNP
rs1031829950 257 dbSNP
rs1169398129 259 dbSNP
rs999392618 265 dbSNP
rs1451582328 266 dbSNP
rs1341600580 277 dbSNP
rs185607481 282 dbSNP
rs990869178 285 dbSNP
rs1326234164 288 dbSNP
rs763760223 298 dbSNP
rs1024951088 302 dbSNP
rs762514887 304 dbSNP
rs374179510 306 dbSNP
rs1263448248 313 dbSNP
rs775294487 314 dbSNP
rs1032383372 335 dbSNP
rs1270729880 336 dbSNP
rs545366458 339 dbSNP
rs531357118 340 dbSNP
rs562710463 341 dbSNP
rs1451721439 349 dbSNP
rs998081690 354 dbSNP
rs1048789118 358 dbSNP
rs778058896 361 dbSNP
rs897609439 363 dbSNP
rs1306830142 364 dbSNP
rs1314685222 386 dbSNP
rs1036115048 389 dbSNP
rs1286337308 394 dbSNP
rs1358327096 396 dbSNP
rs944503214 397 dbSNP
rs1488648712 400 dbSNP
rs1176619428 401 dbSNP
rs542718212 404 dbSNP
rs1417453451 405 dbSNP
rs372084005 408 dbSNP
rs1380949603 413 dbSNP
rs1048155268 416 dbSNP
rs931921569 418 dbSNP
rs1161839998 419 dbSNP
rs930158419 423 dbSNP
rs574101318 431 dbSNP
rs1298163588 432 dbSNP
rs1371771158 434 dbSNP
rs1449603782 437 dbSNP
rs1047106734 438 dbSNP
rs1381329597 440 dbSNP
rs1314430038 442 dbSNP
rs949625900 451 dbSNP
rs571486112 453 dbSNP
rs1390181288 459 dbSNP
rs1203535935 461 dbSNP
rs916577639 462 dbSNP
rs769532247 466 dbSNP
rs181248112 472 dbSNP
rs1396163799 473 dbSNP
rs540216839 483 dbSNP
rs921250342 493 dbSNP
rs990141972 502 dbSNP
rs990816737 508 dbSNP
rs1363997577 510 dbSNP
rs1182050748 516 dbSNP
rs188432473 517 dbSNP
rs936671284 519 dbSNP
rs577655196 525 dbSNP
rs1424808400 527 dbSNP
rs925392535 528 dbSNP
rs1353069709 532 dbSNP
rs1467654768 533 dbSNP
rs977548610 537 dbSNP
rs1404803885 539 dbSNP
rs1449814317 546 dbSNP
rs971950705 550 dbSNP
rs1379409720 554 dbSNP
rs1213590253 561 dbSNP
rs1293207671 562 dbSNP
rs1024502279 566 dbSNP
rs1208085502 567 dbSNP
rs967627070 567 dbSNP
rs1013162118 571 dbSNP
rs1483713798 573 dbSNP
rs1186089066 574 dbSNP
rs1020092904 575 dbSNP
rs557984777 577 dbSNP
rs977076656 578 dbSNP
rs965289103 581 dbSNP
rs1018196083 583 dbSNP
rs919023903 583 dbSNP
rs1467808061 585 dbSNP
rs1335662962 587 dbSNP
rs115665190 591 dbSNP
rs1429611373 593 dbSNP
rs1417278648 596 dbSNP
rs1250761935 598 dbSNP
rs1400368857 598 dbSNP
rs1027322134 601 dbSNP
rs367850391 604 dbSNP
rs1026748974 606 dbSNP
rs993908221 611 dbSNP
rs897320592 613 dbSNP
rs185086382 614 dbSNP
rs1194797539 616 dbSNP
rs867016301 618 dbSNP
rs180829214 619 dbSNP
rs1477341528 626 dbSNP
rs1174772964 628 dbSNP
rs1425269501 629 dbSNP
rs1008665620 630 dbSNP
rs531903461 632 dbSNP
rs1237466322 638 dbSNP
rs890265735 640 dbSNP
rs1050248178 643 dbSNP
rs1055284132 644 dbSNP
rs931890587 662 dbSNP
rs893761668 664 dbSNP
rs563149210 666 dbSNP
rs978163721 670 dbSNP
rs1438527239 674 dbSNP
rs1412127152 675 dbSNP
rs1343866374 677 dbSNP
rs1223269423 679 dbSNP
rs935973445 686 dbSNP
rs1302723818 687 dbSNP
rs1217563844 690 dbSNP
rs924655934 692 dbSNP
rs1406198276 694 dbSNP
rs913064770 710 dbSNP
rs1178367318 711 dbSNP
rs977892698 717 dbSNP
rs950191986 719 dbSNP
rs1408097115 721 dbSNP
rs1176202046 742 dbSNP
rs1381583946 743 dbSNP
rs535700712 751 dbSNP
rs190825750 760 dbSNP
rs1156945422 762 dbSNP
rs1162459052 767 dbSNP
rs917414474 768 dbSNP
rs1406862075 771 dbSNP
rs1411227147 772 dbSNP
rs79322565 779 dbSNP
rs1018233537 780 dbSNP
rs1307209098 781 dbSNP
rs1379139213 781 dbSNP
rs35050049 781 dbSNP
rs555195919 781 dbSNP
rs1211983252 787 dbSNP
rs201782101 791 dbSNP
rs985347562 791 dbSNP
rs952376816 796 dbSNP
rs1239471091 797 dbSNP
rs991696687 804 dbSNP
rs1182658359 805 dbSNP
rs958863884 807 dbSNP
rs1266524098 820 dbSNP
rs1473676770 824 dbSNP
rs1026611894 833 dbSNP
rs1027873278 845 dbSNP
rs1197657870 857 dbSNP
rs547557411 863 dbSNP
rs72976936 871 dbSNP
rs1464014924 879 dbSNP
rs571264165 882 dbSNP
rs1402637476 895 dbSNP
rs1447596815 899 dbSNP
rs551343367 907 dbSNP
rs1025144155 908 dbSNP
rs1014614947 922 dbSNP
rs139209636 926 dbSNP
rs1217407108 932 dbSNP
rs531647312 935 dbSNP
rs1457861608 953 dbSNP
rs1001047412 959 dbSNP
rs890235162 960 dbSNP
rs1443805187 968 dbSNP
rs1028779644 975 dbSNP
rs1187746960 976 dbSNP
rs1476717261 979 dbSNP
rs761518975 979 dbSNP
rs1172808194 980 dbSNP
rs1424225309 984 dbSNP
rs529657655 989 dbSNP
rs1466246574 992 dbSNP
rs148908196 995 dbSNP
rs945360627 997 dbSNP
rs778894197 999 dbSNP
rs1335098910 1000 dbSNP
rs1326269097 1001 dbSNP
rs375253939 1002 dbSNP
rs923418579 1003 dbSNP
rs1053609476 1009 dbSNP
rs935288235 1014 dbSNP
rs1280691303 1016 dbSNP
rs1319250640 1016 dbSNP
rs903170894 1024 dbSNP
rs1040847265 1038 dbSNP
rs1346427261 1042 dbSNP
rs1200747694 1046 dbSNP
rs542785115 1050 dbSNP
rs529086394 1063 dbSNP
rs1487216057 1064 dbSNP
rs1195537563 1070 dbSNP
rs1263582439 1073 dbSNP
rs1196587496 1074 dbSNP
rs1376058881 1083 dbSNP
rs1467636457 1085 dbSNP
rs911035183 1096 dbSNP
rs1360097202 1097 dbSNP
rs1316296244 1099 dbSNP
rs560987302 1103 dbSNP
rs1341451224 1104 dbSNP
rs1299820916 1105 dbSNP
rs1332380636 1106 dbSNP
rs1233316940 1108 dbSNP
rs1389475222 1108 dbSNP
rs950177375 1111 dbSNP
rs1159739077 1112 dbSNP
rs917300369 1121 dbSNP
rs952575729 1122 dbSNP
rs919836445 1125 dbSNP
rs1458771087 1129 dbSNP
rs972466383 1130 dbSNP
rs991578041 1131 dbSNP
rs937463016 1144 dbSNP
rs1426893091 1148 dbSNP
rs1269345020 1157 dbSNP
rs920779551 1160 dbSNP
rs1199709749 1163 dbSNP
rs1024752951 1165 dbSNP
rs1013722189 1171 dbSNP
rs1478137363 1174 dbSNP
rs974044681 1175 dbSNP
rs959548268 1178 dbSNP
rs962347775 1190 dbSNP
rs1457712357 1194 dbSNP
rs560202998 1200 dbSNP
rs1379063905 1201 dbSNP
rs185469812 1204 dbSNP
rs1387818752 1209 dbSNP
rs1307929704 1211 dbSNP
rs1373939414 1212 dbSNP
rs1463993332 1214 dbSNP
rs1248133786 1216 dbSNP
rs954379701 1219 dbSNP
rs904146806 1228 dbSNP
rs1028673379 1240 dbSNP
rs1009593943 1247 dbSNP
rs995902422 1248 dbSNP
rs1195094937 1249 dbSNP
rs2291251 1255 dbSNP
rs1456500624 1257 dbSNP
rs1032207263 1259 dbSNP
rs1180814696 1273 dbSNP
rs1381129131 1288 dbSNP
rs76490864 1303 dbSNP
rs943396467 1303 dbSNP
rs902467667 1307 dbSNP
rs1049625070 1309 dbSNP
rs1331186188 1309 dbSNP
rs1370516552 1309 dbSNP
rs1347393623 1314 dbSNP
rs1268572178 1320 dbSNP
rs535856383 1321 dbSNP
rs931134078 1329 dbSNP
rs1046747669 1330 dbSNP
rs1226207770 1335 dbSNP
rs544551456 1347 dbSNP
rs895832971 1353 dbSNP
rs1055863561 1358 dbSNP
rs937432084 1359 dbSNP
rs920747144 1366 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuauucugguagAAAAGGAGUu 5'
                      | ||||||| 
Target 5' ------------UAUUCCUCAu 3'
1 - 10
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000330315.3 | 3UTR | UAUUCCUCAUCUUCUCUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
111 hsa-miR-3915 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059544 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 2 2
MIRT081703 ZNF507 zinc finger protein 507 2 2
MIRT083311 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT119046 SFT2D3 SFT2 domain containing 3 2 2
MIRT189381 TXLNA taxilin alpha 2 4
MIRT195895 C16ORF72 chromosome 16 open reading frame 72 2 6
MIRT223807 OXR1 oxidation resistance 1 2 2
MIRT292954 ZNF146 zinc finger protein 146 2 4
MIRT293949 RPL13A ribosomal protein L13a 2 6
MIRT300900 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT339332 SESN2 sestrin 2 2 2
MIRT349304 ZNF317 zinc finger protein 317 2 2
MIRT364736 TOR1B torsin family 1 member B 2 2
MIRT366233 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT384605 CLIC4 chloride intracellular channel 4 2 2
MIRT401745 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT443169 UBL3 ubiquitin like 3 2 2
MIRT444215 METTL12 methyltransferase like 12 2 2
MIRT444375 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT445340 TCEANC transcription elongation factor A N-terminal and central domain containing 2 2
MIRT445474 KDM6A lysine demethylase 6A 2 2
MIRT445598 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT445630 TMEM50A transmembrane protein 50A 2 2
MIRT446012 VNN1 vanin 1 2 2
MIRT446115 ASTN1 astrotactin 1 2 2
MIRT446248 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT446382 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446940 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446967 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT447178 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447209 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447237 IHH indian hedgehog 2 2
MIRT447807 EMX1 empty spiracles homeobox 1 2 2
MIRT447853 RRP8 ribosomal RNA processing 8 2 4
MIRT448054 MMP15 matrix metallopeptidase 15 2 2
MIRT448094 RASD2 RASD family member 2 2 2
MIRT448704 KLHL11 kelch like family member 11 2 2
MIRT448851 FEM1C fem-1 homolog C 2 2
MIRT449488 ZBTB4 zinc finger and BTB domain containing 4 2 2
MIRT449785 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT450774 PDE3A phosphodiesterase 3A 2 2
MIRT451124 ZNF99 zinc finger protein 99 2 2
MIRT452676 GPR156 G protein-coupled receptor 156 2 2
MIRT452888 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453188 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453353 ZNF3 zinc finger protein 3 2 2
MIRT454502 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT454629 FAM83H family with sequence similarity 83 member H 2 2
MIRT455183 AGTRAP angiotensin II receptor associated protein 2 2
MIRT458204 FOXL2 forkhead box L2 2 2
MIRT458723 CES2 carboxylesterase 2 2 2
MIRT458942 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT460304 FLCN folliculin 2 2
MIRT460989 SYT7 synaptotagmin 7 2 2
MIRT461697 ZNF426 zinc finger protein 426 2 2
MIRT461903 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462193 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT462290 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT463795 XPOT exportin for tRNA 2 2
MIRT464649 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 4
MIRT465911 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 4
MIRT465992 TMEM189 transmembrane protein 189 2 4
MIRT466302 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT466575 TBC1D2B TBC1 domain family member 2B 2 2
MIRT470558 POU2F1 POU class 2 homeobox 1 2 2
MIRT471333 PERP PERP, TP53 apoptosis effector 2 2
MIRT471659 PALM2 paralemmin 2 2 2
MIRT472363 TSPAN1 tetraspanin 1 2 2
MIRT473468 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT474702 KIF3A kinesin family member 3A 2 2
MIRT476067 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT476077 GRB2 growth factor receptor bound protein 2 2 2
MIRT476423 GBA2 glucosylceramidase beta 2 2 2
MIRT476463 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT477877 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT478240 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT479460 CDK6 cyclin dependent kinase 6 2 2
MIRT481030 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT491496 HLA-DOA major histocompatibility complex, class II, DO alpha 2 2
MIRT497585 SLC23A1 solute carrier family 23 member 1 2 2
MIRT498542 TMEM30B transmembrane protein 30B 2 2
MIRT499263 NBPF11 NBPF member 11 2 2
MIRT504698 ZNF117 zinc finger protein 117 2 2
MIRT511288 KLHL15 kelch like family member 15 2 4
MIRT523121 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT529601 H1F0 H1 histone family member 0 2 2
MIRT533481 TRIM71 tripartite motif containing 71 2 2
MIRT535571 NUP37 nucleoporin 37 2 4
MIRT537869 EDA2R ectodysplasin A2 receptor 2 2
MIRT538010 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552681 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 4
MIRT554986 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT556659 KMT2D lysine methyltransferase 2D 2 4
MIRT557437 GTPBP2 GTP binding protein 2 2 2
MIRT560813 CRTAP cartilage associated protein 2 2
MIRT562115 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563103 IFRD2 interferon related developmental regulator 2 2 2
MIRT574199 LMNB1 lamin B1 2 2
MIRT623920 FMNL3 formin like 3 2 2
MIRT626551 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 2 2
MIRT645458 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 2 2
MIRT649082 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT659477 CLDN1 claudin 1 2 2
MIRT667950 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT701981 MIER3 MIER family member 3 2 2
MIRT708694 TFDP2 transcription factor Dp-2 2 2
MIRT709649 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710090 FAM229B family with sequence similarity 229 member B 2 2
MIRT718396 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
MIRT724972 TNS1 tensin 1 2 2
MIRT756050 HRH4 histamine receptor H4 2 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3915 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3915 Cisplatin + Decitabine sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3915 Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3915 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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