pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CYP4A11   
Synonyms CP4Y, CYP4A2, CYP4AII
Description cytochrome P450 family 4 subfamily A member 11
Transcript NM_000778   
Expression
Putative miRNA Targets on CYP4A11
3'UTR of CYP4A11
(miRNA target sites are highlighted)
>CYP4A11|NM_000778|3'UTR
   1 GGGCCTCCACCTGCCGTCCTGTCTTCCTGACCCCCGCTTCTGTCCCCTTCCTGTCTGCCCATATCCTGTTTTCTGTCTGC
  81 CCACCTTCCCTTCTTCCCACCTGCCTGCTGTCCCCCAGTCTGCCTGCCCTTCTCTCTCTCACCTTTCTCCAGGCTCCCTA
 161 CCTGCTTGTCTACCTGTCTCCTACCCACCTGTATCTCTTGTTGGGAGAAAAGCTGAGTGTTGGGAGAAGCTGAGGCCGAG
 241 CTTGCATGTCTGACATAATGTAAAAGAGTCTTGGATCATGTCCAGGATCCAGGGTCTAAAACCCCTTGTGGCCTTTGGAA
 321 CACCAAGCTCTGTGCTGAAGGGTGGAAGGCTACCCTGACGCACCATAATCTAAGCCCGGGGCATAAAACCCCTCGTGGCT
 401 TGGATAGAATCCAGGGCTCGTGGCTCTGGAATGTGTCTGAACTTGCTGCCTCCTCGCTCCTTGCTCTCCCAGGATCAATT
 481 GTATCTTGAGTTAAAAGAACCTGCTCTCCATTATCTCAAGTAGCAGAGCAGATGCTAAACCGTCACAGCTGTAAATCATG
 561 TGCTTAATGCAACATGCCCTTTCGACCCCCACATTCTCACCACCTGTTTCTTTGTTTGATCACCAATAAATAATCTGCAC
 641 TTCCAGAGCTCGGGGCCTTCACAGCCTCCATCCTTAGCTTTGGCGCCCTGGACCCACTTTCTCTCTCAAACTGTCTTTTC
 721 TCACTGCTTTGACTCTGCCGGACTTTGTCACCCCCACGACCTGGTGTTGGGTCTGAACACCCCAACATCCCTGAATCTCC
 801 ACCCACCTCCCAAACTCCTGCCTGCCCTCCAGACTGTCTGCCCATACACCTGTCTCCTTCTTCCTGCCTGCTTGTCTGTT
 881 CCTATATTAGTTTCCTATTACTGCTGTAATAAACTATCACAATCTCAGTGATTTTAAATAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauucUGGUUCGGAGGAAGGGa 5'
               ::| : || ||||||| 
Target 5' tttctGTCTGCCCACCTTCCCt 3'
70 - 91 149.00 -17.20
2
miRNA  3' gauucuGGUU---CGGA--GGAAGGGa 5'
                |||:   ||||  |||||:| 
Target 5' tgtcccCCAGTCTGCCTGCCCTTCTCt 3'
109 - 135 138.00 -17.70
3
miRNA  3' gauucugguuCGGAGGAAGGGa 5'
                    |:| ||||||: 
Target 5' ccccgcttctGTCCCCTTCCTg 3'
32 - 53 132.00 -13.76
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN32067164 2 COSMIC
COSN20073532 16 COSMIC
COSN30171755 23 COSMIC
COSN31507564 24 COSMIC
COSN30465662 26 COSMIC
COSN30544799 36 COSMIC
COSN30449203 40 COSMIC
COSN30191239 54 COSMIC
COSN31556975 59 COSMIC
COSN30454914 65 COSMIC
COSN30169524 66 COSMIC
COSN31967776 66 COSMIC
COSN31967775 73 COSMIC
COSN8471434 84 COSMIC
COSN16130846 96 COSMIC
COSN30159131 112 COSMIC
COSN31576098 113 COSMIC
COSN30140406 123 COSMIC
COSN31505346 129 COSMIC
COSN30729739 131 COSMIC
COSN31526341 139 COSMIC
COSN30513372 140 COSMIC
COSN31599866 156 COSMIC
COSN5741647 157 COSMIC
COSN31967773 180 COSMIC
COSN31967772 181 COSMIC
COSN19565447 263 COSMIC
COSN6458245 274 COSMIC
COSN393385 449 COSMIC
COSN31967770 651 COSMIC
COSN31967769 672 COSMIC
COSN22852560 714 COSMIC
COSN31967768 740 COSMIC
COSN31967767 758 COSMIC
COSN8471433 791 COSMIC
COSN31967766 811 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs371275764 2 dbSNP
rs1234581902 3 dbSNP
rs1375228662 4 dbSNP
rs758411083 9 dbSNP
rs752621683 11 dbSNP
rs1462819196 12 dbSNP
rs1440901005 15 dbSNP
rs371480688 16 dbSNP
rs753544364 21 dbSNP
rs1413107770 22 dbSNP
rs1375233920 27 dbSNP
rs766104878 29 dbSNP
rs760231988 31 dbSNP
rs1378499907 33 dbSNP
rs1176664864 34 dbSNP
rs750003772 35 dbSNP
rs1182258201 36 dbSNP
rs772737025 36 dbSNP
rs946896473 38 dbSNP
rs900693133 39 dbSNP
rs763466642 42 dbSNP
rs775929602 44 dbSNP
rs944953368 45 dbSNP
rs770090187 46 dbSNP
rs912209394 49 dbSNP
rs1379979489 60 dbSNP
rs9333037 61 dbSNP
rs1432123561 63 dbSNP
rs370669636 64 dbSNP
rs1326282899 65 dbSNP
rs114160471 69 dbSNP
rs1264523613 77 dbSNP
rs1407425416 82 dbSNP
rs1198736498 84 dbSNP
rs1376350127 90 dbSNP
rs1366486225 91 dbSNP
rs1177432969 95 dbSNP
rs918337365 96 dbSNP
rs974271490 104 dbSNP
rs1443710547 106 dbSNP
rs962554653 110 dbSNP
rs1385731919 113 dbSNP
rs1386181988 116 dbSNP
rs1187126775 121 dbSNP
rs1347232426 127 dbSNP
rs1475703446 136 dbSNP
rs1326598922 141 dbSNP
rs916427561 141 dbSNP
rs1190819353 147 dbSNP
rs1242835435 148 dbSNP
rs535455348 150 dbSNP
rs990666488 152 dbSNP
rs1269281695 154 dbSNP
rs1221307212 160 dbSNP
rs1267309979 162 dbSNP
rs1200548898 168 dbSNP
rs59465754 170 dbSNP
rs1161512446 184 dbSNP
rs1457460481 189 dbSNP
rs1034944219 190 dbSNP
rs1214637150 195 dbSNP
rs1405369797 206 dbSNP
rs999490478 207 dbSNP
rs1339378023 212 dbSNP
rs1225180726 214 dbSNP
rs1307241739 218 dbSNP
rs1268917409 219 dbSNP
rs1439103651 223 dbSNP
rs1320602468 225 dbSNP
rs967146597 227 dbSNP
rs1022360743 230 dbSNP
rs555875183 234 dbSNP
rs537240596 237 dbSNP
rs569866933 238 dbSNP
rs1251593899 246 dbSNP
rs1479861460 247 dbSNP
rs1179232133 251 dbSNP
rs1251442616 259 dbSNP
rs878910482 263 dbSNP
rs1372570220 273 dbSNP
rs4660363 274 dbSNP
rs1425278621 275 dbSNP
rs551945063 275 dbSNP
rs1368537481 278 dbSNP
rs1444031385 280 dbSNP
rs1011437350 282 dbSNP
rs1377934805 286 dbSNP
rs1418764733 305 dbSNP
rs1166117042 306 dbSNP
rs1238154666 309 dbSNP
rs1481348390 317 dbSNP
rs1247431589 319 dbSNP
rs1274538119 330 dbSNP
rs1429750415 339 dbSNP
rs1198333226 342 dbSNP
rs1206983753 348 dbSNP
rs1483023010 356 dbSNP
rs1489756148 359 dbSNP
rs1445313714 360 dbSNP
rs1187864185 363 dbSNP
rs900642038 365 dbSNP
rs1234239671 368 dbSNP
rs1170821218 374 dbSNP
rs539782151 375 dbSNP
rs566344740 377 dbSNP
rs1436695584 378 dbSNP
rs1433639618 389 dbSNP
rs1270227959 390 dbSNP
rs1216715481 391 dbSNP
rs1225914988 394 dbSNP
rs547498637 395 dbSNP
rs1324828021 415 dbSNP
rs796431427 420 dbSNP
rs1009115719 422 dbSNP
rs1352624660 423 dbSNP
rs1240303665 427 dbSNP
rs1303292614 433 dbSNP
rs1476378933 437 dbSNP
rs1187004397 438 dbSNP
rs11211405 440 dbSNP
rs1441698320 443 dbSNP
rs1352857497 446 dbSNP
rs890721063 448 dbSNP
rs12735775 449 dbSNP
rs550253018 452 dbSNP
rs12735774 455 dbSNP
rs1346435012 456 dbSNP
rs1429898392 456 dbSNP
rs1433553621 457 dbSNP
rs1271283619 458 dbSNP
rs1175507785 463 dbSNP
rs1345342880 476 dbSNP
rs1479318893 481 dbSNP
rs1409767116 483 dbSNP
rs564167416 488 dbSNP
rs1282295918 490 dbSNP
rs11485679 509 dbSNP
rs12402176 523 dbSNP
rs1245997690 525 dbSNP
rs868717322 529 dbSNP
rs1201266649 537 dbSNP
rs1230694304 541 dbSNP
rs1204946348 542 dbSNP
rs9333045 557 dbSNP
rs9333046 558 dbSNP
rs796325731 559 dbSNP
rs1400773085 561 dbSNP
rs76535385 563 dbSNP
rs555842149 567 dbSNP
rs1403511067 568 dbSNP
rs1305387371 574 dbSNP
rs1346506195 575 dbSNP
rs1308091538 583 dbSNP
rs1223440875 584 dbSNP
rs537594338 587 dbSNP
rs1224345479 589 dbSNP
rs201817867 589 dbSNP
rs542994764 589 dbSNP
rs61784307 591 dbSNP
rs1482605672 592 dbSNP
rs558099833 592 dbSNP
rs1453450643 593 dbSNP
rs1470223790 594 dbSNP
rs746632544 619 dbSNP
rs1048043498 622 dbSNP
rs1406794912 626 dbSNP
rs1423338428 629 dbSNP
rs182771828 637 dbSNP
rs1468133896 644 dbSNP
rs1391122223 646 dbSNP
rs1327109625 647 dbSNP
rs1346771654 651 dbSNP
rs1159495963 652 dbSNP
rs1314520155 654 dbSNP
rs1399760924 655 dbSNP
rs143827915 656 dbSNP
rs1184963566 662 dbSNP
rs1444694881 668 dbSNP
rs918269469 672 dbSNP
rs1038108145 677 dbSNP
rs368226526 678 dbSNP
rs113060578 684 dbSNP
rs143758361 685 dbSNP
rs1186357821 686 dbSNP
rs1261680913 690 dbSNP
rs191716674 696 dbSNP
rs990615516 710 dbSNP
rs542775847 713 dbSNP
rs1294187643 720 dbSNP
rs9333051 724 dbSNP
rs9333052 726 dbSNP
rs1312955220 739 dbSNP
rs570903212 740 dbSNP
rs552108028 741 dbSNP
rs527446067 749 dbSNP
rs1363906995 752 dbSNP
rs1289301861 755 dbSNP
rs966723751 757 dbSNP
rs1325732833 758 dbSNP
rs1225122986 761 dbSNP
rs769155340 773 dbSNP
rs1343124198 774 dbSNP
rs9333053 777 dbSNP
rs9333054 778 dbSNP
rs1010969413 779 dbSNP
rs1260796465 790 dbSNP
rs529933832 792 dbSNP
rs1384086850 797 dbSNP
rs1203704217 802 dbSNP
rs1428493048 803 dbSNP
rs1161057504 805 dbSNP
rs1430872627 806 dbSNP
rs187780382 821 dbSNP
rs9333055 826 dbSNP
rs1009063245 836 dbSNP
rs1427383375 840 dbSNP
rs1471008176 847 dbSNP
rs1337521245 848 dbSNP
rs182628397 849 dbSNP
rs1485077838 851 dbSNP
rs1320189991 856 dbSNP
rs575301873 858 dbSNP
rs1223532270 864 dbSNP
rs1281011668 866 dbSNP
rs1167963711 873 dbSNP
rs1325185315 874 dbSNP
rs1223723594 880 dbSNP
rs1259674245 883 dbSNP
rs1484605709 886 dbSNP
rs12041693 897 dbSNP
rs1264405123 898 dbSNP
rs896786734 900 dbSNP
rs1038460603 901 dbSNP
rs941080034 903 dbSNP
rs916337997 907 dbSNP
rs1363353846 924 dbSNP
rs111621534 926 dbSNP
rs1160230505 928 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucGGAGGAAGGGa 5'
                     |||:|||||| 
Target 5' -------cuucCCUUCUUCCCa 3'
1 - 15
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000310638.4 | 3UTR | CUUCCCUUCUUCCCACCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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