pre-miRNA Information
pre-miRNA hsa-mir-6799   
Genomic Coordinates chr19: 49791866 - 49791934
Description Homo sapiens miR-6799 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6799-5p
Sequence 6| GGGGAGGUGUGCAGGGCUGG |25
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1439869964 1 dbSNP
rs1206286688 3 dbSNP
rs767550469 6 dbSNP
rs1471732220 9 dbSNP
rs986966775 11 dbSNP
rs754316096 12 dbSNP
rs757819623 15 dbSNP
rs1473089544 16 dbSNP
Putative Targets

Gene Information
Gene Symbol MARVELD2   
Synonyms DFNB49, MARVD2, MRVLDC2, Tric
Description MARVEL domain containing 2
Transcript NM_001038603   
Expression
Putative miRNA Targets on MARVELD2
3'UTR of MARVELD2
(miRNA target sites are highlighted)
>MARVELD2|NM_001038603|3'UTR
   1 CGCTTATTTGAAACCACTTTATTTTTTTATTTTATTTTATTTTTTTGAGATGAAGTCTCGCTCTGTTACCCAGGCTGGAA
  81 TGCAGTGGCACAATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGTTCAAGCAATTAGCCTCCC
 161 CAGTAGCTGGGATTACAGGCGTGCGCTGCCACACCCCGCTAATTTTTGTATTTTTAGTAGAGACGAGGTTTCACCATGTT
 241 GGTCAGGCTGGGAAACTACTTTTTTTAAAAAATAGCAAGTTTACTATTTATTTACTGCCTTTTTAATGCTAGCCTCTGTG
 321 GTAGAGAAGCAAGCGCTTCCCAAATCAGCTTCCAATTGGTTTAACCAGTATGCAACATTAAAGATTTTACTCAGACATTT
 401 TTAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
 481 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggucGGGACGU-----GUGGAGGGg 5'
              | |||||     |||||||| 
Target 5' ggctCACTGCAACCTCCACCTCCCg 3'
98 - 122 156.00 -21.20
2
miRNA  3' ggUCGGGACGUGUGGAGGGg 5'
            |||  | :| :|||||| 
Target 5' caAGCAAT-TA-GCCTCCCc 3'
144 - 161 128.00 -18.30
3
miRNA  3' ggucgggaCGU--GUGGAGGGg 5'
                  |||  |:|:|||| 
Target 5' gtagagaaGCAAGCGCTTCCCa 3'
321 - 342 118.00 -15.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
228850 2 ClinVar
517529 3 ClinVar
907029 9 ClinVar
907030 98 ClinVar
354096 122 ClinVar
904780 158 ClinVar
354097 172 ClinVar
354098 185 ClinVar
354099 211 ClinVar
904781 267 ClinVar
904782 347 ClinVar
904783 377 ClinVar
COSN30139776 3 COSMIC
COSN31483762 11 COSMIC
COSN26983808 22 COSMIC
COSN31487977 28 COSMIC
COSN30478538 29 COSMIC
COSN30110839 42 COSMIC
COSN30470978 46 COSMIC
COSN30157894 54 COSMIC
COSN14176839 118 COSMIC
COSN27717583 142 COSMIC
COSN20209240 167 COSMIC
COSN30532748 264 COSMIC
COSN7951763 709 COSMIC
COSN37867 711 COSMIC
COSN26736325 1441 COSMIC
COSN15140056 1595 COSMIC
COSN16438322 1763 COSMIC
COSN20582546 1993 COSMIC
COSN4851627 2073 COSMIC
COSN20583807 2076 COSMIC
COSN14983434 2095 COSMIC
COSN26698937 2232 COSMIC
COSN20580019 2332 COSMIC
COSN18723780 2355 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs570049997 2 dbSNP
rs530892254 3 dbSNP
rs780204358 7 dbSNP
rs753965867 8 dbSNP
rs1193784046 10 dbSNP
rs755268242 11 dbSNP
rs1431701835 13 dbSNP
rs1479645963 17 dbSNP
rs1161687789 21 dbSNP
rs551484380 22 dbSNP
rs777404253 25 dbSNP
rs1305379209 26 dbSNP
rs746855195 30 dbSNP
rs771123160 30 dbSNP
rs549827782 31 dbSNP
rs955881293 40 dbSNP
rs770984761 43 dbSNP
rs1426695366 47 dbSNP
rs751906364 50 dbSNP
rs936196290 60 dbSNP
rs755408835 61 dbSNP
rs1268335673 75 dbSNP
rs1321134379 81 dbSNP
rs1285031839 90 dbSNP
rs1225554060 94 dbSNP
rs1361118881 97 dbSNP
rs568296893 98 dbSNP
rs948490448 99 dbSNP
rs1054708770 101 dbSNP
rs867209296 120 dbSNP
rs886060735 122 dbSNP
rs926788306 123 dbSNP
rs535297949 125 dbSNP
rs1245968327 136 dbSNP
rs945679573 142 dbSNP
rs1490728835 146 dbSNP
rs1417940601 156 dbSNP
rs374775664 158 dbSNP
rs898104727 163 dbSNP
rs756878174 172 dbSNP
rs1202635798 179 dbSNP
rs1051809388 182 dbSNP
rs886060736 185 dbSNP
rs867702570 186 dbSNP
rs1306741045 195 dbSNP
rs764933658 198 dbSNP
rs1017361769 199 dbSNP
rs1423227116 200 dbSNP
rs1034154570 203 dbSNP
rs1165182792 203 dbSNP
rs904382455 209 dbSNP
rs886060737 211 dbSNP
rs1461769302 223 dbSNP
rs565481782 225 dbSNP
rs1173147084 226 dbSNP
rs956017423 231 dbSNP
rs1308122308 240 dbSNP
rs748414843 242 dbSNP
rs1371406631 260 dbSNP
rs992901528 265 dbSNP
rs1442265551 266 dbSNP
rs142001621 267 dbSNP
rs983448114 272 dbSNP
rs1480176733 276 dbSNP
rs557400178 277 dbSNP
rs1249465792 297 dbSNP
rs1206360467 299 dbSNP
rs1342709871 315 dbSNP
rs575656482 319 dbSNP
rs192412701 335 dbSNP
rs969763971 336 dbSNP
rs1385132742 349 dbSNP
rs1313679235 351 dbSNP
rs966119868 355 dbSNP
rs1371624844 375 dbSNP
rs756402195 377 dbSNP
rs555796868 383 dbSNP
rs942179202 385 dbSNP
rs1162187541 393 dbSNP
rs973629723 396 dbSNP
rs1422243882 403 dbSNP
rs922078503 407 dbSNP
rs574267700 408 dbSNP
rs1247967992 410 dbSNP
rs377534287 421 dbSNP
rs1483244347 424 dbSNP
rs1268136212 442 dbSNP
rs1220099557 443 dbSNP
rs570445089 448 dbSNP
rs1266040731 451 dbSNP
rs1235287458 457 dbSNP
rs777697368 465 dbSNP
rs1315413319 476 dbSNP
rs1309392330 480 dbSNP
rs1410870167 483 dbSNP
rs1345226431 484 dbSNP
rs1301857773 489 dbSNP
rs749447074 491 dbSNP
rs1392262097 493 dbSNP
rs770703470 506 dbSNP
rs1482663866 508 dbSNP
rs80270395 526 dbSNP
rs1160794117 537 dbSNP
rs745610060 561 dbSNP
rs1244909095 564 dbSNP
rs1428271689 571 dbSNP
rs559964994 572 dbSNP
rs1490839340 573 dbSNP
rs115103672 586 dbSNP
rs1167805666 590 dbSNP
rs1039075598 593 dbSNP
rs1262745663 596 dbSNP
rs545533825 597 dbSNP
rs937069617 606 dbSNP
rs1332231311 609 dbSNP
rs1000429938 625 dbSNP
rs1381195030 627 dbSNP
rs1382082906 629 dbSNP
rs1031543768 630 dbSNP
rs1174001402 639 dbSNP
rs891668585 640 dbSNP
rs995287960 653 dbSNP
rs563743932 654 dbSNP
rs1283088671 657 dbSNP
rs1192327913 661 dbSNP
rs1426835273 664 dbSNP
rs1448876989 665 dbSNP
rs1263869152 669 dbSNP
rs1209600004 673 dbSNP
rs775302074 674 dbSNP
rs1261477865 678 dbSNP
rs1206018119 680 dbSNP
rs1363643947 681 dbSNP
rs969731423 685 dbSNP
rs1270155796 686 dbSNP
rs979789499 697 dbSNP
rs534654560 698 dbSNP
rs530812190 702 dbSNP
rs1008568376 706 dbSNP
rs1299262898 711 dbSNP
rs1435172526 746 dbSNP
rs1404963661 751 dbSNP
rs1018907247 760 dbSNP
rs1415989868 762 dbSNP
rs1402580833 763 dbSNP
rs1167273733 783 dbSNP
rs1460340042 788 dbSNP
rs1362189061 794 dbSNP
rs1215923498 810 dbSNP
rs1016684743 814 dbSNP
rs962529926 818 dbSNP
rs973938342 825 dbSNP
rs1241569944 830 dbSNP
rs1029067197 833 dbSNP
rs1189823655 840 dbSNP
rs919438970 852 dbSNP
rs1443369335 858 dbSNP
rs1272660679 881 dbSNP
rs1194433684 890 dbSNP
rs760221748 903 dbSNP
rs1203761160 938 dbSNP
rs1264922042 945 dbSNP
rs185005068 949 dbSNP
rs987700288 965 dbSNP
rs1312489424 971 dbSNP
rs1449690290 978 dbSNP
rs1340845875 985 dbSNP
rs1242527938 1008 dbSNP
rs1476287289 1016 dbSNP
rs913418336 1022 dbSNP
rs1169103174 1035 dbSNP
rs1383402291 1041 dbSNP
rs1165229012 1046 dbSNP
rs1473288287 1047 dbSNP
rs1189642698 1049 dbSNP
rs1232506237 1053 dbSNP
rs375061908 1054 dbSNP
rs561872146 1062 dbSNP
rs1484223037 1063 dbSNP
rs1415042610 1065 dbSNP
rs1253208136 1067 dbSNP
rs943361136 1080 dbSNP
rs188891340 1081 dbSNP
rs1387069163 1083 dbSNP
rs904603099 1095 dbSNP
rs1229530952 1099 dbSNP
rs936103593 1103 dbSNP
rs1053331925 1111 dbSNP
rs1439799060 1118 dbSNP
rs370790794 1136 dbSNP
rs1321845515 1139 dbSNP
rs1404190352 1151 dbSNP
rs1363637683 1153 dbSNP
rs891642129 1155 dbSNP
rs936997191 1162 dbSNP
rs1406005755 1165 dbSNP
rs11361474 1173 dbSNP
rs35551446 1173 dbSNP
rs568061187 1173 dbSNP
rs868151122 1173 dbSNP
rs878934755 1173 dbSNP
rs1014157839 1180 dbSNP
rs1045660227 1190 dbSNP
rs1223189381 1191 dbSNP
rs1023594491 1192 dbSNP
rs1366549055 1193 dbSNP
rs1223580175 1194 dbSNP
rs1284706150 1195 dbSNP
rs1326954608 1198 dbSNP
rs1226131857 1203 dbSNP
rs1207986583 1204 dbSNP
rs1330960320 1207 dbSNP
rs919659504 1225 dbSNP
rs1343616926 1237 dbSNP
rs1448457256 1238 dbSNP
rs529249558 1239 dbSNP
rs1344635037 1244 dbSNP
rs1246337402 1245 dbSNP
rs1458954941 1254 dbSNP
rs1389646701 1255 dbSNP
rs1176229977 1256 dbSNP
rs1479646129 1257 dbSNP
rs905810740 1261 dbSNP
rs1001197306 1262 dbSNP
rs1016609828 1271 dbSNP
rs547662692 1276 dbSNP
rs962739582 1277 dbSNP
rs1466022503 1292 dbSNP
rs1472320140 1295 dbSNP
rs1159598772 1296 dbSNP
rs1202842798 1298 dbSNP
rs1387788352 1300 dbSNP
rs565875914 1301 dbSNP
rs1046846673 1306 dbSNP
rs886944362 1312 dbSNP
rs547216378 1313 dbSNP
rs1268557243 1320 dbSNP
rs1008101097 1321 dbSNP
rs1323380779 1324 dbSNP
rs1348921029 1325 dbSNP
rs1041350731 1330 dbSNP
rs1304614006 1332 dbSNP
rs1468593329 1333 dbSNP
rs1361208059 1338 dbSNP
rs1177436817 1342 dbSNP
rs565556080 1343 dbSNP
rs1186181343 1366 dbSNP
rs181631277 1370 dbSNP
rs539222731 1377 dbSNP
rs551067866 1378 dbSNP
rs557855862 1391 dbSNP
rs1288937553 1393 dbSNP
rs1210553017 1395 dbSNP
rs1026874807 1397 dbSNP
rs1224949894 1398 dbSNP
rs906401651 1407 dbSNP
rs1342907856 1408 dbSNP
rs1249911957 1412 dbSNP
rs1003385923 1419 dbSNP
rs950893278 1423 dbSNP
rs1020427491 1431 dbSNP
rs1381615389 1437 dbSNP
rs536689015 1442 dbSNP
rs1441907830 1453 dbSNP
rs761391933 1456 dbSNP
rs1366045803 1465 dbSNP
rs981669383 1466 dbSNP
rs912138833 1467 dbSNP
rs186495444 1468 dbSNP
rs1163008058 1474 dbSNP
rs1182281362 1480 dbSNP
rs974675827 1482 dbSNP
rs1386207012 1483 dbSNP
rs925983929 1490 dbSNP
rs991086642 1523 dbSNP
rs1483428124 1526 dbSNP
rs144504056 1530 dbSNP
rs1053229818 1534 dbSNP
rs913332567 1536 dbSNP
rs1242686111 1544 dbSNP
rs1368319266 1544 dbSNP
rs535312783 1546 dbSNP
rs1310401363 1547 dbSNP
rs35672884 1547 dbSNP
rs368101257 1547 dbSNP
rs1408681005 1551 dbSNP
rs1410905654 1557 dbSNP
rs368020197 1563 dbSNP
rs1337438013 1565 dbSNP
rs746971684 1570 dbSNP
rs1445781079 1571 dbSNP
rs1400883432 1575 dbSNP
rs956500061 1576 dbSNP
rs1247910731 1582 dbSNP
rs1272752430 1588 dbSNP
rs1164984091 1591 dbSNP
rs1341791913 1592 dbSNP
rs982492500 1593 dbSNP
rs1196432443 1594 dbSNP
rs1184078289 1595 dbSNP
rs989212703 1596 dbSNP
rs1252803029 1604 dbSNP
rs1268070333 1619 dbSNP
rs1208178752 1634 dbSNP
rs553668329 1639 dbSNP
rs1215258823 1648 dbSNP
rs866936734 1649 dbSNP
rs1290672094 1670 dbSNP
rs1229380403 1672 dbSNP
rs943854873 1673 dbSNP
rs1187393679 1686 dbSNP
rs1299775764 1690 dbSNP
rs1384598455 1692 dbSNP
rs1244304730 1695 dbSNP
rs1293760443 1712 dbSNP
rs1392193939 1712 dbSNP
rs1456441932 1714 dbSNP
rs1183278 1722 dbSNP
rs1167175800 1726 dbSNP
rs1161167788 1731 dbSNP
rs545572446 1747 dbSNP
rs932600292 1748 dbSNP
rs1196602690 1749 dbSNP
rs1434996359 1757 dbSNP
rs1050386766 1758 dbSNP
rs1461212033 1777 dbSNP
rs1463757681 1783 dbSNP
rs781144081 1789 dbSNP
rs1011625513 1790 dbSNP
rs1038412337 1793 dbSNP
rs866549811 1795 dbSNP
rs189780721 1798 dbSNP
rs575681041 1799 dbSNP
rs1433690007 1810 dbSNP
rs1362638354 1824 dbSNP
rs1322092220 1833 dbSNP
rs1457595011 1838 dbSNP
rs1401163770 1842 dbSNP
rs1170745888 1844 dbSNP
rs542699770 1851 dbSNP
rs955335106 1856 dbSNP
rs1009019298 1863 dbSNP
rs561312366 1866 dbSNP
rs529205540 1872 dbSNP
rs1295194473 1880 dbSNP
rs1461153572 1895 dbSNP
rs748245684 1898 dbSNP
rs1019073495 1904 dbSNP
rs1202533005 1905 dbSNP
rs964897886 1910 dbSNP
rs1253319151 1924 dbSNP
rs974981200 1930 dbSNP
rs1339387638 1941 dbSNP
rs982440030 1941 dbSNP
rs908267675 1945 dbSNP
rs925925664 1950 dbSNP
rs1311619532 1960 dbSNP
rs180807308 1961 dbSNP
rs1167837574 1968 dbSNP
rs943819700 1976 dbSNP
rs1392036805 1977 dbSNP
rs1199946938 2009 dbSNP
rs989249179 2011 dbSNP
rs1264298794 2018 dbSNP
rs1463091429 2022 dbSNP
rs1169469098 2023 dbSNP
rs1472627444 2030 dbSNP
rs1366914590 2039 dbSNP
rs976960878 2041 dbSNP
rs921116025 2047 dbSNP
rs1187039326 2052 dbSNP
rs1203560388 2053 dbSNP
rs913311783 2060 dbSNP
rs1481790094 2082 dbSNP
rs932519051 2085 dbSNP
rs1247838527 2096 dbSNP
rs1053703098 2100 dbSNP
rs950114164 2105 dbSNP
rs1045553695 2117 dbSNP
rs1340790980 2130 dbSNP
rs1307353075 2134 dbSNP
rs1193385000 2167 dbSNP
rs1407843918 2174 dbSNP
rs1374442930 2176 dbSNP
rs1041763236 2193 dbSNP
rs559177068 2194 dbSNP
rs927122331 2221 dbSNP
rs1411941661 2227 dbSNP
rs9885314 2230 dbSNP
rs1473338478 2235 dbSNP
rs1411605058 2237 dbSNP
rs1180468618 2239 dbSNP
rs1476755253 2251 dbSNP
rs937217671 2267 dbSNP
rs1175165405 2272 dbSNP
rs1038271628 2274 dbSNP
rs1406703193 2275 dbSNP
rs1253136141 2280 dbSNP
rs1470939449 2288 dbSNP
rs898434714 2299 dbSNP
rs1287324980 2301 dbSNP
rs9885315 2301 dbSNP
rs929650342 2304 dbSNP
rs1356789079 2315 dbSNP
rs1287560029 2317 dbSNP
rs1382582914 2320 dbSNP
rs1352306277 2336 dbSNP
rs1435882771 2337 dbSNP
rs1348141992 2342 dbSNP
rs1047207926 2344 dbSNP
rs1406243621 2344 dbSNP
rs1297911709 2345 dbSNP
rs890838755 2346 dbSNP
rs1157464696 2347 dbSNP
rs1329635509 2348 dbSNP
rs1057473554 2351 dbSNP
rs867883118 2352 dbSNP
rs868257220 2353 dbSNP
rs200146717 2355 dbSNP
rs1242557934 2356 dbSNP
rs1466091295 2356 dbSNP
rs375559227 2356 dbSNP
rs746994253 2356 dbSNP
rs1007939779 2357 dbSNP
rs1326232698 2359 dbSNP
rs1400985065 2361 dbSNP
rs1310417947 2366 dbSNP
rs1280610808 2368 dbSNP
rs1278024750 2370 dbSNP
rs201073536 2371 dbSNP
rs1235702050 2372 dbSNP
rs1268073091 2377 dbSNP
rs1486361199 2378 dbSNP
rs1207335596 2379 dbSNP
rs1277565751 2381 dbSNP
rs894641173 2382 dbSNP
rs1295690929 2383 dbSNP
rs1013072175 2385 dbSNP
rs1256623451 2402 dbSNP
rs1263398685 2402 dbSNP
rs1446238561 2403 dbSNP
rs1361441180 2414 dbSNP
rs1335392500 2415 dbSNP
rs1431143373 2424 dbSNP
rs1019042428 2431 dbSNP
rs532973277 2435 dbSNP
rs1166168842 2448 dbSNP
rs1429332065 2458 dbSNP
rs1181106865 2466 dbSNP
rs1419765578 2466 dbSNP
rs551153969 2467 dbSNP
rs569698015 2468 dbSNP
rs1033254153 2471 dbSNP
rs535767436 2474 dbSNP
rs1211435165 2482 dbSNP
rs769977161 2484 dbSNP
rs952986581 2491 dbSNP
rs1272651148 2493 dbSNP
rs1003809585 2494 dbSNP
rs1015271295 2496 dbSNP
rs556951636 2502 dbSNP
rs988787284 2508 dbSNP
rs1020710995 2509 dbSNP
rs1226990905 2519 dbSNP
rs1381728810 2519 dbSNP
rs971440495 2520 dbSNP
rs1409823603 2521 dbSNP
rs1290473277 2522 dbSNP
rs981540054 2525 dbSNP
rs927384435 2527 dbSNP
rs1431074141 2529 dbSNP
rs143560429 2535 dbSNP
rs1163571513 2539 dbSNP
rs767965457 2556 dbSNP
rs976533280 2557 dbSNP
rs1188381192 2560 dbSNP
rs548738906 2560 dbSNP
rs771607555 2560 dbSNP
rs773723949 2560 dbSNP
rs921055010 2561 dbSNP
rs1480974327 2574 dbSNP
rs753163682 2585 dbSNP
rs1219565380 2597 dbSNP
rs989342733 2602 dbSNP
rs915143729 2609 dbSNP
rs756280174 2619 dbSNP
rs1046694053 2625 dbSNP
rs1290710584 2627 dbSNP
rs1226656829 2629 dbSNP
rs1392646095 2637 dbSNP
rs536740790 2638 dbSNP
rs943768387 2658 dbSNP
rs1042082309 2660 dbSNP
rs924637626 2665 dbSNP
rs1456479159 2667 dbSNP
rs938719603 2674 dbSNP
rs186086141 2675 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggucGGGACGU-----GUGGAGGGg 5'
              | |||||     |||||||| 
Target 5' ggcuCACUGCAACCUCCACCUCCCg 3'
10 - 34
2
miRNA  3' ggucgggacGUG-UGGAGggg 5'
                   ||| |:|||   
Target 5' ---------CACAAUCUCggc 3'
1 - 12
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000325631.5 | 3UTR | CACAAUCUCGGCUCACUGCAACCUCCACCUCCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
495 hsa-miR-6799-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057844 SLC30A7 solute carrier family 30 member 7 2 2
MIRT180622 CRY2 cryptochrome circadian clock 2 2 2
MIRT254627 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT294657 ZNF548 zinc finger protein 548 2 2
MIRT386443 CCL22 C-C motif chemokine ligand 22 2 2
MIRT441466 BEST3 bestrophin 3 2 2
MIRT446753 ZNF491 zinc finger protein 491 2 2
MIRT449226 RAD51B RAD51 paralog B 2 2
MIRT451096 ZNF584 zinc finger protein 584 2 2
MIRT451563 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451685 C1RL complement C1r subcomponent like 2 2
MIRT451739 CES3 carboxylesterase 3 2 2
MIRT451761 ZNF611 zinc finger protein 611 2 6
MIRT452415 QDPR quinoid dihydropteridine reductase 2 2
MIRT452566 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452860 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452925 DISC1 disrupted in schizophrenia 1 2 2
MIRT453051 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453102 HOXC4 homeobox C4 2 2
MIRT453256 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453299 ZNF394 zinc finger protein 394 2 2
MIRT453474 PITPNM3 PITPNM family member 3 2 2
MIRT453542 PRR12 proline rich 12 2 2
MIRT453597 ZNF557 zinc finger protein 557 2 2
MIRT453798 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453939 XRCC6 X-ray repair cross complementing 6 2 6
MIRT453990 CECR1 adenosine deaminase 2 2 2
MIRT454087 TMEM209 transmembrane protein 209 2 2
MIRT454658 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454756 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT454846 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT455122 TBC1D25 TBC1 domain family member 25 2 2
MIRT455164 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455312 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456472 SERAC1 serine active site containing 1 2 2
MIRT456555 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456640 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456721 TMEM239 transmembrane protein 239 2 4
MIRT457155 MXRA7 matrix remodeling associated 7 2 2
MIRT457489 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457689 ZNF587 zinc finger protein 587 2 2
MIRT457787 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT458001 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458133 TLCD2 TLC domain containing 2 2 2
MIRT458494 MARVELD2 MARVEL domain containing 2 2 2
MIRT458929 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459029 ZNF490 zinc finger protein 490 2 4
MIRT459121 FADS6 fatty acid desaturase 6 2 2
MIRT459319 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459363 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459418 FAM83B family with sequence similarity 83 member B 2 2
MIRT459980 RFT1 RFT1 homolog 2 2
MIRT460139 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460208 FGFR4 fibroblast growth factor receptor 4 2 2
MIRT460443 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460484 FAM105A family with sequence similarity 105 member A 2 6
MIRT460589 FEM1A fem-1 homolog A 2 2
MIRT460647 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460924 NOA1 nitric oxide associated 1 2 4
MIRT461077 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461161 SLC11A2 solute carrier family 11 member 2 2 6
MIRT461456 SLC19A3 solute carrier family 19 member 3 2 6
MIRT461570 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT461594 DPH2 DPH2 homolog 2 2
MIRT461858 ZNF317 zinc finger protein 317 2 2
MIRT461950 C3 complement C3 2 4
MIRT462182 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462449 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT462769 ZNF8 zinc finger protein 8 2 2
MIRT463134 ZNF451 zinc finger protein 451 2 8
MIRT463856 WNT7B Wnt family member 7B 2 2
MIRT463984 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT464254 VCL vinculin 2 2
MIRT464315 UST uronyl 2-sulfotransferase 2 2
MIRT464416 UNC13A unc-13 homolog A 2 6
MIRT464820 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465465 TOR2A torsin family 2 member A 2 2
MIRT466079 TMEM184C transmembrane protein 184C 2 2
MIRT466522 TBXA2R thromboxane A2 receptor 2 2
MIRT467005 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467076 SRRD SRR1 domain containing 2 2
MIRT468573 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT469559 RARA retinoic acid receptor alpha 2 2
MIRT469745 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470769 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470881 PLXND1 plexin D1 2 2
MIRT470981 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471221 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471251 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471301 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471470 PDE7B phosphodiesterase 7B 2 2
MIRT471769 NUP43 nucleoporin 43 2 4
MIRT471824 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472816 MTMR10 myotubularin related protein 10 2 6
MIRT473071 MORN4 MORN repeat containing 4 2 2
MIRT473493 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT473509 MAZ MYC associated zinc finger protein 2 2
MIRT473570 MAT2A methionine adenosyltransferase 2A 2 6
MIRT473995 LRRC20 leucine rich repeat containing 20 2 2
MIRT474532 KLHDC8A kelch domain containing 8A 2 2
MIRT474996 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475368 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT475750 HDLBP high density lipoprotein binding protein 2 2
MIRT476796 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477072 FAM208A family with sequence similarity 208 member A 2 6
MIRT477302 EPHB2 EPH receptor B2 2 2
MIRT477947 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478288 DDX19A DEAD-box helicase 19A 2 4
MIRT478314 DDN dendrin 2 2
MIRT478475 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478626 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478839 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479011 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479169 CLSPN claspin 2 2
MIRT479519 CDCA4 cell division cycle associated 4 2 2
MIRT481379 ATG12 autophagy related 12 2 2
MIRT481731 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482387 AEN apoptosis enhancing nuclease 2 2
MIRT482455 ADAR adenosine deaminase, RNA specific 2 4
MIRT483024 KHSRP KH-type splicing regulatory protein 2 4
MIRT483805 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT484338 EPN1 epsin 1 2 4
MIRT486088 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486307 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486651 ZNF28 zinc finger protein 28 2 2
MIRT486887 TSPYL4 TSPY like 4 2 2
MIRT487127 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487548 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487677 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489255 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489279 RBM8A RNA binding motif protein 8A 2 8
MIRT489399 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489502 CRLF3 cytokine receptor like factor 3 2 4
MIRT489695 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT489775 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489919 RTKN rhotekin 2 2
MIRT490174 TMEM63C transmembrane protein 63C 2 2
MIRT490523 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT491202 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491261 DHX40 DEAH-box helicase 40 2 2
MIRT491390 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491550 YAE1D1 Yae1 domain containing 1 2 2
MIRT492724 PHF12 PHD finger protein 12 2 2
MIRT493873 FAM73B mitoguardin 2 2 4
MIRT493891 FAM43A family with sequence similarity 43 member A 2 4
MIRT494464 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT498589 KRT8 keratin 8 2 2
MIRT498728 SNTN sentan, cilia apical structure protein 2 6
MIRT499984 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT501424 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT503419 SLC25A45 solute carrier family 25 member 45 2 6
MIRT504303 ZNF280B zinc finger protein 280B 2 2
MIRT507978 BCL2L13 BCL2 like 13 2 4
MIRT508891 METTL14 methyltransferase like 14 2 2
MIRT509629 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510109 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510140 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510306 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510625 TMEM167A transmembrane protein 167A 2 4
MIRT511022 NRF1 nuclear respiratory factor 1 2 2
MIRT512225 ATXN3 ataxin 3 2 8
MIRT514345 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515018 SUMF2 sulfatase modifying factor 2 2 2
MIRT515136 ZNF799 zinc finger protein 799 2 4
MIRT515251 DUSP28 dual specificity phosphatase 28 2 2
MIRT516209 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516672 ZNF860 zinc finger protein 860 2 4
MIRT516969 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT518379 ZNF250 zinc finger protein 250 2 2
MIRT518939 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519681 ZNF70 zinc finger protein 70 2 2
MIRT519910 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT519949 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520325 UBXN2A UBX domain protein 2A 2 2
MIRT520614 TMEM41B transmembrane protein 41B 2 2
MIRT520667 TMEM11 transmembrane protein 11 2 2
MIRT520857 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521447 RAD51 RAD51 recombinase 2 2
MIRT521562 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT522335 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522913 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523678 FOPNL FGFR1OP N-terminal like 2 2
MIRT523721 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523873 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524054 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524176 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524857 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT524933 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT525684 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT526834 PHC1 polyhomeotic homolog 1 2 2
MIRT540684 BMP3 bone morphogenetic protein 3 2 2
MIRT541759 KLF8 Kruppel like factor 8 2 2
MIRT550715 PMPCA peptidase, mitochondrial processing alpha subunit 2 6
MIRT561754 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562826 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562906 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564456 SLC35E2 solute carrier family 35 member E2 2 5
MIRT565231 TRAF6 TNF receptor associated factor 6 2 2
MIRT569117 ONECUT3 one cut homeobox 3 2 2
MIRT569229 SUSD1 sushi domain containing 1 2 2
MIRT569521 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570280 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570851 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571319 TPCN2 two pore segment channel 2 2 2
MIRT572081 EXOC8 exocyst complex component 8 2 2
MIRT572123 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573489 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573655 HES6 hes family bHLH transcription factor 6 2 2
MIRT574348 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576505 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608044 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT609312 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT613665 KIAA1210 KIAA1210 2 2
MIRT615639 ATF6 activating transcription factor 6 2 2
MIRT618578 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618866 MBL2 mannose binding lectin 2 2 2
MIRT618966 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619177 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620303 AQP6 aquaporin 6 2 2
MIRT620688 RFTN2 raftlin family member 2 2 2
MIRT621643 UBXN2B UBX domain protein 2B 2 2
MIRT622001 STK4 serine/threonine kinase 4 2 2
MIRT622426 NUDT19 nudix hydrolase 19 2 2
MIRT622577 PRRG4 proline rich and Gla domain 4 2 2
MIRT622808 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624790 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624972 ZNF665 zinc finger protein 665 2 4
MIRT625483 SMAD9 SMAD family member 9 2 2
MIRT626601 ACAA2 acetyl-CoA acyltransferase 2 2 2
MIRT626713 TRIM65 tripartite motif containing 65 2 2
MIRT626979 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627491 STRIP2 striatin interacting protein 2 2 2
MIRT628508 ZNF878 zinc finger protein 878 2 2
MIRT628538 ZNF701 zinc finger protein 701 2 2
MIRT628595 TMEM251 transmembrane protein 251 2 2
MIRT628822 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628901 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628963 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629013 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629064 KIF1C kinesin family member 1C 2 2
MIRT629194 PAPOLA poly(A) polymerase alpha 2 2
MIRT629350 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629452 WIZ widely interspaced zinc finger motifs 2 2
MIRT629700 XKR4 XK related 4 2 2
MIRT629742 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629901 SPATA5 spermatogenesis associated 5 2 2
MIRT629958 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630028 MTL5 testis expressed metallothionein like protein 2 2
MIRT630394 MYH9 myosin heavy chain 9 2 4
MIRT631137 SYNJ2 synaptojanin 2 2 2
MIRT631388 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631475 KLHL21 kelch like family member 21 2 2
MIRT631563 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631620 PCDHB11 protocadherin beta 11 2 2
MIRT631939 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632450 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632660 NAV1 neuron navigator 1 2 2
MIRT632745 MED28 mediator complex subunit 28 2 2
MIRT632835 IGF1 insulin like growth factor 1 2 2
MIRT632914 FRRS1 ferric chelate reductase 1 2 2
MIRT633034 DNAL1 dynein axonemal light chain 1 2 2
MIRT633385 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633445 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633868 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT633913 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT633955 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634047 NUP155 nucleoporin 155 2 2
MIRT634271 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634378 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634440 PDE7A phosphodiesterase 7A 2 2
MIRT634577 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT634701 DSEL dermatan sulfate epimerase-like 2 2
MIRT634773 CD3D CD3d molecule 2 2
MIRT635029 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT636075 ZNF280C zinc finger protein 280C 2 2
MIRT636705 ARSK arylsulfatase family member K 2 2
MIRT637444 ZNF324B zinc finger protein 324B 2 2
MIRT637587 PLD6 phospholipase D family member 6 2 2
MIRT637677 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT638358 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638601 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638828 CRTAP cartilage associated protein 2 2
MIRT638882 CEP97 centrosomal protein 97 2 4
MIRT639659 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640264 FANCA Fanconi anemia complementation group A 2 2
MIRT644998 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645064 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646954 UPK3BL uroplakin 3B like 1 2 2
MIRT648304 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649048 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649890 SLFN12L schlafen family member 12 like 2 2
MIRT650201 DOCK7 dedicator of cytokinesis 7 2 2
MIRT652051 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT654794 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655926 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT657717 GPC4 glypican 4 2 2
MIRT659306 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659848 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT661312 CPM carboxypeptidase M 2 2
MIRT661480 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661911 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT661978 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 4
MIRT662071 ZNF284 zinc finger protein 284 2 2
MIRT662497 ANGPT4 angiopoietin 4 2 2
MIRT662666 LRRC47 leucine rich repeat containing 47 2 2
MIRT663171 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663382 ZNF770 zinc finger protein 770 2 4
MIRT663997 WDR75 WD repeat domain 75 2 2
MIRT664164 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT664494 POLR3K RNA polymerase III subunit K 2 2
MIRT665062 CCDC77 coiled-coil domain containing 77 2 2
MIRT665085 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665722 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665927 TBC1D19 TBC1 domain family member 19 2 4
MIRT666094 SSR1 signal sequence receptor subunit 1 2 2
MIRT666847 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667387 MOB1B MOB kinase activator 1B 2 2
MIRT667580 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667901 ING1 inhibitor of growth family member 1 2 2
MIRT667982 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668202 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668283 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668389 FAT3 FAT atypical cadherin 3 2 2
MIRT669002 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669456 ATL3 atlastin GTPase 3 2 2
MIRT669489 ARL4C ADP ribosylation factor like GTPase 4C 2 2
MIRT669664 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669894 KIAA0754 KIAA0754 2 4
MIRT669980 SSR3 signal sequence receptor subunit 3 2 2
MIRT670157 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670242 TRIM13 tripartite motif containing 13 2 2
MIRT670279 CBY3 chibby family member 3 2 2
MIRT670360 ULBP3 UL16 binding protein 3 2 4
MIRT670632 BVES blood vessel epicardial substance 2 2
MIRT670736 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670775 TRIM66 tripartite motif containing 66 2 2
MIRT670918 DESI1 desumoylating isopeptidase 1 2 2
MIRT671221 CLSTN1 calsyntenin 1 2 2
MIRT671370 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT671403 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671433 TOX4 TOX high mobility group box family member 4 2 2
MIRT671658 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT672040 SMTNL2 smoothelin like 2 2 2
MIRT672142 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672403 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672577 RNF24 ring finger protein 24 2 2
MIRT672798 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673204 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673377 ZNF124 zinc finger protein 124 2 2
MIRT673501 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673858 CAPN7 calpain 7 2 2
MIRT673932 ZNF500 zinc finger protein 500 2 2
MIRT673987 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674087 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674129 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674303 THAP5 THAP domain containing 5 2 2
MIRT674375 POLR3D RNA polymerase III subunit D 2 2
MIRT674647 NKRF NFKB repressing factor 2 2
MIRT674668 PLCE1 phospholipase C epsilon 1 2 2
MIRT674784 NPR1 natriuretic peptide receptor 1 2 2
MIRT674898 RASSF9 Ras association domain family member 9 2 2
MIRT675022 SNX1 sorting nexin 1 2 2
MIRT675347 KLHL26 kelch like family member 26 2 2
MIRT675421 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675502 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675742 AHR aryl hydrocarbon receptor 2 2
MIRT675866 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675996 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676218 TMEM91 transmembrane protein 91 2 2
MIRT677304 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677835 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT677873 ABI2 abl interactor 2 2 2
MIRT677971 ITGB3 integrin subunit beta 3 2 2
MIRT678181 CRCP CGRP receptor component 2 2
MIRT678279 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679466 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679518 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679918 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680035 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680251 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680284 AKIP1 A-kinase interacting protein 1 2 2
MIRT680504 PRIM2 DNA primase subunit 2 2 2
MIRT680634 KIAA1456 KIAA1456 2 2
MIRT680824 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680876 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT681003 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681045 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681125 INTS7 integrator complex subunit 7 2 2
MIRT681163 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681225 DUSP19 dual specificity phosphatase 19 2 2
MIRT681308 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681345 BRI3BP BRI3 binding protein 2 2
MIRT681612 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681782 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT682088 ITGA3 integrin subunit alpha 3 2 4
MIRT682141 SMS spermine synthase 2 2
MIRT682167 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682224 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682347 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT682371 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682540 EXOSC2 exosome component 2 2 2
MIRT682625 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683546 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT683647 ZNF695 zinc finger protein 695 2 2
MIRT684446 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684860 ZNF749 zinc finger protein 749 2 2
MIRT684960 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685051 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685099 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685814 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685915 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686669 TMEM120B transmembrane protein 120B 2 2
MIRT686865 SLC25A32 solute carrier family 25 member 32 2 2
MIRT686959 SFT2D2 SFT2 domain containing 2 2 2
MIRT687122 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687743 KIAA1328 KIAA1328 2 2
MIRT688066 GLUL glutamate-ammonia ligase 2 2
MIRT688773 CDH7 cadherin 7 2 2
MIRT689688 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689743 PRR13 proline rich 13 2 2
MIRT689939 MANSC1 MANSC domain containing 1 2 2
MIRT690096 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690194 C5orf45 MRN complex interacting protein 2 2
MIRT690252 CAMLG calcium modulating ligand 2 2
MIRT690423 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT691115 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691235 DFNB59 pejvakin 2 2
MIRT691302 ZNF681 zinc finger protein 681 2 2
MIRT691371 GP5 glycoprotein V platelet 2 2
MIRT691806 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692150 CEP104 centrosomal protein 104 2 2
MIRT692351 AGTRAP angiotensin II receptor associated protein 2 2
MIRT692579 NCMAP non-compact myelin associated protein 2 2
MIRT692653 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692749 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693098 SCNM1 sodium channel modifier 1 2 2
MIRT693300 SYTL3 synaptotagmin like 3 2 2
MIRT693393 ZNF460 zinc finger protein 460 2 2
MIRT693491 MOB3A MOB kinase activator 3A 2 2
MIRT693538 ZNF708 zinc finger protein 708 2 2
MIRT693566 PIGR polymeric immunoglobulin receptor 2 2
MIRT694378 MTA1 metastasis associated 1 2 2
MIRT694493 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694738 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT695076 ZNF17 zinc finger protein 17 2 2
MIRT695402 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695460 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695727 ZNF117 zinc finger protein 117 2 2
MIRT695902 MED16 mediator complex subunit 16 2 2
MIRT696266 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696567 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696649 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696795 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696825 PLLP plasmolipin 2 2
MIRT696969 CCDC80 coiled-coil domain containing 80 2 2
MIRT697089 GPKOW G-patch domain and KOW motifs 2 2
MIRT697167 INMT indolethylamine N-methyltransferase 2 2
MIRT697210 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697336 ZNF641 zinc finger protein 641 2 2
MIRT697586 YME1L1 YME1 like 1 ATPase 2 2
MIRT698623 TES testin LIM domain protein 2 2
MIRT698954 SPAST spastin 2 2
MIRT699088 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699436 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699558 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700330 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700362 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700463 PURB purine rich element binding protein B 2 2
MIRT701684 MYADM myeloid associated differentiation marker 2 2
MIRT701762 MSL2 MSL complex subunit 2 2 2
MIRT703183 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703210 GOLGA3 golgin A3 2 2
MIRT703366 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703430 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703606 FBXO45 F-box protein 45 2 2
MIRT703705 FAM134A reticulophagy regulator family member 2 2 2
MIRT703815 EVI5 ecotropic viral integration site 5 2 2
MIRT703919 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704239 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704650 CLCC1 chloride channel CLIC like 1 2 2
MIRT705165 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705535 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705665 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706148 ZNF674 zinc finger protein 674 2 2
MIRT706477 SNX27 sorting nexin family member 27 2 2
MIRT706646 SMIM19 small integral membrane protein 19 2 2
MIRT708259 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708842 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710442 BTNL3 butyrophilin like 3 2 2
MIRT711331 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT712438 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT714990 TSPAN11 tetraspanin 11 2 2
MIRT717405 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT722229 ZNF503 zinc finger protein 503 2 2
MIRT725389 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6799-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6799-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6799-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6799-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6799-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6799-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-6799-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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