pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ITM2C   
Synonyms BRI3, BRICD2C, E25, E25C, ITM3
Description integral membrane protein 2C
Transcript NM_001012514   
Other Transcripts NM_001012516 , NM_030926   
Expression
Putative miRNA Targets on ITM2C
3'UTR of ITM2C
(miRNA target sites are highlighted)
>ITM2C|NM_001012514|3'UTR
   1 GGCCCTCCTCCCCCAGAACCCCCTGCCGTGTTCCTCTTTTCTTCTTTCCGGCTGCTCTCTGGCCCTCCTCCTTCCCCCTG
  81 CTTAGCTTGTACTTTGGACGCGTTTCTATAGAGGTGACATGTCTCTCCATTCCTCTCCAACCCTGCCCACCTCCCTGTAC
 161 CAGAGCTGTGATCTCTCGGTGGGGGGCCCATCTCTGCTGACCTGGGTGTGGCGGAGGGAGAGGCGATGCTGCAAAGTGTT
 241 TTCTGTGTCCCACTGTCTTGAAGCTGGGCCTGCCAAAGCCTGGGCCCACAGCTGCACCGGCAGCCCAAGGGGAAGGACCG
 321 GTTGGGGGAGCCGGGCATGTGAGGCCCTGGGCAAGGGGATGGGGCTGTGGGGGCGGGGCGGCATGGGCTTCAGAAGTATC
 401 TGCACAATTAGAAAAGTCCTCAGAAGCTTTTTCTTGGAGGGTACACTTTCTTCACTGTCCCTATTCCTAGACCTGGGGCT
 481 TGAGCTGAGGATGGGACGATGTGCCCAGGGAGGGACCCACCAGAGCACAAGAGAAGGTGGCTACCTGGGGGTGTCCCAGG
 561 GACTCTGTCAGTGCCTTCAGCCCACCAGCAGGAGCTTGGAGTTTGGGGAGTGGGGATGAGTCCGTCAAGCACAACTGTTC
 641 TCTGAGTGGAACCAAAGAAGCAAGGAGCTAGGACCCCCAGTCCTGCCCCCCAGGAGCACAAGCAGGGTCCCCTCAGTCAA
 721 GGCAGTGGGATGGGCGGCTGAGGAACGGGGCAGGCAAGGTCACTGCTCAGTCACGTCCACGGGGGACGAGCCGTGGGTTC
 801 TGCTGAGTAGGTGGAGCTCATTGCTTTCTCCAAGCTTGGAACTGTTTTGAAAGATAACACAGAGGGAAAGGGAGAGCCAC
 881 CTGGTACTTGTCCACCCTGCCTCCTCTGTTCTGAAATTCCATCCCCCTCAGCTTAGGGGAATGCACCTTTTTCCCTTTCC
 961 TTCTCACTTTTGCATGTTTTTACTGATCATTCGATATGCTAACCGTTCTCAGCCCTGAGCCTTGGAGAGGAGGGCTGTAA
1041 CGCCTTCAGTCAGTCTCTGGGGATGAAACTCTTAAATGCTTTGTATATTTTCTCAATTAGATCTCTTTTCAGAAGTGTCT
1121 ATAGAACAATAAAAATCTTTTACTTCTGACCTTGAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauuCUGGUUCGGAGGAAGGGa 5'
              |:||   |||||||||| 
Target 5' ctctGGCC-CTCCTCCTTCCCc 3'
57 - 77 157.00 -24.30
2
miRNA  3' gauucugguucGGAGGAAGGGa 5'
                     ::||||||:| 
Target 5' acctttttcccTTTCCTTCTCa 3'
945 - 966 131.00 -14.83
3
miRNA  3' gaUUCUGGUUCGG--AGGAAGGGa 5'
            |:||||   ||  |||| ||| 
Target 5' ctAGGACC--CCCAGTCCTGCCCc 3'
668 - 689 126.00 -19.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN2533171 5 COSMIC
COSN30464338 11 COSMIC
COSN21875969 14 COSMIC
COSN28862343 15 COSMIC
COSN13976907 27 COSMIC
COSN26585679 29 COSMIC
COSN31497947 31 COSMIC
COSN30491418 35 COSMIC
COSN18726982 51 COSMIC
COSN31509990 65 COSMIC
COSN30710746 71 COSMIC
COSN30167331 130 COSMIC
COSN31547351 562 COSMIC
COSN1235082 686 COSMIC
COSN31609954 993 COSMIC
COSN1235083 1015 COSMIC
COSN31606162 1049 COSMIC
COSN8608772 1118 COSMIC
COSN31583354 1133 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs767996264 2 dbSNP
rs961355794 3 dbSNP
rs1281949627 4 dbSNP
rs1222966202 7 dbSNP
rs750033164 8 dbSNP
rs369723774 12 dbSNP
rs373905541 13 dbSNP
rs192245304 14 dbSNP
rs1330538990 15 dbSNP
rs542980547 22 dbSNP
rs752637575 28 dbSNP
rs371063039 29 dbSNP
rs1343048381 35 dbSNP
rs1227368806 36 dbSNP
rs777679750 37 dbSNP
rs929527839 37 dbSNP
rs1344269326 39 dbSNP
rs758792083 46 dbSNP
rs199763050 50 dbSNP
rs62195287 51 dbSNP
rs1394619103 53 dbSNP
rs1189275151 56 dbSNP
rs936189162 67 dbSNP
rs1451607771 71 dbSNP
rs1240614300 77 dbSNP
rs988563299 100 dbSNP
rs1373215486 101 dbSNP
rs539848930 102 dbSNP
rs564951523 103 dbSNP
rs1208724599 104 dbSNP
rs1309366214 105 dbSNP
rs1470426788 105 dbSNP
rs912941711 108 dbSNP
rs1359200612 119 dbSNP
rs1044435005 120 dbSNP
rs774748302 127 dbSNP
rs1003272279 129 dbSNP
rs1341447697 130 dbSNP
rs1035645051 132 dbSNP
rs1433459894 134 dbSNP
rs1045336136 137 dbSNP
rs1389467598 142 dbSNP
rs905546462 144 dbSNP
rs775229072 161 dbSNP
rs937253457 166 dbSNP
rs1049490240 168 dbSNP
rs532115340 179 dbSNP
rs868397154 184 dbSNP
rs1301397261 189 dbSNP
rs1010118689 191 dbSNP
rs1473246087 200 dbSNP
rs1021476866 207 dbSNP
rs1485326469 209 dbSNP
rs1005153456 210 dbSNP
rs1014772973 214 dbSNP
rs897203896 218 dbSNP
rs759752808 226 dbSNP
rs1479822192 228 dbSNP
rs1228593355 231 dbSNP
rs545193391 237 dbSNP
rs985228087 247 dbSNP
rs1251811270 260 dbSNP
rs1413359930 270 dbSNP
rs910946414 273 dbSNP
rs1421448215 299 dbSNP
rs866255002 299 dbSNP
rs965104509 300 dbSNP
rs1179934196 307 dbSNP
rs998278237 309 dbSNP
rs1169808344 320 dbSNP
rs114511316 321 dbSNP
rs954064671 323 dbSNP
rs1163004074 324 dbSNP
rs1474769064 325 dbSNP
rs985711125 326 dbSNP
rs1173801809 327 dbSNP
rs562476617 328 dbSNP
rs1231864312 329 dbSNP
rs1460238020 333 dbSNP
rs549624141 334 dbSNP
rs1047936481 337 dbSNP
rs1297445052 340 dbSNP
rs909401807 341 dbSNP
rs772693941 345 dbSNP
rs567868478 350 dbSNP
rs1226033940 361 dbSNP
rs1397091734 361 dbSNP
rs942183265 368 dbSNP
rs756148006 372 dbSNP
rs528446968 375 dbSNP
rs905934371 376 dbSNP
rs1235116093 378 dbSNP
rs1002915325 380 dbSNP
rs949773188 381 dbSNP
rs981193317 390 dbSNP
rs371408330 397 dbSNP
rs1417292305 400 dbSNP
rs1407211025 408 dbSNP
rs546720172 409 dbSNP
rs1455203975 412 dbSNP
rs1010171147 420 dbSNP
rs1212758059 423 dbSNP
rs1465058474 439 dbSNP
rs1212303623 446 dbSNP
rs1269215136 451 dbSNP
rs571767614 454 dbSNP
rs1467606525 464 dbSNP
rs1048958851 473 dbSNP
rs531338318 474 dbSNP
rs867452607 475 dbSNP
rs1193742208 479 dbSNP
rs1426808968 480 dbSNP
rs1220257561 483 dbSNP
rs1336770433 486 dbSNP
rs909094275 489 dbSNP
rs1301327609 495 dbSNP
rs904382880 498 dbSNP
rs531313417 499 dbSNP
rs1389620960 504 dbSNP
rs557179634 515 dbSNP
rs901711142 518 dbSNP
rs1373494127 522 dbSNP
rs1467000976 525 dbSNP
rs569041081 526 dbSNP
rs536470118 529 dbSNP
rs1344330258 530 dbSNP
rs998266965 537 dbSNP
rs375653618 538 dbSNP
rs1018060244 540 dbSNP
rs1051204306 541 dbSNP
rs1392783887 552 dbSNP
rs1192438694 560 dbSNP
rs965502221 562 dbSNP
rs1323731297 566 dbSNP
rs976492562 574 dbSNP
rs1485103297 575 dbSNP
rs1260436072 579 dbSNP
rs889776470 584 dbSNP
rs554799696 586 dbSNP
rs1393678302 588 dbSNP
rs751385184 593 dbSNP
rs1233705457 595 dbSNP
rs1365964856 597 dbSNP
rs1025743721 600 dbSNP
rs1295411941 602 dbSNP
rs1033030224 605 dbSNP
rs1360095822 609 dbSNP
rs541481234 614 dbSNP
rs951027146 624 dbSNP
rs1303198963 625 dbSNP
rs116549404 631 dbSNP
rs1373521565 632 dbSNP
rs375416832 635 dbSNP
rs757165500 637 dbSNP
rs942237075 638 dbSNP
rs183572137 641 dbSNP
rs980674501 673 dbSNP
rs927445854 674 dbSNP
rs971578509 676 dbSNP
rs1427548149 678 dbSNP
rs1189063070 686 dbSNP
rs1261538086 686 dbSNP
rs1273052504 691 dbSNP
rs1256056405 693 dbSNP
rs981139651 706 dbSNP
rs117985426 707 dbSNP
rs1225594392 708 dbSNP
rs527402148 709 dbSNP
rs1313209278 713 dbSNP
rs1416422732 722 dbSNP
rs377262159 726 dbSNP
rs1312212028 733 dbSNP
rs958495697 736 dbSNP
rs188257452 737 dbSNP
rs1165635160 745 dbSNP
rs547166925 747 dbSNP
rs908885244 748 dbSNP
rs1185513731 752 dbSNP
rs1043025264 760 dbSNP
rs904435264 762 dbSNP
rs940594694 764 dbSNP
rs1438886017 772 dbSNP
rs1478655130 772 dbSNP
rs760200850 774 dbSNP
rs1036318867 775 dbSNP
rs923080396 776 dbSNP
rs933167523 781 dbSNP
rs1050261930 782 dbSNP
rs1274061898 783 dbSNP
rs1235305661 786 dbSNP
rs889842538 788 dbSNP
rs1292440695 789 dbSNP
rs3204926 791 dbSNP
rs144730701 794 dbSNP
rs1337437926 809 dbSNP
rs1430112451 811 dbSNP
rs1289628130 812 dbSNP
rs936534374 815 dbSNP
rs1390756372 816 dbSNP
rs1327511214 818 dbSNP
rs1459548744 844 dbSNP
rs1413299629 845 dbSNP
rs1392814101 861 dbSNP
rs1054832008 862 dbSNP
rs998360289 872 dbSNP
rs1356659804 877 dbSNP
rs866115085 878 dbSNP
rs1470822642 884 dbSNP
rs1230592506 885 dbSNP
rs1366089134 887 dbSNP
rs1180222215 888 dbSNP
rs1418592275 892 dbSNP
rs750682419 894 dbSNP
rs192938267 897 dbSNP
rs951079114 902 dbSNP
rs542863237 904 dbSNP
rs1272368642 905 dbSNP
rs1205468835 909 dbSNP
rs1054089 912 dbSNP
rs1282789907 915 dbSNP
rs983743502 919 dbSNP
rs1010903793 925 dbSNP
rs1016510110 937 dbSNP
rs963599704 940 dbSNP
rs1214492111 941 dbSNP
rs1260894741 945 dbSNP
rs1020518905 950 dbSNP
rs971526076 956 dbSNP
rs1002968378 960 dbSNP
rs1489092815 961 dbSNP
rs1304975213 964 dbSNP
rs11547320 974 dbSNP
rs1185490203 975 dbSNP
rs1256625192 984 dbSNP
rs980346757 993 dbSNP
rs1393241408 999 dbSNP
rs927466924 1005 dbSNP
rs1401672558 1006 dbSNP
rs938841393 1009 dbSNP
rs993346905 1015 dbSNP
rs1453668300 1018 dbSNP
rs1405744708 1020 dbSNP
rs1395827671 1021 dbSNP
rs11547319 1024 dbSNP
rs1452851328 1027 dbSNP
rs1252640984 1029 dbSNP
rs1400141753 1030 dbSNP
rs1159988831 1034 dbSNP
rs1491117230 1039 dbSNP
rs147932618 1040 dbSNP
rs1433169531 1042 dbSNP
rs1281884582 1043 dbSNP
rs1348479231 1052 dbSNP
rs1281894027 1058 dbSNP
rs115863700 1060 dbSNP
rs1043078089 1068 dbSNP
rs1270421694 1075 dbSNP
rs1328629085 1077 dbSNP
rs1432374619 1077 dbSNP
rs1316658611 1079 dbSNP
rs1399978551 1080 dbSNP
rs1450636289 1087 dbSNP
rs1444095331 1089 dbSNP
rs780187971 1092 dbSNP
rs1176030082 1097 dbSNP
rs146763722 1102 dbSNP
rs1373271521 1128 dbSNP
rs1168783023 1137 dbSNP
rs942622924 1138 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucGGAGGAAGGGa 5'
                     |||||||||| 
Target 5' -------cccuCCUCCUUCCCc 3'
1 - 15
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000326407.6 | 3UTR | CCCUCCUCCUUCCCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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