pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CCPG1   
Synonyms CPR8
Description cell cycle progression 1
Transcript NM_004748   
Other Transcripts NM_020739   
Expression
Putative miRNA Targets on CCPG1
3'UTR of CCPG1
(miRNA target sites are highlighted)
>CCPG1|NM_004748|3'UTR
   1 CATTTGTAGATTGGATAGCATTTTTATGATTTGATGAGTTTCTTGTAAGGTTACCGTTTCTAAGAGTTGTGCTTTATGGC
  81 CACTGAGAGAATTCAGAATAAATTGAAAGATGGAGTCTAAAAATTATTAGCTGTTACAAATGGAACATTTCATTATAACG
 161 TGATCACTTTGACTTGAGCAAATGGTTTAATTTTTATCTTAAAAATCAGTTAAGAATATATAAAATCCTACTTTGGCCAA
 241 GTTTGTTTCTTTTCATTATAGTTTATATGAAAAGATCACCTTAAGTGAAATTATTTTCCTTTAATCTTTTATGTATTTAT
 321 TCACTTTTGGAAGCTAGGAATGAGCAACACAAATTTTACTCTGAAGTCAGAAGAGCTCATATATAATAATTCTAATGTCC
 401 CACCTATTTTCACTTGTCCATTCCATGTACCAGCTTAGTTATGATACTTAGTCACATAATTATCTTTGATAAAGGTAGAG
 481 GCACAAAGAGGCAAACTAAGCAAGTCAAATTCTAATGTGTGTACTTCATAATAATTTTTTATCCATTTTCATCTTTATAT
 561 TCTGTAACATGAAACTTACCTAATCTTCAAATGTTAGCTTCATTTTTTACCTTTGAAATACTTAATCTTTCTGAATAAAT
 641 ATAATGTGTCTATAAAATAATGAGACTGATTCTGGTGTCTTTAGTCATTAAGCTGGTATCTAGTCCTATAATGAACAAAG
 721 GTGAAGCTGCCTTGAGGAGACAAGTGAAAAATTTTTGCTTCAAAGGAGCTCACAAGCTAAGTAAATAAATGAAATTAAGG
 801 TATGGGGCATGGTGGCCTCAGGCTGTCTGGAGGTGTTTGGAAAGGCTTCTTGAGTGAGGTGGCCTTTGAACTGAACTTAG
 881 TTTTTAAAGTAGCTTTTGGAAGAGAAATGAGGATTTGCTATGCAGACAGGGAAGGGAATTTCACTTAAAAGGAAGGTCAT
 961 TTGGAGATGTGAAGATACACTGCTTTAAGGAAGCAGGGTAGAGCTGGAGGATAAGAGATGCAGACCATGAAGGGCCCCAT
1041 TTTATGCTAAAGGTTTTGTCCTGTAGGACATGGAGAACTTCTGAAGAATTTTCAAGGCGGGTGGGATAAGATTATATTGT
1121 ATTTTAGATTACAGTAGTCCCCCCTTATCTTCAGGATATATGTTCCAAGACCCCCAGTGGATGCTGGAAACCAGGGATAG
1201 AACATAATTCTATATATACTATGCATGAATTTCTTTTTCCTTCTTTACAATCTCACACATAGGTTTGTTCTTACTATAGA
1281 TCTTACCAATCTCAGCATACTTTTATTTCTCTTGAGAACCTTCACCCTTTCACTTAAAGGAGGCGCTTTATAGCTTCTCT
1361 TTGGCATATCCAAATGCCAGCATCACTGTTGTATTTTGGGGTCATTATTAAGTTACTTAATCATCCTTAATCCTTATCTT
1441 AGGGATACTTGAACACAAACACTGTGGTAGGATAACAGTATATCTGATTAACAGACTGCTACTAGGTGATTAATGGGTGG
1521 GTAGTGTAAATACACAAGAAAAGGATGATTCACATCCCATGTGGGATGGAGCAGAACTGCATTATTTCATTACATTACTC
1601 AGAACAGGCATATAATTGAAAACTTATGAATTATTTTTTTTTAATTATTTGAGATGGAATCTTGCTTTGTCAGCCAGGCT
1681 GGAGTGCAGTGACACGATCTCAGCTCACTGCAACCTCTGTCTCCTGGGTTCAGGTGATTCTCCTCCCTAGTCTCCCAAGT
1761 AGCTGGGACTATAGGCACGTGCCACCACACCCGGCTAATTTTCATATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCC
1841 AGGCTGTTCTTGAAATCCTGACCTCAAGTGATCCACACATGTCTACCTCCCAAAGTGCTGGGATTACAGTCGTGAGCCAC
1921 TGTACCCCGCCTAAAACTGATGAATTATTTCTGAAATTTTCTATTTAACATTTTCAGACCACAGTTGACCACAGGTAACG
2001 GAAACCTCAATCACAGAAAGTAAAGCCGTGGATACGGTGGGACTAATGTATTGGTAGCAGCCTAGAGGATTGATGGGAAA
2081 GGTATGAAGCTAGAAGGTGGTCAATATAATACAGACATGAGCTGATGAACATCTAAACTGGGACTATACTAGTAGGAGAG
2161 GAAAGGAAAAAACATTTGGAAAATAGTAACATTGATATTTCTTGTGAAGGAGAAGTAGAAAGTAACAGTGACTTCTAGAT
2241 TTCTGGGTTGGGTCATCTTGTTGGATAGTAGTACCACTGAGATAGGGAATTCAAGGTTTGGGGCAAGGGTAATTGGAGAT
2321 GAGAATTGTGTTTGGAGGTAACTACTGACATTCAAGTGGAGAGGGTTAGTTGGCAGTTAGTTCTATGGTCATCTCTTTTG
2401 CCGAGACTGTATATTTATCAGACTCCTGGGAGAACACCAACATCCATGGGGTTGTAGGGAAGGCTAAGGACAGGAGTGGG
2481 GAGTGGTACCTTGAAAATCCAAAAGCCATCTCAAGTAAAAGGAATAAATGTGTCATGCTTTTTAAAAAGTTGATGTGCGG
2561 AAAATGTTTTCTTGGCTTGGAAACTGGGCGGCCAGGGGATGACAGTATGGACTTCCAGTGAAGTAGTGACGGAAGCCTGA
2641 TCATAGACATTAAGGAAAGCGGTGTAGGTGTTGTGAGCTTTTGCTGTAAGAAAAAGTTGAGACTTTTGTTTTGCTTTGTT
2721 TGTGAGAGATGTGTATGTATTTCTGCTGAGTGATAAAGCCAGCGGGGAGGGACTGATTTTTATAGGAAAGGAGGAAAAAT
2801 AATGGAAACACATCTCATTATTTTATTGTCACATTTCTTTTCTTTGTTATCTTTTGAGTGTTTCCCTTTTTTGCCAGTAG
2881 AGTTATTGTCTATTTTTTCTTTCTATAGGACAAAAAAACTAATACAGACTCCTTTATTTTTATATGGATATACTAGGATT
2961 GTAATTCAGATATTTAATATCTTTTATCAGTGTTCAGATCATAGATTAATGGAGAAAACATTTAAAATTGTTTTAAATTT
3041 AAATACATTGAACTCTAACATAGATGAAAAATGTGTTTACTGCTTTCAGTCGACCTGATAAAAAGCAACGTATGGTAAAT
3121 ATTGAAAACTCCAGGCATCGAAAACAAGAGCAGAAGCACCTTCAGCCACAGCCTTATAAAAGGGAAGGTAAATGGCATAA
3201 ATATGGTCGCACTAATGGAAGACAAATGGCAAATCTTGAAATAGAATTGGGGCAATTACCTTTTGATCCTCAATACTGAT
3281 TCACAATTGAGTTAAATTAGACAACTGTAAGAGAAAAATTTATGCTTTGTATAATGTTTGGTATTGAAACTAATGAAATT
3361 ACCAAGATGACAATGTCTTTTCTTTTGTTTCTAAGTATCAGTTTGATAACTTTATATTATTCCTCAGAAGCATTAGTTAA
3441 AAGTCTACTAACCTGCATTTTCCTGTAGTTTAGCTTCGTTGAATTTTTTTTGACACTGGAAATGTTCAACTGTAGTTTTA
3521 TTAAGGAAGCCAGGCATGCAACAGATTTTGTGCATGAAATGAGACTTCCTTTCAGTGTAAGAGCTTAAAGCAAGCTCAGT
3601 CATACATGACAAAGTGTAATTAACACTGATGTTTGTGTTAAATTTGCAGCAGAGCTTGAGAAAAGTACATTGTTCTGGAA
3681 TTTCATCATTAACATTTTATAATCTTACACTCACTTCTTGTCTTTTTGTGGGTTCAAGAGCCCTCTGACTTGTGAAGAAT
3761 TTGCTGCCCTCTTAAGAGCTTGCTGACTTGTTTTCTTGTGAAATTTTTTGCACATCTGAATATCGTGGAAGAAACAATAA
3841 AACTACACCATGAGGAAAACTAAAGGTCTTTATTTAAAATCTGGCATTGTATTAACATGTAATTTTATACTATGTGGTAT
3921 TTTATACATTTCCTCAGTAGTGATATTTGGTAAAGCAGTTCATACAGCTTTTTTCTAAGTTCCATGAATCTTACCCAGTG
4001 TTTACCGAAGTATTTAAGCAGCATCTGAATATTTCCACCCAGCAATGTTAATTTATCTAGGAAAGTTCAGAATTTCATCT
4081 TCATGTTGAATTTCCCTTTTAACTTCCGTTCATAGACATATATGTGACTTCCAATTCGACCCTCTGGCAAGTGAGTGTGG
4161 AAGAAAACAGCAGTTCTTTTATAATTGCTTGAAATTAGGAAAGCGCTTATTTCCTAGAAGCAAATAAATGTTTAAGTAAA
4241 TAAAGGCTACATTTTGCTGAGTACTGTTTCAGTCAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaccuacGUUUAAAAu 5'
                   |||||||| 
Target 5' tgagcaacaCAAATTTTa 3'
341 - 358 145.00 -5.90
2
miRNA  3' agGACC-UAC---GUUUAAAAu 5'
            | || |||   ||:||||| 
Target 5' gcCAGGCATGCAACAGATTTTg 3'
3529 - 3550 136.00 -10.60
3
miRNA  3' aggaCCUACGUUUAAAau 5'
              ||| | :|||||  
Target 5' acagGGAAGGGAATTTca 3'
926 - 943 118.00 -8.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
785488 4080 ClinVar
976715 4121 ClinVar
COSN30164908 28 COSMIC
COSN31509302 55 COSMIC
COSN13628745 56 COSMIC
COSN30113298 127 COSMIC
COSN30493410 139 COSMIC
COSN30136328 151 COSMIC
COSN22780028 752 COSMIC
COSN8174909 800 COSMIC
COSN25095006 925 COSMIC
COSN24377995 1014 COSMIC
COSN5174125 1287 COSMIC
COSN20112101 2257 COSMIC
COSN1680037 2933 COSMIC
COSN1680035 2938 COSMIC
COSN16469407 3010 COSMIC
COSM5807885 3092 COSMIC
COSM9188539 3111 COSMIC
COSM9016008 3125 COSMIC
COSM9188538 3140 COSMIC
COSM6905399 3148 COSMIC
COSN30695234 3331 COSMIC
COSN29678104 3343 COSMIC
COSN31569333 3361 COSMIC
COSN21208997 3435 COSMIC
COSN26565738 3474 COSMIC
COSN31531755 3478 COSMIC
COSN31606469 3623 COSMIC
COSN31523308 3697 COSMIC
COSN30526341 3929 COSMIC
COSN23014835 3968 COSMIC
COSN26969714 3984 COSMIC
COSN31560743 4000 COSMIC
COSN31573493 4007 COSMIC
COSN30765229 4025 COSMIC
COSN30531187 4033 COSMIC
COSN31525498 4049 COSMIC
COSN30109762 4060 COSMIC
COSN30123898 4061 COSMIC
COSM6746041 4079 COSMIC
COSM9158227 4080 COSMIC
COSM6213132 4095 COSMIC
COSM8088873 4105 COSMIC
COSM3969162 4107 COSMIC
COSM7473056 4115 COSMIC
COSM9783884 4120 COSMIC
COSM6746035 4124 COSMIC
COSM5568526 4128 COSMIC
COSM4801058 4134 COSMIC
COSM4935442 4144 COSMIC
COSM9239730 4147 COSMIC
COSM6422569 4149 COSMIC
COSM7201900 4185 COSMIC
COSM8353572 4188 COSMIC
COSM963036 4206 COSMIC
COSN30113717 4227 COSMIC
COSN31606807 4242 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs765394417 4 dbSNP
rs757275142 10 dbSNP
rs941573506 17 dbSNP
rs754175217 18 dbSNP
rs1196087278 22 dbSNP
rs909886124 26 dbSNP
rs1188467671 34 dbSNP
rs764358260 38 dbSNP
rs1320984731 45 dbSNP
rs1169570029 55 dbSNP
rs954278763 56 dbSNP
rs1029910060 65 dbSNP
rs998132325 69 dbSNP
rs1358820934 81 dbSNP
rs897169247 83 dbSNP
rs1464677573 88 dbSNP
rs930077112 89 dbSNP
rs148837444 103 dbSNP
rs976345688 105 dbSNP
rs1304018438 111 dbSNP
rs1367223021 119 dbSNP
rs1006066289 128 dbSNP
rs553316876 137 dbSNP
rs1277580451 147 dbSNP
rs1411789072 152 dbSNP
rs539576858 159 dbSNP
rs887589993 160 dbSNP
rs747069343 170 dbSNP
rs1256130799 172 dbSNP
rs111616423 177 dbSNP
rs1188528182 184 dbSNP
rs1246753419 186 dbSNP
rs1451819936 190 dbSNP
rs937180362 191 dbSNP
rs1187479374 197 dbSNP
rs905774832 216 dbSNP
rs1424904171 217 dbSNP
rs145472419 218 dbSNP
rs1178478891 225 dbSNP
rs1359859486 226 dbSNP
rs1250576174 227 dbSNP
rs1318565802 236 dbSNP
rs1221912803 238 dbSNP
rs112004783 239 dbSNP
rs912907731 241 dbSNP
rs1024054304 245 dbSNP
rs1301498350 258 dbSNP
rs1014869294 261 dbSNP
rs988551849 265 dbSNP
rs1269408105 266 dbSNP
rs894649398 274 dbSNP
rs1056324904 277 dbSNP
rs1005779031 293 dbSNP
rs888671667 304 dbSNP
rs1487693946 307 dbSNP
rs1193247679 309 dbSNP
rs758934807 317 dbSNP
rs753152869 325 dbSNP
rs1051099 327 dbSNP
rs1414267750 333 dbSNP
rs954244384 344 dbSNP
rs535429789 348 dbSNP
rs749575179 350 dbSNP
rs1322786388 361 dbSNP
rs1347943498 364 dbSNP
rs1350303828 365 dbSNP
rs976972673 367 dbSNP
rs961375494 371 dbSNP
rs1293841515 373 dbSNP
rs922718800 378 dbSNP
rs1041128685 382 dbSNP
rs1016023162 383 dbSNP
rs1329217580 385 dbSNP
rs1348361149 395 dbSNP
rs1303032243 396 dbSNP
rs568419853 397 dbSNP
rs1289833904 399 dbSNP
rs1005580041 400 dbSNP
rs1224252771 408 dbSNP
rs910389673 411 dbSNP
rs1482888439 413 dbSNP
rs1389236997 417 dbSNP
rs986339699 420 dbSNP
rs957303295 431 dbSNP
rs888509247 432 dbSNP
rs977123217 433 dbSNP
rs1411561894 436 dbSNP
rs1406954905 437 dbSNP
rs1164047425 442 dbSNP
rs187502884 442 dbSNP
rs967026173 446 dbSNP
rs1033807964 451 dbSNP
rs1191410633 467 dbSNP
rs1309441320 467 dbSNP
rs1001336189 468 dbSNP
rs1335943995 478 dbSNP
rs750657427 481 dbSNP
rs1024355604 492 dbSNP
rs757686371 509 dbSNP
rs1244638651 521 dbSNP
rs548443573 525 dbSNP
rs528089706 527 dbSNP
rs1464985732 528 dbSNP
rs1341865308 535 dbSNP
rs1203329551 536 dbSNP
rs1034539540 545 dbSNP
rs1438559907 546 dbSNP
rs1005664460 552 dbSNP
rs1186941429 553 dbSNP
rs888723932 554 dbSNP
rs1207450235 557 dbSNP
rs1047301866 569 dbSNP
rs1184106210 590 dbSNP
rs1328900038 592 dbSNP
rs559117707 601 dbSNP
rs994164100 602 dbSNP
rs1170198188 620 dbSNP
rs901183131 621 dbSNP
rs1413484316 627 dbSNP
rs1331702592 628 dbSNP
rs1341724596 635 dbSNP
rs1455096560 642 dbSNP
rs1316308410 644 dbSNP
rs1284250743 645 dbSNP
rs1221307283 646 dbSNP
rs1365694888 650 dbSNP
rs1041405260 652 dbSNP
rs1277140287 657 dbSNP
rs1340404656 661 dbSNP
rs1200079662 665 dbSNP
rs1045654005 669 dbSNP
rs911283504 670 dbSNP
rs949961582 677 dbSNP
rs1204346965 682 dbSNP
rs1247371826 684 dbSNP
rs1431612729 685 dbSNP
rs8031507 686 dbSNP
rs1373424098 689 dbSNP
rs1322481051 694 dbSNP
rs1170419065 700 dbSNP
rs935816344 704 dbSNP
rs1469897076 705 dbSNP
rs1319242971 711 dbSNP
rs1388562037 718 dbSNP
rs1433525056 730 dbSNP
rs765936333 731 dbSNP
rs925893312 739 dbSNP
rs754190095 740 dbSNP
rs1387808990 742 dbSNP
rs977342696 757 dbSNP
rs376496579 767 dbSNP
rs1325873090 773 dbSNP
rs1224221304 776 dbSNP
rs1267514252 779 dbSNP
rs925688018 781 dbSNP
rs760320904 788 dbSNP
rs568105547 789 dbSNP
rs1449561919 797 dbSNP
rs922788494 799 dbSNP
rs976941446 803 dbSNP
rs749960186 805 dbSNP
rs1464890087 806 dbSNP
rs1257076273 809 dbSNP
rs1409113449 819 dbSNP
rs1212732915 825 dbSNP
rs200770264 830 dbSNP
rs368287144 830 dbSNP
rs1278213375 850 dbSNP
rs149657465 862 dbSNP
rs1321929145 863 dbSNP
rs1347630190 870 dbSNP
rs1344412021 878 dbSNP
rs767100385 879 dbSNP
rs952776793 880 dbSNP
rs1327133061 889 dbSNP
rs1025734450 908 dbSNP
rs1033725829 911 dbSNP
rs1002307756 913 dbSNP
rs901398192 921 dbSNP
rs1019640985 923 dbSNP
rs969850742 927 dbSNP
rs1180981147 938 dbSNP
rs1024133962 945 dbSNP
rs1249036831 946 dbSNP
rs1473305294 950 dbSNP
rs1053863235 955 dbSNP
rs936704408 966 dbSNP
rs1161901034 978 dbSNP
rs904358615 978 dbSNP
rs1449986406 983 dbSNP
rs1014123167 996 dbSNP
rs891705903 1003 dbSNP
rs1307615639 1007 dbSNP
rs1053078420 1010 dbSNP
rs1357159918 1013 dbSNP
rs1041547241 1024 dbSNP
rs1393237215 1026 dbSNP
rs1000233727 1027 dbSNP
rs1339807148 1028 dbSNP
rs140636866 1030 dbSNP
rs917143936 1053 dbSNP
rs1359849811 1060 dbSNP
rs770102552 1061 dbSNP
rs1049442619 1070 dbSNP
rs1272070615 1077 dbSNP
rs1177283573 1083 dbSNP
rs1481379601 1083 dbSNP
rs1254867947 1091 dbSNP
rs146871668 1098 dbSNP
rs922384547 1099 dbSNP
rs1168296072 1101 dbSNP
rs927081505 1102 dbSNP
rs1368962177 1104 dbSNP
rs1448317958 1110 dbSNP
rs1041178466 1119 dbSNP
rs561183471 1120 dbSNP
rs1378513151 1125 dbSNP
rs1317116247 1127 dbSNP
rs983844935 1133 dbSNP
rs1295050055 1136 dbSNP
rs1308963022 1137 dbSNP
rs940240911 1138 dbSNP
rs181919016 1139 dbSNP
rs1204969724 1147 dbSNP
rs1245532937 1151 dbSNP
rs984392446 1152 dbSNP
rs1025786873 1155 dbSNP
rs972846683 1158 dbSNP
rs1430577600 1162 dbSNP
rs952800015 1163 dbSNP
rs926623166 1168 dbSNP
rs372128241 1172 dbSNP
rs143843522 1173 dbSNP
rs1227812931 1174 dbSNP
rs1025106064 1176 dbSNP
rs546651550 1180 dbSNP
rs75171994 1182 dbSNP
rs1031964089 1186 dbSNP
rs1376883766 1190 dbSNP
rs1312114562 1192 dbSNP
rs1000966932 1197 dbSNP
rs1410186397 1209 dbSNP
rs1372068776 1210 dbSNP
rs902569397 1212 dbSNP
rs563037841 1222 dbSNP
rs146108077 1223 dbSNP
rs895773870 1224 dbSNP
rs1224830538 1240 dbSNP
rs1263144423 1246 dbSNP
rs1049369763 1255 dbSNP
rs1368480850 1258 dbSNP
rs1462207872 1262 dbSNP
rs996492062 1262 dbSNP
rs1240767361 1263 dbSNP
rs1422651401 1267 dbSNP
rs557380558 1276 dbSNP
rs762640806 1278 dbSNP
rs1424740983 1280 dbSNP
rs937241128 1291 dbSNP
rs868014297 1294 dbSNP
rs1430060587 1303 dbSNP
rs775294404 1309 dbSNP
rs1156815275 1311 dbSNP
rs908729603 1323 dbSNP
rs76574218 1326 dbSNP
rs983728892 1344 dbSNP
rs931077690 1345 dbSNP
rs1406386796 1346 dbSNP
rs1249924262 1347 dbSNP
rs1327842320 1354 dbSNP
rs918317390 1361 dbSNP
rs528165385 1362 dbSNP
rs189487244 1371 dbSNP
rs926888179 1377 dbSNP
rs965919889 1397 dbSNP
rs1319194500 1401 dbSNP
rs912696488 1403 dbSNP
rs1488853460 1405 dbSNP
rs1246487716 1409 dbSNP
rs986116821 1419 dbSNP
rs1489938336 1420 dbSNP
rs72742295 1420 dbSNP
rs1269748458 1421 dbSNP
rs949400467 1423 dbSNP
rs1156836951 1426 dbSNP
rs1410082945 1427 dbSNP
rs1000853031 1436 dbSNP
rs1163892251 1442 dbSNP
rs1219451350 1442 dbSNP
rs917974519 1444 dbSNP
rs1319908537 1450 dbSNP
rs761057604 1452 dbSNP
rs1303347395 1454 dbSNP
rs988244287 1461 dbSNP
rs966810513 1462 dbSNP
rs1407471434 1464 dbSNP
rs72245110 1467 dbSNP
rs1376252458 1471 dbSNP
rs1228812287 1477 dbSNP
rs956042709 1478 dbSNP
rs1352048247 1479 dbSNP
rs1286085873 1483 dbSNP
rs1390392391 1484 dbSNP
rs185464686 1487 dbSNP
rs1390995046 1489 dbSNP
rs1294832971 1494 dbSNP
rs1482817313 1502 dbSNP
rs1179752866 1506 dbSNP
rs895648958 1510 dbSNP
rs1470504342 1519 dbSNP
rs1181186655 1530 dbSNP
rs1056927647 1539 dbSNP
rs777852388 1543 dbSNP
rs1446248506 1544 dbSNP
rs1163918672 1558 dbSNP
rs1001877159 1560 dbSNP
rs1160497871 1562 dbSNP
rs1031514361 1567 dbSNP
rs1330378946 1569 dbSNP
rs979029031 1572 dbSNP
rs1443616915 1576 dbSNP
rs566357047 1581 dbSNP
rs577890924 1586 dbSNP
rs1381156877 1592 dbSNP
rs142882628 1592 dbSNP
rs918369834 1593 dbSNP
rs148525845 1594 dbSNP
rs1037195420 1612 dbSNP
rs549871948 1613 dbSNP
rs900854044 1615 dbSNP
rs1019759077 1620 dbSNP
rs1438435925 1623 dbSNP
rs1209458167 1626 dbSNP
rs529799349 1627 dbSNP
rs1184047249 1628 dbSNP
rs1434045297 1629 dbSNP
rs558007827 1633 dbSNP
rs147427148 1634 dbSNP
rs1169258515 1636 dbSNP
rs73421623 1636 dbSNP
rs1488176298 1642 dbSNP
rs954304190 1643 dbSNP
rs985614891 1643 dbSNP
rs1455045044 1657 dbSNP
rs1048537804 1669 dbSNP
rs979470213 1673 dbSNP
rs1225571149 1684 dbSNP
rs1330955787 1687 dbSNP
rs541225050 1689 dbSNP
rs1272177418 1692 dbSNP
rs1340253071 1694 dbSNP
rs1444984634 1695 dbSNP
rs1266085240 1696 dbSNP
rs1261334529 1698 dbSNP
rs966694197 1704 dbSNP
rs1204200194 1707 dbSNP
rs931511333 1713 dbSNP
rs754168511 1715 dbSNP
rs780402654 1719 dbSNP
rs1331375985 1723 dbSNP
rs755755786 1724 dbSNP
rs527625391 1728 dbSNP
rs1242349130 1742 dbSNP
rs565149866 1746 dbSNP
rs1173717225 1747 dbSNP
rs1369543790 1747 dbSNP
rs917940083 1752 dbSNP
rs1321818923 1756 dbSNP
rs1459349908 1768 dbSNP
rs988600682 1770 dbSNP
rs960800333 1772 dbSNP
rs935414099 1778 dbSNP
rs925380669 1779 dbSNP
rs978615450 1792 dbSNP
rs968556893 1793 dbSNP
rs1028161429 1794 dbSNP
rs1327316181 1795 dbSNP
rs1158405315 1797 dbSNP
rs545882565 1804 dbSNP
rs1281510714 1813 dbSNP
rs1466847888 1816 dbSNP
rs975303156 1823 dbSNP
rs1224160725 1831 dbSNP
rs1035946556 1836 dbSNP
rs1001363605 1844 dbSNP
rs1345560291 1845 dbSNP
rs905826791 1849 dbSNP
rs1450738798 1852 dbSNP
rs188818297 1860 dbSNP
rs1196806695 1863 dbSNP
rs756818856 1864 dbSNP
rs1019265889 1867 dbSNP
rs1480495622 1872 dbSNP
rs1048292214 1878 dbSNP
rs1363734444 1879 dbSNP
rs1004310087 1880 dbSNP
rs1432688279 1881 dbSNP
rs113436872 1885 dbSNP
rs896827948 1886 dbSNP
rs1424310509 1897 dbSNP
rs1248649694 1907 dbSNP
rs1190588838 1909 dbSNP
rs886861772 1910 dbSNP
rs1466244171 1911 dbSNP
rs184041137 1912 dbSNP
rs543542530 1914 dbSNP
rs995642071 1920 dbSNP
rs890864222 1926 dbSNP
rs749186905 1929 dbSNP
rs905365525 1933 dbSNP
rs866024577 1941 dbSNP
rs1293520670 1942 dbSNP
rs1050369685 1945 dbSNP
rs1045316185 1962 dbSNP
rs1013856990 1963 dbSNP
rs896757788 1965 dbSNP
rs1052425946 1977 dbSNP
rs574568725 1980 dbSNP
rs935369000 1986 dbSNP
rs1184565532 1989 dbSNP
rs979689736 1995 dbSNP
rs751600466 1997 dbSNP
rs925382819 1999 dbSNP
rs1162000658 2001 dbSNP
rs534958371 2002 dbSNP
rs554786860 2002 dbSNP
rs749658464 2002 dbSNP
rs992144887 2010 dbSNP
rs961105267 2016 dbSNP
rs1363700745 2025 dbSNP
rs144698593 2027 dbSNP
rs566252696 2028 dbSNP
rs1044206904 2035 dbSNP
rs16976282 2036 dbSNP
rs149345184 2039 dbSNP
rs1316884703 2047 dbSNP
rs921109875 2048 dbSNP
rs1203350056 2050 dbSNP
rs969872748 2051 dbSNP
rs975245497 2053 dbSNP
rs965248876 2054 dbSNP
rs1404729209 2059 dbSNP
rs12591532 2062 dbSNP
rs1026734192 2065 dbSNP
rs763949952 2070 dbSNP
rs1239337521 2078 dbSNP
rs1461209537 2082 dbSNP
rs193178940 2084 dbSNP
rs1387454468 2086 dbSNP
rs951129259 2090 dbSNP
rs1026698750 2096 dbSNP
rs1434408173 2105 dbSNP
rs775177935 2108 dbSNP
rs897039383 2109 dbSNP
rs1015703509 2117 dbSNP
rs549781880 2122 dbSNP
rs1322150699 2125 dbSNP
rs1463610087 2130 dbSNP
rs969514491 2134 dbSNP
rs1023793980 2138 dbSNP
rs1405268051 2140 dbSNP
rs890911928 2142 dbSNP
rs1049487370 2143 dbSNP
rs765030613 2147 dbSNP
rs1383220109 2149 dbSNP
rs1447698599 2152 dbSNP
rs1293029339 2161 dbSNP
rs1388278565 2166 dbSNP
rs932357295 2169 dbSNP
rs1261957174 2171 dbSNP
rs904027070 2173 dbSNP
rs1202304347 2175 dbSNP
rs1245397003 2177 dbSNP
rs1192316584 2179 dbSNP
rs529863319 2182 dbSNP
rs371425511 2185 dbSNP
rs567359413 2186 dbSNP
rs189806526 2191 dbSNP
rs896730799 2192 dbSNP
rs914145951 2193 dbSNP
rs1171548032 2194 dbSNP
rs1053149064 2195 dbSNP
rs568725103 2204 dbSNP
rs992592226 2208 dbSNP
rs1257926644 2214 dbSNP
rs939358955 2218 dbSNP
rs903854161 2220 dbSNP
rs554382828 2223 dbSNP
rs1429790055 2229 dbSNP
rs1043767139 2237 dbSNP
rs556083800 2246 dbSNP
rs932055772 2248 dbSNP
rs1282140021 2255 dbSNP
rs1339389318 2257 dbSNP
rs59549541 2258 dbSNP
rs1026786469 2259 dbSNP
rs35785357 2259 dbSNP
rs922043876 2261 dbSNP
rs527437224 2265 dbSNP
rs961612849 2269 dbSNP
rs565057505 2273 dbSNP
rs1487000567 2274 dbSNP
rs1008345281 2292 dbSNP
rs1015506789 2292 dbSNP
rs1039510130 2295 dbSNP
rs1425795293 2296 dbSNP
rs545256270 2307 dbSNP
rs943904062 2313 dbSNP
rs890807086 2316 dbSNP
rs1346726121 2323 dbSNP
rs375656777 2326 dbSNP
rs912448548 2340 dbSNP
rs1454032605 2341 dbSNP
rs1027954847 2346 dbSNP
rs1302185828 2348 dbSNP
rs1343204318 2349 dbSNP
rs983110728 2353 dbSNP
rs1283296379 2355 dbSNP
rs77400550 2363 dbSNP
rs919596623 2365 dbSNP
rs1223694411 2370 dbSNP
rs973761042 2372 dbSNP
rs969106775 2373 dbSNP
rs1217739970 2385 dbSNP
rs1023427502 2386 dbSNP
rs1489901080 2387 dbSNP
rs1224903029 2396 dbSNP
rs1013752482 2399 dbSNP
rs185725252 2402 dbSNP
rs543407342 2403 dbSNP
rs1440105246 2407 dbSNP
rs146502427 2411 dbSNP
rs1000204296 2415 dbSNP
rs138675116 2423 dbSNP
rs1363336979 2425 dbSNP
rs147215928 2439 dbSNP
rs541229491 2440 dbSNP
rs1370101079 2441 dbSNP
rs1439343064 2450 dbSNP
rs1185583845 2451 dbSNP
rs1376091166 2468 dbSNP
rs1474737024 2472 dbSNP
rs515341 2473 dbSNP
rs1206788562 2475 dbSNP
rs996174265 2480 dbSNP
rs1271760489 2482 dbSNP
rs1248413557 2486 dbSNP
rs1045015460 2487 dbSNP
rs1437351648 2488 dbSNP
rs1234546628 2489 dbSNP
rs559001686 2489 dbSNP
rs1359135532 2490 dbSNP
rs1458107685 2494 dbSNP
rs900587536 2512 dbSNP
rs1383141100 2515 dbSNP
rs1446124716 2519 dbSNP
rs1040445512 2521 dbSNP
rs1418288839 2527 dbSNP
rs943847875 2530 dbSNP
rs890974333 2547 dbSNP
rs1233088592 2556 dbSNP
rs375757830 2558 dbSNP
rs532919828 2559 dbSNP
rs920659044 2561 dbSNP
rs919862658 2564 dbSNP
rs1408156660 2568 dbSNP
rs773121563 2571 dbSNP
rs762995970 2577 dbSNP
rs1324342663 2578 dbSNP
rs947734336 2588 dbSNP
rs143688236 2589 dbSNP
rs1338920596 2590 dbSNP
rs138113869 2591 dbSNP
rs1275203295 2592 dbSNP
rs960881431 2597 dbSNP
rs986740553 2599 dbSNP
rs1202933689 2608 dbSNP
rs1412350641 2617 dbSNP
rs756482036 2617 dbSNP
rs59563514 2619 dbSNP
rs1187923528 2623 dbSNP
rs1028005744 2630 dbSNP
rs996501332 2631 dbSNP
rs967815450 2632 dbSNP
rs567375518 2638 dbSNP
rs1466636002 2644 dbSNP
rs193143284 2645 dbSNP
rs533765003 2660 dbSNP
rs968702400 2661 dbSNP
rs1198999924 2668 dbSNP
rs892636862 2671 dbSNP
rs146975558 2674 dbSNP
rs1213550276 2675 dbSNP
rs1326140874 2675 dbSNP
rs996100703 2685 dbSNP
rs1341243182 2689 dbSNP
rs1270488057 2691 dbSNP
rs1222928080 2693 dbSNP
rs900515033 2698 dbSNP
rs1226924033 2707 dbSNP
rs1200888568 2724 dbSNP
rs1283274947 2727 dbSNP
rs1372927159 2729 dbSNP
rs3743203 2735 dbSNP
rs930641524 2738 dbSNP
rs748068748 2740 dbSNP
rs920711454 2743 dbSNP
rs1036414405 2744 dbSNP
rs1196581281 2761 dbSNP
rs940733222 2763 dbSNP
rs908392270 2764 dbSNP
rs1009411890 2767 dbSNP
rs987012559 2769 dbSNP
rs886552139 2770 dbSNP
rs1047315931 2783 dbSNP
rs929863736 2785 dbSNP
rs955346128 2793 dbSNP
rs1404415034 2803 dbSNP
rs1281448170 2806 dbSNP
rs898406436 2809 dbSNP
rs1332816796 2811 dbSNP
rs1233850301 2813 dbSNP
rs1428748241 2813 dbSNP
rs1389270808 2814 dbSNP
rs1161161925 2839 dbSNP
rs1398708100 2842 dbSNP
rs1218461954 2844 dbSNP
rs1406830325 2844 dbSNP
rs1286308512 2845 dbSNP
rs1219705692 2846 dbSNP
rs1270399408 2846 dbSNP
rs1490066266 2846 dbSNP
rs1172751256 2849 dbSNP
rs1435475407 2849 dbSNP
rs1200159820 2854 dbSNP
rs1478730736 2857 dbSNP
rs1038300713 2858 dbSNP
rs1468936047 2862 dbSNP
rs1160755266 2866 dbSNP
rs1381223587 2877 dbSNP
rs1424242235 2884 dbSNP
rs1250522044 2886 dbSNP
rs947661661 2886 dbSNP
rs117741815 2889 dbSNP
rs1392926585 2899 dbSNP
rs751115465 2903 dbSNP
rs939080433 2908 dbSNP
rs923753829 2912 dbSNP
rs975116445 2919 dbSNP
rs967699282 2921 dbSNP
rs1021928384 2928 dbSNP
rs1009336652 2930 dbSNP
rs956630854 2944 dbSNP
rs978659216 2951 dbSNP
rs968195581 2957 dbSNP
rs1279623021 2969 dbSNP
rs1221090736 2970 dbSNP
rs1194678627 2977 dbSNP
rs1343132790 2981 dbSNP
rs1250439398 2986 dbSNP
rs1436572335 2986 dbSNP
rs1180961113 2988 dbSNP
rs562429689 2989 dbSNP
rs1022466022 3001 dbSNP
rs1302846384 3004 dbSNP
rs974986033 3005 dbSNP
rs964656055 3014 dbSNP
rs1370364106 3015 dbSNP
rs549772203 3021 dbSNP
rs1018890301 3030 dbSNP
rs1437099433 3045 dbSNP
rs759413260 3046 dbSNP
rs1331849373 3061 dbSNP
rs950857493 3092 dbSNP
rs1026432094 3094 dbSNP
rs1379474963 3101 dbSNP
rs1450137271 3105 dbSNP
rs1314449246 3108 dbSNP
rs1168349210 3109 dbSNP
rs1428450926 3110 dbSNP
rs774250427 3114 dbSNP
rs1191050564 3120 dbSNP
rs116037872 3122 dbSNP
rs370485625 3129 dbSNP
rs1242893970 3137 dbSNP
rs762998490 3144 dbSNP
rs1316646362 3151 dbSNP
rs772993179 3156 dbSNP
rs1257258288 3159 dbSNP
rs1224528957 3160 dbSNP
rs1284052046 3169 dbSNP
rs561068055 3177 dbSNP
rs769413175 3182 dbSNP
rs1230497883 3194 dbSNP
rs1380361078 3196 dbSNP
rs1335790307 3197 dbSNP
rs1038269066 3206 dbSNP
rs1180425947 3208 dbSNP
rs1012184492 3209 dbSNP
rs1258542470 3211 dbSNP
rs940801455 3212 dbSNP
rs1296523287 3226 dbSNP
rs1461604182 3228 dbSNP
rs1337671546 3232 dbSNP
rs1192642459 3242 dbSNP
rs1390850858 3247 dbSNP
rs895091777 3251 dbSNP
rs1443287279 3252 dbSNP
rs1385031132 3253 dbSNP
rs1188611147 3257 dbSNP
rs1424034832 3259 dbSNP
rs1171337728 3269 dbSNP
rs890524278 3272 dbSNP
rs1056531661 3273 dbSNP
rs140212799 3282 dbSNP
rs1379514762 3283 dbSNP
rs1274696328 3285 dbSNP
rs1381281347 3286 dbSNP
rs1207251572 3308 dbSNP
rs776269711 3310 dbSNP
rs1314121448 3311 dbSNP
rs1245156679 3312 dbSNP
rs1342038312 3313 dbSNP
rs921216695 3318 dbSNP
rs572427487 3319 dbSNP
rs766587738 3320 dbSNP
rs187750421 3325 dbSNP
rs1426246357 3328 dbSNP
rs1259278571 3340 dbSNP
rs1485749188 3340 dbSNP
rs545262229 3342 dbSNP
rs528257234 3359 dbSNP
rs1323372909 3360 dbSNP
rs563075104 3362 dbSNP
rs1484842811 3367 dbSNP
rs915425111 3373 dbSNP
rs974912652 3377 dbSNP
rs752657493 3380 dbSNP
rs1194393816 3383 dbSNP
rs1428593677 3387 dbSNP
rs1431353516 3406 dbSNP
rs912183981 3410 dbSNP
rs559956954 3414 dbSNP
rs1452731159 3415 dbSNP
rs543551188 3422 dbSNP
rs776478330 3422 dbSNP
rs576684710 3428 dbSNP
rs764980748 3447 dbSNP
rs994940644 3449 dbSNP
rs1345505527 3456 dbSNP
rs962508677 3459 dbSNP
rs982335284 3463 dbSNP
rs1016763528 3471 dbSNP
rs1303917167 3473 dbSNP
rs1023721018 3477 dbSNP
rs1012127201 3478 dbSNP
rs182285951 3479 dbSNP
rs1212663312 3481 dbSNP
rs1268237869 3492 dbSNP
rs1487487219 3495 dbSNP
rs536278501 3499 dbSNP
rs1284623236 3502 dbSNP
rs1418295536 3504 dbSNP
rs1449923707 3512 dbSNP
rs1156536882 3520 dbSNP
rs1056392688 3538 dbSNP
rs148216068 3541 dbSNP
rs1003582518 3545 dbSNP
rs902196155 3566 dbSNP
rs1042504499 3569 dbSNP
rs796090679 3570 dbSNP
rs1437940221 3574 dbSNP
rs75249417 3591 dbSNP
rs1368850541 3594 dbSNP
rs759323081 3603 dbSNP
rs533913350 3618 dbSNP
rs1307513330 3626 dbSNP
rs1356181798 3628 dbSNP
rs1039172605 3630 dbSNP
rs1167699046 3631 dbSNP
rs1005274711 3637 dbSNP
rs943572079 3647 dbSNP
rs1223784636 3658 dbSNP
rs1247217788 3664 dbSNP
rs1428503344 3676 dbSNP
rs912095205 3677 dbSNP
rs1176609709 3678 dbSNP
rs1239754919 3683 dbSNP
rs1439967940 3684 dbSNP
rs1162571684 3686 dbSNP
rs890584514 3688 dbSNP
rs773481411 3693 dbSNP
rs987742024 3704 dbSNP
rs1415133471 3708 dbSNP
rs950752744 3709 dbSNP
rs932020407 3710 dbSNP
rs1446666448 3711 dbSNP
rs543239174 3714 dbSNP
rs1379613110 3715 dbSNP
rs1184004004 3716 dbSNP
rs1474406729 3721 dbSNP
rs919277378 3729 dbSNP
rs767741917 3736 dbSNP
rs73421619 3737 dbSNP
rs963438379 3740 dbSNP
rs143042103 3743 dbSNP
rs990619673 3745 dbSNP
rs1306899939 3747 dbSNP
rs959238558 3763 dbSNP
rs1203892269 3776 dbSNP
rs1259871700 3776 dbSNP
rs915124775 3778 dbSNP
rs537601346 3782 dbSNP
rs1473566874 3784 dbSNP
rs768734878 3796 dbSNP
rs934981647 3798 dbSNP
rs927616067 3800 dbSNP
rs1169187322 3820 dbSNP
rs1403007480 3825 dbSNP
rs568813181 3828 dbSNP
rs1313298433 3838 dbSNP
rs1333914464 3840 dbSNP
rs1338987903 3843 dbSNP
rs1450442340 3850 dbSNP
rs1284899951 3851 dbSNP
rs1003477326 3860 dbSNP
rs1361401960 3861 dbSNP
rs982270650 3868 dbSNP
rs1280032593 3871 dbSNP
rs1318428720 3879 dbSNP
rs1202874839 3897 dbSNP
rs1276215247 3900 dbSNP
rs749813222 3910 dbSNP
rs11732 3911 dbSNP
rs1020602005 3913 dbSNP
rs1010564754 3916 dbSNP
rs1023773442 3924 dbSNP
rs770336696 3935 dbSNP
rs973531223 3938 dbSNP
rs1478425784 3940 dbSNP
rs1172413483 3942 dbSNP
rs1410125396 3949 dbSNP
rs1375052949 3951 dbSNP
rs1400480781 3954 dbSNP
rs1295997741 3956 dbSNP
rs1335133884 3966 dbSNP
rs747586835 3967 dbSNP
rs746244095 3974 dbSNP
rs1360071424 3975 dbSNP
rs1398235263 3981 dbSNP
rs1280169305 3984 dbSNP
rs1341106676 3989 dbSNP
rs1038765695 3992 dbSNP
rs191218911 4007 dbSNP
rs1371285798 4019 dbSNP
rs1309880006 4022 dbSNP
rs747395128 4024 dbSNP
rs370075431 4036 dbSNP
rs1164338234 4038 dbSNP
rs1459824676 4041 dbSNP
rs1219528152 4042 dbSNP
rs772274694 4042 dbSNP
rs1283120298 4047 dbSNP
rs1179273438 4050 dbSNP
rs1472038934 4052 dbSNP
rs758656192 4056 dbSNP
rs1218231733 4061 dbSNP
rs746450890 4062 dbSNP
rs560980266 4064 dbSNP
rs1289137251 4069 dbSNP
rs757376460 4074 dbSNP
rs753906457 4076 dbSNP
rs2444042 4080 dbSNP
rs1238641087 4082 dbSNP
rs756358630 4085 dbSNP
rs1488928061 4088 dbSNP
rs1198820366 4090 dbSNP
rs1376383708 4094 dbSNP
rs1290299315 4096 dbSNP
rs746015165 4101 dbSNP
rs374303086 4102 dbSNP
rs565194380 4106 dbSNP
rs1379994163 4107 dbSNP
rs765017632 4108 dbSNP
rs774234795 4108 dbSNP
rs761342771 4109 dbSNP
rs775040015 4112 dbSNP
rs776068686 4113 dbSNP
rs919526409 4114 dbSNP
rs369616294 4117 dbSNP
rs377008200 4119 dbSNP
rs1321521727 4122 dbSNP
rs371775367 4123 dbSNP
rs769773951 4124 dbSNP
rs746164541 4127 dbSNP
rs1245601311 4136 dbSNP
rs779483306 4137 dbSNP
rs367927367 4138 dbSNP
rs1259418062 4144 dbSNP
rs1202042495 4148 dbSNP
rs1207809912 4156 dbSNP
rs778049348 4158 dbSNP
rs1490598659 4172 dbSNP
rs1453830406 4173 dbSNP
rs1270316372 4176 dbSNP
rs375047051 4187 dbSNP
rs879775251 4199 dbSNP
rs753034934 4202 dbSNP
rs781259075 4204 dbSNP
rs8043415 4205 dbSNP
rs1325136655 4209 dbSNP
rs750144952 4210 dbSNP
rs1208649316 4211 dbSNP
rs1436361065 4216 dbSNP
rs991591036 4218 dbSNP
rs369915830 4220 dbSNP
rs2444041 4234 dbSNP
rs753741353 4235 dbSNP
rs760160969 4236 dbSNP
rs1046019122 4237 dbSNP
rs1478971499 4240 dbSNP
rs1387254646 4246 dbSNP
rs553633768 4247 dbSNP
rs1371333549 4249 dbSNP
rs775218163 4251 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aggaccuacGUUUAAAAu 5'
                   |||||||| 
Target 5' ----caacaCAAAUUUUa 3'
1 - 14
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000310958.6 | 3UTR | CAACACAAAUUUUACUCUGAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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