pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TNFAIP8L3   
Synonyms TIPE3
Description TNF alpha induced protein 8 like 3
Transcript NM_207381   
Expression
Putative miRNA Targets on TNFAIP8L3
3'UTR of TNFAIP8L3
(miRNA target sites are highlighted)
>TNFAIP8L3|NM_207381|3'UTR
   1 ATGCCTTCCCTCCTACTGGACTTTGCTGCTTTAAAGTTACAGCACTCAACCATGATCTGGGTGAGAATCAAGAACATAAG
  81 CAGAAACCCTTGTCAAAGATGTCCATGTTCTTTCCTGTTCATCCCTCTGATGCTGATTCTGATGCTGAACTGAGCTCAGG
 161 TGTGTTTTTCTTCCAAGCTTTCTAGCAAGGTTTCTACTTAAAATCACCTGTGTGCAAGCCCAAAGGACATTTCATCTATT
 241 CTAAGCAGAAAGGCTGTTTTGTTCATTACAGTGAGTGCTGTTCATCTCATGGAGTGGGAGGAGCACTAAACCAGGAGACA
 321 GAGGACATGGATTTGGTTTCCAGCTTAACCAGTTAGGACTCTGTCCTCTGCATTCTGGAACCATGATGCCTGCCTGCCTG
 401 CCTCACAGGGCTGTTGTGAGGACCAGATGAGATGATGTATGTTCATACTTTTGGAATCTCTAATTTAAAGTCTTAATATT
 481 TTGTCTTCTGAGTGTGAGGGGATAAACCTGGATGTAGACTATTAAGCAGCATAGGAGAAAAGAACAATAGAATCTAATGG
 561 ACTGGGTTTGCAATCTCTCTCTAAATGCACTGCTTCAGACAAAGTGAAATCCAAAGGTGTGAAAAAGTATAGCTGCAAAT
 641 TGGAAAAATGTGTTTCAAGAGTCGTCTTTTTGGCCAGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCG
 721 AGGTGGGCAGATTGCCTGAGGTCCGGAGTTCAAGATCAGCCTGGCCAACATGATGAAACCCTATCTCTACTAAAATTACA
 801 AAAATTAGCCAGGCGTGGTGGTACACGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGTTTGAACCTGG
 881 GAGATGGAGGCTGCAGTGAGCTGAGATCACGCCACTGTACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCTAAAAAA
 961 TAATAATAATAATAATAATTTTTTTAAAAAGAGGTGTTTTTGAGGTCTTAGATGTTCAGGTTGATGATCCTGCAGAGGGA
1041 AACTTTCCATGGGGGGGTGGGGAGAGAGAGTTTTCCATCCACAATATAGAAACAGAGAAGCACTGTGCTCCCTCTGCAGG
1121 ACCAGCCTTCCCTTATCTAAGGGGCATGGAGCTCAGGGAGGCTTTATTCCATATGCACGGGAGAATCAGGCAGAATGAAC
1201 CCCTACCCATCTTTCTTGGCTTTTCAGTCATTTTGTGCTGTTTTCTCTGGTTCATTAATAAATTGAAACTGCCCTCCAAA
1281 AAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUUCUGGUUCGGAGGAAGGGa 5'
            |:|||||:    ||||||| 
Target 5' gcAGGACCAG----CCTTCCCt 3'
1116 - 1133 158.00 -22.00
2
miRNA  3' gauucugguucggaGGAAGGGa 5'
                        ||||||| 
Target 5' -----------atgCCTTCCCt 3'
1 - 11 140.00 -13.90
3
miRNA  3' gaUUCU---GGUUCGGAGGAAGGGa 5'
            ||||   ||| | :||:||||: 
Target 5' caAAGATGTCCATG-TTCTTTCCTg 3'
94 - 117 131.00 -13.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30185830 10 COSMIC
COSN30477397 12 COSMIC
COSN31489499 19 COSMIC
COSN30130482 65 COSMIC
COSN22328701 101 COSMIC
COSN1678660 104 COSMIC
COSN30498884 105 COSMIC
COSN5755146 276 COSMIC
COSN16829373 290 COSMIC
COSN26708624 385 COSMIC
COSN21087654 444 COSMIC
COSN24541833 494 COSMIC
COSN31959652 615 COSMIC
COSN6275146 641 COSMIC
COSN31961088 744 COSMIC
COSN31961087 814 COSMIC
COSN17450507 1059 COSMIC
COSN17659017 1231 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1357899207 8 dbSNP
rs1382940520 25 dbSNP
rs1030160455 26 dbSNP
rs1304683250 26 dbSNP
rs1488864388 28 dbSNP
rs1196460409 29 dbSNP
rs1254583391 30 dbSNP
rs1466580331 32 dbSNP
rs765141817 41 dbSNP
rs997319509 43 dbSNP
rs761872315 45 dbSNP
rs776288868 49 dbSNP
rs763957242 51 dbSNP
rs1416729947 55 dbSNP
rs901262053 57 dbSNP
rs759646370 58 dbSNP
rs774734590 76 dbSNP
rs1359831421 79 dbSNP
rs376647506 88 dbSNP
rs1399861007 102 dbSNP
rs1395206129 105 dbSNP
rs766684473 116 dbSNP
rs1313029674 130 dbSNP
rs893841440 147 dbSNP
rs763449032 159 dbSNP
rs1307979795 167 dbSNP
rs979988917 172 dbSNP
rs935610656 175 dbSNP
rs372006595 191 dbSNP
rs79491799 194 dbSNP
rs1024328023 196 dbSNP
rs547461188 208 dbSNP
rs773621628 211 dbSNP
rs960706375 214 dbSNP
rs916332189 223 dbSNP
rs1005010828 227 dbSNP
rs1381066848 228 dbSNP
rs1441601759 230 dbSNP
rs886505245 234 dbSNP
rs1357319350 236 dbSNP
rs1465380346 237 dbSNP
rs532565732 246 dbSNP
rs1274073095 247 dbSNP
rs1048954019 253 dbSNP
rs1404078803 254 dbSNP
rs995092342 277 dbSNP
rs1247019302 283 dbSNP
rs368205480 288 dbSNP
rs1306438204 292 dbSNP
rs572577947 295 dbSNP
rs1390742070 301 dbSNP
rs1377041540 308 dbSNP
rs941761261 310 dbSNP
rs1467635497 311 dbSNP
rs908915308 312 dbSNP
rs1234430752 313 dbSNP
rs983077759 322 dbSNP
rs950639299 328 dbSNP
rs944604342 345 dbSNP
rs1030171979 349 dbSNP
rs1456710409 350 dbSNP
rs1198311017 362 dbSNP
rs1333047807 375 dbSNP
rs1238989939 387 dbSNP
rs1459169405 404 dbSNP
rs911591355 413 dbSNP
rs187910781 416 dbSNP
rs1422991612 424 dbSNP
rs59067851 429 dbSNP
rs964598659 437 dbSNP
rs1176684327 440 dbSNP
rs1393230371 443 dbSNP
rs934432314 447 dbSNP
rs925690427 448 dbSNP
rs1165226185 457 dbSNP
rs1400507043 460 dbSNP
rs1017842285 470 dbSNP
rs1459169847 474 dbSNP
rs978514050 478 dbSNP
rs1007008975 483 dbSNP
rs916722733 494 dbSNP
rs1316490721 501 dbSNP
rs991514491 509 dbSNP
rs531851817 520 dbSNP
rs563424324 521 dbSNP
rs776937599 531 dbSNP
rs1192097077 533 dbSNP
rs1032344723 539 dbSNP
rs1035042166 551 dbSNP
rs183706743 554 dbSNP
rs999490272 558 dbSNP
rs542051872 560 dbSNP
rs1211826821 562 dbSNP
rs1046623075 564 dbSNP
rs1423899336 565 dbSNP
rs949652698 571 dbSNP
rs1411374312 573 dbSNP
rs1162245796 578 dbSNP
rs1348848225 584 dbSNP
rs868359271 586 dbSNP
rs1305521846 611 dbSNP
rs1028172152 612 dbSNP
rs1399797843 617 dbSNP
rs1279165396 620 dbSNP
rs745334637 627 dbSNP
rs994892472 629 dbSNP
rs1055694654 631 dbSNP
rs941824859 640 dbSNP
rs1239873982 656 dbSNP
rs1223794230 659 dbSNP
rs574633237 663 dbSNP
rs1487228351 664 dbSNP
rs1311414559 678 dbSNP
rs548981695 687 dbSNP
rs908927953 689 dbSNP
rs553265584 697 dbSNP
rs540991048 710 dbSNP
rs187038443 719 dbSNP
rs193275549 720 dbSNP
rs760012019 724 dbSNP
rs1382408836 734 dbSNP
rs536704286 743 dbSNP
rs754407390 745 dbSNP
rs964978134 773 dbSNP
rs1419694608 776 dbSNP
rs1299320395 783 dbSNP
rs1419785655 791 dbSNP
rs1382647350 794 dbSNP
rs910424270 805 dbSNP
rs35974141 811 dbSNP
rs990348676 813 dbSNP
rs1446221559 814 dbSNP
rs188290031 815 dbSNP
rs1380083082 818 dbSNP
rs958114895 824 dbSNP
rs554855557 826 dbSNP
rs1454250680 827 dbSNP
rs1286615701 828 dbSNP
rs1448556764 835 dbSNP
rs1207699971 837 dbSNP
rs1396060925 849 dbSNP
rs1032397001 855 dbSNP
rs1483335483 859 dbSNP
rs1445436951 862 dbSNP
rs1377999287 874 dbSNP
rs867815071 880 dbSNP
rs1261299408 881 dbSNP
rs536886502 885 dbSNP
rs1205745884 889 dbSNP
rs537061488 895 dbSNP
rs548040033 904 dbSNP
rs749108062 910 dbSNP
rs183001995 911 dbSNP
rs1013874141 913 dbSNP
rs1347145555 925 dbSNP
rs895385477 939 dbSNP
rs1275211025 949 dbSNP
rs1235164359 953 dbSNP
rs1324255427 961 dbSNP
rs1329538298 961 dbSNP
rs1376307536 964 dbSNP
rs373894444 964 dbSNP
rs890351910 965 dbSNP
rs1055302161 967 dbSNP
rs1294431697 969 dbSNP
rs1461594657 971 dbSNP
rs1052745480 973 dbSNP
rs1235933460 975 dbSNP
rs1456947302 977 dbSNP
rs1006312205 978 dbSNP
rs1235102563 980 dbSNP
rs1477362826 980 dbSNP
rs200042140 980 dbSNP
rs887541180 985 dbSNP
rs1047446604 986 dbSNP
rs1471144651 986 dbSNP
rs929044425 992 dbSNP
rs1399777874 993 dbSNP
rs1447628749 994 dbSNP
rs1330902629 1014 dbSNP
rs922996110 1019 dbSNP
rs140814446 1021 dbSNP
rs1310610996 1028 dbSNP
rs1043208246 1032 dbSNP
rs943301065 1035 dbSNP
rs550199687 1037 dbSNP
rs867324428 1039 dbSNP
rs1274144592 1043 dbSNP
rs1225066546 1051 dbSNP
rs1255773596 1052 dbSNP
rs777632916 1053 dbSNP
rs755794612 1054 dbSNP
rs957166017 1056 dbSNP
rs1423187673 1057 dbSNP
rs1466398836 1058 dbSNP
rs939613002 1058 dbSNP
rs928215056 1059 dbSNP
rs1388731934 1061 dbSNP
rs1404797002 1066 dbSNP
rs1372673280 1068 dbSNP
rs1322836394 1072 dbSNP
rs1346005917 1077 dbSNP
rs983680900 1087 dbSNP
rs1478948891 1089 dbSNP
rs1276139801 1102 dbSNP
rs1255486813 1107 dbSNP
rs1227767020 1112 dbSNP
rs1252671765 1123 dbSNP
rs1353687014 1125 dbSNP
rs1187390542 1126 dbSNP
rs924424530 1134 dbSNP
rs752708597 1138 dbSNP
rs1208680985 1141 dbSNP
rs1293161610 1142 dbSNP
rs1490964775 1144 dbSNP
rs1215082395 1149 dbSNP
rs531836862 1151 dbSNP
rs1262992970 1154 dbSNP
rs879507456 1162 dbSNP
rs1485273395 1164 dbSNP
rs950698352 1166 dbSNP
rs781224101 1171 dbSNP
rs1163845759 1172 dbSNP
rs1367521085 1173 dbSNP
rs966779326 1174 dbSNP
rs1426532731 1178 dbSNP
rs116196053 1179 dbSNP
rs1359706853 1185 dbSNP
rs1382537888 1189 dbSNP
rs1013966010 1195 dbSNP
rs1218853408 1199 dbSNP
rs1243444071 1204 dbSNP
rs3169031 1215 dbSNP
rs1315222640 1216 dbSNP
rs1360964393 1217 dbSNP
rs1342047432 1229 dbSNP
rs1285894830 1236 dbSNP
rs959657381 1246 dbSNP
rs548063815 1249 dbSNP
rs1034318930 1252 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucGGAGGAAGGGa 5'
                     |:|||||||| 
Target 5' -------ucccCUUCCUUCCCa 3'
1 - 15
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000327536.5 | 3UTR | UCCCCUUCCUUCCCACCUGCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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